首页 > 最新文献

The European Physical Journal E最新文献

英文 中文
Convective mixing in porous media: a review of Darcy, pore-scale and Hele-Shaw studies 多孔介质中的对流混合:达西、孔隙尺度和赫勒-肖研究综述
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2023-12-16 DOI: 10.1140/epje/s10189-023-00390-8
Marco De Paoli

Convection-driven porous media flows are common in industrial processes and in nature. The multiscale and multiphase character of these systems and the inherent nonlinear flow dynamics make convection in porous media a complex phenomenon. As a result, a combination of different complementary approaches, namely theory, simulations and experiments, have been deployed to elucidate the intricate physics of convection in porous media. In this work, we review recent findings on mixing in fluid-saturated porous media convection. We focus on the dissolution of a heavy fluid layer into a lighter one, and we consider different flow configurations. We present Darcy, pore-scale and Hele-Shaw investigations inspired by geophysical processes. While the results obtained for Darcy flows match the dissolution behaviour predicted theoretically, Hele-Shaw and pore-scale investigations reveal a different and tangled scenario in which finite-size effects play a key role. Finally, we present recent numerical and experimental developments and we highlight possible future research directions. The findings reviewed in this work will be crucial to make reliable predictions about the long-term behaviour of dissolution and mixing in engineering and natural processes, which are required to tackle societal challenges such as climate change mitigation and energy transition.

摘要对流驱动的多孔介质流在工业过程和自然界中都很常见。这些系统的多尺度和多相特性以及固有的非线性流动动力学使多孔介质中的对流成为一种复杂现象。因此,为了阐明多孔介质中对流错综复杂的物理现象,我们采用了不同的互补方法,即理论、模拟和实验。在这项工作中,我们回顾了有关流体饱和多孔介质对流中混合的最新研究成果。我们重点关注重流体层向轻流体层的溶解,并考虑了不同的流动配置。我们介绍了受地球物理过程启发而进行的达西、孔隙尺度和赫勒-肖研究。达西流的结果与理论预测的溶解行为一致,而赫勒肖和孔隙尺度的研究则揭示了一种不同的、纠结的情况,其中有限尺寸效应发挥了关键作用。最后,我们介绍了最近的数值和实验发展,并强调了未来可能的研究方向。本研究综述的发现对于可靠预测工程和自然过程中溶解和混合的长期行为至关重要,而这正是应对气候变化减缓和能源转型等社会挑战所必需的。
{"title":"Convective mixing in porous media: a review of Darcy, pore-scale and Hele-Shaw studies","authors":"Marco De Paoli","doi":"10.1140/epje/s10189-023-00390-8","DOIUrl":"10.1140/epje/s10189-023-00390-8","url":null,"abstract":"<p>Convection-driven porous media flows are common in industrial processes and in nature. The multiscale and multiphase character of these systems and the inherent nonlinear flow dynamics make convection in porous media a complex phenomenon. As a result, a combination of different complementary approaches, namely theory, simulations and experiments, have been deployed to elucidate the intricate physics of convection in porous media. In this work, we review recent findings on mixing in fluid-saturated porous media convection. We focus on the dissolution of a heavy fluid layer into a lighter one, and we consider different flow configurations. We present Darcy, pore-scale and Hele-Shaw investigations inspired by geophysical processes. While the results obtained for Darcy flows match the dissolution behaviour predicted theoretically, Hele-Shaw and pore-scale investigations reveal a different and tangled scenario in which finite-size effects play a key role. Finally, we present recent numerical and experimental developments and we highlight possible future research directions. The findings reviewed in this work will be crucial to make reliable predictions about the long-term behaviour of dissolution and mixing in engineering and natural processes, which are required to tackle societal challenges such as climate change mitigation and energy transition.</p>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"46 12","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1140/epje/s10189-023-00390-8.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138687179","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Lipids with negative spontaneous curvature decrease the solubility of the cancer drug paclitaxel in liposomes 具有负自发曲率的脂质可降低抗癌药物紫杉醇在脂质体中的溶解度
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2023-12-15 DOI: 10.1140/epje/s10189-023-00388-2
Victoria Steffes, Scott MacDonald, John Crowe, Meena Murali, Kai K. Ewert, Youli Li, Cyrus R. Safinya

