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Detachment forces during parallel-plate gap separation mediated by a simple yield-stress fluid 由简单屈服应力流体介导的平行板间隙分离过程中的脱离力。
IF 1.8 4区 物理与天体物理 Q4 CHEMISTRY, PHYSICAL Pub Date : 2024-01-23 DOI: 10.1140/epje/s10189-023-00397-1
Vítor Hugo de Oliveira Pereira, Wilson Barros Jr.

In this work we have monitored the multiple stages of the normal traction force response of a yield-stress fluid confined between two circular parallel plates that are separated at constant velocity. At narrow initial gaps, the air–fluid interface suffers from the Saffman–Taylor instability, confirmed by visual inspection of fingering patterns imprinted on the fluid. At larger initial gaps, the fluid preserves the initially imposed circular symmetry of the confining plates, indicating the absence of instability. Due to the system characteristics and experimental environment, the multiple traction force contributions occurred in cascade, permitting us to isolate the adhesion responses associated with viscosity, capillarity, and yield stress. Employing a standard Herschel–Bulkley model, we assessed the scaling of the traction force in multiple regimes—specifically, evaluating the dependencies of the fingering to yield-stress transitions.

在这项研究中,我们对封闭在以恒定速度分开的两块圆形平行板之间的屈服应力流体的法向牵引力响应的多个阶段进行了监测。在初始间隙较小的情况下,空气-流体界面会出现萨夫曼-泰勒不稳定性,通过目测流体上的指印图案可以证实这一点。在初始间隙较大时,流体保持了最初施加的约束板圆形对称性,表明不存在不稳定性。由于系统特性和实验环境的原因,多重牵引力的作用是级联发生的,这使我们能够分离出与粘度、毛细管性和屈服应力相关的粘附反应。采用标准的赫歇尔-布克雷模型,我们评估了牵引力在多种状态下的缩放比例,特别是评估了指法到屈服应力转换的依赖关系。
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引用次数: 0
Scaling regimes for wormlike chains confined to cylindrical surfaces under tension 局限于圆柱表面的蠕虫链在张力作用下的缩放机制。
IF 1.8 4区 物理与天体物理 Q4 CHEMISTRY, PHYSICAL Pub Date : 2024-01-22 DOI: 10.1140/epje/s10189-023-00384-6
Greg Morrison, D. Thirumalai

We compute the free energy of confinement (mathcal{{F}}) for a wormlike chain (WLC), with persistence length (l_p), that is confined to the surface of a cylinder of radius R under an external tension f using a mean field variational approach. For long chains, we analytically determine the behavior of the chain in a variety of regimes, which are demarcated by the interplay of (l_p), the Odijk deflection length ((l_d=(R^2l_p)^{1/3})), and the Pincus length ((l_f = {k_BT}/{f}), with (k_BT) being the thermal energy). The theory accurately reproduces the Odijk scaling for strongly confined chains at (f=0), with (mathcal{{F}}sim Ll_p^{-1/3}R^{-2/3}). For moderate values of f, the Odijk scaling is discernible only when ({l_p}gg R) for strongly confined chains. Confinement does not significantly alter the scaling of the mean extension for sufficiently high tension. The theory is used to estimate unwrapping forces for DNA from nucleosomes.

我们利用均值场变分法计算了蠕虫链(WLC)的约束自由能[计算公式:见正文],蠕虫链的持续长度为[计算公式:见正文],在外部张力 f 的作用下,蠕虫链被约束在半径为 R 的圆柱体表面。对于长链,我们分析确定了链在各种状态下的行为,这些状态由[公式:见正文]、奥迪克偏转长度([公式:见正文])和平卡斯长度([公式:见正文],[公式:见正文]为热能)的相互作用来划分。该理论准确地再现了强约束链在[公式:见正文]与[公式:见正文]之间的 Odijk 缩放。对于中等值的 f,只有当强封闭链的[式:见正文]时,才能看到 Odijk 缩放。在张力足够大的情况下,密闭并不会明显改变平均延伸率的比例。该理论用于估算核糖体中 DNA 的解缠力。
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引用次数: 0
Correction: Convective mixing in porous media: a review of Darcy, pore-scale and Hele-Shaw studies 更正:多孔介质中的对流混合:达西、孔隙尺度和赫勒-肖研究综述。
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2024-01-11 DOI: 10.1140/epje/s10189-023-00401-8
Marco De Paoli
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引用次数: 0
Ions and dipoles in electric field: nonlinear polarization and field-dependent chemical reaction 电场中的离子和偶极子:非线性极化和随电场变化的化学反应。
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2024-01-11 DOI: 10.1140/epje/s10189-023-00398-0
Akira Onuki

