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Single-cell transcriptomic analysis reveals the developmental trajectory and transcriptional regulatory networks of quinoa salt bladders. 单细胞转录组分析揭示了藜盐膀胱的发育轨迹和转录调控网络。
Pub Date : 2024-11-13 DOI: 10.1007/s44154-024-00189-3
Hao Liu, Zhixin Liu, Yaping Zhou, Aizhi Qin, Chunyang Li, Yumeng Liu, Peibo Gao, Qianli Zhao, Xiao Song, Mengfan Li, Luyao Kong, Yajie Xie, Lulu Yan, Enzhi Guo, Xuwu Sun

Salt bladders, specialized structures on the surface of quinoa leaves, secrete Na+ to mitigate the effects of the plant from abiotic stresses, particularly salt exposure. Understanding the development of these structures is crucial for elucidating quinoa's salt tolerance mechanisms. In this study, we employed transmission electron microscopy to detail cellular differentiation across the developmental stages of quinoa salt bladders. To further explore the developmental trajectory and underlying molecular mechanisms, we conducted single-cell RNA sequencing on quinoa protoplasts derived from young leaves. This allowed us to construct a cellular atlas, identifying 13 distinct cell clusters. Through pseudotime analysis, we mapped the developmental pathways of salt bladders and identified regulatory factors involved in cell fate decisions. GO and KEGG enrichment analyses, as well as experimental results, revealed the impacts of salt stress and the deprivation of sulfur and nitrogen on the development of quinoa salt bladders. Analysis of the transcription factor interaction network in pre-stalk cells (pre-SC), stalk cells (SC), and epidermal bladder cells (EBCs) indicated that TCP5, YAB5, NAC078, SCL8, GT-3B, and T1P17.40 play crucial roles in EBC development. Based on our findings, we developed an informative model elucidating salt bladder formation. This study provides a vital resource for mapping quinoa leaf cells and contributes to our understanding of its salt tolerance mechanisms.

盐囊是藜麦叶片表面的特化结构,能分泌 Na+ 以减轻非生物胁迫(尤其是盐暴露)对植物的影响。了解这些结构的发展对于阐明藜麦的耐盐机制至关重要。在本研究中,我们利用透射电子显微镜详细研究了藜麦盐囊各发育阶段的细胞分化。为了进一步探索发育轨迹和潜在的分子机制,我们对来自幼叶的藜麦原生质体进行了单细胞 RNA 测序。这使我们能够构建细胞图谱,识别出 13 个不同的细胞群。通过假时分析,我们绘制了盐膀胱的发育途径图,并确定了参与细胞命运决定的调控因子。GO和KEGG富集分析以及实验结果揭示了盐胁迫以及硫和氮的剥夺对藜麦盐囊发育的影响。对茎前细胞(pre-SC)、茎细胞(SC)和表皮膀胱细胞(EBC)中转录因子相互作用网络的分析表明,TCP5、YAB5、NAC078、SCL8、GT-3B和T1P17.40在EBC的发育过程中起着至关重要的作用。基于我们的研究结果,我们建立了一个信息丰富的模型来阐明盐囊的形成。这项研究为绘制藜麦叶细胞图谱提供了重要资源,有助于我们了解藜麦的耐盐机制。
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引用次数: 0
Metabolic regulation of 5-oxoproline for enhanced heat tolerance in perennial ryegrass. 5-oxoproline 的代谢调节增强了多年生黑麦草的耐热性。
Pub Date : 2024-11-11 DOI: 10.1007/s44154-024-00175-9
Shuhan Lei, Stephanie Rossi, Zhimin Yang, Jingjin Yu, Bingru Huang

