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Photoelectrotrophy: a novel mode of microbial metabolism and its biogeochemical effects 光电营养:一种新的微生物代谢模式及其生物地球化学效应
IF 10.6 1区 环境科学与生态学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-27 DOI: 10.1007/s11157-026-09763-9
Youming Diao, Zihan Xie, Xueying He, Yong Jiang, Shaofu Huang, Man Chen

Photoelectrotrophic metabolism (photoelectrotrophy) is an emerging energy-conversion mode in which non-photosynthetic microorganisms harvest light-derived electrons from photosensitizers (e.g., semiconductor minerals and natural organic matter) to fuel intracellular redox reactions and support growth. This concept broadens microbial energy acquisition beyond classical phototrophy and chemotrophy. However, it is still not fully understood how environmental conditions, metabolic pathways, and environmental geochemical factors affect photoelectrotrophic metabolism in microorganisms. This review synthesizes evidence for three prerequisites—sunlight, photosensitizers, and suitable microorganisms—and evaluates the likelihood that photoelectrotrophy occurs in natural environments based on insights from model systems. Proposed mechanisms of photoelectron uptake and transfer, including mediator-assisted and direct interfacial pathways, are then summarized and linked to major biogeochemical cycles of carbon, nitrogen, and other elements. Finally, environmental implications such as redox cycling and reactive oxygen species production are discussed, and opportunities and challenges for harnessing photoelectrotrophy in energy and environmental applications are outlined.

光电营养代谢(Photoelectrotrophic metabolism, photoelectrotrophy)是一种新兴的能量转换模式,在这种模式下,非光合微生物从光敏剂(如半导体矿物和天然有机物)中获取光导电子,为细胞内氧化还原反应提供燃料并支持生长。这一概念拓宽了微生物能量获取,超越了经典的光养和化学养。然而,环境条件、代谢途径和环境地球化学因素如何影响微生物的光电营养代谢仍未完全了解。这篇综述综合了三个先决条件的证据——阳光、光敏剂和合适的微生物——并根据模型系统的见解评估了在自然环境中发生光电保护的可能性。然后总结了光电子吸收和转移的机制,包括介质辅助和直接界面途径,并将其与碳、氮和其他元素的主要生物地球化学循环联系起来。最后,讨论了氧化还原循环和活性氧产生等环境影响,并概述了利用光电效应在能源和环境应用中的机遇和挑战。
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引用次数: 0
Origin and structure of manganese oxides and their reactivity towards metal(loid)s 锰氧化物的来源、结构及其对金属(样)的反应性
IF 10.6 1区 环境科学与生态学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-22 DOI: 10.1007/s11157-026-09762-w
Guillaume Herman Baheten Boassen, Mengqiang Zhu, Chao Li, Haohao Luo, Xingxing Wang, Chengshuai Liu, Jing Sun

Manganese (Mn) oxides, which originate from oxidative precipitation of soluble Mn(II), are a range of phases with different structural arrangements of MnO6 octahedra. These phases are widely distributed across diverse environmental contexts, often with relatively low abundance. Nonetheless, owing to variable oxidation states of Mn and the potent oxidative and adsorptive capacities of Mn oxides, the influences of Mn oxides on the cycling of contaminants and nutrients considerably exceed its own abundance. This review aims to synthesize current knowledge on the origin, structure, and reactivity of Mn oxides. First, the biotic and abiotic origins as well as the structures of common layered and tunnel Mn oxide phases are described. Subsequently, the reactivity of Mn oxides towards redox-insensitive and redox-sensitive metals and metalloids is discussed. In particular, the intricacies of the redox interactions between Mn oxides and metal(loid)s are illustrated with two main examples: (1) arsenic, a pervasive global groundwater problem, and (2) chromium, a serious pollutant due to wide industrialization. The influences from the structural nature of Mn oxides and from typical environmental variables on the interactions between Mn oxides and metal(loid)s are also summarized. Finally, some future research directions in this field are outlined.

