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Choline attenuates NEFA-induced hepatic steatosis via GNMT regulation in hepatocytes. 胆碱通过GNMT调节肝细胞减轻nefa诱导的肝脂肪变性。
IF 5.8 Pub Date : 2025-11-14 DOI: 10.1007/s44154-025-00264-3
Xueer Du, Lamei Wang, Yanfei Dai, Jing Lu, Hongrui Li, Dangdang Wang, Jun Zhang, Chuanjiang Cai, Shimin Liu, Junhu Yao, Jianguo Wang, Yangchun Cao

To elucidate the molecular mechanisms by which choline regulates hepatic lipid metabolism under negative energy balance conditions, we established non-esterified fatty acid (NEFA)-induced hepatic steatosis models in both calf primary hepatocytes and human LO2 hepatocytes. Choline supplementation significantly reduced intracellular triglyceride accumulation and cytotoxicity induced by NEFA exposure. Transcriptomic profiling identified glycine N-methyltransferase (GNMT) as a key differentially expressed gene. Subsequent experiments confirmed that choline upregulated GNMT expression at both the mRNA and protein levels in a concentration-dependent manner. Knockdown of GNMT reversed the beneficial effects of choline on genes related to lipid synthesis (FAS, ACC), fatty acid oxidation (CPT1), lipoprotein assembly (ApoB100, MTTP), and bile acid metabolism (CYP7A1, CYP27A1, BSEP). Furthermore, inhibition of AMP-activated protein kinase (AMPK) reduced GNMT protein expression and elevated Myc, a negative transcriptional regulator of GNMT, suggesting that choline may regulate GNMT through the AMPK/Myc axis. Collectively, our findings demonstrate that choline alleviates NEFA-induced lipid accumulation and hepatocellular damage by modulating lipid and bile acid metabolism through GNMT, with the AMPK/Myc/GNMT signaling axis playing a pivotal regulatory role. These results provide mechanistic insights into the hepatic protective effects of choline and suggest GNMT as a potential therapeutic target for metabolic disorders in dairy cows and beyond.

为了阐明胆碱在负能量平衡条件下调节肝脏脂质代谢的分子机制,我们在犊牛原代肝细胞和人LO2肝细胞中建立了非酯化脂肪酸(NEFA)诱导的肝脂肪变性模型。补充胆碱可显著降低NEFA暴露引起的细胞内甘油三酯积累和细胞毒性。转录组学分析发现甘氨酸n -甲基转移酶(GNMT)是一个关键的差异表达基因。随后的实验证实,胆碱在mRNA和蛋白水平上以浓度依赖的方式上调GNMT的表达。GNMT的敲低逆转了胆碱对脂质合成(FAS、ACC)、脂肪酸氧化(CPT1)、脂蛋白组装(ApoB100、MTTP)和胆酸代谢(CYP7A1、CYP27A1、BSEP)相关基因的有益作用。此外,抑制amp活化蛋白激酶(AMPK)可降低GNMT蛋白的表达,并升高GNMT的负转录调节因子Myc,这表明胆碱可能通过AMPK/Myc轴调节GNMT。总之,我们的研究结果表明,胆碱通过GNMT调节脂质和胆汁酸代谢,减轻nefa诱导的脂质积累和肝细胞损伤,其中AMPK/Myc/GNMT信号轴起关键调节作用。这些结果为胆碱的肝脏保护作用提供了机制见解,并表明GNMT是奶牛代谢紊乱的潜在治疗靶点。
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引用次数: 0
Nontoxic mesoporous silica nanoparticles protect Physcomitrium patens against salt stress. 无毒介孔二氧化硅纳米颗粒保护专利立胞免受盐胁迫。
IF 5.8 Pub Date : 2025-11-14 DOI: 10.1007/s44154-025-00262-5
Ying Zhou, Zhuo Yang, Jiaxue Li, Xuemei Xia, Wei Yuan, Chen Li, Wenxiu Qiu, Li Liu, Liu Duan

