首页 > 最新文献

Biochimica et biophysica acta. General subjects最新文献

英文 中文
Untargeted metabolomics and proteomics reveal the versatile effects of myeloperoxidase-oxidized LDL on endothelial cells 非靶向代谢组学和蛋白质组学揭示了髓过氧化物酶氧化LDL对内皮细胞的多种作用。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-10-07 DOI: 10.1016/j.bbagen.2025.130865
Cecilia Tangeten , Axelle Bourez , Alexandre Rousseau , Virginie Imbault , Jianru Stahl-Zeng , Florence Souard , Xavier Bisteau , Cedric Delporte , Karim Zouaoui Boudjeltia , Pierre Van Antwerpen

Background

Myeloperoxidase-oxidized LDLs (Mox-LDLs) trigger endothelial cells and contribute to the development of atherosclerosis. However, the mechanisms underlying Mox-LDL-induced stimulation remain elusive. In this study, we applied untargeted metabolomics and proteomics approaches to investigate human umbilical vein endothelial cells (HUVECs) following exposure to Mox-LDLs.

Methods

HUVECs were exposed for 24 h to Mox-LDLs (0 or 100 μg/ml) with or without native LDLs (0 or 1 mg/ml). Supernatants and cell lysates were analyzed by liquid chromatography coupled to mass spectrometry. Using Workflow4Metabolomics work environment, MZmine, SIRIUS and MetGem, we selected and identified key metabolites influenced by Mox-LDL treatment. For the proteomics analysis, we used DIA-NN and the FragPipe-Analyst application to detect proteins differentially expressed after Mox-LDL treatment.

Results

Metabolomics analysis revealed increased levels of sphingolipids, phospholipids and oxidized-cholesterol derived compounds in HUVECs following Mox-LDL exposure. We also detected an increase in small peptides, likely reflecting Mox-LDLs catabolism. Mox-LDL treatment of HUVECs also altered the expression of proteins involved in hemostasis, cell adhesion, angiogenesis, inflammation and stress responses. In addition, proteins from the mitochondrial respiratory chain were upregulated after Mox-LDL treatment. Finally, a trihydroxy-unsaturated fatty acid was secreted by HUVECs exposed to Mox-LDLs and could serve as a biomarker of Mox-LDL exposure.