Pyroglutamic acid [(5-oxoproline (5-oxp)], a non-protein amino acid, can be converted to glutamate to regulate amino acid metabolism in plants. Its roles in plant adaptation to abiotic stresses, including heat stress, are not well understood. The objectives of this study were to determine whether exogenous application of 5-oxp could promote heat tolerance in cool-season perennial grass species and identify the major metabolic pathways that could be activated or responsive to 5-oxp for enhancing heat tolerance. Perennial ryegrass (Lolium perenne L.) plants were foliar-sprayed with 5-oxp or water (untreated control) prior to and during the exposure to heat stress (35/33 ℃, day/night temperature) or ambient temperature (25/22 ℃, day/night temperature, non-stress control) in controlled-environment growth chambers. Application of 5-oxp improved the heat tolerance of perennial ryegrass, as manifested by the chlorophyll content, photochemical efficiency, cell membrane stability, and antioxidant enzyme activities increasing by 31.2%, 25.7%, 37.2%, and 57.1-258.3%, as well as the reduction in hydrogen peroxide production by 36.8%. Metabolic profiling identified metabolites up-regulated by 5-oxp that are involved in the metabolic pathways of carbon assimilation in photosynthesis, glycolysis and the tricarboxylic acid cycle of respiration, proteinogenic amino acid metabolism, glutathione metabolism, and nucleotide metabolism for DNA or RNA synthesis and ATP generation. The up-regulation or activation of those metabolic processes could contribute to 5-oxp-mediated enhancement in the heat tolerance of perennial ryegrass.

焦谷氨酸[(5-oxoproline (5-oxp))]是一种非蛋白氨基酸,可转化为谷氨酸来调节植物体内的氨基酸代谢。它在植物适应非生物胁迫(包括热胁迫)中的作用尚不十分清楚。本研究的目的是确定外源施用 5-oxp 是否能提高多年生冷季型禾本科植物的耐热性,并确定可激活或响应 5-oxp 以提高耐热性的主要代谢途径。在多年生黑麦草(Lolium perenne L.)植株暴露于热胁迫(35/33 ℃,昼夜温差)或环境温度(25/22 ℃,昼夜温差,非胁迫对照)之前和期间,在可控环境生长室中叶面喷施 5-oxp 或水(未处理对照)。施用 5-oxp 提高了多年生黑麦草的耐热性,具体表现为叶绿素含量、光化学效率、细胞膜稳定性和抗氧化酶活性分别提高了 31.2%、25.7%、37.2% 和 57.1-258.3%,过氧化氢产生量减少了 36.8%。代谢谱分析发现,5-oxp 上调的代谢物涉及光合作用中的碳同化、糖酵解和呼吸作用中的三羧酸循环、蛋白质氨基酸代谢、谷胱甘肽代谢以及 DNA 或 RNA 合成和 ATP 生成的核苷酸代谢等代谢途径。这些代谢过程的上调或激活可能有助于 5-oxp 提高多年生黑麦草的耐热性。
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引用次数: 0
Zinc metalloprotease FgM35, which targets the wheat zinc-binding protein TaZnBP, contributes to the virulence of Fusarium graminearum. 以小麦锌结合蛋白 TaZnBP 为靶标的锌金属蛋白酶 FgM35 对禾谷镰刀菌的毒力有促进作用。
Pub Date : 2024-10-30 DOI: 10.1007/s44154-024-00171-z
Xin-Tong Wang, Kou-Han Liu, Ying Li, Yan-Yan Ren, Qiang Li, Bao-Tong Wang

Metalloproteinases are ubiquitous in organisms. Most metalloproteinases secreted by pathogenic microorganisms are also called virulence factors, because they degrade proteins in the external tissues of the host, thereby reducing the host's immunity and increasing its susceptibility to disease. Zinc metalloproteinase is one of the most common metalloproteinases. In our report, we studied the biological function of zinc metalloprotease FgM35 in Fusarium graminearum and the pathogen-host interaction during infection. We found that the asexual and sexual reproduction of the deletion mutant ΔFgM35 were affected, as well as the tolerance of F. graminearum to metal stress. In addition, deletion of FgM35 reduced the virulence of F. graminearum. The wheat target TaZnBP was screened using a wheat yeast cDNA library, and the interaction between FgM35 and TaZnBP was verified by HADDOCK molecular docking, yeast two-hybrid, Bi-FC, Luc, and Co-IP assays. The contribution of TaZnBP to plant immunity was also demonstrated. In summary, our work revealed the indispensable role of FgM35 in the reproductive process and the pathogenicity of F. graminearum, and it identified the interaction between FgM35 and TaZnBP as well as the function of TaZnBP. This provides a theoretical basis for further study of the function of metalloproteinases in pathogen-host interactions.