Paclitaxel (PTX) is a hydrophobic small-molecule cancer drug that loads into the membrane (tail) region of lipid carriers such as liposomes and micelles. The development of improved lipid-based carriers of PTX is an important objective to generate chemotherapeutics with fewer side effects. The lipids 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (DOPE) and glyceryl monooleate (GMO) show propensity for fusion with other lipid membranes, which has led to their use in lipid vectors of nucleic acids. We hypothesized that DOPE and GMO could enhance PTX delivery to cells through a similar membrane fusion mechanism. As an important measure of drug carrier performance, we evaluated PTX solubility in cationic liposomes containing GMO or DOPE. Solubility was determined by time-dependent kinetic phase diagrams generated from direct observations of PTX crystal formation using differential-interference-contrast optical microscopy. Remarkably, PTX was much less soluble in these liposomes than in control cationic liposomes containing univalent cationic lipid 1,2-dioleoyl-3-trimethylammonium-propane (DOTAP) and 1,2-dioleoyl-sn-glycero-3-phosphatidylcholine (DOPC), which are not fusogenic. In particular, PTX was not substantially soluble in GMO-based cationic liposomes. The fusogenicity of DOPE and GMO is related to the negative spontaneous curvature of membranes containing these lipids, which drives formation of nonlamellar self-assembled phases (inverted hexagonal or gyroid cubic). To determine whether PTX solubility is governed by lipid membrane structure or by local intermolecular interactions, we used synchrotron small-angle X-ray scattering. To increase the signal/noise ratio, we used DNA to condense the lipid formulations into lipoplex pellets. The results suggest that local intermolecular interactions are of greater importance and that the negative spontaneous curvature-inducing lipids DOPE and GMO are not suitable components of liposomal carriers for PTX delivery.

Graphical abstract

紫杉醇(PTX)是一种疏水性小分子抗癌药物,可负载于脂质载体(如脂质体和胶束)的膜(尾部)区域。开发改良的 PTX 脂质载体是产生副作用较少的化疗药物的一个重要目标。1,2-二油酰-sn-甘油-3-磷脂乙醇胺(DOPE)和甘油单油酸酯(GMO)这两种脂质具有与其他脂膜融合的倾向,因此被用于核酸的脂质载体。我们推测 DOPE 和 GMO 可通过类似的膜融合机制增强 PTX 向细胞的递送。作为衡量药物载体性能的一个重要指标,我们评估了 PTX 在含有 GMO 或 DOPE 的阳离子脂质体中的溶解度。溶解度是通过使用微分干涉对比光学显微镜直接观察 PTX 晶体形成而生成的随时间变化的动力学相图确定的。值得注意的是,与含有单价阳离子脂质 1,2-二油酰-3-三甲基铵-丙烷(DOTAP)和 1,2-二油酰-sn-甘油-3-磷脂酰胆碱(DOPC)的对照阳离子脂质体相比,PTX 在这些脂质体中的溶解度要低得多,而这些脂质体不产生熔解。特别是,PTX 在基于 GMO 的阳离子脂质体中的溶解度很低。DOPE 和 GMO 的致熔性与含有这些脂质的膜的负自发曲率有关,这种曲率会推动非膜状自组装相(倒六边形或陀螺立方体)的形成。为了确定 PTX 的溶解度是受脂膜结构还是受局部分子间相互作用的影响,我们使用了同步辐射小角 X 射线散射。为了提高信噪比,我们使用 DNA 将脂质配方凝结成脂质颗粒。结果表明,局部分子间的相互作用更为重要,而诱导负自发曲率的脂质 DOPE 和 GMO 并不适合作为输送 PTX 的脂质体载体成分。
{"title":"Lipids with negative spontaneous curvature decrease the solubility of the cancer drug paclitaxel in liposomes","authors":"Victoria Steffes,&nbsp;Scott MacDonald,&nbsp;John Crowe,&nbsp;Meena Murali,&nbsp;Kai K. Ewert,&nbsp;Youli Li,&nbsp;Cyrus R. Safinya","doi":"10.1140/epje/s10189-023-00388-2","DOIUrl":"10.1140/epje/s10189-023-00388-2","url":null,"abstract":"<div><p>Paclitaxel (PTX) is a hydrophobic small-molecule cancer drug that loads into the membrane (tail) region of lipid carriers such as liposomes and micelles. The development of improved lipid-based carriers of PTX is an important objective to generate chemotherapeutics with fewer side effects. The lipids 1,2-dioleoyl-<i>sn</i>-glycero-3-phosphoethanolamine (DOPE) and glyceryl monooleate (GMO) show propensity for fusion with other lipid membranes, which has led to their use in lipid vectors of nucleic acids. We hypothesized that DOPE and GMO could enhance PTX delivery to cells through a similar membrane fusion mechanism. As an important measure of drug carrier performance, we evaluated PTX solubility in cationic liposomes containing GMO or DOPE. Solubility was determined by time-dependent kinetic phase diagrams generated from direct observations of PTX crystal formation using differential-interference-contrast optical microscopy. Remarkably, PTX was much less soluble in these liposomes than in control cationic liposomes containing univalent cationic lipid 1,2-dioleoyl-3-trimethylammonium-propane (DOTAP) and 1,2-dioleoyl-<i>sn</i>-glycero-3-phosphatidylcholine (DOPC), which are not fusogenic. In particular, PTX was not substantially soluble in GMO-based cationic liposomes. The fusogenicity of DOPE and GMO is related to the negative spontaneous curvature of membranes containing these lipids, which drives formation of nonlamellar self-assembled phases (inverted hexagonal or gyroid cubic). To determine whether PTX solubility is governed by lipid membrane structure or by local intermolecular interactions, we used synchrotron small-angle X-ray scattering. To increase the signal/noise ratio, we used DNA to condense the lipid formulations into lipoplex pellets. The results suggest that local intermolecular interactions are of greater importance and that the negative spontaneous curvature-inducing lipids DOPE and GMO are not suitable components of liposomal carriers for PTX delivery.</p><h3>Graphical abstract</h3><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"46 12","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138686843","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Computational approaches to lipid-based nucleic acid delivery systems 基于脂质的核酸递送系统的计算方法
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2023-12-14 DOI: 10.1140/epje/s10189-023-00385-5
Giovanni Settanni