Mosses play a crucial role in environmental protection, ecological preservation, and horticulture. While the effects of nanomaterials on angiosperms have been widely studied, their impact on bryophytes remains underexplored. In this study, we investigated the effects of mesoporous silica nanoparticles (MSNs) and virus-like mesoporous silica nanoparticles (VMSNs) on the model moss species Physcomitrium patens (P. patens). Our results revealed that MSNs, with an average size of approximately 123 nm, are nontoxic to P. patens and enhance its salt tolerance. The expression of key genes involved in stress responses were significantly induced in MSN-treated plants under salt stress, including peroxidase (POX), L-ascorbate oxidase (L-AO), alternative oxidase (AOX), and calcium-dependent protein kinase (CPK). MSN treatment reduced the accumulation of H2O2 and O2·-, increased Ca2+ signaling, and modulated reactive oxygen species (ROS) homeostasis, collectively improving moss tolerance to salt stress. MSNs were observed on the cell surface, in intercellular space, and within the cytosol and vesicles. They were transported bidirectionally between rhizoids and apical leaves. This study provides novel insights into the distribution, transport, and functional mechanisms of MSNs in mosses, offering a valuable foundation for the application of nanomaterials in plant stress biology and ecological management of bryophytes.

苔藓在环境保护、生态保护和园艺中发挥着至关重要的作用。虽然纳米材料对被子植物的影响已被广泛研究,但对苔藓植物的影响仍未得到充分探讨。在本研究中,我们研究了介孔二氧化硅纳米颗粒(MSNs)和病毒样介孔二氧化硅纳米颗粒(VMSNs)对模式苔藓物种patens (P. patens)的影响。结果表明,平均尺寸约为123 nm的msn对P. patens无毒,并增强了其耐盐性。盐胁迫下,msnn处理植株的过氧化物酶(POX)、l -抗坏血酸氧化酶(L-AO)、替代氧化酶(AOX)和钙依赖性蛋白激酶(CPK)等参与胁迫应答的关键基因的表达均受到显著诱导。MSN处理降低了H2O2和O2·-的积累,增加了Ca2+信号,调节了活性氧(ROS)的稳态,共同提高了苔藓对盐胁迫的耐受性。在细胞表面、细胞间隙、细胞质和囊泡内观察到微粒微球。它们在根状叶和顶叶之间双向运输。本研究对苔藓植物中纳米微粒子的分布、转运和功能机制提供了新的认识,为纳米材料在植物胁迫生物学和苔藓植物生态管理中的应用提供了有价值的基础。
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引用次数: 0
Exploring the mechanisms of desert plant adaptation to arid climates: a multi-omics analysis of dehydration and rehydration responses in Syntrichia caninervis. 荒漠植物适应干旱气候的机制探讨:犬心毛虫脱水和复水化反应的多组学分析。
IF 5.8 Pub Date : 2025-11-04 DOI: 10.1007/s44154-025-00241-w
Qilin Yang, Huan Zhang, Fangliu Yin, Haron Salih, RuiRui Yang, Bei Gao, Xiaoshuang Li, Daoyuan Zhang