金属蛋白酶在生物体内无处不在。病原微生物分泌的大多数金属蛋白酶也被称为毒力因子,因为它们能降解宿主外部组织中的蛋白质,从而降低宿主的免疫力,增加宿主对疾病的易感性。锌金属蛋白酶是最常见的金属蛋白酶之一。在我们的报告中,我们研究了锌金属蛋白酶 FgM35 在禾谷镰刀菌中的生物学功能以及感染过程中病原体与宿主的相互作用。我们发现,缺失突变体ΔFgM35的无性繁殖和有性生殖均受到影响,禾谷镰刀菌对金属胁迫的耐受性也受到影响。此外,FgM35 的缺失还降低了禾谷镰孢的毒力。利用小麦酵母 cDNA 文库筛选了小麦靶标 TaZnBP,并通过 HADDOCK 分子对接、酵母双杂交、Bi-FC、Luc 和 Co-IP 试验验证了 FgM35 与 TaZnBP 之间的相互作用。同时还证明了 TaZnBP 对植物免疫的贡献。总之,我们的研究揭示了 FgM35 在禾谷镰孢的繁殖过程和致病性中不可或缺的作用,并确定了 FgM35 与 TaZnBP 之间的相互作用以及 TaZnBP 的功能。这为进一步研究金属蛋白酶在病原体-宿主相互作用中的功能提供了理论依据。
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引用次数: 0
Physiological and biochemical responses in a cadmium accumulator of traditional Chinese medicine Ligusticum sinense cv. Chuanxiong under cadmium condition. 中药川芎在镉积累条件下的生理生化反应镉条件下川芎的生理生化反应
Pub Date : 2024-10-14 DOI: 10.1007/s44154-024-00187-5
Shu-Qi Niu, Ting Li, Xiu-Wen Bao, Jing Bai, Lin Liu, Si-Jing Liu, Wei Qin, Yang Li, Jin-Lin Guo

Ligusticum sinense cv. Chuanxiong (L. Chuanxiong), one of the widely used traditional Chinese medicines (TCM), is currently facing the problem of excessive cadmium (Cd) content. This problem has significantly affected the quality and safety of L. Chuanxiong and become a vital factor restricting its clinical application and international trade development. Currently, to solve the problem of excessive Cd, it is essential to research the response mechanisms of L. Chuanxiong to Cd stress. However, there are few reports on its physiological and biochemical responses under Cd stress. In this study, we conducted the hydroponic experiment under 25 μM Cd stress, based on the Cd content of the genuine producing areas soil. The results showed that 25 μM Cd stress not only had no significant inhibitory effect on the growth of L. Chuanxiong seedlings but also significantly increased the chlorophyll a content (11.79%) and root activity (51.82%) compared with that of the control, which might be a hormesis effect. Further results showed that the absorption and assimilation of NH4+ increased in seedlings under 25 μM Cd stress, which was associated with high photosynthetic pigments. Here, we initially hypothesized and confirmed that Cd exceedance in the root system of L. Chuanxiong was due to the thickening of the root cell wall, changes in the content of the cell wall components, and chelation of Cd by GSH. There was an increase in cell wall thickness (57.64 %) and a significant increase in cellulose (25.48%) content of roots under 25 μM Cd stress. In addition, L. Chuanxiong reduced oxidative stress caused by 25 μM Cd stress mainly through the GSH/GSSG cycle. Among them, GSH-Px (48.26%) and GR (42.64%) activities were significantly increased, thereby maintaining a high GSH/GSSG ratio. This study preliminarily reveals the response of L. Chuanxiong to Cd stress and the mechanism of Cd enrichment. It provides a theoretical basis for solving the problem of Cd excessive in L. Chuanxiong.