Nucleic acid-based therapies have shown enormous effectiveness as vaccines against the recent COVID19 pandemics and hold great promises in the fight of a broad spectrum of diseases ranging from viral infections to cancer up to genetically transmitted pathologies. Due to their highly degradable polyanionic nature, nucleic acids need to be packed in sophisticate delivery vehicles which compact them up, protect them from early degradation and help delivery them to the right tissue/cells. Lipid-based nanoparticles (LNP) represent, at present, the main solution for nucleic acid delivery. They are made of a mixture of lipids whose key ingredient is an ionizable cationic lipid. Indeed, the interactions between the polyanionic nucleic acids and the ionizable cationic lipids, and their pH-dependent regulation in the life cycle of the nanoparticle, from production to cargo delivery, mostly determine the effectiveness of the therapeutic approach. Notwithstanding the large improvements in the delivery efficiency of LNPs in the last two decades, it is estimated that only a small fraction of the cargo is actually delivered, stimulating further research for the design of more effective LNP formulations. A rationally driven design would profit from the knowledge of the precise molecular structure of these materials, which is however still either missing or characterized by poor spatial resolution. Computational approaches have often been used as a molecular microscope either to enrich the available experimental data and provide a molecular-level picture of the LNPs or even simulate specific processes involving the formation and/or the molecular mechanisms of action of the LNP. Here, I review the recent literature in the field.

基于核酸的疗法作为疫苗在最近的covid - 19大流行中显示出巨大的有效性,并且在对抗从病毒感染到癌症再到遗传传播疾病的广泛疾病方面有着巨大的希望。由于其高度可降解的多阴离子性质,核酸需要包装在复杂的运输工具中,以压缩它们,保护它们免受早期降解,并帮助它们运送到正确的组织/细胞。目前,基于脂质纳米颗粒(LNP)是核酸传递的主要解决方案。它们是由脂质混合物制成的,其关键成分是一种可电离的阳离子脂质。事实上,多阴离子核酸与可电离阳离子脂质之间的相互作用,以及它们在纳米颗粒生命周期(从生产到货物输送)中的ph依赖性调节,在很大程度上决定了治疗方法的有效性。尽管在过去的二十年里LNP的交付效率有了很大的提高,但据估计只有一小部分货物被实际交付,这刺激了对设计更有效的LNP配方的进一步研究。理性驱动的设计将受益于这些材料的精确分子结构的知识,然而,这些知识仍然缺失或以空间分辨率差为特征。计算方法经常被用作分子显微镜,以丰富可用的实验数据并提供LNP的分子水平图像,甚至模拟涉及LNP形成和/或分子作用机制的特定过程。在这里,我回顾了该领域的最新文献。
{"title":"Computational approaches to lipid-based nucleic acid delivery systems","authors":"Giovanni Settanni","doi":"10.1140/epje/s10189-023-00385-5","DOIUrl":"10.1140/epje/s10189-023-00385-5","url":null,"abstract":"<div><p>Nucleic acid-based therapies have shown enormous effectiveness as vaccines against the recent COVID19 pandemics and hold great promises in the fight of a broad spectrum of diseases ranging from viral infections to cancer up to genetically transmitted pathologies. Due to their highly degradable polyanionic nature, nucleic acids need to be packed in sophisticate delivery vehicles which compact them up, protect them from early degradation and help delivery them to the right tissue/cells. Lipid-based nanoparticles (LNP) represent, at present, the main solution for nucleic acid delivery. They are made of a mixture of lipids whose key ingredient is an ionizable cationic lipid. Indeed, the interactions between the polyanionic nucleic acids and the ionizable cationic lipids, and their pH-dependent regulation in the life cycle of the nanoparticle, from production to cargo delivery, mostly determine the effectiveness of the therapeutic approach. Notwithstanding the large improvements in the delivery efficiency of LNPs in the last two decades, it is estimated that only a small fraction of the cargo is actually delivered, stimulating further research for the design of more effective LNP formulations. A rationally driven design would profit from the knowledge of the precise molecular structure of these materials, which is however still either missing or characterized by poor spatial resolution. Computational approaches have often been used as a molecular microscope either to enrich the available experimental data and provide a molecular-level picture of the LNPs or even simulate specific processes involving the formation and/or the molecular mechanisms of action of the LNP. Here, I review the recent literature in the field.</p></div>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"46 12","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-12-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1140/epje/s10189-023-00385-5.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138630010","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mosquito swarms shear harden 蚊群剪切变硬
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2023-12-08 DOI: 10.1140/epje/s10189-023-00379-3
Andy M. Reynolds