Desert plants have evolved remarkable adaptations to survive in arid environments, where water scarcity and extreme temperatures pose significant challenges to life. The desert moss Syntrichia caninervis stands out as an exemplary model of extreme desiccation tolerance (DT), offering invaluable insights into plant adaptation to water deficit. This study presents a comprehensive multi-omics analysis of S. caninervis during controlled dehydration and rehydration process, integrating transcriptomic, proteomic, and metabolomic data to elucidate the molecular mechanisms underlying its remarkable resilience. Our findings reveal a sophisticated, multilayered response characterized by extensive transcriptional reprogramming (3,153 differentially expressed genes), dynamic proteome remodeling (873 differentially expressed proteins), and strategic metabolic reconfiguration (185 differentially abundant metabolites). Key adaptations include the coordinated downregulation of photosynthetic processes, upregulation of stress-responsive genes and proteins, accumulation of protective metabolites, and enhancement of antioxidant systems. Notably, we observed significant temporal asynchrony between transcript and protein levels, underscoring the complexity of post-transcriptional regulation in stress responses. The core mechanisms of S. caninervis DT comprises cellular protection and metabolic dormancy during dehydration, followed by efficient repair and recovery processes upon rehydration. These findings not only advance our understanding of plant evolution and adaptation to extreme environments but also identify potential targets for enhancing drought tolerance in crops and exploring plant survival under extreme environment. By deciphering the molecular basis of extreme DT, this research opens new avenues for addressing agricultural challenges in water-limited environments and expands our knowledge of plant life's adaptability to harsh terrestrial.

沙漠植物已经进化出了非凡的适应能力,能够在干旱环境中生存,在干旱环境中,缺水和极端温度对生命构成了重大挑战。沙漠苔藓犬齿藓(Syntrichia caninervis)是极端干燥耐受性(DT)的典范,为植物适应缺水提供了宝贵的见解。本研究通过综合转录组学、蛋白质组学和代谢组学数据,对犬链球菌控制脱水和补液过程进行了全面的多组学分析,以阐明其卓越恢复力的分子机制。我们的研究结果揭示了一种复杂的、多层次的反应,其特征是广泛的转录重编程(3153个差异表达基因)、动态蛋白质组重塑(873个差异表达蛋白)和战略性代谢重配置(185个差异丰富的代谢物)。关键的适应包括光合作用过程的协同下调、应激反应基因和蛋白质的上调、保护性代谢物的积累以及抗氧化系统的增强。值得注意的是,我们观察到转录物和蛋白质水平之间存在显著的时间不同步,强调了应激反应中转录后调控的复杂性。犬链球菌DT的核心机制包括脱水时的细胞保护和代谢休眠,再水化后的有效修复和恢复过程。这些发现不仅促进了我们对植物进化和对极端环境的适应的认识,而且还确定了增强作物耐旱性和探索极端环境下植物生存的潜在靶点。通过破解极端DT的分子基础,本研究为解决缺水环境下的农业挑战开辟了新的途径,并扩展了我们对植物生命对恶劣陆地环境的适应性的认识。
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引用次数: 0
Impact of clothianidin exposure on the growth, metabolism, and neurological function of Penaeus vannamei. 噻虫胺暴露对凡纳滨对虾生长、代谢和神经功能的影响。
IF 5.8 Pub Date : 2025-11-02 DOI: 10.1007/s44154-025-00259-0
Zhi Luo, Zhen-Fei Li, Zhi-Yu Lin, Zhen-Qiang Fu, Feng-Lu Han, Er-Chao Li

Clothianidin, a widely used neonicotinoid pesticide, poses potential ecological risks to aquatic ecosystems due to its unique mode of action and widespread environmental dispersal. This study investigates the toxic effects of clothianidin on Penaeus vannamei at different concentrations over 28 days. High concentrations of clothianidin significantly affected shrimp physiology, as evidenced by changes in survival rate and weight gain. Markers of oxidative stress, including decreased respiratory burst, reduced glutathione levels, and diminished antioxidant enzyme activities, indicated that clothianidin triggered oxidative stress responses in shrimp. Additionally, changes in lactate dehydrogenase, succinate dehydrogenase, and isocitrate dehydrogenase activities suggested disruptions in energy metabolism in the hepatopancreas. Analysis of the nervous system revealed significant disturbances in neural signaling, reflected by altered levels of acetylcholine, acetylcholinesterase, and dopamine. Transcriptomic analysis highlighted significant changes in gene expression and metabolic processes in the nervous system. This study demonstrates that clothianidin disrupts oxidative balance, energy metabolism, and neural signaling, affecting the growth of P. vannamei and providing valuable insights into its biochemical and transcriptomic toxicity in aquatic environments.

