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A reverse transcription loop-mediated isothermal amplification assay for the detection of citrus exocortis viroid in Australian citrus 逆转录环介导的等温扩增法检测澳大利亚柑桔外泌体类病毒
IF 1.4 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2023-02-07 DOI: 10.1007/s13313-023-00903-1
Grant A Chambers, Andrew DW Geering, Paul Holford, Monica A Kehoe, Georgios Vidalakis, Nerida J Donovan

Citrus exocortis viroid (CEVd), the causal agent of exocortis, is a pathogen that is thought to infect all citrus varieties, although it is asymptomatic in most. Symptoms of exocortis develop on susceptible rootstocks, resulting in stunting and yield reduction. To aid the detection and management of CEVd, a rapid near-field assay was developed using reverse transcription loop-mediated isothermal amplification (RT-LAMP) for the detection of the viroids in nursery and field trees. Over 240 CEVd sequences, including sequence variants from representative Australian isolates that induce mild and severe symptoms, were used in the design of the primers. The RT-LAMP successfully detected CEVd in a 1:1000 dilution (236 pg) of plant total RNA indicating high sensitivity, and also detected the viroid in rapid, crude plant extractions. The assay was highly specific to CEVd, given there was no cross-reactivity with other citrus-infecting pathogens. This new assay provides a simple, robust, specific, and sensitive method to detect CEVd in Australian citrus and to our knowledge, is the first RT-LAMP assay to detect any citrus-infecting viroid.

柑橘外泌体类病毒(CEVd)是外泌体的病原体,被认为会感染所有柑橘品种,尽管大多数品种都没有症状。易感砧木出现外泌体症状,导致发育迟缓和产量下降。为了帮助检测和管理CEVd,使用逆转录环介导的等温扩增(RT-LAMP)开发了一种快速近场分析法,用于检测苗圃和田间树木中的类病毒。在引物的设计中使用了240多个CEVd序列,包括来自引起轻度和重度症状的代表性澳大利亚分离株的序列变体。RT-LAMP在植物总RNA的1:1000稀释液(236pg)中成功检测到CEVd,表明其具有高灵敏度,并在快速粗植物提取物中检测到类病毒。鉴于与其他柑橘感染病原体没有交叉反应,该检测对CEVd具有高度特异性。这种新的检测方法为检测澳大利亚柑橘中的CEVd提供了一种简单、稳健、特异和灵敏的方法,据我们所知,这是第一种检测任何柑橘感染类病毒的RT-LAMP检测方法。
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引用次数: 1
First detection of Cryptosporiopsis tarraconensis on hazelnut in Türkiye and control potency of some antifungal agents 土耳其榛子上首次检测到焦油隐孢子虫病及一些抗真菌药物的控制效力
IF 1.4 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2023-01-26 DOI: 10.1007/s13313-023-00906-y
Nedim Altin, Baris Gulcu

Hazelnut (Corylus avellana L.) is one of the most important agricultural products of Türkiye with over 77% of total global production occurring here. Some diseases such as powdery mildew, nectria canker and bacterial blight negatively affect hazelnut production. Changing climatic conditions have enhanced the emergence of new diseases in hazelnut orchards. This study was carried out to determine the causative pathogen of some disease symptoms seen in hazelnut orchards in 2021 and to investigate possible control methods. The isolated pathogen – Cryptosporiopsis tarraconensis – was identified by morphological and molecular methods. The effects of different doses of some fungicides on mycelial growth of C. tarraconensis were tested in plates in in vitro experiments as well as on detached leaves. According to the result, the EC50 values of fluxapyroxad + difenoconazole, boscalid + pyraclostrobin and pyrimethanyl + fluopyram fungicides were 0.003, 18.149 and 56.503 µg/mL, respectively. In the detached leaf experiment, the fungicide containing boscalid + pyraclostrobin active substances had the best effect at all doses.