Recently Cavagna et al. (Sci Rep 13(1): 8745, 2023) documented the swarming behaviors of laboratory-based Anopheles gambiae mosquitoes. Here key observations from this 3D-video tracking study are reproduced by a minimally structured (maximum entropy) stochastic trajectory model. The modelling shows that in contrast with midge swarms which are a form of collective behavior, unperturbed mosquito swarms are more like collections of individuals that independently circulate around a fixed location. The modelling predicts the observed response Anopheles gambiae mosquitoes in wild swarms to varying wind speeds (Butail et al. in J Med Entomol 50(3): 552–559, 2013). It is shown that this response can be attributed to shear hardening. This is because mosquitoes are found to be attracted to the centre of the swarm by an effective force that increases with increasing flight speed. Mosquitoes can therefore better resist the influence of environmental disturbances by increasing their flight speeds. This contrasts with other emergent mechanical-like properties of swarming which arise accidentally without a change in an individual’s behavior. The new results add to the growing realization that perturbations can drive swarms into more robust states.

最近,Cavagna 等人(Sci Rep 13(1):8745, 2023)记录了实验室冈比亚按蚊的蜂群行为。本文通过一个最小结构(最大熵)随机轨迹模型再现了这项三维视频追踪研究的主要观察结果。模型显示,与蠓群这种集体行为不同,未受干扰的蚊群更像是个体的集合,它们围绕一个固定地点独立活动。该模型预测了在野生蚊群中观察到的冈比亚按蚊对不同风速的反应(Butail et al:552-559, 2013).研究表明,这种反应可归因于剪切硬化。这是因为蚊子被一种有效的力量吸引到蚊群中心,这种力量随着飞行速度的增加而增加。因此,蚊子可以通过提高飞行速度来更好地抵御环境干扰的影响。这与蜂群中其他类似机械的新兴特性形成了鲜明对比,后者是在个体行为没有改变的情况下偶然产生的。人们越来越认识到,扰动可以促使蚊群进入更稳健的状态。
{"title":"Mosquito swarms shear harden","authors":"Andy M. Reynolds","doi":"10.1140/epje/s10189-023-00379-3","DOIUrl":"10.1140/epje/s10189-023-00379-3","url":null,"abstract":"<div><p>Recently Cavagna et al. (Sci Rep 13(1): 8745, 2023) documented the swarming behaviors of laboratory-based <i>Anopheles gambiae</i> mosquitoes. Here key observations from this 3D-video tracking study are reproduced by a minimally structured (maximum entropy) stochastic trajectory model. The modelling shows that in contrast with midge swarms which are a form of collective behavior, unperturbed mosquito swarms are more like collections of individuals that independently circulate around a fixed location. The modelling predicts the observed response <i>Anopheles gambiae</i> mosquitoes in wild swarms to varying wind speeds (Butail et al. in J Med Entomol 50(3): 552–559, 2013). It is shown that this response can be attributed to shear hardening. This is because mosquitoes are found to be attracted to the centre of the swarm by an effective force that increases with increasing flight speed. Mosquitoes can therefore better resist the influence of environmental disturbances by increasing their flight speeds. This contrasts with other emergent mechanical-like properties of swarming which arise accidentally without a change in an individual’s behavior. The new results add to the growing realization that perturbations can drive swarms into more robust states.</p></div>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"46 12","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1140/epje/s10189-023-00379-3.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138553097","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction to: Pincus blob elasticity in an intrinsically disordered protein 更正:一种内在无序蛋白质中的平卡斯圆球弹性
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2023-12-08 DOI: 10.1140/epje/s10189-023-00382-8
Hoang P. Truong, Ian L. Morgan, Gil Koren, Ram Avinery, Roy Beck, Omar A. Saleh
{"title":"Correction to: Pincus blob elasticity in an intrinsically disordered protein","authors":"Hoang P. Truong,&nbsp;Ian L. Morgan,&nbsp;Gil Koren,&nbsp;Ram Avinery,&nbsp;Roy Beck,&nbsp;Omar A. Saleh","doi":"10.1140/epje/s10189-023-00382-8","DOIUrl":"10.1140/epje/s10189-023-00382-8","url":null,"abstract":"","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"46 12","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138558106","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Soret coefficient of human low-density lipoprotein in solution: a thermophilic behavior 人低密度脂蛋白在溶液中的索雷特系数:一种嗜热行为。
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2023-12-07 DOI: 10.1140/epje/s10189-023-00377-5
Luciene Oliveira Machado, Dennys Reis, Antônio Martins Figueiredo Neto