噻虫胺是一种广泛使用的新烟碱类农药,由于其独特的作用方式和广泛的环境扩散,对水生生态系统构成了潜在的生态风险。本研究研究了不同浓度噻虫胺对凡纳滨对虾28天的毒性作用。高浓度噻虫胺显著影响虾的生理机能,如存活率和体重增加的变化。氧化应激标志物,包括呼吸爆发减少、谷胱甘肽水平降低和抗氧化酶活性降低,表明噻虫胺引发了虾的氧化应激反应。此外,乳酸脱氢酶、琥珀酸脱氢酶和异柠檬酸脱氢酶活性的变化表明肝胰腺能量代谢受到破坏。神经系统分析显示神经信号明显紊乱,反映在乙酰胆碱、乙酰胆碱酯酶和多巴胺水平的改变上。转录组学分析强调了神经系统中基因表达和代谢过程的显著变化。该研究表明,clothianidin破坏氧化平衡、能量代谢和神经信号传导,影响P. vannamei的生长,并为其在水生环境中的生化和转录组毒性提供了有价值的见解。
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引用次数: 0
Linking the interaction of Salicylates and Jasmonates for stress resilience in plants. 水杨酸盐和茉莉酸盐相互作用对植物抗逆性的影响。
IF 5.8 Pub Date : 2025-10-28 DOI: 10.1007/s44154-025-00250-9
Ekta Pandey, Rinkee Kumari, Shahla Faizan, Saurabh Pandey

Plants are continuously exposed to environmental abiotic and biotic stressors that can significantly impact their growth, development, productivity, and lifespan. However, plants have developed exceptionally complex signaling pathways that enable their ability to sense, transduce, and respond to these diverse stress stimuli. Salicylates (SA) and jasmonates (JA) are two key phytohormones that significantly influence plant adaptation to environmental and biotic stressors, pivotal in enhancing stress resilience. The interaction and crosstalk between SA and JA signaling cascades are essential for orchestrating appropriate physiological and biochemical responses to biotic (e.g., pathogen attack, herbivory) and abiotic (e.g., oxidative stress, drought, temperature extremes, UV radiation, salinity, heavy metal toxicity) stresses. Salicylates are primarily recognized for being involved in systemic acquired resistance (SAR) against biotic stressors like pathogens. Conversely, jasmonates are well-documented in their function in defenses aimed at herbivorous insects and in mitigating the outcomes of abiotic conditions such as salinity and drought. However, the crosstalk between SAs and JAs is complex, involving both synergistic and antagonistic interactions that finely tune the natural defensive mechanism of the plant toward both biotic and abiotic stresses. This comprehensive review summarizes the most recent research on how SA and JA biosynthesis, signaling, and interactions govern diverse stress adaptive mechanisms in plants. It covers emerging evidence on the importance of SA-JA crosstalk in regulating physiological, biochemical, and molecular adaptations to combined biotic and abiotic stresses.