Conclusions

Our findings suggest that Mox-LDLs are internalized and degraded by HUVECs. They seem to induce increased mitochondrial activity and oxidative stress, likely mediated by reactive oxygen species. We believe that HUVECs activate cytoprotective antioxidant coping mechanisms (glutathione synthesis, heme oxygenase-1…) to survive. Mox-LDLs may also modulate hemostasis and inflammatory responses.
背景:髓过氧化物酶氧化ldl (mox - ldl)触发内皮细胞并促进动脉粥样硬化的发展。然而,mox - ldl诱导刺激的机制仍然难以捉摸。在这项研究中,我们应用非靶向代谢组学和蛋白质组学方法来研究暴露于mox - ldl后的人脐静脉内皮细胞(HUVECs)。方法:将HUVECs暴露于含或不含天然ldl(0或1 mg/ml)的mox - ldl(0或100 μg/ml)中24 h。上清液和细胞裂解液采用液相色谱-质谱联用分析。利用Workflow4Metabolomics工作环境、MZmine、SIRIUS和MetGem,我们选择并鉴定了受Mox-LDL处理影响的关键代谢物。对于蛋白质组学分析,我们使用DIA-NN和FragPipe-Analyst应用程序来检测Mox-LDL处理后差异表达的蛋白质。结果:代谢组学分析显示,暴露于Mox-LDL后,HUVECs中鞘脂、磷脂和氧化胆固醇衍生化合物水平升高。我们还检测到小肽的增加,可能反映了mox - ldl的分解代谢。Mox-LDL处理HUVECs还改变了参与止血、细胞粘附、血管生成、炎症和应激反应的蛋白质的表达。此外,在Mox-LDL处理后,线粒体呼吸链蛋白上调。最后,暴露于Mox-LDL的huvec分泌一种三羟基不饱和脂肪酸,可以作为Mox-LDL暴露的生物标志物。结论:我们的研究结果表明,mox - ldl被HUVECs内化和降解。它们似乎诱导线粒体活性增加和氧化应激,可能是由活性氧介导的。我们认为HUVECs激活细胞保护性抗氧化应对机制(谷胱甘肽合成,血红素加氧酶-1…)来生存。mox - ldl也可能调节止血和炎症反应。
{"title":"Untargeted metabolomics and proteomics reveal the versatile effects of myeloperoxidase-oxidized LDL on endothelial cells","authors":"Cecilia Tangeten ,&nbsp;Axelle Bourez ,&nbsp;Alexandre Rousseau ,&nbsp;Virginie Imbault ,&nbsp;Jianru Stahl-Zeng ,&nbsp;Florence Souard ,&nbsp;Xavier Bisteau ,&nbsp;Cedric Delporte ,&nbsp;Karim Zouaoui Boudjeltia ,&nbsp;Pierre Van Antwerpen","doi":"10.1016/j.bbagen.2025.130865","DOIUrl":"10.1016/j.bbagen.2025.130865","url":null,"abstract":"<div><h3>Background</h3><div>Myeloperoxidase-oxidized LDLs (Mox-LDLs) trigger endothelial cells and contribute to the development of atherosclerosis. However, the mechanisms underlying Mox-LDL-induced stimulation remain elusive. In this study, we applied untargeted metabolomics and proteomics approaches to investigate human umbilical vein endothelial cells (HUVECs) following exposure to Mox-LDLs.</div></div><div><h3>Methods</h3><div>HUVECs were exposed for 24 h to Mox-LDLs (0 or 100 μg/ml) with or without native LDLs (0 or 1 mg/ml). Supernatants and cell lysates were analyzed by liquid chromatography coupled to mass spectrometry. Using Workflow4Metabolomics work environment, MZmine, SIRIUS and MetGem, we selected and identified key metabolites influenced by Mox-LDL treatment. For the proteomics analysis, we used DIA-NN and the FragPipe-Analyst application to detect proteins differentially expressed after Mox-LDL treatment.</div></div><div><h3>Results</h3><div>Metabolomics analysis revealed increased levels of sphingolipids, phospholipids and oxidized-cholesterol derived compounds in HUVECs following Mox-LDL exposure. We also detected an increase in small peptides, likely reflecting Mox-LDLs catabolism. Mox-LDL treatment of HUVECs also altered the expression of proteins involved in hemostasis, cell adhesion, angiogenesis, inflammation and stress responses. In addition, proteins from the mitochondrial respiratory chain were upregulated after Mox-LDL treatment. Finally, a trihydroxy-unsaturated fatty acid was secreted by HUVECs exposed to Mox-LDLs and could serve as a biomarker of Mox-LDL exposure.</div></div><div><h3>Conclusions</h3><div>Our findings suggest that Mox-LDLs are internalized and degraded by HUVECs. They seem to induce increased mitochondrial activity and oxidative stress, likely mediated by reactive oxygen species. We believe that HUVECs activate cytoprotective antioxidant coping mechanisms (glutathione synthesis, heme oxygenase-1…) to survive. Mox-LDLs may also modulate hemostasis and inflammatory responses.</div></div>","PeriodicalId":8800,"journal":{"name":"Biochimica et biophysica acta. General subjects","volume":"1869 12","pages":"Article 130865"},"PeriodicalIF":2.2,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145249494","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Calcium oxalate alters lipid profiles and annexin A2 enrichment in membrane fractions of murine inner medullary collecting duct cells 草酸钙改变小鼠髓内集管细胞膜组分的脂质谱和膜联蛋白A2的富集。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-10-11 DOI: 10.1016/j.bbagen.2025.130868
Zenab Shahzad , Ramish Rafay , Saeed Khan , Amir Kazory , Nancy D. Denslow , Abdel A. Alli