榛子(Corylus avellana L.)是土耳其最重要的农产品之一,占全球总产量的77%以上。一些疾病如白粉菌、油桃溃疡病和白叶枯病会对榛子的生产产生负面影响。气候条件的变化加剧了榛子园新疾病的出现。本研究旨在确定2021年榛子园出现的一些疾病症状的病原体,并探讨可能的控制方法。通过形态学和分子方法鉴定了分离的病原体——柏油隐孢子虫。用平板法和离体叶片法研究了不同剂量杀菌剂对龙须菜菌丝生长的影响。根据结果,fluxapyroxad的EC50值 + 苯醚甲环唑 + 吡唑菌胺和嘧啶甲酰 + 氟吡喃杀菌剂的浓度分别为0.003、18.149和56.503µg/mL。在离体叶片实验中,含有波斯卡利德的杀菌剂 + 吡喃clostrobin活性物质在所有剂量下的效果最好。
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引用次数: 1
Dose-response of pests to ethanedinitrile dose-response of weed seeds, soil borne pathogens, and plant-parasitic nematodes to ethanedinitrile 害虫对乙二腈的剂量反应杂草种子、土传病原体和植物寄生线虫对乙二脒的剂量反应
IF 1.4 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2023-01-25 DOI: 10.1007/s13313-023-00905-z
Swaminathan Thalavaiasundaram, Husein Ajwa, Mary C. Stevens

Ethanedinitrile is a chemical soil fumigant with promising efficacy against several key pests including weeds, nematodes, and soil-borne pathogens. The efficacy of 12 concentrations of ethanedinitrile, ranging from 8.7 to 1,751 mg kg− 1 soil, to control seeds and tubers of five weed species (Cyperus esculentus, C. rotundus, Malva parviflora, Portulaca oleracea, and Stellaria media), two nematode species (Globodera rostochiennsis and Tylenchulus semipenetrans), and four pathogenic fungal species (Fusarium oxysporum, Macrophomina phaseolina, Pythium ultimum, and Verticillium dahlia) were evaluated in acidic sand (pH: 5.6) and alkaline sandy loam (pH: 7.5–7.6), under controlled laboratory conditions. These pathogens and weeds are common in strawberry and vegetable fields and have been targeted by soil fumigants. Ethanedinitrile was injected into microcosms for 24 h. Lower doses of ethanedinitrile controlled fungal pathogens and nematodes better in acidic sand than in alkaline sandy loam. However, the reverse tended to be true for weed control as higher doses of ethanedinitrile in the acidic sand were required to control weeds than in the alkaline sandy loam. Results showed that ethanedinitrile can provide excellent control of soil-borne nematodes, pathogenic fungi, and key weed species in acidic sand and alkaline sandy loam.

乙二腈是一种化学土壤熏蒸剂,对杂草、线虫和土传病原体等几种主要害虫有很好的防治效果。12种浓度的乙二腈的药效范围为8.7至1751 mg kg− 1土壤,以控制五种杂草(香蒲、圆周菊、小花Malva、马齿苋和Stellaria media)的种子和块茎,两种线虫(Globodera rostochennsis和Tylenchulus semi-penetrans),在受控的实验室条件下,在酸性沙(pH:5.6)和碱性沙壤土(pH:7.5–7.6)中评估了四种致病真菌(尖孢镰刀菌、尖孢巨藻、腐霉和大丽花黄萎菌)。这些病原体和杂草在草莓和菜地里很常见,已经成为土壤熏蒸剂的目标。将乙二腈注射到微宇宙中24小时。较低剂量的乙二腈在酸性沙中比在碱性沙壤土中更好地控制真菌病原体和线虫。然而,杂草控制的情况往往相反,因为酸性沙中需要比碱性沙壤土中更高剂量的乙二腈来控制杂草。结果表明,乙二腈对酸性沙壤土和碱性沙壤土中的土传线虫、病原真菌和主要杂草具有良好的防治效果。
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引用次数: 2
Correction to: Soil amendments and suppression of Phytophthora root rot in avocado (persea americana) 更正:土壤改良和抑制鳄梨疫霉菌根腐病
IF 1.4 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2023-01-14 DOI: 10.1007/s13313-023-00904-0
Qurrat Ul Ain Farooq, Jen McComb, Giles E. St. J. Hardy, Treena Burgess
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引用次数: 0
Association of Golovinomyces ambrosiae and Podosphaera xanthii in causing powdery mildew disease of Guizotia abyssinica L.f. Cass in India 黄纹格洛温菌和黄纹波德菌在印度深裂猪瘟中的联合作用
IF 1.4 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2023-01-03 DOI: 10.1007/s13313-022-00901-9
M. Sujatha, G. Suresh, T. B. Helan, H. D. Pushpa