植物持续暴露于环境中的非生物和生物胁迫因素,这些胁迫因素会显著影响植物的生长、发育、生产力和寿命。然而,植物已经发展出异常复杂的信号通路,使它们能够感知、转导和响应这些不同的胁迫刺激。水杨酸盐(SA)和茉莉酸盐(JA)是影响植物适应环境和生物胁迫的两种关键植物激素,在增强植物的逆境恢复能力中起着关键作用。SA和JA信号级联之间的相互作用和串扰对于协调对生物(如病原体攻击、草食)和非生物(如氧化应激、干旱、极端温度、紫外线辐射、盐度、重金属毒性)胁迫的适当生理和生化反应至关重要。水杨酸酯主要被认为参与了对生物应激源(如病原体)的系统性获得性耐药(SAR)。相反,茉莉酸盐在防御草食性昆虫和减轻非生物条件(如盐度和干旱)的结果方面的功能得到了充分的证明。然而,SAs和JAs之间的串扰是复杂的,涉及协同和拮抗相互作用,这些相互作用精细地调节了植物对生物和非生物胁迫的自然防御机制。本文综述了植物中SA和JA的生物合成、信号传导和相互作用如何调控多种胁迫适应机制的最新研究进展。它涵盖了SA-JA串扰在调节生理、生化和分子适应生物和非生物联合胁迫中的重要性的新证据。
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引用次数: 0
Seminal plasma exosomes improve the motility and mitochondrial function of goat spermatozoa during liquid storage by regulating oxidative phosphorylation. 精浆外泌体通过调节氧化磷酸化,改善山羊精子在液体储存过程中的运动能力和线粒体功能。
IF 5.8 Pub Date : 2025-10-28 DOI: 10.1007/s44154-025-00253-6
Tengfei Liu, Mengmei Zhang, Xinkang Li, Xinyan Zhao, Yongjie Wu, Hong Chen

Exosomes as bilayer membranous vesicles are abundant in seminal plasma and mediate intercellular communication by transferring active biomolecules. Numerous studies have revealed the involvement of exosomes in regulating various biological properties of spermatozoa. However, the beneficial roles of seminal plasma exosomes in maintaining spermatozoon motility and mitochondrial function during liquid storage have not yet been unexplored in goat. In this study, the reduction of ATP content in goat spermatozoa was detected along with the decrease in spermatozoon motility under liquid storage, and the level of oxidative phosphorylation was also decreased. The interaction of exosomes and spermatozoon mitochondria was observed using high pressure freezing/freeze-substitution in combination with transmission electron microscope. Seminal plasma exosomes of goat were isolated and used to incubate with spermatozoa, and the binding and fusing of exosomes with spermatozoa was further validated. Furthermore, the addition of seminal plasma exosomes exhibited an increase in motility and oxidative phosphorylation in liquid-stored spermatozoa. Several mitochondrial functional parameters, including mitochondrial membrane potential, the levels of mitochondrial ROS and intracellular Ca2+, and the copy number and integrity of mitochondrial DNA, were also improved in spermatozoa after incubating with exosomes. Notably, the level of TFAM protein was increased in exosome-treated spermatozoa, indicating that the enhanced proteins may be delivered by exosomes to spermatozoa. These results suggest that seminal plasma exosomes could improve spermatozoon motility and mitochondrial function by regulating oxidative phosphorylation, which would provide insights into the understanding of protective roles of exosomes in goat spermatozoa during liquid storage.

外泌体是精浆中丰富的双层膜囊,通过传递活性生物分子介导细胞间通讯。大量研究表明外泌体参与调节精子的各种生物学特性。然而,在山羊的液体储存过程中,精浆外泌体在维持精子活力和线粒体功能方面的有益作用尚未得到探索。本研究发现,在液体储存条件下,山羊精子中ATP含量降低,精子活力下降,氧化磷酸化水平也降低。采用高压冷冻/冷冻置换结合透射电镜观察外泌体与精子线粒体的相互作用。分离山羊精浆外泌体并与精子孵育,进一步验证了外泌体与精子的结合融合。此外,精浆外泌体的添加增加了液体储存精子的运动性和氧化磷酸化。精子与外泌体孵育后,线粒体膜电位、线粒体ROS和细胞内Ca2+水平以及线粒体DNA的拷贝数和完整性等线粒体功能参数也得到改善。值得注意的是,在外泌体处理的精子中,TFAM蛋白水平升高,表明增强的蛋白可能通过外泌体传递到精子中。这些结果表明,精浆外泌体可能通过调节氧化磷酸化来改善精子的运动能力和线粒体功能,这将有助于了解外泌体在山羊精子液体储存过程中的保护作用。
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引用次数: 0
Plant-pathogen interactions: making the case for multi-omics analysis of complex pathosystems. 植物-病原体相互作用:复杂病理系统的多组学分析。
IF 5.8 Pub Date : 2025-10-28 DOI: 10.1007/s44154-025-00260-7
Sadegh Balotf, Richard Wilson, Roghayeh Hemmati, Mahsa Eshaghi, Calum Wilson, Luis A J Mur