The mechanism underlying calcium oxalate (CaOx) stone formation remains unclear, although recurrent kidney stone formation has been linked to injury of kidney tubular cells in response to their exposure to higher oxalate and CaOx crystals. We hypothesized that CaOx induces the externalization and membrane enrichment of the negatively charged phospholipid phosphatidylserine (PS), while simultaneously enhancing the expression of calcium-binding proteins as a protective mechanism against cell death in inner medullary collecting duct (IMCD) cells. Annexin A2, a calcium-dependent phospholipid-binding protein, may play a protective role in CaOx stone formation. Mouse IMCD (mIMCD3) cells were treated with CaOx before performing a targeted lipidomic analysis of membrane fractions. Additionally, mIMCD3 cells were challenged with methyl-beta-cyclodextrin (MBCD) PS liposomes, Annexin A2 was evaluated by Western blotting and densitometric analysis. Lipidomic analysis revealed an enrichment of multiple PS lipid species in membrane fractions of mIMCD3 cells treated with CaOx. Western blotting and densitometric analysis further demonstrated a significant increase in Annexin A2 protein expression in the membrane fractions of mIMCD3 cells treated with MBCD PS liposomes. CaOx and MBCD PS liposomes were found to differentially affect membrane fluidity in mIMCD3 cells. Importantly, CaOx treatment caused an increase in ACSL4 and caspase 9 protein expression, indicating initiation of ferroptosis and apoptosis, respectively. The siRNA mediated knockdown of annexin A2 further augmented the upregulation of caspase 9 after CaOx treatment. Collectively, these findings suggest that Annexin A2, a calcium-binding and plasma membrane repair protein, is upregulated in response to CaOx-induced PS enrichment in mIMCD3 cells.
草酸钙(CaOx)结石形成的机制尚不清楚,尽管复发性肾结石的形成与肾小管细胞暴露于较高的草酸钙和CaOx晶体后的损伤有关。我们假设CaOx诱导带负电荷的磷脂酰丝氨酸(PS)的外化和膜富集,同时增强钙结合蛋白的表达,这是一种防止髓内集管(IMCD)细胞死亡的保护机制。膜联蛋白A2是一种钙依赖性磷脂结合蛋白,可能在CaOx结石形成中起保护作用。小鼠IMCD (mIMCD3)细胞用CaOx处理,然后对膜组分进行靶向脂质组学分析。此外,用甲基- β -环糊精(MBCD) PS脂质体刺激mIMCD3细胞,用Western blotting和密度分析评估Annexin A2。脂质组学分析显示,CaOx处理的mIMCD3细胞的膜组分中富集了多种PS脂质。Western blotting和密度分析进一步表明,MBCD PS脂质体处理的mIMCD3细胞膜组分中Annexin A2蛋白表达显著增加。发现CaOx和MBCD PS脂质体对mIMCD3细胞膜流动性有不同的影响。重要的是,CaOx处理引起ACSL4和caspase 9蛋白表达的增加,分别表明铁下垂和细胞凋亡的开始。siRNA介导的膜联蛋白A2的下调进一步增强了CaOx处理后caspase 9的上调。综上所述,这些发现表明,钙结合和质膜修复蛋白Annexin A2在caox诱导的mIMCD3细胞PS富集反应中上调。
{"title":"Calcium oxalate alters lipid profiles and annexin A2 enrichment in membrane fractions of murine inner medullary collecting duct cells","authors":"Zenab Shahzad ,&nbsp;Ramish Rafay ,&nbsp;Saeed Khan ,&nbsp;Amir Kazory ,&nbsp;Nancy D. Denslow ,&nbsp;Abdel A. Alli","doi":"10.1016/j.bbagen.2025.130868","DOIUrl":"10.1016/j.bbagen.2025.130868","url":null,"abstract":"<div><div>The mechanism underlying calcium oxalate (CaOx) stone formation remains unclear, although recurrent kidney stone formation has been linked to injury of kidney tubular cells in response to their exposure to higher oxalate and CaOx crystals. We hypothesized that CaOx induces the externalization and membrane enrichment of the negatively charged phospholipid phosphatidylserine (PS), while simultaneously enhancing the expression of calcium-binding proteins as a protective mechanism against cell death in inner medullary collecting duct (IMCD) cells. Annexin A2, a calcium-dependent phospholipid-binding protein, may play a protective role in CaOx stone formation. Mouse IMCD (mIMCD3) cells were treated with CaOx before performing a targeted lipidomic analysis of membrane fractions. Additionally, mIMCD3 cells were challenged with methyl-beta-cyclodextrin (MBCD) PS liposomes, Annexin A2 was evaluated by Western blotting and densitometric analysis. Lipidomic analysis revealed an enrichment of multiple PS lipid species in membrane fractions of mIMCD3 cells treated with CaOx. Western blotting and densitometric analysis further demonstrated a significant increase in Annexin A2 protein expression in the membrane fractions of mIMCD3 cells treated with MBCD PS liposomes. CaOx and MBCD PS liposomes were found to differentially affect membrane fluidity in mIMCD3 cells. Importantly, CaOx treatment caused an increase in ACSL4 and caspase 9 protein expression, indicating initiation of ferroptosis and apoptosis, respectively. The siRNA mediated knockdown of annexin A2 further augmented the upregulation of caspase 9 after CaOx treatment. Collectively, these findings suggest that Annexin A2, a calcium-binding and plasma membrane repair protein, is upregulated in response to CaOx-induced PS enrichment in mIMCD3 cells.</div></div>","PeriodicalId":8800,"journal":{"name":"Biochimica et biophysica acta. General subjects","volume":"1869 12","pages":"Article 130868"},"PeriodicalIF":2.2,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145285543","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The F54L mutation of Thioredoxin shows protein instability and increased fluctuations of the catalytic center 硫氧还蛋白的F54L突变表现出蛋白质的不稳定性和催化中心的波动增加。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-13 DOI: 10.1016/j.bbagen.2025.130860