川芎(Ligusticum sinense cv.川芎是一种广泛使用的传统中药,目前正面临镉(Cd)含量超标的问题。这一问题严重影响了川芎的质量和安全,成为制约川芎临床应用和国际贸易发展的重要因素。目前,要解决镉超标问题,必须研究川芎对镉胁迫的响应机制。然而,有关川芎在镉胁迫下的生理生化反应的报道很少。本研究根据川芎原产地土壤的镉含量,在 25 μM Cd 胁迫下进行了水培实验。结果表明,25 μM Cd 胁迫不仅对川芎幼苗的生长无明显抑制作用,而且与对照相比,叶绿素 a 含量(11.79%)和根系活性(51.82%)均显著增加,这可能是一种激素效应。进一步的结果表明,在 25 μM Cd 胁迫下,幼苗对 NH4+ 的吸收和同化增加,这与光合色素高有关。在此,我们初步假设并证实,川芎根系镉超标是由于根细胞壁增厚、细胞壁成分含量变化以及 GSH 对镉的螯合作用造成的。在 25 μM Cd 胁迫下,根细胞壁厚度增加(57.64%),纤维素含量显著增加(25.48%)。此外,川芎主要通过 GSH/GSSG 循环降低 25 μM Cd 胁迫引起的氧化应激。其中,GSH-Px(48.26%)和 GR(42.64%)的活性显著提高,从而维持了较高的 GSH/GSSG 比率。本研究初步揭示了川芎对镉胁迫的响应及镉富集机理。为解决川芎镉超标问题提供了理论依据。
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引用次数: 0
Transcriptomic dynamics of ABA response in Brassica napus guard cells. 甘蓝型油菜护卫细胞中 ABA 响应的转录组动态。
Pub Date : 2024-10-14 DOI: 10.1007/s44154-024-00169-7
Florent Villiers, Yasir Suhail, Jade Lee, Felix Hauser, Jaeung Hwang, Joel S Bader, John K McKay, Scott C Peck, Julian I Schroeder, June M Kwak

Drought has a significant, negative impact on crop production; and these effects are poised to increase with climate change. Plants acclimate to drought and water stress through diverse physiological responses, primarily mediated by the hormone abscisic acid (ABA). Because plants lose the majority of their water through stomatal pores on aerial surfaces of plants, stomatal closure is one of the rapid responses mediated by ABA to reduce transpirational water loss. The dynamic changes in the transcriptome of stomatal guard cells in response to ABA have been investigated in the model plant Arabidopsis thaliana. However, guard cell transcriptomes have not been analyzed in agronomically valuable crops such as a major oilseed crop, rapeseed. In this study, we investigated the dynamics of ABA-regulated transcriptomes in stomatal guard cells of Brassica napus and conducted comparison analysis with the transcriptomes of A. thaliana. We discovered changes in gene expression indicating alterations in a host of physiological processes, including stomatal movement, metabolic reprogramming, and light responses. Our results suggest the existence of both immediate and delayed responses to ABA in Brassica guard cells. Furthermore, the transcription factors and regulatory networks mediating these responses are compared to those identified in Arabidopsis. Our results imply the continuing evolution of ABA responses in Brassica since its divergence from a common ancestor, involving both protein-coding and non-coding nucleotide sequences. Together, our results will provide a basis for developing strategies for molecular manipulation of drought tolerance in crop plants.

干旱对作物生产有重大的负面影响;随着气候变化,这些影响还会加剧。植物通过各种生理反应来适应干旱和水分胁迫,这些反应主要由脱落酸(ABA)激素介导。由于植物的大部分水分是通过植物气生表面的气孔流失的,因此气孔关闭是 ABA 介导的快速反应之一,以减少蒸腾失水。在模式植物拟南芥(Arabidopsis thaliana)中研究了气孔保卫细胞转录组响应 ABA 的动态变化。然而,尚未对具有农艺价值的作物(如主要油料作物油菜籽)的保卫细胞转录组进行分析。在这项研究中,我们研究了甘蓝型油菜气孔保卫细胞中 ABA 调控转录组的动态,并与拟南芥的转录组进行了比较分析。我们发现基因表达的变化表明一系列生理过程发生了改变,包括气孔运动、代谢重编程和光反应。我们的研究结果表明,芸苔属防护细胞对 ABA 的反应既有即时反应,也有延迟反应。此外,我们还将介导这些反应的转录因子和调控网络与拟南芥中发现的转录因子和调控网络进行了比较。我们的研究结果表明,自芸薹属植物从共同祖先分化而来以来,其 ABA 反应在不断进化,其中涉及蛋白编码和非编码核苷酸序列。我们的研究结果将为制定作物耐旱性分子调控策略奠定基础。
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引用次数: 0
An asymptomatic geminivirus activates autophagy and enhances plant defenses against diverse pathogens. 一种无症状的 geminivirus 能激活自噬,增强植物对多种病原体的防御能力。
Pub Date : 2024-10-08 DOI: 10.1007/s44154-024-00176-8
Li Wang, Zijie Yu, Mengge Jiang, Mengyuan Tian, Hongsheng Zhou, Wanying Zhao, Ida Bagus Andika, Qiaoxia Shang, Liying Sun