Understanding plant-pathogen interactions requires a systems-level perspective that single-omics approaches, such as genomics, transcriptomics, proteomics, or metabolomics alone, often fail to provide. While these methods are informative, they are limited in their ability to capture the complexity of the dynamic molecular interactions between host and pathogen. Multi-omics strategies offer a powerful solution by integrating complementary data types, enabling a more comprehensive view of the molecular networks and pathways involved in disease progression and defence. Although technological advances have made omics analyses more accessible and affordable, their integration remains underutilised in plant science. This review highlights the limitations of single-omics studies in dissecting plant-pathogen interactions and emphasises the value of multi-omics approaches. We discuss available computational tools for data integration and visualisation, outline current challenges, including data heterogeneity, normalisation issues, and computational demands, and explore future directions such as the exploitation of artificial intelligence-based approaches and single-cell omics. We conclude that the increasing accessibility and affordability of omics analysis means that multi-omics strategies are now indispensable tools to investigate complex biological processes such as plant-pathogen interactions.

理解植物与病原体的相互作用需要一个系统级的视角,而单组学方法,如基因组学、转录组学、蛋白质组学或代谢组学往往无法提供。虽然这些方法提供了信息,但它们在捕捉宿主和病原体之间动态分子相互作用的复杂性方面的能力有限。通过整合互补的数据类型,多组学策略提供了一个强大的解决方案,能够更全面地了解参与疾病进展和防御的分子网络和途径。尽管技术进步使组学分析更容易获得和负担得起,但它们的整合在植物科学中仍然没有得到充分利用。这篇综述强调了单组学研究在解剖植物与病原体相互作用方面的局限性,并强调了多组学方法的价值。我们讨论了用于数据集成和可视化的可用计算工具,概述了当前的挑战,包括数据异构、规范化问题和计算需求,并探索了未来的方向,如基于人工智能的方法和单细胞组学的利用。我们的结论是,组学分析的可及性和可负担性的增加意味着多组学策略现在是研究复杂生物过程(如植物-病原体相互作用)不可或缺的工具。
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引用次数: 0
Temporal proteomic profiling via 4D-DIA reveals early defense mechanisms and core resistance determinants in soybean against Phakopsora pachyrhizi. 4D-DIA时间蛋白质组学分析揭示了大豆对肿根Phakopsora的早期防御机制和核心抗性决定因素。
IF 5.8 Pub Date : 2025-10-27 DOI: 10.1007/s44154-025-00268-z
Zihua Lu, Cong Han, Chao Li, Kelin Deng, Zhihui Shan, Shuilian Chen, Hongli Yang, Yuanxiao Yang, Zhonglu Yang, Hongwei Wang, Haifeng Chen, Qingnan Hao

Asian soybean rust, caused by Phakopsora pachyrhizi, is a devastating fungal disease threatening global soybean production, particularly in tropical regions where chemical control is increasingly unsustainable. This study employed cutting-edge 4D-DIA proteomics to investigate molecular defense mechanisms in resistant (SX6907) and susceptible (Tianlong 1) soybean cultivars during early infection (12 hpi and 3 dpi). We identified 12,852 proteins, with 1,510 differentially expressed proteins (DEPs) revealing genotype-specific responses. Resistant plants exhibited sustained upregulation of immune receptors (CRKs, LRR-RLKs), MAPK signaling components, and cell wall reinforcement proteins (peroxidases, XTHs), alongside dynamic modulation of calcium signaling and ROS homeostasis. These patterns suggest key pathways enriched in resistance may include phenylpropanoid biosynthesis, isoflavonoid production, and ER stress responses, while susceptible plants showed suppression of photosynthesis and defense pathways. Weighted Protein Co-expression Network Analysis(WPCNA) highlighted co-expression modules linked to resistance, potentially including NLR-mediated effector-triggered immunity. Crucially, DIR proteins and organelle-specific defense hubs (e.g., chloroplasts, nuclei) were implicated in rust resistance. Validation by qPCR confirmed concordance for 84% of tested DEPs. Our findings provide a protein-level blueprint of soybean rust resistance, identifying candidate targets for marker-assisted breeding and genetic engineering to develop durable resistant varieties, reducing reliance on fungicides.