Powdery mildew is one of the most important diseases in niger (Guizotia abyssinica) in India and Ethiopia. Fungi causing the powdery mildew on niger have previously been reported as Golovinomyces cichoracearum and Sphaerotheca sp., but the involved causative agents have not yet been studied in detail. In the present investigation, powdery mildew infections observed on niger in Hyderabad, India, were analyzed by using morphological and multilocus gene sequence analyses. Results based on anamorph characteristics, amplification products obtained with eleven pairs of primers, including powdery mildew-specific primers, combined sequence analyses of internal transcribed spacer (ITS), 28S rDNA and intergenic spacer (IGS) regions, and sequence variations unequivocally indicated mixed infections caused by Golovinomyces ambrosiae and Podosphaera xanthii. Variation in reaction to powdery mildew was observed, and infections were higher in the Ethiopian accessions compared to the Indian varieties. This constitutes the first report of morphological and molecular analyses that confirm mixed powdery mildew infection of niger caused by G. ambrosiae and P. xanthii, two species with wide host ranges.

白粉菌是印度和埃塞俄比亚黑曲霉最重要的病害之一。引起黑曲霉白粉菌的真菌以前被报道为环孢歌洛温酵母和鞘氨醇菌,但所涉及的病原体尚未详细研究。在本研究中,通过形态学和多点基因序列分析,对印度海得拉巴黑色素上观察到的白粉菌感染进行了分析。结果基于变形特征,用11对引物获得的扩增产物,包括白粉病特异性引物,内部转录间隔区(ITS)、28S rDNA和基因间间隔区(IGS)区域的组合序列分析,以及序列变异,明确地表明了由蓝纹格洛温菌和黄球藻引起的混合感染。观察到对白粉病反应的变化,与印度品种相比,埃塞俄比亚品种的感染率更高。这构成了形态学和分子分析的第一份报告,证实了由黄曲霉和黄曲霉这两个寄主范围广的物种引起的黑色素混合性白粉菌感染。
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引用次数: 0
Mango germplasm screening for the identification of sources of tolerance to anthracnose 芒果种质资源筛选及炭疽病抗性来源鉴定
IF 1.4 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2022-12-23 DOI: 10.1007/s13313-022-00899-0
Kathy Rosemary Ellen Grice, Ian Stephen Edward Bally, Carole Louise Wright, Cheryldene Maddox, Asjad Ali, Natalie Louise Dillon

Colletotrichum species are one of the most common causes of postharvest fruit rot in mango in Australia, particularly in the tropical region of north Queensland, and can result in significant losses if not managed. The research aims were to identify sources of anthracnose tolerance and to determine if host material other than fruit could improve or fast track the screening process and result in improved breeding efficiency. Access to the Australian National Mango Genebank (ANMG) collection enabled fruit screening of more than 100 Mangifera indica cultivars or Mangifera species for tolerance to anthracnose by artificial inoculation with Colletotrichum asianum over a period of 14 years. Mean lesion diameters were compared with those on a known susceptible M. indica cultivar Kensington Pride (KP) and a tolerant M. laurina cultivar Lombok. Inoculation of leaf discs and entire leaves was evaluated in the laboratory and the field as alternative assays for tolerance to anthracnose and was assessed by presence/absence of disease. Screening of fruit has shown that anthracnose tolerance within the mango germplasm is highly variable and needs to be assessed over multiple years. None of the alternative laboratory bioassays provided consistent or reliable data. The in-field artificial inoculation of immature leaf flush was successful but was not deemed suitable for adoption due to practical restraints. While resistance to anthracnose in fruit has not yet been identified, some cultivars and Mangifera spp. showed promise for inclusion as parents in future breeding programs.

炭疽菌是澳大利亚芒果采后腐烂的最常见原因之一,尤其是在昆士兰北部的热带地区,如果不加以管理,可能会造成重大损失。这项研究的目的是确定炭疽病耐受性的来源,并确定除水果外的宿主材料是否可以改善或加快筛选过程,从而提高育种效率。利用澳大利亚国家芒果基因库(ANMG)的收集,通过人工接种亚洲炭疽杆菌,在14年内筛选出100多个芒果品种或芒果品种对炭疽病的耐受性。将平均病变直径与已知的易感M.indica品种Kensington Pride(KP)和耐受M.laurina品种Lombok的病变直径进行比较。在实验室和田间对叶盘和整片叶片的接种进行评估,作为炭疽病耐受性的替代试验,并通过是否存在疾病进行评估。果实筛选表明,芒果种质资源对炭疽病的耐受性变化很大,需要多年进行评估。没有一种替代实验室生物测定提供一致或可靠的数据。幼叶冲洗的田间人工接种是成功的,但由于实际限制,不适合采用。虽然果实对炭疽病的抗性尚未确定,但一些品种和芒果属有望作为亲本纳入未来的育种计划。
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引用次数: 2
First report of Calonectria pseudoreteaudii in Lao PDR associated with a leaf spot disease of Macadamia integrifolia 老挝首次报告假reteaudiCalonectria与澳洲坚果叶斑病相关
IF 1.4 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2022-12-22 DOI: 10.1007/s13313-022-00900-w
S. Phanthavong, A. Daly, B. Weir, D. Lee, D. Park, V. Balmas, L. Burgess