Plant viral diseases cause great losses in agricultural production. Virus cross-protection is a strategy in which a mild virus is employed to shield plants against subsequent infections by severe viral strains. However, this approach is restricted to protection against the same viruses. In this study, we observed that pre-inoculation with apple geminivirus (AGV) reduced the accumulation of secondarily infected heterologous viruses, such as cucumber mosaic virus, potato virus X, and tobacco mosaic virus in Nicotiana benthamiana, tomato, and pepper plants. Transcriptional expression analysis showed that autophagy-related genes were transcriptionally up-regulated upon AGV inoculation at an early stage of infection. Accordingly, autophagic activity was observed to be elevated following AGV infection. Interestingly, AGV accumulation was reduced in autophagy-deficient plants, suggesting that autophagy activation promotes AGV infection in the plant. Moreover, pre-inoculation with AGV provided cross-protection against infection with a phytopathogenic bacterium (Pseudomonas syringae) and fungus (Botrytis cinerea) in Nicotiana species. In summary, our study showed that AGV, an asymptomatic virus, could protect plants against severe viral, fungal, and bacterial diseases to some extent through the activation of autophagy pathways, highlighting its potential as a biocontrol agent for managing a wide range of plant crop diseases in the field.

植物病毒病会给农业生产造成巨大损失。病毒交叉保护是一种策略,利用温和病毒保护植物免受严重病毒株的后续感染。然而,这种方法仅限于针对相同病毒的保护。在本研究中,我们观察到,在烟草、番茄和辣椒植株中,苹果 geminivirus(AGV)的预接种减少了黄瓜花叶病毒、马铃薯病毒 X 和烟草花叶病毒等二次感染异源病毒的积累。转录表达分析表明,在感染早期接种 AGV 后,自噬相关基因的转录上调。相应地,自噬活性也在 AGV 感染后升高。有趣的是,自噬缺陷植物的 AGV 积累减少,这表明自噬激活促进了 AGV 在植物体内的感染。此外,AGV 的预接种还能提供交叉保护,防止烟草植物感染植物病原菌(Pseudomonas syringae)和真菌(Botrytis cinerea)。总之,我们的研究表明,AGV 是一种无症状病毒,可通过激活自噬途径在一定程度上保护植物免受严重病毒、真菌和细菌病害的侵袭,这凸显了它作为一种生物防治剂在田间防治多种植物作物病害的潜力。
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引用次数: 0
Modulation of liver metabolism and gut microbiota by Alhagi-honey alleviated heat stress-induced liver damage. 阿尔哈吉-蜂蜜对肝脏代谢和肠道微生物群的调节减轻了热应激引起的肝损伤。
Pub Date : 2024-09-30 DOI: 10.1007/s44154-024-00178-6
Jing Xu, Yundie Liu, Xuanhong Cao, Xinrui Guo, Jie Wang, Yang Liu, Hongda Zhou, Baohua Ma, Sha Peng

Alhagi-honey (AH) is a well-established traditional ethnic medicine with advantageous effects against diarrhea and headaches. We aimed to explore the preventive effect of AH on liver damage induced by heat stress (HS) and its underlying mechanism. HS models were established by thermostat, and mice were treated at 39 ℃ for 10 h, lasting for 7 days. Hematoxylin-eosin (H&E) staining and Periodic Acid-Schiff (PAS) staining were used for histological observation, and transmission electron microscopy (TEM) was used for ultrastructure examination of hepatocytes. Gut microbiota (GM) composition and liver metabolites were respectively analyzed by 16S rRNA sequencing and non-targeted metabolome sequencing. AH pretreatment alleviated liver damage caused by heat stress in mice. The main manifestation was that AH alleviated serum aspartate transferase (AST) and aspartate transaminase (ALT). It was found that AH improved symptoms of hepatocyte damage. In addition, the relative abundance of f_Rikenellaceae, g_Incertae_Sedis and s_Staphylococcus_Orisratti, g_Lachnoclostridium, g_GCA-900066575, and s_Alistipes_inops were modified by AH and these bacterial genera showed association with 6 metabolites (2- (3,4-dihydroxyphenyl) acetamide, 3-hydroxy-3-methylpentanedioic acid, PC (17:0/17:1), Y-L-Glutamy-L-glutamic acid, L-Isoleucine, 5-Methyluridine, 8,8-dimethyl-2-phenyl-4H,8H-pyrano [2, 3-h] chromen-4-one). The Pearson analysis also showed a strong correlation between these microbes and 2 risk indicators (AST and ALT) of liver damage. AH alleviated HS-induced liver damage by regulating liver metabolism and maintaining normal GM. It demonstrated that AH held potential as a prophylactic drug for the prevention of HS-induced liver damage.