Graphical Abstract

锰(Mn)氧化物是由可溶性锰(II)氧化沉淀而成的一系列具有不同结构排列的MnO6八面体相。这些相广泛分布在不同的环境背景中,通常丰度相对较低。然而,由于锰的可变氧化态以及锰氧化物的强大氧化和吸附能力,锰氧化物对污染物和营养物质循环的影响大大超过了其本身的丰度。本文综述了锰氧化物的来源、结构和反应性。首先,介绍了层状和隧道状锰氧化物相的生物和非生物起源以及结构。随后,讨论了锰氧化物对氧化还原不敏感和氧化还原敏感金属和类金属的反应性。特别是,锰氧化物与金属(类)之间的氧化还原相互作用的复杂性通过两个主要例子来说明:(1)砷,一个普遍存在的全球地下水问题;(2)铬,一个由于广泛工业化而造成的严重污染物。本文还总结了锰氧化物的结构性质和典型环境变量对锰氧化物与金属(样物质)相互作用的影响。最后,对该领域今后的研究方向进行了展望。图形抽象
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引用次数: 0
Synergistic bioremediation of polycyclic aromatic hydrocarbons and heavy metals: A comprehensive review 多环芳烃与重金属协同生物修复技术综述
IF 10.6 1区 环境科学与生态学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-12 DOI: 10.1007/s11157-025-09759-x
Ajeet Singh Chauhan, Chiu-Wen Chen, Cheng-Di Dong

Polycyclic aromatic hydrocarbons (PAHs) and heavy metals (HMs) are growing organic and inorganic pollutants in blue ecosystems due to increasing maritime traffic, industrial effluents, and other anthropogenic activities. Over the last two decades, microbial remediation has emerged as a sustainable strategy for mitigating PAHs and HMs. However, the co-occurrence of PAHs and HMs presents considerable challenges to microbial degradation, as HMs can interfere with PAH-degrading enzymatic pathways. Interestingly, sub-inhibitory concentrations of certain HMs may induce adaptive microbial responses, including enhanced biofilm formation, extracellular polymeric substance production, and activation of stress-response mechanisms. This review highlights recent advances in microbial bioremediation strategies targeting PAH–HM co-contamination. Advanced kinetic models and molecular insights reveal complex interactions, highlighting the need to optimize microbial strategies for co-contaminated site remediation. Innovative approaches such as CRISPR-Cas-based gene editing are being employed to enhance microbial resistance and catabolic efficiency. In addition, algae–microbe consortia and biofilm-based systems offer synergistic potential in marine environments. Emerging tools including electro-bioremediation, metagenomics, and artificial intelligence (AI)-driven monitoring systems are contributing to a deeper understanding of in situ microbial functions and enabling real-time optimization of remediation processes. These integrative strategies not only improve pollutant removal efficiency but also align with sustainable and scalable aquatic pollution management practices. The convergence of environmental microbiology, synthetic biology, and digital technologies offers a transformative framework to tackle complex pollutant mixtures and supports global sustainable development goals (SDG 6-clean water and sanitation).

Graphical Abstract

由于海上交通、工业污水和其他人为活动的增加,多环芳烃(PAHs)和重金属(HMs)是蓝色生态系统中日益增长的有机和无机污染物。在过去的二十年中,微生物修复已成为减轻多环芳烃和HMs的可持续策略。然而,多环芳烃和HMs的共存给微生物降解带来了相当大的挑战,因为HMs会干扰多环芳烃降解酶的途径。有趣的是,某些HMs的亚抑制浓度可能会诱导适应性微生物反应,包括增强生物膜的形成、细胞外聚合物物质的产生和应激反应机制的激活。本文综述了针对多环芳烃- hm共污染的微生物生物修复策略的最新进展。先进的动力学模型和分子洞察力揭示了复杂的相互作用,突出了优化共污染场地修复的微生物策略的必要性。基于crispr - cas的基因编辑等创新方法正被用于增强微生物耐药性和分解代谢效率。此外,藻类-微生物联合体和基于生物膜的系统在海洋环境中提供了协同潜力。包括电生物修复、宏基因组学和人工智能(AI)驱动的监测系统在内的新兴工具有助于更深入地了解原位微生物的功能,并实现修复过程的实时优化。这些综合战略不仅提高了污染物去除效率,而且与可持续和可扩展的水生污染管理实践相一致。环境微生物学、合成生物学和数字技术的融合为解决复杂的污染物混合物提供了一个变革性框架,并支持全球可持续发展目标(可持续发展目标6——清洁水和卫生设施)。图形抽象
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引用次数: 0
Efficient removal of per-polyfluoroalkyl substances (PFAS) from water by using membrane distillation technology: a review 膜蒸馏技术高效去除水中全氟烷基物质的研究进展
IF 10.6 1区 环境科学与生态学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-09 DOI: 10.1007/s11157-025-09760-4
Isik Gulver, Oyku Mutlu-Salmanli, Ismail Koyuncu