Macadamia (Proteaceae) is a rainforest genus indigenous to Queensland and northern New South Wales, Australia. It includes four species, two of which, and their hybrids, are grown commercially for their high-value nuts in Australia and other countries. Macadamia is now being grown in several orchards and in gardens on the Bolaven plateau in southern Lao People’s Democratic Republic (PDR). In November 2018, leaf spot disease symptoms were observed on young leaves of macadamia trees in a demonstration garden 15 km west of Paksong, on the Bolaven Plateau in Champasak Province, Lao PDR. A fungus isolated from the leaf spots was identified by morphological and DNA sequence comparisons as Calonectria pseudoreteaudii. This is the first report of this species in the Lao PDR.

澳洲坚果属(蛋白质科)是澳大利亚昆士兰和新南威尔士州北部的一个热带雨林属。它包括四个物种,其中两个及其杂交种在澳大利亚和其他国家进行商业种植,以获得高价值的坚果。澳大利亚坚果现在种植在老挝人民民主共和国南部博拉文高原的几个果园和花园里。2018年11月,在老挝占巴塞省博拉文高原Paksong以西15公里的示范花园中,在澳洲坚果树的幼叶上观察到叶斑病症状。从叶斑中分离出的一种真菌通过形态学和DNA序列比较鉴定为假reteaudiCalonectria。这是该物种在老挝的首次报告。
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引用次数: 1
Leaf spot caused by Neopestalotiopsis species on Arecaceae in Brazil 巴西槟榔科新香蒜属植物引起的叶斑病
IF 1.4 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2022-12-10 DOI: 10.1007/s13313-022-00893-6
Débora Cervieri Guterres, Mariana Aparecida Silva, Mateus Durso Martins, Daiana Maria Queiroz Azevedo, Daniela Oliveira Lisboa, Danilo Batista Pinho, Gleiber Quintão Furtado

Pestalotioid fungi associated with leaf spot disease of several species of palms (Arecaceae) were investigated in nurseries located in the state of Minas Gerais, Brazil. Symptomatic seedlings of Caryota mitis, Cocos nucifera, Dypsis lutescens, Dypsis madagascariensis, Euterpe edulis, Licuala grandis, Phoenix roebelenii, Ptychosperma elegans, and Wodyetia bifurcata were examined and fungal isolates were identified molecularly using the internal transcribed spacer (ITS), partial β-tubulin (TUB) and partial translation elongation factor 1-α (TEF). Based on concordant phylogenetic and morphological results, as well as ecological specificities, one previously described species, as well as one new species, were recognized from the collection. These findings contribute to the knowledge of the diversity of Neopestalotiopsis in Brazil and may be helpful for further studies on quarantine programs and management measures.

在巴西米纳斯吉拉斯州的苗圃中,对与几种棕榈(槟榔科)叶斑病相关的类害虫真菌进行了调查。利用内部转录间隔区(ITS)、部分β-微管蛋白(TUB)和部分翻译延伸因子1-α(TEF。根据一致的系统发育和形态学结果,以及生态特异性,从该集合中识别出一个先前描述的物种和一个新物种。这些发现有助于了解巴西新香蒜菌的多样性,并可能有助于进一步研究检疫计划和管理措施。
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引用次数: 1
Soil amendments and suppression of Phytophthora root rot in avocado (Persea americana) 土壤改良及对鳄梨疫霉菌根腐病的抑制
IF 1.4 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2022-12-10 DOI: 10.1007/s13313-022-00889-2
Qurrat Ul Ain Farooq, Jen McComb, Giles E. St. J. Hardy, Treena Burgess