阿尔哈吉蜂蜜(Alhagi-honey,AH)是一种历史悠久的传统民族药物,对腹泻和头痛有很好的疗效。我们的目的是探讨阿尔哈吉蜂蜜对热应激(HS)引起的肝损伤的预防作用及其内在机制。通过恒温箱建立热应激模型,在39 ℃下处理小鼠10小时,持续7天。组织学观察采用血红素-伊红(H&E)染色和过期酸-希夫(PAS)染色,透射电子显微镜(TEM)检查肝细胞的超微结构。16S rRNA测序和非靶向代谢组测序分别分析了肠道微生物群(GM)组成和肝脏代谢物。AH 预处理减轻了热应激对小鼠肝脏的损伤。主要表现为 AH 可缓解血清天门冬氨酸转氨酶(AST)和天门冬氨酸转氨酶(ALT)。研究发现,AH 可改善肝细胞损伤的症状。此外,AH 还改变了 f_Rikenellaceae、g_Incertae_Sedis 和 s_Staphylococcus_Orisratti、g_Lachnoclostridium、g_GCA-900066575 和 s_Alistipes_inops 的相对丰度,这些细菌属与 6 种代谢物(2-(3,4-二羟基苯基)乙酰胺、3-羟基-3-甲基戊二酸、PC(17:0/17:1)、Y-L-谷氨酸、L-异亮氨酸、5-甲基尿苷和 8,8-二甲基-2-苯基-4H,8H-吡喃 [2,3-h]色烯-4-酮)。皮尔逊分析还显示,这些微生物与肝损伤的两个风险指标(谷草转氨酶和谷丙转氨酶)之间存在很强的相关性。AH 可通过调节肝脏代谢和维持正常的 GM 来减轻 HS 引起的肝损伤。研究表明,AH 具有作为预防药物的潜力,可预防 HS 引起的肝损伤。
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引用次数: 0
Deciphering the roles of bacterial and fungal communities in the formation and quality of agarwood. 解密细菌和真菌群落在沉香木的形成和质量中的作用。
Pub Date : 2024-09-20 DOI: 10.1007/s44154-024-00179-5
Chen-Chen Fu, Bao-Xing Huang, Shan-Shan Wang, Yu-Chen Song, Dolkar Metok, Yu-Xiang Tan, Tai-Ping Fan, Alisdair R Fernie, Meisam Zargar, Yan Wang, Mo-Xian Chen, Liang-Wen Yu, Fu-Yuan Zhu

Aquilaria sinensis is a significant resin-producing plant worldwide that is crucial for agarwood production. Agarwood has different qualities depending on the method with which it is formed, and the microbial community structures that are present during these methods are also diverse. Furthermore, the microbial communities of plants play crucial roles in determining their health and productivity. While previous studies have investigated the impact of microorganisms on agarwood formation, they lack comprehensiveness, particularly regarding the properties of the microbial community throughout the entire process from seedling to adult to incense formation. We collected roots, stems, leaves, flowers, fruits and other tissues from seedlings, healthy plants and agarwood-producing plants to address this gap and assess the dominant bacterial species in the microbial community structures of A. sinensis at different growth stages and their impacts on growth and agarwood formation. The bacteria and fungi in these tissues were classified and counted from different perspectives. The samples were sequenced using the Illumina sequencing platform, and sequence analyses and species annotations were performed using a range of bioinformatics tools to assess the plant community compositions. An additional comparison of the samples was conducted using diversity analyses to assess their differences. This research revealed that Listeria, Kurtzmanomyces, Ascotaiwania, Acinetobacter, Sphingobium, Fonsecaea, Acrocalymma, Allorhizobium, Bacillus, Pseudomonas, Peethambara, and Debaryomyces are potentially associated with the formation of agarwood. Overall, the data provided in this article help us understand the important roles played by bacteria and fungi in the growth and agarwood formation process of A. sinensis, will support the theoretical basis for the large-scale cultivation of A. sinensis, and provide a basis for further research on microbial community applications in agarwood production and beyond.