The toxic characteristics and environmental persistence of per- and polyfluoroalkyl substances (PFAS) have made the removal of such substances from water a critical concern. PFAS have a hydrophobic and oleophobic tendency due to their unique molecular structure, their chemical inertness and structural stability make the traditional methods of degradation and removal almost ineffective in the water environment. This review examines the existing technologies of PFAS removal in water with their advantages and drawbacks, and particularly focus on membrane distillation (MD) as an emerging separation-based approach. In contrast to pressure-driven processes such as nanofiltration and reverse osmosis, MD operates at lower hydraulic pressures and exhibits reduced fouling susceptibility under certain operating conditions, while maintaining high PFAS rejections. Reported studies indicate that direct contact membrane distillation (DCMD) can achieve PFAS rejection rates up to 96%. Current literature suggests that the hydrophobic properties of PFAS molecules promotes the effectiveness of MD, in which hydrophobic membranes are also employed, to achieve notable rejection rates of PFAS. Furthermore, the review covers promising developments that may be made in MD systems which include the use of new membrane materials and optimization of the operating conditions. However, key challenges including membrane fouling, wetting risk, and relatively high thermal energy demand are also critically assessed. Although there have been comprehensive reviews on the PFAS treatment technologies and MD as individual subjects, there has been no dedicated review on PFAS removal using MD. This review identifies current knowledge gaps and outlines future research directions required to enhance performance, scalability, and economic feasibility.

全氟烷基和多氟烷基物质(PFAS)的毒性特性和环境持久性使得从水中去除这类物质成为一个关键问题。由于其独特的分子结构,PFAS具有疏水疏油倾向,其化学惰性和结构稳定性使得传统的降解和去除方法在水环境中几乎无效。本文综述了现有的去除水中PFAS的技术及其优缺点,重点介绍了膜蒸馏(MD)作为一种新兴的分离方法。与纳滤和反渗透等压力驱动的工艺相比,MD在较低的液压压力下运行,在某些操作条件下表现出较低的污垢敏感性,同时保持较高的PFAS截留率。已有研究表明,直接接触膜蒸馏(DCMD)可使PFAS的去除率高达96%。目前的文献表明,PFAS分子的疏水特性促进了MD的有效性,其中也采用疏水膜,以实现显著的PFAS排异率。此外,综述还涵盖了MD系统中可能取得的有希望的发展,包括使用新的膜材料和优化操作条件。然而,关键挑战包括膜污染、润湿风险和相对较高的热能需求也被严格评估。虽然已经对PFAS处理技术和MD作为个体受试者进行了全面的综述,但尚未对使用MD去除PFAS进行专门的综述。本综述确定了当前的知识空白,并概述了提高性能、可扩展性和经济可行性所需的未来研究方向。
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引用次数: 0
Recent advancements in bacterial extracellular polymeric substances based flocculants for wastewater treatment 细菌胞外高分子絮凝剂在污水处理中的研究进展
IF 10.6 1区 环境科学与生态学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-02 DOI: 10.1007/s11157-025-09752-4
Srinivasan R. Kaarmukhilnilavan, Ammaiyappan Selvam, Jonathan W. C. Wong, Chockalingam Muthiah Ramakritinan, Kumarasamy Murugesan