亚洲大豆锈病是一种破坏性真菌病,威胁着全球大豆生产,特别是在化学防治日益不可持续的热带地区。本研究采用先进的4D-DIA蛋白质组学技术研究了抗性(SX6907)和易感(天龙1号)大豆品种在感染早期(12 hpi和3 dpi)的分子防御机制。我们鉴定了12,852个蛋白,其中1,510个差异表达蛋白(dep)揭示了基因型特异性反应。抗性植物表现出免疫受体(CRKs, LRR-RLKs), MAPK信号成分和细胞壁强化蛋白(过氧化物酶,XTHs)的持续上调,以及钙信号和ROS稳态的动态调节。这些模式表明,抗性丰富的关键途径可能包括苯丙素生物合成、异黄酮生产和内质网胁迫响应,而易感植物则表现出光合作用和防御途径的抑制。加权蛋白共表达网络分析(WPCNA)强调了与耐药性相关的共表达模块,可能包括nlr介导的效应触发免疫。至关重要的是,DIR蛋白和细胞器特异性防御中心(如叶绿体、细胞核)与抗锈病能力有关。qPCR验证证实84%的dep检测结果一致。我们的研究结果提供了大豆抗锈病的蛋白质水平蓝图,确定了标记辅助育种和基因工程的候选目标,以开发持久的抗性品种,减少对杀菌剂的依赖。
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引用次数: 0
Evaluation of genetic diversity and selection signals in gayal populations across four countries through whole-genome resequencing. 通过全基因组重测序评估四个国家的ayal种群的遗传多样性和选择信号。
IF 5.8 Pub Date : 2025-10-26 DOI: 10.1007/s44154-025-00252-7
Xin Liu, Qiaoxian Li, Jianyong Liu, Zulfiqar Ahmed, Jicai Zhang, Zhe Wang, Ankui Wang, Ningbo Chen, Yongzhen Huang, Gang Ren, Hong Chen, Chuzhao Lei, Bizhi Huang

Gayal (Bos frontalis) an endangered bovine species inhabitingChina, India, Bangladesh, Myanmar and Bhutan, has a mysterious evolutionary origin. Shaped by natural selection, its unique traits make it a valuable genetic resource; however, its populations are rapidly declining. In this study, comprehensive whole-genome resequencing of fifty-eight samples of Gayal from China, India, Myanmar and Bangladesh was performed. We identified over 44 million SNPs across four Gayal populations. Nucleotide diversity analysis revealed variations in genetic diversity, with the lowest occurring in India and the highest occurring in China. Phylogenetic tree analysis revealed three distinct clades representing China, India and Bangladesh-Myanmar, which were further confirmed by principal component and admixture analyses. The genetic exchanges between Gayal and other bovine species indicate limited influence from domestic cattle in both the Chinese and Bangladeshi Gayal populations. Mitochondrial DNA sequences and a phylogenetic tree highlighted the unique mitochondrial genome of Gayal. Genome-wide selection signals pinpointed candidate genes linked to mitochondrial function, immunity, musculoskeletal development, reproduction and growth performance. Distinct haplotype patterns emerged for the CCDC157, KIAA0753 and MTFP1 genes in the Chinese and Bangladesh-Myanmar Gayal populations, indicating artificial selection in the Chinese population. KEGG pathway and gene ontology enrichment analyses provided insights into processes related to neurodevelopment, cardiac function, tissue growth, immunity and metabolism. In summary, our study enhances our understanding of Gayal genetics, population structure and selection signals across four countries. This knowledge is crucial for conserving this endangered species amid its rapid decline.