Aquilaria sinensis 是世界上重要的树脂生产植物,对沉香生产至关重要。沉香的品质因形成方法而异,形成过程中的微生物群落结构也各不相同。此外,植物的微生物群落在决定植物的健康和生产力方面发挥着至关重要的作用。虽然之前的研究已经调查了微生物对沉香形成的影响,但这些研究缺乏全面性,尤其是在从幼苗到成材再到沉香形成的整个过程中微生物群落的特性。为了填补这一空白,我们采集了幼苗、健康植株和产香植株的根、茎、叶、花、果实和其他组织,并评估了不同生长阶段中华侧柏微生物群落结构中的优势菌种及其对生长和沉香形成的影响。从不同角度对这些组织中的细菌和真菌进行了分类和计数。使用 Illumina 测序平台对样本进行测序,并使用一系列生物信息学工具进行序列分析和物种注释,以评估植物群落组成。此外,还利用多样性分析对样本进行了比较,以评估它们之间的差异。研究发现,李斯特菌、库尔兹曼霉菌、Ascotaiwania、醋酐菌、Sphingobium、Fonsecaea、Acrocalymma、Allorhizobium、芽孢杆菌、假单胞菌、Peethambara 和 Debaryomyces 可能与沉香木的形成有关。总之,本文提供的数据有助于我们了解细菌和真菌在中华楠木的生长和琼脂木形成过程中发挥的重要作用,将为中华楠木的大规模栽培提供理论依据,并为进一步研究微生物群落在琼脂木生产及其他方面的应用提供基础。
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引用次数: 0
Time-restricted feeding relieves high temperature-induced impairment on meat quality by activating the Nrf2/HO-1 pathway, modification of muscle fiber composition, and enriching the polyunsaturated fatty acids in pigs. 限时饲喂通过激活 Nrf2/HO-1 通路、改变肌肉纤维组成和丰富猪的多不饱和脂肪酸,缓解了高温对肉质造成的损害。
Pub Date : 2024-09-14 DOI: 10.1007/s44154-024-00182-w
Zhaojian Li, Yiting Wang, Peng Yuan, Yanli Zhu, Ping Hu, Tongxing Song, Rui Liu, Hao-Yu Liu, Demin Cai

To assess the effects of a time-restricted feeding (TRF) regimen on meat quality of pigs exposed to high ambient temperature, a two-month feeding and heat treatment (HT) trial was conducted using a 2 × 2 factorial design. A total of 24 growing pigs (11.0 ± 1.9 kg) were randomly divided into four groups: thermal neutral group (NT, 24 ± 3 °C), HT group (exposed to a high temperature at 35 ± 2 °C from 11:00 to 15:00), TRF group and HT + TRF group (HT and TRF co-treatment group, n = 6 for each group). Pigs in TRF groups got access to feed within 5 h from 9:00 to14:00, while the others were fed at 6:00, 11:30, and 16:00. All pigs received the same diet during the trail. The results showed that HT increased the drip loss, shear force, lightness, and malondialdehyde production in Longissimus thoracis et lumborum (LTL) muscle. TRF reversely reduced the shear force and drip loss, accompanied by decreased intramuscular fat and increased moisture content. Enhanced fiber transformation from type 1 to type 2b and down-regulated expression of muscle growth-related genes were observed by HT, while TRF suppressed the fiber transformation and expression of muscle atrophy-related genes. Furthermore, TRF restored the diminished protein expressions of Nrf2 and HO-1 in LTL muscle by chronic HT. Accumulation of HSP70 in muscle of HT group was reduced by treatment of TRF. HT declined the expression of vital genes involved in fatty acids poly-desaturation and the proportion of (polyunsaturated fatty acids) PUFAs, mainly omega-6 in LTL muscle, while TRF group promoted the expression of poly-desaturation pathway and displayed the highest proportion of PUFAs. These results demonstrated that TRF relieved the chronic high temperature affected meat quality by the restored expression of Nrf2/HO-1 anti-oxidative cascade, modified muscle fiber composition, and enriched PUFAs in LTL muscle.