The bacterial extracellular polymeric substances (EPS) based flocculants significantly receive interest as a green and sustainable alternative for the wastewater treatment over polyacrylamides. However, despite of their initial progress, currently these materials are stagnated without significant advancements. It is due to the poor understanding of their chemical structure, synthesis pathways, molecular regulation and surface chemistry of flocculation. The polysaccharides are serving as the major backbones for the EPS flocculants. Particularly, amino sugars, neutral sugars, uronic acids, and amino acids are found to be their building blocks. However, many bioflocculants have unprecedented proportions of unrevealed “dark matters”. Advanced molecular techniques and polymer purification systems are paving the way to uncover such materials. The wastewater treatment efficacy of EPS flocculants has been established in various types of wastewaters. Their ability of enhancing various wastewater parameters namely turbidity, COD, suspended solids, heavy metals and dyes promote them as a potential alternative for synthetic flocculants. Among several theories, the electrostatic patching theory best explains their flocculation mechanism especially for cation dependent EPS flocculants. Compared with polyacrylamides, the substrate-to-product conversion level is several folds lower for EPS. The largescale operations have to face various challenges including lower yield, failure of runs and critical purification practices. However, these drawbacks can be overcome by advanced techniques such as genetic engineering. Moreover, several studies have indicated that the EPS flocculants can be produced from cheap waste substrates that paves a way for sustainable productivity.

Graphical abstract

以细菌胞外聚合物(EPS)为基础的絮凝剂作为一种绿色和可持续的废水处理替代聚丙烯酰胺而备受关注。然而,尽管它们取得了初步进展,但目前这些材料停滞不前,没有取得重大进展。这是由于对它们的化学结构、合成途径、分子调控和絮凝表面化学的了解不够。多糖是EPS絮凝剂的主要骨架。特别是,氨基糖、中性糖、糖醛酸和氨基酸被发现是它们的组成部分。然而,许多生物絮凝剂中未发现的“暗物质”的比例是前所未有的。先进的分子技术和聚合物净化系统正在为发现这些材料铺平道路。EPS絮凝剂对不同类型废水的处理效果已得到证实。它们能够提高各种废水参数,即浊度、COD、悬浮固体、重金属和染料,使其成为合成絮凝剂的潜在替代品。在几种理论中,静电修补理论最好地解释了它们的絮凝机理,特别是阳离子依赖性EPS絮凝剂。与聚丙烯酰胺相比,EPS的基材到产品的转化率低了几倍。大规模操作必须面对各种挑战,包括低产量,运行失败和关键的净化操作。然而,这些缺点可以通过诸如基因工程等先进技术来克服。此外,一些研究表明,EPS絮凝剂可以从廉价的废基质中生产,这为可持续生产铺平了道路。图形抽象
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引用次数: 0
Interactions of Miscanthus × giganteus with microorganisms in degraded lands: potential for ecosystem restoration 退化土地上芒草与微生物的相互作用:生态系统恢复的潜力
IF 10.6 1区 环境科学与生态学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-23 DOI: 10.1007/s11157-025-09758-y
Diana Polanská Nebeská, Karim Suhail Al Souki, Nayanika Borah, Kumar Pranaw, Josef Trögl

Land degradation caused by industrial activity, pollution, and unsustainable land use poses a significant threat to global ecosystem functions. Miscanthus × giganteus (M × g), a sterile C4 perennial grass known for its high biomass productivity and tolerance to abiotic stress, has gained increasing attention as a phytomanagement crop for restoring degraded lands. A growing body of evidence suggests that the effectiveness of M × g in these environments is strongly mediated by its interactions with rhizospheric, endophytic, and mycorrhizal microorganisms. This review synthesizes current knowledge on the structure, function, and ecological roles of microbial communities associated with M × g, with a focus on their contributions to plant growth, nutrient acquisition, stress tolerance, and contaminant degradation. Particular emphasis is placed on plant growth-promoting rhizobacteria (PGPR), endophytes, and arbuscular mycorrhizal fungi (AMF), as well as their roles in enhancing soil microbial activity, carbon sequestration, and phytoremediation of heavy metals and petroleum-based pollutants. While numerous studies have demonstrated positive microbial effects on M × g performance under controlled conditions, field-based evidence remains limited. Future research should prioritize long-term, multi-scale investigations and the development of tailored microbial inoculants for use in phytomanagement systems. By integrating plant–microbe interactions, M × g cultivation can be optimized not only for biomass production but also for ecological restoration of degraded environments.