Thermodiffusion, or Soret effect, is the physical phenomenon of matter gradients originated by the migration of chemical species induced by thermal gradients. Thermodiffusion has been widely applied in the study of colloidal suspensions. In this study, we investigate the termodiffusion behavior of low-density lipoprotein (LDL) particles, by the Soret coefficient measurement. It is a new approach to studies of plasma lipoproteins. The experimental work was based on thermal- and Soret-lens effects. These effects were induced by laser irradiation of the samples, at two different time scales, in a Z-scan setup. LDL samples were analyzed under physiological conditions, notedly, ionic strength and pH, and at different temperatures. Temperature dependence of Soret coefficient showed a slight decrease in the absolute value of this coefficient, as a function of temperature increasing. However, its sign does not change at the temperatures investigated (15, 22.5 and 37.5 °C). The results show that LDL particles exhibit thermophilic behavior. The origin of this thermophilic behavior is not yet completely understood. We discuss some aspects that can be related with the Soret effect in LDL samples.

Graphical abstract

热扩散或索雷特效应是由热梯度引起的化学物质迁移所引起的物质梯度的物理现象。热扩散在胶体悬浮液的研究中得到了广泛的应用。在这项研究中,我们研究了低密度脂蛋白(LDL)颗粒的温度扩散行为,通过索雷特系数测量。这是研究血浆脂蛋白的新途径。实验工作是基于热透镜效应和索雷透镜效应。这些效应是由激光照射样品,在两个不同的时间尺度,在z扫描设置。对LDL样品在生理条件下,特别是离子强度和pH值,以及在不同温度下进行分析。Soret系数的温度依赖性随着温度的升高,其绝对值略有下降。然而,它的符号在所研究的温度(15、22.5和37.5°C)下没有变化。结果表明,低密度脂蛋白颗粒表现出嗜热行为。这种嗜热行为的起源尚不完全清楚。我们讨论了与LDL样品中Soret效应相关的一些方面。
{"title":"The Soret coefficient of human low-density lipoprotein in solution: a thermophilic behavior","authors":"Luciene Oliveira Machado,&nbsp;Dennys Reis,&nbsp;Antônio Martins Figueiredo Neto","doi":"10.1140/epje/s10189-023-00377-5","DOIUrl":"10.1140/epje/s10189-023-00377-5","url":null,"abstract":"<div><p>Thermodiffusion, or Soret effect, is the physical phenomenon of matter gradients originated by the migration of chemical species induced by thermal gradients. Thermodiffusion has been widely applied in the study of colloidal suspensions. In this study, we investigate the termodiffusion behavior of low-density lipoprotein (LDL) particles, by the Soret coefficient measurement. It is a new approach to studies of plasma lipoproteins. The experimental work was based on thermal- and Soret-lens effects. These effects were induced by laser irradiation of the samples, at two different time scales, in a Z-scan setup. LDL samples were analyzed under physiological conditions, notedly, ionic strength and pH, and at different temperatures. Temperature dependence of Soret coefficient showed a slight decrease in the absolute value of this coefficient, as a function of temperature increasing. However, its sign does not change at the temperatures investigated (15, 22.5 and 37.5 °C). The results show that LDL particles exhibit thermophilic behavior. The origin of this thermophilic behavior is not yet completely understood. We discuss some aspects that can be related with the Soret effect in LDL samples.</p><h3>Graphical abstract</h3><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"46 12","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-12-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138497467","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Statics and dynamics of point boojums, line and modified Saturn ring topological defects in nematic confined geometry 向列受限几何中点boojums、线和修正土星环拓扑缺陷的静力学和动力学。
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2023-12-07 DOI: 10.1140/epje/s10189-023-00387-3
P. V. Dolganov, N. A. Spiridenko, V. K. Dolganov

In this paper we study the static structure and the dynamics of topological defects associated with isotropic droplets in nematic environment. Investigations were made in confined geometry of optical cells when the droplet size was of the order of or larger than the gap of the cell. We observed the coexistence of point boojums and Saturn ring or modified Saturn ring defects. We found transformation of the Saturn ring defect to two localized broad defects at increasing the droplet size. At droplet coalescence antipodes of point and localized broad defects were born and the dynamics of their annihilation with existing defects was investigated. We found strong difference in the process of annihilation of point and localized broad defects.