为了评估限时饲喂(TRF)方案对暴露于高环境温度下的猪的肉质的影响,采用 2 × 2 因式设计进行了为期两个月的饲喂和热处理(HT)试验。总共 24 头生长猪(11.0 ± 1.9 千克)被随机分为四组:热中性组(NT,24 ± 3 °C)、HT 组(11:00 至 15:00 暴露于 35 ± 2 °C的高温)、TRF 组和 HT + TRF 组(HT 和 TRF 联合处理组,每组 n = 6)。TRF组的猪在9:00至14:00的5小时内采食饲料,而其他组则在6:00、11:30和16:00采食饲料。所有猪在跟踪期间均摄入相同的饲料。结果表明,HT 增加了胸腰长肌(LTL)的滴水损失、剪切力、亮度和丙二醛的产生。TRF 则相反地降低了剪切力和滴水损失,同时减少了肌肉内脂肪,增加了水分含量。HT 增强了纤维从 1 型向 2b 型的转化,并下调了肌肉生长相关基因的表达,而 TRF 则抑制了纤维转化和肌肉萎缩相关基因的表达。此外,TRF还能恢复LTL肌肉中因长期HT而减少的Nrf2和HO-1蛋白表达。TRF还能减少HT组肌肉中HSP70的积累。HT降低了LTL肌肉中参与脂肪酸多元不饱和的重要基因的表达和多元不饱和脂肪酸(PUFAs)的比例,主要是ω-6,而TRF组则促进了多元不饱和途径的表达,并显示出最高的PUFAs比例。这些结果表明,TRF通过恢复LTL肌肉中Nrf2/HO-1抗氧化级联的表达、改变肌肉纤维组成和丰富PUFAs,缓解了长期高温对肉质的影响。
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引用次数: 0
MicroRNAs as potent regulators in nitrogen and phosphorus signaling transduction and their applications. 作为氮磷信号转导强效调控因子的微RNA及其应用。
Pub Date : 2024-09-12 DOI: 10.1007/s44154-024-00181-x
Yuzhang Yang, Yanting Liang, Chun Wang, Yanwei Wang

Nitrogen (N) and phosphorus (Pi) are essential macronutrients that affect plant growth and development by influencing the molecular, metabolic, biochemical, and physiological responses at the local and whole levels in plants. N and Pi stresses suppress the physiological activities of plants, resulting in agricultural productivity losses and severely threatening food security. Accordingly, plants have elaborated diverse strategies to cope with N and Pi stresses through maintaining N and Pi homeostasis. MicroRNAs (miRNAs) as potent regulators fine-tune N and Pi signaling transduction that are distinct and indivisible from each other. Specific signals, such as noncoding RNAs (ncRNAs), interact with miRNAs and add to the complexity of regulation. Elucidation of the mechanisms by which miRNAs regulate N and Pi signaling transduction aids in the breeding of plants with strong tolerance to N and Pi stresses and high N and Pi use efficiency by fine-tuning MIR genes or miRNAs. However, to date, there has been no detailed and systematic introduction and comparison of the functions of miRNAs in N and Pi signaling transduction from the perspective of miRNAs and their applications. Here, we summarized and discussed current advances in the involvement of miRNAs in N and Pi signaling transduction and highlighted that fine-tuning the MIR genes or miRNAs involved in maintaining N and Pi homeostasis might provide valuable sights for sustainable agriculture.

氮(N)和磷(Pi)是植物必需的大量营养元素,它们通过影响植物局部和整体水平的分子、代谢、生化和生理反应来影响植物的生长和发育。氮和钾胁迫会抑制植物的生理活动,导致农业生产力损失,严重威胁粮食安全。因此,植物制定了多种策略,通过维持 N 和 Pi 的平衡来应对 N 和 Pi 胁迫。微小核糖核酸(miRNA)作为强有力的调控因子,可微调 N 和 Pi 信号转导,这两种信号转导既相互独立又不可分割。非编码 RNA(ncRNA)等特定信号与 miRNA 相互作用,增加了调控的复杂性。阐明 miRNA 调控 N 和 Pi 信号转导的机制有助于通过微调 MIR 基因或 miRNA 培育出对 N 和 Pi 胁迫具有较强耐受性和较高 N 和 Pi 利用效率的植物。然而,迄今为止,还没有从miRNAs及其应用的角度对miRNAs在N和Pi信号转导中的功能进行详细、系统的介绍和比较。在此,我们总结并讨论了目前 miRNA 参与 N 和 Pi 信号转导的研究进展,并强调微调参与维持 N 和 Pi 平衡的 MIR 基因或 miRNA 可能会为可持续农业提供有价值的视角。
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引用次数: 0
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Stress biology
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