Graphical Abstract

工业活动、污染和不可持续的土地利用造成的土地退化对全球生态系统功能构成重大威胁。芒草(Miscanthus × giganteus, M × g)是一种不育的C4多年生草本植物,具有高生物量生产力和耐非生物胁迫的特点,作为恢复退化土地的植物管理作物受到越来越多的关注。越来越多的证据表明,mg在这些环境中的有效性在很大程度上是由其与根际、内生和菌根微生物的相互作用介导的。本文综述了与小麦相关的微生物群落的结构、功能和生态作用,重点介绍了它们对植物生长、养分获取、逆境耐受性和污染物降解的贡献。特别强调植物生长促进菌根菌(PGPR),内生菌和丛枝菌根真菌(AMF),以及它们在提高土壤微生物活性,碳固存和重金属和石油基污染物的植物修复中的作用。虽然许多研究已经证明了微生物在受控条件下对M × g性能的积极影响,但基于现场的证据仍然有限。未来的研究应优先考虑长期、多尺度的调查和开发用于植物管理系统的定制微生物接种剂。通过整合植物与微生物的相互作用,M × g栽培不仅可以优化生物量生产,还可以优化退化环境的生态恢复。图形抽象
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引用次数: 0
CO2 from biogas: valorisation, economic and environmental impacts in circular carbon systems 沼气中的二氧化碳:循环碳系统的价值、经济和环境影响
IF 10.6 1区 环境科学与生态学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-23 DOI: 10.1007/s11157-025-09755-1
Shivali Sahota, Lidia Lombardi, Dhruv Singh, Cathal O’Donoghue, Cathal Geoghegan, Ulrika Rova, Paul Christakopoulos, Leonidas Matsakas, Omprakash Sarkar

The production of biogas through anaerobic digestion (AD) of organic-renewable feedstocks is recognized as a viable solution within the renewable energy sector. Biogas typically contains a methane concentration ranging from 60 to 70%, presenting a significant opportunity for energy generation. However, the co-generated carbon dioxide (CO2), which constitutes approximately 30–40% of biogas, poses challenges to overall energy efficiency, thus necessitating the implementation of purification methods to enhance methane concentrations. It is noteworthy that the production of one ton of biomethane results in the generation of approximately two tons of biogenic CO2. This reality opens avenues for carbon capture, storage, and valorization strategies. The biogas industry is beginning to recognize CO2 not merely as a byproduct to be discarded, but as a valuable resource for the synthesis of biomethane, chemicals, fuels, and even building materials. There is a growing interest in utilizing biogenic CO2 as a climate-friendly feedstock, with “bio-Carbon Capture and Utilization” (bio-CCU) practices facilitating the development of sustainable fuels, chemicals, and materials. The article extends to various methods of valorization for biogenic CO2, providing an analysis of techniques for separating and upgrading CO2 derived from biogas. This assessment encompasses both physical and biological methodologies within the carbon capture, utilization, and storage (CCUS) framework. The article further demonstrates both in-situ and ex-situ processes, including biological methodologies that employ microorganisms for CO2 conversion, as well as thermo-physicochemical processes that transform CO2 into biobased products. Additionally, the article demonstrates the economic and environmental advantages associated with the strategic utilization of biogenic CO2. Repurposing this resource is vital for achieving sustainability goals, particularly in renewable energy sectors, where it can significantly enhance energy efficiency and reduce waste. Finally, the article emphasizes the importance of these practices in climate change mitigation, advocating for a circular economy that prioritizes carbon reuse over atmospheric emissions, thus contributing to the advancement of a sustainable future.