盖牛(bosfrontalis)是一种生活在中国、印度、孟加拉国、缅甸和不丹的濒危牛种,有着神秘的进化起源。经过自然选择,其独特的性状使其成为一种宝贵的遗传资源;然而,它的数量正在迅速下降。在这项研究中,对来自中国、印度、缅甸和孟加拉国的58个盖雅族样本进行了全面的全基因组重测序。我们在四个盖雅族人群中发现了超过4400万个snp。核苷酸多样性分析揭示了遗传多样性的差异,印度的遗传多样性最低,中国的遗传多样性最高。系统进化树分析显示了中国、印度和孟加拉-缅甸三个不同的分支,主成分分析和混合分析进一步证实了这一点。牦牛与其他牛种之间的遗传交流表明,家畜对中国和孟加拉国的牦牛种群的影响有限。线粒体DNA序列和系统发育树突出了盖雅族独特的线粒体基因组。全基因组选择信号确定了与线粒体功能、免疫、肌肉骨骼发育、繁殖和生长性能相关的候选基因。CCDC157、KIAA0753和MTFP1基因在中国和孟加拉缅雅族人群中出现了不同的单倍型模式,表明中国人群存在人工选择。KEGG通路和基因本体富集分析提供了与神经发育、心功能、组织生长、免疫和代谢相关的过程的见解。总之,我们的研究提高了我们对四个国家的盖雅族遗传、群体结构和选择信号的理解。这些知识对于在这种濒危物种迅速减少的情况下保护它们至关重要。
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引用次数: 0
Upregulation of deubiquitinase UBP16 induced by rice stripe virus infection stabilizes SHMT1 to suppress ROS accumulation and facilitate virus infection in Nicotiana benthamiana. 水稻条纹病毒侵染诱导去泛素酶UBP16上调,稳定SHMT1抑制ROS积累,促进本烟病毒侵染。
IF 5.8 Pub Date : 2025-10-26 DOI: 10.1007/s44154-025-00265-2
Kun Wang, Yaqin Wang, Shuai Fu, Yuchong Tan, Liang Wu, Yi Xu, Jianxiang Wu, Xueping Zhou

Modification of proteins by ubiquitin is a dynamic and reversible process. It is unclear whether rice stripe virus (RSV) can modulate the plant deubiquitination pathway. In this study, we found that RSV infection can specifically upregulate the expression of the deubiquitinase NbUBP16. Further analysis revealed that NbUBP16 stabilizes serine hydroxymethyltrasferase (SHMT1) by binding to NbSHMT1 and removing its polyubiquitination modification mediated by E3 ligase MEL, which inhibits downstream SHMT1-mediated ROS accumulation and thereby facilitates RSV infection. Our findings provide new insights into the molecular arms race between pathogens and plants, demonstrating how a plant virus can undermine plant defenses by hijacking host deubiquitination pathways.

泛素修饰蛋白质是一个动态可逆的过程。水稻条纹病毒(RSV)是否能调控植物去泛素化途径尚不清楚。本研究发现,RSV感染可特异性上调去泛素酶NbUBP16的表达。进一步分析发现,NbUBP16通过与NbSHMT1结合,去除其E3连接酶MEL介导的多泛素化修饰,从而稳定丝氨酸羟甲基转移酶(SHMT1),抑制下游SHMT1介导的ROS积累,从而促进RSV感染。我们的发现为病原体和植物之间的分子军备竞赛提供了新的见解,展示了植物病毒如何通过劫持宿主去泛素化途径来破坏植物防御。
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引用次数: 0
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Stress biology
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