We investigate electric-field effects in dilute electrolytes with nonlinear polarization. As a first example of such systems, we add a dipolar component with a relatively large dipole moment (mu _0) to an aqueous electrolyte. As a second example, the solvent itself exhibits nonlinear polarization near charged objects. For such systems, we present a Ginzburg-Landau free energy and introduce field-dependent chemical potentials, entropy density, and stress tensor, which satisfy general thermodynamic relations. In the first example, the dipoles accumulate in high-field regions, as predicted by Abrashikin et al.[Phys.Rev.Lett. 99, 077801 (2007)]. Finally, we consider the case, where Bjerrum ion pairs form a dipolar component with nonlinear polarization. The Bjerrum dipoles accumulate in high-field regions, while field-induced dissociation was predicted by Onsager [J. Chem. Phys.2, 599 (1934)]. We present an expression for the field-dependent association constant K(E), which depends on the field strength nonmonotonically.

我们研究了具有非线性极化的稀电解质中的电场效应。作为此类系统的第一个例子,我们在水性电解质中加入了偶极矩相对较大的偶极成分[公式:见正文]。第二个例子是,溶剂本身在带电物体附近表现出非线性极化。对于这类系统,我们提出了金兹堡-朗道自由能,并引入了与场有关的化学势、熵密度和应力张量,它们满足一般的热力学关系。在第一个例子中,偶极子在高场区域积聚,正如 Abrashikin 等人[Phys.Rev.Lett. 99, 077801 (2007)] 所预测的那样。最后,我们考虑了比尤鲁姆离子对形成非线性极化偶极分量的情况。Bjerrum 偶极子在高场区聚集,而场诱导解离是由 Onsager 预测的[J. Chem. Phys.2, 599 (1934)]。我们给出了场相关关联常数 K(E) 的表达式,它与场强非单调相关。
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引用次数: 0
Physical insights into biological memory using phospholipid membranes 利用磷脂膜对生物记忆的物理洞察。
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2024-01-11 DOI: 10.1140/epje/s10189-023-00391-7
Dima Bolmatov, C. Patrick Collier, John Katsaras, Maxim O. Lavrentovich

Electrical signals may propagate along neuronal membranes in the brain, thus enabling communication between nerve cells. In doing so, lipid bilayers, fundamental scaffolds of all cell membranes, deform and restructure in response to such electrical activity. These changes impact the electromechanical properties of the membrane, which then physically store biological memory. This memory can exist either over a short or long period of time. Traditionally, biological memory is defined by the strengthening or weakening of transmissions between individual neurons. Here, we show that electrical stimulation may also alter the properties of the lipid membrane, thus pointing toward a novel mechanism for memory storage. Furthermore, based on the analysis of existing electrophysiological data, we study molecular mechanisms underlying the long-term potentiation in phospholipid membranes. Finally, we examine possible relationships between the memory capacitive properties of lipid membranes, neuronal learning, and memory.

电信号可以沿着大脑中的神经元膜传播,从而实现神经细胞之间的交流。在此过程中,所有细胞膜的基本支架--脂质双分子层会随着这种电活动而变形和重组。这些变化会影响膜的机电特性,进而在物理上储存生物记忆。这种记忆可以存在很短或很长时间。传统上,生物记忆是通过单个神经元之间传输的加强或减弱来定义的。在这里,我们展示了电刺激也可能改变脂膜的特性,从而指向一种新的记忆存储机制。此外,在分析现有电生理学数据的基础上,我们研究了磷脂膜长期电位的分子机制。最后,我们研究了脂膜的记忆电容特性、神经元学习和记忆之间可能存在的关系。
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引用次数: 0
Multispherical shapes of vesicles with intramembrane domains 具有膜内结构域的多球形囊泡。
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2024-01-11 DOI: 10.1140/epje/s10189-023-00399-z
Reinhard Lipowsky