通过有机可再生原料的厌氧消化(AD)生产沼气被认为是可再生能源领域的可行解决方案。沼气通常含有60%到70%的甲烷浓度,这为能源生产提供了重要的机会。然而,共产的二氧化碳(CO2)约占沼气的30-40%,对整体能源效率构成挑战,因此需要实施净化方法来提高甲烷浓度。值得注意的是,生产一吨生物甲烷会产生大约两吨生物源性二氧化碳。这一现实为碳捕获、储存和增值策略开辟了道路。沼气工业开始认识到,二氧化碳不仅是一种需要丢弃的副产品,而且是合成生物甲烷、化学品、燃料甚至建筑材料的宝贵资源。人们对利用生物二氧化碳作为气候友好型原料的兴趣日益浓厚,“生物碳捕获和利用”(bio-CCU)实践促进了可持续燃料、化学品和材料的发展。本文扩展到生物源CO2的各种增值方法,分析了从沼气中分离和升级CO2的技术。该评估包括碳捕获、利用和封存(CCUS)框架内的物理和生物方法。文章进一步展示了原位和非原位过程,包括利用微生物进行二氧化碳转化的生物方法,以及将二氧化碳转化为生物基产品的热物理化学过程。此外,文章还论证了战略性利用生物源二氧化碳的经济和环境优势。重新利用这种资源对于实现可持续发展目标至关重要,特别是在可再生能源部门,它可以显著提高能源效率并减少浪费。最后,文章强调了这些做法在减缓气候变化方面的重要性,倡导将碳再利用置于大气排放之上的循环经济,从而有助于推进可持续的未来。
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引用次数: 0
Recent advances in zearalenone degradation: integrating physical, chemical, biological, and innovative methods 玉米赤霉烯酮降解的最新进展:综合物理、化学、生物和创新方法
IF 10.6 1区 环境科学与生态学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-12 DOI: 10.1007/s11157-025-09757-z
Mukhtar Ahmad, Deng Kun, Wang Hui, Jiang Wei

Zearalenone (ZEN) is a thermostable, lipophilic, non-steroidal estrogenic mycotoxin produced by Fusarium spp. that persistently contaminates cereals and feed, posing major risks to food safety, human and animal health, and environmental sustainability. Conventional physical and chemical detoxification methods often compromise nutritional quality and leave toxic residues. This review critically evaluates recent advances in ZEN degradation, integrating physical, chemical, biological, and emerging hybrid approaches, and compares their mechanistic efficiency and applicability. Biological systems employing microorganisms and recombinant enzymes such as peroxidases, laccases, and lactonases exhibit high substrate specificity and eco-compatibility, yet remain limited by enzyme stability and cofactor dependence. Innovative methods including cold atmospheric plasma, polyphenol-mediated redox systems, and nanobiotechnology enhance degradation via reactive species generation, electron transfer, or catalytic surface interactions. Conceptually, this review synthesizes cross-disciplinary progress linking enzymatic catalysis with nanomaterial-assisted detoxification, highlighting hybrid enzyme-nanoparticle systems and synthetic-biology-driven enzyme engineering as promising solutions. Persistent gaps include industrial scalability and regulatory acceptance. Future research should emphasize integrated multi-modal frameworks that couple enzymatic precision with nanomaterial reactivity to achieve efficient, residue-free, and sustainable ZEN detoxification.

玉米赤霉烯酮(ZEN)是一种耐热、亲脂、非甾体雌性真菌毒素,由镰刀菌产生,持续污染谷物和饲料,对食品安全、人类和动物健康以及环境可持续性构成重大风险。传统的物理和化学解毒方法往往会损害营养质量,并留下有毒残留物。这篇综述批判性地评估了ZEN降解的最新进展,整合了物理、化学、生物和新兴的混合方法,并比较了它们的机制效率和适用性。采用微生物和重组酶(如过氧化物酶、漆酶和内酯酶)的生物系统表现出高底物特异性和生态兼容性,但仍然受到酶稳定性和辅因子依赖性的限制。包括冷大气等离子体、多酚介导的氧化还原系统和纳米生物技术在内的创新方法通过反应物质的产生、电子转移或催化表面相互作用来增强降解。从概念上讲,本文综述了将酶催化与纳米材料辅助解毒联系起来的跨学科进展,强调了酶-纳米颗粒混合系统和合成生物学驱动的酶工程是有前途的解决方案。持续存在的差距包括工业可伸缩性和监管接受度。未来的研究应强调整合多模式框架,将酶的精度与纳米材料的反应性结合起来,以实现高效、无残留和可持续的ZEN解毒。
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引用次数: 0
Microbial aggregates and functional materials for mitigating soil nitrogen loss: a review 缓解土壤氮素流失的微生物聚集体与功能材料研究进展
IF 10.6 1区 环境科学与生态学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-09 DOI: 10.1007/s11157-025-09754-2
Nannan Li, Guankai Qiu, Heng Chen, Jingying Wang, Hongwen Yu