Graphical Abstract

Microscope images of isotropic droplets in nematic environment in a planar cell. The director orientation far from the droplets is in horizontal direction. The photographs were taken with crossed vertical and horizontal polarizers (a) and with a single horizontal polarizer (b). The cell thickness is 100 μm. Droplet diameter is less than the cell thickness. 1 and 2 are point boojums, L is the Saturn ring defect

本文研究了向列环境中各向同性液滴拓扑缺陷的静态结构和动力学特性。当液滴大小等于或大于细胞间隙时,在光学细胞的受限几何结构中进行了研究。我们观察到点boojums和土星环或改进的土星环缺陷共存。我们发现随着液滴尺寸的增大,土星环缺陷转变为两个局部的宽缺陷。在液滴聚结时产生了点缺陷和局部宽缺陷的对映体,并研究了它们与现有缺陷湮灭的动力学。我们发现点的湮灭过程与局部宽缺陷的湮灭过程有很大的不同。平面细胞向列环境中各向同性液滴的显微镜图像。远离液滴的方向为水平方向。照片采用垂直和水平交叉偏振片(a)和单个水平偏振片(b)拍摄,电池厚度为100 μm。液滴直径小于细胞厚度。1和2是点boojums, L是土星环缺陷。
{"title":"Statics and dynamics of point boojums, line and modified Saturn ring topological defects in nematic confined geometry","authors":"P. V. Dolganov,&nbsp;N. A. Spiridenko,&nbsp;V. K. Dolganov","doi":"10.1140/epje/s10189-023-00387-3","DOIUrl":"10.1140/epje/s10189-023-00387-3","url":null,"abstract":"<div><p>In this paper we study the static structure and the dynamics of topological defects associated with isotropic droplets in nematic environment. Investigations were made in confined geometry of optical cells when the droplet size was of the order of or larger than the gap of the cell. We observed the coexistence of point boojums and Saturn ring or modified Saturn ring defects. We found transformation of the Saturn ring defect to two localized broad defects at increasing the droplet size. At droplet coalescence antipodes of point and localized broad defects were born and the dynamics of their annihilation with existing defects was investigated. We found strong difference in the process of annihilation of point and localized broad defects.</p><h3>Graphical Abstract</h3><div><figure><div><div><picture><source><img></source></picture></div><div><p>Microscope images of isotropic droplets in nematic environment in a planar cell. The director orientation far from the droplets is in horizontal direction. The photographs were taken with crossed vertical and horizontal polarizers (<b>a</b>) and with a single horizontal polarizer (<b>b</b>). The cell thickness is 100 μm. Droplet diameter is less than the cell thickness. 1 and 2 are point boojums, L is the Saturn ring defect</p></div></div></figure></div></div>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"46 12","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-12-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1140/epje/s10189-023-00387-3.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138497466","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Induced phase transformation in ionizable colloidal nanoparticles 可电离胶体纳米颗粒的诱导相变。
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2023-12-07 DOI: 10.1140/epje/s10189-023-00386-4
Leticia López-Flores, Monica Olvera de la Cruz

Acid–base equilibria directly influence the functionality and behavior of particles in a system. Due to the ionizing effects of acid–base functional groups, particles will undergo charge exchange. The degree of ionization and their intermolecular and electrostatic interactions are controlled by varying the pH and salt concentration of the solution in a system. Although the pH can be tuned in experiments, it is hard to model this effect using simulations or theoretical approaches. This is due to the difficulty in treating charge regulation and capturing the cooperative effects in a colloidal suspension with Coulombic interaction. In this work, we analyze a suspension of ionizable colloidal particles via molecular dynamics (MD) simulations, along with Monte Carlo simulations for charge regulation (MC-CR) and derive a phase diagram of the system as a function of pH. It is observed that as pH increases, particles functionalized with acid groups change their arrangement from face-centered cubic (FCC) packing to a disordered state. We attribute these transitions to an increase in the degree of charge polydispersity arising from an increase in pH. Our work shows that charge regulation leads to amorphous solids in colloids when the mean nanoparticle charge is sufficiently high.