Phase separation of biomembranes into two fluid phases, a and b, leads to the formation of vesicles with intramembrane a- and b-domains. These vesicles can attain multispherical shapes consisting of several spheres connected by closed membrane necks. Here, we study the morphological complexity of these multispheres using the theory of curvature elasticity. Vesicles with two domains form two-sphere shapes, consisting of one a- and one b-sphere, connected by a closed ab-neck. The necks’ effective mean curvature is used to distinguish positive from negative necks. Two-sphere shapes of two-domain vesicles can attain four different morphologies that are governed by two different stability conditions. The closed ab-necks are compressed by constriction forces which induce neck fission and vesicle division for large line tensions and/or large spontaneous curvatures. Multispherical shapes with one ab-neck and additional aa- and bb-necks involve several stability conditions, which act to reduce the stability regimes of the multispheres. Furthermore, vesicles with more than two domains form multispheres with more than one ab-neck. The multispherical shapes described here represent generalized constant-mean-curvature surfaces with up to four constant mean curvatures. These shapes are accessible to experimental studies using available methods for giant vesicles prepared from ternary lipid mixtures.

将生物膜相分离成 a 和 b 两种流体相会形成具有膜内 a 和 b 域的囊泡。这些囊泡可呈多球形,由封闭的膜颈连接的多个球体组成。在此,我们利用曲率弹性理论研究了这些多球的形态复杂性。具有两个领域的囊泡形成双球体形状,由一个 a 球体和一个 b 球体组成,并由一个封闭的 ab 形颈连接。颈部的有效平均曲率用于区分正颈和负颈。双域囊泡的双球形状可以达到四种不同的形态,它们受两种不同稳定性条件的制约。当线张力较大和/或自发曲率较大时,封闭的ab-necks会受到收缩力的压缩,从而导致颈部裂开和囊泡分裂。具有一个ab-颈和额外的aa-和bb-颈的多球体形状涉及多个稳定性条件,这些条件降低了多球体的稳定性。此外,具有两个以上结构域的囊泡会形成具有一个以上ab-颈的多球体。这里描述的多球体形状代表了具有多达四个恒定平均曲率的广义恒定平均曲率表面。使用现有方法对三元脂质混合物制备的巨型囊泡进行实验研究,可以获得这些形状。
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引用次数: 0
A continuum mechanics model of the plant cell wall reveals interplay between enzyme action and cell wall structure 植物细胞壁连续介质力学模型揭示了酶作用与细胞壁结构之间的相互作用。
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2024-01-06 DOI: 10.1140/epje/s10189-023-00396-2
Euan T. Smithers, Jingxi Luo, Rosemary J. Dyson

Plant cell growth is regulated through manipulation of the cell wall network, which consists of oriented cellulose microfibrils embedded within a ground matrix incorporating pectin and hemicellulose components. There remain many unknowns as to how this manipulation occurs. Experiments have shown that cellulose reorients in cell walls as the cell expands, while recent data suggest that growth is controlled by distinct collections of hemicellulose called biomechanical hotspots, which join the cellulose molecule together. The enzymes expansin and Cel12A have both been shown to induce growth of the cell wall; however, while Cel12A’s wall-loosening action leads to a reduction in the cell wall strength, expansin’s has been shown to increase the strength of the cell wall. In contrast, members of the XTH enzyme family hydrolyse hemicellulose but do not appear to cause wall creep. This experimentally observed behaviour still awaits a full explanation. We derive and analyse a mathematical model for the effective mechanical properties of the evolving cell wall network, incorporating cellulose microfibrils, which reorient with cell growth and are linked via biomechanical hotspots made up of regions of crosslinking hemicellulose. Assuming a visco-elastic response for the cell wall and using a continuum approach, we calculate the total stress resultant of the cell wall for a given overall growth rate. By changing appropriate parameters affecting breakage rate and viscous properties, we provide evidence for the biomechanical hotspot hypothesis and develop mechanistic understanding of the growth-inducing enzymes.