The ability of organic, microbial or mineral-based soil additives to suppress root rot caused by Phytophthora cinnamomi was compared with disease reduction resulting from the use of the fungicides phosphite or metalaxyl. The effect of glyphosate (commonly used for weed control) on plant health was also examined. Avocado plants were grown in a glasshouse in pots with soils collected under mature commercial avocado trees. To simulate ‘orchard soil’ conditions, chicken manure, wood mulch, and mulch from beneath 20-year-old trees in an avocado orchard were added to the pots. The effect of P. cinnamomi on plant growth and visible root damage was assessed using plants grown under these ‘orchard’ soil conditions, and treatments with further additives (two microbial soil conditioners, one organic and two mineral-based mulches). In two of three experiments, infestation of soil with P. cinnamomi resulted in no significant reduction on fine root dry weight for plants sprayed with phosphite, or treated with a silicate-based mulch. However, when a combination of these two treatments gave no additive effect. In one experiment, a microbial-based conditioner was also beneficial. Phosphite was preferable to metalaxyl as a chemical treatment, as the latter reduced shoot dry weight by 25% and fine root dry weight by 30% of that in non-inoculated plants. Glyphosate treatment of wheat seedlings growing in the pots with the avocados also reduced shoot dry weight (20%) and fine root dry weight (20%) of non-inoculated avocados. These observations need to be confirmed under field conditions.

将有机、微生物或矿物基土壤添加剂抑制由肉桂疫霉菌引起的根腐病的能力与使用杀菌剂亚磷酸酯或甲霜灵引起的病害减少进行了比较。草甘膦(常用于杂草控制)对植物健康的影响也得到了检验。鳄梨植物生长在温室里的花盆里,土壤收集在成熟的商业鳄梨树下。为了模拟“果园土壤”条件,在花盆中添加了鸡粪、木材覆盖物和鳄梨园20年树龄树下的覆盖物。使用在这些“果园”土壤条件下生长的植物,并用进一步的添加剂(两种微生物土壤调节剂、一种有机和两种矿物覆盖物)处理,评估了肉桂对植物生长和可见根系损伤的影响。在三个实验中的两个实验中,对喷洒亚磷酸盐或用硅酸盐基覆盖物处理的植物来说,肉桂霉对土壤的侵扰并没有显著降低细根干重。然而,当这两种处理的组合没有产生相加效应时。在一个实验中,基于微生物的调节剂也是有益的。亚磷酸盐比甲霜灵更适合作为化学处理,因为后者使未接种植物的地上部干重和细根干重分别减少了25%和30%。草甘膦处理在有鳄梨的花盆中生长的小麦幼苗也降低了未接种鳄梨的茎干重(20%)和细根干重(20%)。这些观测结果需要在现场条件下进行确认。
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引用次数: 2
Extreme resilience of avocado sunblotch viroid RNA in sampled avocado leaves and fruit 鳄梨叶片和果实样本中鳄梨类太阳花病毒RNA的极端弹性
IF 1.4 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2022-12-06 DOI: 10.1007/s13313-022-00898-1
Lara-Simone Pretorius, Andrew D. W. Geering

The main purpose of the Avocado Nursery Voluntary Accreditation Scheme (ANVAS) in Australia is to prevent the spread of pathogens such as avocado sunblotch viroid (ASBVd) in planting material by implementing rigorous testing regimes for these pathogens during the propagation stages. There can sometimes be significant delays in delivery of a plant sample to the pathology laboratory for testing and the storage conditions may be suboptimal during transport. To address these concerns, experiments have been done to investigate how time and storage temperature affect the ability to detect ASBVd in leaf or fruit tissues. Most importantly, ASBVd was shown to be remarkably resilient and easily detected in detached avocado leaves, even when stored at room temperature for 4 weeks, during which time the leaves had become desiccated and necrotic.

澳大利亚鳄梨苗圃自愿认证计划(ANVAS)的主要目的是通过在繁殖阶段对这些病原体实施严格的测试制度,防止鳄梨类太阳花病毒(ASBVd)等病原体在种植材料中传播。有时,将植物样本运送到病理学实验室进行测试可能会出现重大延误,并且在运输过程中,储存条件可能不理想。为了解决这些问题,已经进行了实验来研究时间和储存温度如何影响检测叶片或果实组织中ASBVd的能力。最重要的是,ASBVd被证明具有显著的弹性,并且在分离的鳄梨叶片中很容易检测到,即使在室温下储存4周,在这段时间里,叶片已经变得干燥和坏死。
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引用次数: 1
期刊
Australasian Plant Pathology
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