Nitrogen (N) plays a critical role in crop growth, development, and yield. In global agriculture, however, about 40 to 60 percent of nitrogen applied to soil is lost through nitrous oxide (N2O) emissions, nitrate (NO3) leaching, and ammonia (NH3) volatilization, resulting in significantly reduced crop yields and environmental issues, such as water body eutrophication, soil degradation, and increased greenhouse gas emissions. While a range of mitigation strategies have been explored, effective and scalable solutions that simultaneously enhance N retention in soil and promote crop uptake remain limited. In this context, integrated approaches that combine microbial aggregates with functional materials represent a promising yet underexplored pathway. This review examines the structural functions of microbial aggregates and the properties of common functional materials, emphasizing their mechanisms of action in reducing soil nitrogen loss and their potential contributions to mitigating environmental pollution. Additionally, the physical, chemical, and biological interactions during the synergistic application of these technologies were investigated, resulting in a 14–26% increase in soil nitrogen retention and a 15–35% increase in crop yields through improved inter-root nitrogen supply. This review aims to provide practical strategies for reducing agricultural nitrogen loss and its associated environmental hazards while promoting sustainable agricultural practices.

氮(N)在作物生长发育和产量中起着关键作用。然而,在全球农业中,施用于土壤的约40%至60%的氮通过一氧化二氮(N2O)排放、硝态氮(NO3−)浸出和氨(NH3)挥发而流失,导致作物产量显著下降,并引发水体富营养化、土壤退化和温室气体排放增加等环境问题。虽然已经探索了一系列缓解战略,但同时增强土壤中氮潴留和促进作物吸收的有效和可扩展的解决办法仍然有限。在这种情况下,将微生物聚集体与功能材料相结合的综合方法代表了一种有希望但尚未充分探索的途径。本文综述了微生物聚集体的结构功能和常用功能材料的性质,重点介绍了它们在减少土壤氮素流失和减轻环境污染方面的作用机制。此外,研究了这些技术协同应用过程中的物理、化学和生物相互作用,结果表明,通过改善根间氮供应,土壤氮潴留增加14-26%,作物产量增加15-35%。本综述旨在为减少农业氮素损失及其相关环境危害提供切实可行的策略,同时促进可持续农业实践。
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引用次数: 0
How viable but non-culturable (VBNC) bacteria persist in aquaculture and endanger fish health and water safety 在水产养殖中存在多少可活但不可培养的细菌(VBNC)并危害鱼类健康和水安全
IF 10.6 1区 环境科学与生态学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-06 DOI: 10.1007/s11157-025-09756-0
Hyeon-Ju Lee, Si-Heon Song, Eun-Seop Lee, Eon-Bee Lee

The viable but non-culturable (VBNC) state represents a unique survival strategy adopted by many aquatic bacterial pathogens under environmental stress. In aquaculture environments, factors such as low temperatures, nutrient imbalances, oxidative stress, and disinfection treatments (e.g., UV or chlorine) can induce bacteria to enter the VBNC state, wherein they remain metabolically active yet undetectable using traditional culturing methods. This dormant state allows pathogens such as Vibrio spp., Edwardsiella spp., and Aeromonas spp. to evade standard monitoring systems, persist in aquaculture systems, and later resuscitate under favorable conditions, regaining pathogenicity and contributing to disease outbreaks. VBNC cells also exhibit increased antibiotic resistance and may serve as reservoirs for resistance genes, amplifying concerns about treatment failure and the spread of antimicrobial resistance. Recent advancements in molecular diagnostics, including PMA-qPCR, FISH, and omics-integrated AI detection, have improved the identification of VBNC populations. Furthermore, resuscitation mechanisms involving quorum sensing, oxidative stress regulators (e.g., RpoS, OxyR), and resuscitation-promoting factors (Rpfs) are being actively investigated. This review provides a comprehensive overview of the VBNC state in aquatic pathogens, with a focus on its environmental triggers, physiological and molecular characteristics, implications for disease transmission, and recent advances in detection and control strategies. A deeper understanding of VBNC dynamics is essential for improving aquatic animal health, enhancing biosecurity, and establishing sustainable aquaculture practices.