细胞壁网络由定向纤维素微纤维组成,嵌入含有果胶和半纤维素成分的基质中。关于这种操纵是如何发生的,还有许多未知数。实验表明,随着细胞的扩张,细胞壁中的纤维素会重新定向,而最近的数据表明,生长是由被称为生物力学热点的半纤维素的独特集合体控制的,这些集合体将纤维素分子连接在一起。研究表明,扩张素和 Cel12A 都能诱导细胞壁的生长;然而,Cel12A 的松壁作用会导致细胞壁强度降低,而扩张素的作用则会增加细胞壁的强度。相反,XTH 酶家族的成员水解半纤维素,但似乎不会导致细胞壁蠕变。这种实验观察到的行为仍有待全面解释。我们推导并分析了一个关于不断演变的细胞壁网络有效机械特性的数学模型,该模型包含纤维素微纤维,它们随着细胞的生长而重新定向,并通过由交联半纤维素区域组成的生物力学热点连接起来。假定细胞壁具有粘弹性响应,并采用连续方法,我们可以计算出在给定的整体生长速率下细胞壁的总应力结果。通过改变影响断裂率和粘度特性的适当参数,我们为生物力学热点假说提供了证据,并加深了对生长诱导酶的机理理解。
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引用次数: 0
Motility and swimming: universal description and generic trajectories 运动和游泳:通用描述和通用轨迹。
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2023-12-26 DOI: 10.1140/epje/s10189-023-00395-3
Alexander Farutin, Suhail M. Rizvi, Wei-Fan Hu, Te-Sheng Lin, Salima Rafai, Chaouqi Misbah

Autonomous locomotion is a ubiquitous phenomenon in biology and in physics of active systems at microscopic scale. This includes prokaryotic, eukaryotic cells (crawling and swimming) and artificial swimmers. An outstanding feature is the ability of these entities to follow complex trajectories, ranging from straight, curved (circular, helical...), to random-like ones. The non-straight nature of these trajectories is often explained as a consequence of the asymmetry of the particle or the medium in which it moves, or due to the presence of bounding walls, etc... Here, we show that for a particle driven by a concentration field of an active species, straight, circular and helical trajectories emerge naturally in the absence of asymmetry of the particle or that of suspending medium. Our proof is based on general considerations, without referring to an explicit form of a model. We show that these three trajectories correspond to self-congruent solutions. Self-congruency means that the states of the system at different moments of time can be made identical by an appropriate combination of rotation and translation of the coordinate space. We show that these solutions are exhibited by spherically symmetric particles as a result of a series of pitchfork bifurcations, leading to spontaneous symmetry breaking in the concentration field driving the particle motility. Self-congruent dynamics in one and two dimensions are analyzed as well. Finally, we present a simple explicit nonlinear exactly solvable model of fully isotropic phoretic particle that shows the transitions from a non-motile state to straight motion to circular motion to helical motion as a series of spontaneous symmetry-breaking bifurcations. Whether a system exhibits or not a given trajectory only depends on the numerical values of parameters entering the model, while asymmetry of swimmer shape, or anisotropy of the suspending medium, or influence of bounding walls are not necessary.

在微观尺度的生物和活动系统物理学中,自主运动是一种无处不在的现象。这包括原核细胞、真核细胞(爬行和游泳)和人工游泳器。这些实体的一个突出特点是能够遵循复杂的轨迹,从直线、曲线(圆形、螺旋形......)到随机轨迹。这些轨迹的非直线性通常被解释为粒子或其运动介质不对称的结果,或由于存在边界壁等原因。在这里,我们证明,对于由活性物种浓度场驱动的粒子,在粒子或悬浮介质不对称的情况下,自然会出现直线、圆形和螺旋形轨迹。我们的证明是基于一般考虑,而不涉及模型的明确形式。我们证明这三种轨迹对应于自洽解。自洽是指通过坐标空间的旋转和平移的适当组合,可以使系统在不同时刻的状态相同。我们的研究表明,球形对称粒子由于一系列叉形分叉而表现出这些解,从而导致驱动粒子运动的浓度场自发地打破对称性。我们还分析了一维和二维的自洽动力学。最后,我们提出了一个简单明确的非线性完全可解的全各向同性蠕动粒子模型,该模型显示了从非运动状态到直线运动到圆周运动再到螺旋运动的转变过程,即一系列自发的对称性破缺分岔。系统是否表现出给定轨迹只取决于进入模型的参数数值,而不需要考虑游动体形状的不对称性、悬浮介质的各向异性或边界壁的影响。
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引用次数: 0
Non-specific cargo–filament interactions slow down motor-driven transport 非特异性的货物-纤维相互作用会减慢马达驱动的运输速度
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2023-12-21 DOI: 10.1140/epje/s10189-023-00394-4
Joelle A. Labastide, David A. Quint, Reilly K. Cullen, Bryan Maelfeyt, Jennifer L. Ross, Ajay Gopinathan