酸碱平衡直接影响系统中粒子的功能和行为。由于酸碱官能团的电离作用,粒子会发生电荷交换。电离程度及其分子间和静电相互作用是通过改变系统中溶液的pH和盐浓度来控制的。虽然pH值可以在实验中调整,但很难用模拟或理论方法来模拟这种效果。这是由于在具有库仑相互作用的胶体悬浮液中难以处理电荷调节和捕获协同效应。在这项工作中,我们通过分子动力学(MD)模拟和电荷调节的蒙特卡罗模拟(MC-CR)分析了可电离胶体颗粒的悬浮液,并得出了系统的相图作为pH的函数。观察到,随着pH的增加,酸基功能化的颗粒将其排列从面心立方(FCC)排列改变为无序状态。我们将这些转变归因于ph值增加引起的电荷多分散度的增加。我们的工作表明,当纳米粒子的平均电荷足够高时,电荷调节导致胶体中的非晶固体。
{"title":"Induced phase transformation in ionizable colloidal nanoparticles","authors":"Leticia López-Flores,&nbsp;Monica Olvera de la Cruz","doi":"10.1140/epje/s10189-023-00386-4","DOIUrl":"10.1140/epje/s10189-023-00386-4","url":null,"abstract":"<p>Acid–base equilibria directly influence the functionality and behavior of particles in a system. Due to the ionizing effects of acid–base functional groups, particles will undergo charge exchange. The degree of ionization and their intermolecular and electrostatic interactions are controlled by varying the pH and salt concentration of the solution in a system. Although the pH can be tuned in experiments, it is hard to model this effect using simulations or theoretical approaches. This is due to the difficulty in treating charge regulation and capturing the cooperative effects in a colloidal suspension with Coulombic interaction. In this work, we analyze a suspension of ionizable colloidal particles via molecular dynamics (MD) simulations, along with Monte Carlo simulations for charge regulation (MC-CR) and derive a phase diagram of the system as a function of pH. It is observed that as pH increases, particles functionalized with acid groups change their arrangement from face-centered cubic (FCC) packing to a disordered state. We attribute these transitions to an increase in the degree of charge polydispersity arising from an increase in pH. Our work shows that charge regulation leads to amorphous solids in colloids when the mean nanoparticle charge is sufficiently high.</p>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"46 12","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-12-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1140/epje/s10189-023-00386-4.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138497464","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Lipid vesicle pools studied by passive X-ray microrheology 被动x射线微流变学研究脂质囊泡池。
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2023-12-07 DOI: 10.1140/epje/s10189-023-00375-7
Titus Czajka, Charlotte Neuhaus, Jette Alfken, Moritz Stammer, Yuriy Chushkin, Diego Pontoni, Christian Hoffmann, Dragomir Milovanovic, Tim Salditt

Vesicle pools can form by attractive interaction in a solution, mediated by proteins or divalent ions such as calcium. The pools, which are alternatively also denoted as vesicle clusters, form by liquid-liquid phase separation (LLPS) from an initially homogeneous solution. Due to the short range liquid-like order of vesicles in the pool or cluster, the vesicle-rich phase can also be regarded as a condensate, and one would like to better understand not only the structure of these systems, but also their dynamics. The diffusion of vesicles, in particular, is expected to change when vesicles are arrested in a pool. Here we investigate whether passive microrheology based on X-ray photon correlation spectroscopy (XPCS) is a suitable tool to study model systems of artificial lipid vesicles exhibiting LLPS, and more generally also other heterogeneous biomolecular fluids. We show that by adding highly scattering tracer particles to the solution, valuable information on the single vesicle as well as collective dynamics can be inferred. While the correlation functions reveal freely diffusing tracer particles in solutions at low CaCl(_{2}) concentrations, the relaxation rate (Gamma (q)) shows a nonlinear dependence on (q^2) at a higher concentration of around 8 mM CaCl(_{2}), characterised by two linear regimes with a broad cross-over. We explain this finding based on arrested diffusion in percolating vesicle clusters.

在溶液中,由蛋白质或二价离子(如钙)介导的吸引相互作用可形成囊泡池。这些池,也被称为囊泡簇,是由液-液相分离(LLPS)从最初的均匀溶液中形成的。由于池或团簇中的囊泡具有短范围的类液体秩序,因此富囊泡相也可以被视为凝聚物,人们不仅希望更好地了解这些系统的结构,而且希望更好地了解它们的动力学。特别是,当囊泡被困在池中时,囊泡的扩散预计会发生变化。在这里,我们研究了基于x射线光子相关光谱(XPCS)的被动微流变学是否适合研究具有LLPS的人工脂质囊泡模型系统,以及更广泛的其他异质生物分子流体。我们表明,通过向溶液中添加高散射示踪粒子,可以推断出有关单个囊泡以及集体动力学的有价值信息。虽然相关函数揭示了低浓度(公式:见文)溶液中自由扩散的示踪粒子,但松弛率(公式:见文)在较高浓度(约8毫米)(公式:见文)下显示出对[公式:见文]的非线性依赖,其特征是具有宽交叉的两个线性体系。我们解释这一发现是基于在渗透囊泡簇中被阻止的扩散。
{"title":"Lipid vesicle pools studied by passive X-ray microrheology","authors":"Titus Czajka,&nbsp;Charlotte Neuhaus,&nbsp;Jette Alfken,&nbsp;Moritz Stammer,&nbsp;Yuriy Chushkin,&nbsp;Diego Pontoni,&nbsp;Christian Hoffmann,&nbsp;Dragomir Milovanovic,&nbsp;Tim Salditt","doi":"10.1140/epje/s10189-023-00375-7","DOIUrl":"10.1140/epje/s10189-023-00375-7","url":null,"abstract":"<p>Vesicle pools can form by attractive interaction in a solution, mediated by proteins or divalent ions such as calcium. The pools, which are alternatively also denoted as vesicle clusters, form by liquid-liquid phase separation (LLPS) from an initially homogeneous solution. Due to the short range liquid-like order of vesicles in the pool or cluster, the vesicle-rich phase can also be regarded as a condensate, and one would like to better understand not only the structure of these systems, but also their dynamics. The diffusion of vesicles, in particular, is expected to change when vesicles are arrested in a pool. Here we investigate whether passive microrheology based on X-ray photon correlation spectroscopy (XPCS) is a suitable tool to study model systems of artificial lipid vesicles exhibiting LLPS, and more generally also other heterogeneous biomolecular fluids. We show that by adding highly scattering tracer particles to the solution, valuable information on the single vesicle as well as collective dynamics can be inferred. While the correlation functions reveal freely diffusing tracer particles in solutions at low CaCl<span>(_{2})</span> concentrations, the relaxation rate <span>(Gamma (q))</span> shows a nonlinear dependence on <span>(q^2)</span> at a higher concentration of around 8 mM CaCl<span>(_{2})</span>, characterised by two linear regimes with a broad cross-over. We explain this finding based on arrested diffusion in percolating vesicle clusters.</p>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"46 12","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-12-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1140/epje/s10189-023-00375-7.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138497465","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Connection number topological aspect for backbone DNA networks 主干 DNA 网络的连接数拓扑方面。
IF 1.8 4区 物理与天体物理 Q3 Chemistry Pub Date : 2023-12-06 DOI: 10.1140/epje/s10189-023-00381-9
Ali Ahmad, Ali N. A. Koam, Ibtisam Masmali, Muhammad Azeem, Haleemah Ghazwani