活但不可培养(VBNC)状态是许多水生病原菌在环境胁迫下采取的一种独特的生存策略。在水产养殖环境中,低温、营养失衡、氧化应激和消毒处理(如紫外线或氯)等因素可诱导细菌进入VBNC状态,在这种状态下,它们保持代谢活性,但用传统的培养方法无法检测到。这种休眠状态允许弧菌、爱德华氏菌和气单胞菌等病原体逃避标准监测系统,在水产养殖系统中持续存在,并在有利条件下复苏,重新获得致病性并导致疾病暴发。VBNC细胞还表现出增强的抗生素耐药性,并可能成为耐药基因的储存库,这加剧了对治疗失败和抗微生物药物耐药性传播的担忧。分子诊断的最新进展,包括PMA-qPCR, FISH和组学集成AI检测,已经改进了VBNC群体的识别。此外,涉及群体感应、氧化应激调节因子(如RpoS、OxyR)和复苏促进因子(Rpfs)的复苏机制正在积极研究中。本文综述了水生病原体中VBNC状态的全面概述,重点介绍了其环境触发因素、生理和分子特征、对疾病传播的影响以及检测和控制策略的最新进展。深入了解VBNC动态对于改善水生动物健康、加强生物安全以及建立可持续水产养殖实践至关重要。
{"title":"How viable but non-culturable (VBNC) bacteria persist in aquaculture and endanger fish health and water safety","authors":"Hyeon-Ju Lee,&nbsp;Si-Heon Song,&nbsp;Eun-Seop Lee,&nbsp;Eon-Bee Lee","doi":"10.1007/s11157-025-09756-0","DOIUrl":"10.1007/s11157-025-09756-0","url":null,"abstract":"<div><p>The viable but non-culturable (VBNC) state represents a unique survival strategy adopted by many aquatic bacterial pathogens under environmental stress. In aquaculture environments, factors such as low temperatures, nutrient imbalances, oxidative stress, and disinfection treatments (e.g., UV or chlorine) can induce bacteria to enter the VBNC state, wherein they remain metabolically active yet undetectable using traditional culturing methods. This dormant state allows pathogens such as <i>Vibrio</i> spp., <i>Edwardsiella</i> spp., and <i>Aeromonas</i> spp. to evade standard monitoring systems, persist in aquaculture systems, and later resuscitate under favorable conditions, regaining pathogenicity and contributing to disease outbreaks. VBNC cells also exhibit increased antibiotic resistance and may serve as reservoirs for resistance genes, amplifying concerns about treatment failure and the spread of antimicrobial resistance. Recent advancements in molecular diagnostics, including PMA-qPCR, FISH, and omics-integrated AI detection, have improved the identification of VBNC populations. Furthermore, resuscitation mechanisms involving quorum sensing, oxidative stress regulators (e.g., RpoS, OxyR), and resuscitation-promoting factors (Rpfs) are being actively investigated. This review provides a comprehensive overview of the VBNC state in aquatic pathogens, with a focus on its environmental triggers, physiological and molecular characteristics, implications for disease transmission, and recent advances in detection and control strategies. A deeper understanding of VBNC dynamics is essential for improving aquatic animal health, enhancing biosecurity, and establishing sustainable aquaculture practices.</p></div>","PeriodicalId":754,"journal":{"name":"Reviews in Environmental Science and Bio/Technology","volume":"25 1","pages":""},"PeriodicalIF":10.6,"publicationDate":"2025-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145729961","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Reviews in Environmental Science and Bio/Technology
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