Active, motor-based cargo transport is important for many cellular functions and cellular development. However, the cell interior is complex and crowded and could have many weak, non-specific interactions with the cargo being transported. To understand how cargo-environment interactions will affect single motor cargo transport and multi-motor cargo transport, we use an artificial quantum dot cargo bound with few (~ 1) to many (~ 5–10) motors allowed to move in a dense microtubule network. We find that kinesin-driven quantum dot cargo is slower than single kinesin-1 motors. Excitingly, there is some recovery of the speed when multiple motors are attached to the cargo. To determine the possible mechanisms of both the slow down and recovery of speed, we have developed a computational model that explicitly incorporates multi-motor cargos interacting non-specifically with nearby microtubules, including, and predominantly with the microtubule on which the cargo is being transported. Our model has recovered the experimentally measured average cargo speed distribution for cargo-motor configurations with few and many motors, implying that numerous, weak, non-specific interactions can slow down cargo transport and multiple motors can reduce these interactions thereby increasing velocity.

Graphic abstract

基于马达的主动货物运输对许多细胞功能和细胞发育都很重要。然而,细胞内部复杂而拥挤,可能会与被运输的货物发生许多微弱的非特异性相互作用。为了了解货物与环境之间的相互作用将如何影响单马达货物运输和多马达货物运输,我们使用了一种人工量子点货物,它与少数(约 1 个)至多数(约 5-10 个)马达结合,允许其在密集的微管网络中移动。我们发现,驱动蛋白驱动的量子点货物运输比单驱动蛋白-1 电机慢。令人兴奋的是,当多个马达连接到货物上时,速度会有所恢复。为了确定速度减慢和恢复的可能机制,我们建立了一个计算模型,明确地将多电机货物与附近的微管(包括主要是正在运输货物的微管)发生非特异性相互作用纳入其中。我们的模型恢复了实验测量的货物-电机配置(少电机和多电机)的平均货物速度分布,这意味着大量微弱的非特异性相互作用会减慢货物运输速度,而多电机可以减少这些相互作用,从而提高速度。
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引用次数: 0
Instanton-based importance sampling for extreme fluctuations in a shell model for turbulent energy cascade 基于瞬时重要性采样的湍流能量级联壳模型中的极端波动。
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2023-12-21 DOI: 10.1140/epje/s10189-023-00392-6
Guilherme Tegoni Goedert, Luca Biferale

Many out-of-equilibrium flows present non-Gaussian fluctuations in physically relevant observables, such as energy dissipation rate. This implies extreme fluctuations that, although rarely observed, have a significant phenomenology. Recently, path integral methods for importance sampling have emerged from formalism initially devised for quantum field theory and are being successfully applied to the Burgers equation and other fluid models. We proposed exploring the domain of application of these methods using a shell model, a dynamical system for turbulent energy cascade which can be numerically sampled for extreme events in an efficient manner and presents many interesting properties. We start from a validation of the instanton-based importance sampling methodology in the heat equation limit. We explored the limits of the method as nonlinearity grows stronger, finding good qualitative results for small values of the leading nonlinear coefficient. A worst agreement between numerical simulations of the whole systems and instanton results for estimation of the distribution’s flatness is observed when increasing the nonlinear intensities.

许多非均衡流在物理相关观测值(如能量耗散率)中呈现非高斯波动。这意味着极端波动虽然很少被观测到,但却具有重要的现象学意义。最近,用于重要度采样的路径积分方法从最初为量子场论设计的形式主义中脱颖而出,并成功应用于布尔格斯方程和其他流体模型。我们建议使用贝壳模型探索这些方法的应用领域,贝壳模型是湍流能量级联的动力系统,可以对极端事件进行有效的数值采样,并呈现出许多有趣的特性。我们首先验证了热方程极限下基于瞬子的重要性采样方法。随着非线性的增强,我们探索了该方法的局限性,发现对于主要非线性系数的较小值,该方法具有良好的定性结果。当非线性强度增大时,整个系统的数值模拟结果与瞬时结果在估计分布平整度方面的一致性最差。
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引用次数: 0
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The European Physical Journal E
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