The present study investigates the complex topological characteristics of DNA networks, with a specific emphasis on the innovative metric known as Connection Number (CN) as a key factor in determining network structure. The Connection Number, represented as CN(v) for a vertex v, measures the count of unique paths that link v to every other vertex in the network. By employing rigorous mathematical modeling and analysis techniques, we are able to reveal the profound implications of CN (complex networks) in characterizing the structural robustness and dynamics of information flow within DNA networks. The study of how the theory of graphs and chemicals interact is known as chemical graph theory. This paper, computing the hyper Zagreb connection index, augmented connection index, inverse sum connection index, harmonic connection index, symmetric division connection index, geometric arithmetic connection index, and atom bond connectivity connection index, of two significant types of backbone DNA and Barycentric subdivision of backbone DNA networks. Direct method computation is used to produce these Connection-based topological descriptors.

本研究调查了 DNA 网络的复杂拓扑特征,特别强调了被称为 "连接数(CN)"的创新指标,它是决定网络结构的关键因素。对于一个顶点 v 来说,连接数用 CN(v) 表示,它衡量的是将 v 与网络中其他每个顶点连接起来的唯一路径的数量。通过采用严格的数学建模和分析技术,我们能够揭示 CN(复杂网络)在表征 DNA 网络结构稳健性和信息流动态方面的深远影响。研究图论和化学物质如何相互作用的理论被称为化学图论。本文计算了两种重要类型骨干 DNA 的超萨格勒布连接指数、增强连接指数、逆和连接指数、谐波连接指数、对称除法连接指数、几何算术连接指数和原子键连接指数,以及骨干 DNA 网络的巴里中心细分。这些基于连接的拓扑描述符是通过直接方法计算得出的。
{"title":"Connection number topological aspect for backbone DNA networks","authors":"Ali Ahmad,&nbsp;Ali N. A. Koam,&nbsp;Ibtisam Masmali,&nbsp;Muhammad Azeem,&nbsp;Haleemah Ghazwani","doi":"10.1140/epje/s10189-023-00381-9","DOIUrl":"10.1140/epje/s10189-023-00381-9","url":null,"abstract":"<p>The present study investigates the complex topological characteristics of DNA networks, with a specific emphasis on the innovative metric known as Connection Number (CN) as a key factor in determining network structure. The Connection Number, represented as <i>CN</i>(<i>v</i>) for a vertex <i>v</i>, measures the count of unique paths that link <i>v</i> to every other vertex in the network. By employing rigorous mathematical modeling and analysis techniques, we are able to reveal the profound implications of CN (complex networks) in characterizing the structural robustness and dynamics of information flow within DNA networks. The study of how the theory of graphs and chemicals interact is known as chemical graph theory. This paper, computing the hyper Zagreb connection index, augmented connection index, inverse sum connection index, harmonic connection index, symmetric division connection index, geometric arithmetic connection index, and atom bond connectivity connection index, of two significant types of backbone DNA and Barycentric subdivision of backbone DNA networks. Direct method computation is used to produce these Connection-based topological descriptors.</p>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"46 12","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1140/epje/s10189-023-00381-9.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138486369","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
The European Physical Journal E
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1