Takumi Baba , Go Ueno , Chika Ohe , Shuku Saji , Sachiko Yamamoto , Masaki Yamamoto , Hiroshi Nakagawa , Nobuo Okazaki , Mamoru Ouchida , Iori Kawasaki Ohmori , Kohei Takeshita
Thioredoxin is a ubiquitous redox protein that acts as an electron donor via its conserved dithiol motif (C32GPC35), catalyzing dithiol–disulfide exchange to regulate the redox state of target proteins. It supports antioxidant defense via peroxiredoxins, facilitates DNA synthesis by donating electrons to ribonucleotide reductase, and regulates redox-sensitive signaling pathways, including those controlling transcription and apoptosis. Neuronal degeneration and chronic kidney disease have been observed in Txn-F54L mutant rats; however, the details of why the Txn mutation causes these phenomena remain unknown. The present study aimed to elucidate the functional and structural changes caused by the F54L mutation. The Thioredoxin-F54L showed less insulin-reducing activity and more thermosensitivity to denaturation in the body temperature range compared to the wild type. The crystal structure revealed that F54 forms hydrophobic interactions with the surrounding hydrophobic amino acids. In addition, molecular dynamics simulation predicts increased fluctuations around the F54L mutation and a tendency for the distance between residues C32 and C35 at the catalytic center to be widened. The increased distance between residues C32 and C35 of the catalytic center may affect the reducing activity of the enzyme on the substrate. The finding that Thioredoxin-F54L is prone to denaturation at normal body temperature may reduce the normally functioning Thioredoxin. These molecular characteristics of Thioredoxin-F54L may be related to brain and kidney disease development in the Txn-F54L rats.
硫氧还蛋白是一种普遍存在的氧化还原蛋白,通过其保守的二硫醇基序(C32GPC35)作为电子供体,催化二硫醇-二硫交换,调节靶蛋白的氧化还原状态。它通过过氧化物还原素支持抗氧化防御,通过向核糖核苷酸还原酶提供电子促进DNA合成,并调节氧化还原敏感信号通路,包括控制转录和凋亡的信号通路。Txn-F54L突变大鼠出现神经元变性和慢性肾脏疾病;然而,为什么Txn突变导致这些现象的细节仍然未知。本研究旨在阐明F54L突变引起的功能和结构变化。与野生型相比,Thioredoxin-F54L在体温范围内表现出更低的胰岛素降低活性和更强的变性热敏性。晶体结构表明,F54与周围的疏水氨基酸形成疏水相互作用。此外,分子动力学模拟预测F54L突变周围的波动增加,催化中心残基C32和C35之间的距离有扩大的趋势。催化中心残基C32和C35之间距离的增加可能会影响酶对底物的还原活性。发现Thioredoxin- f54l在正常体温下容易变性,可能会降低正常功能的Thioredoxin。硫氧还蛋白- f54l的这些分子特征可能与Txn-F54L大鼠脑和肾脏疾病的发生有关。
{"title":"The F54L mutation of Thioredoxin shows protein instability and increased fluctuations of the catalytic center","authors":"Takumi Baba ,&nbsp;Go Ueno ,&nbsp;Chika Ohe ,&nbsp;Shuku Saji ,&nbsp;Sachiko Yamamoto ,&nbsp;Masaki Yamamoto ,&nbsp;Hiroshi Nakagawa ,&nbsp;Nobuo Okazaki ,&nbsp;Mamoru Ouchida ,&nbsp;Iori Kawasaki Ohmori ,&nbsp;Kohei Takeshita","doi":"10.1016/j.bbagen.2025.130860","DOIUrl":"10.1016/j.bbagen.2025.130860","url":null,"abstract":"<div><div>Thioredoxin is a ubiquitous redox protein that acts as an electron donor via its conserved dithiol motif (C32GPC35), catalyzing dithiol–disulfide exchange to regulate the redox state of target proteins. It supports antioxidant defense via peroxiredoxins, facilitates DNA synthesis by donating electrons to ribonucleotide reductase, and regulates redox-sensitive signaling pathways, including those controlling transcription and apoptosis. Neuronal degeneration and chronic kidney disease have been observed in <em>Txn</em>-F54L mutant rats; however, the details of why the <em>Txn</em> mutation causes these phenomena remain unknown. The present study aimed to elucidate the functional and structural changes caused by the F54L mutation. The Thioredoxin-F54L showed less insulin-reducing activity and more thermosensitivity to denaturation in the body temperature range compared to the wild type. The crystal structure revealed that F54 forms hydrophobic interactions with the surrounding hydrophobic amino acids. In addition, molecular dynamics simulation predicts increased fluctuations around the F54L mutation and a tendency for the distance between residues C32 and C35 at the catalytic center to be widened. The increased distance between residues C32 and C35 of the catalytic center may affect the reducing activity of the enzyme on the substrate. The finding that Thioredoxin-F54L is prone to denaturation at normal body temperature may reduce the normally functioning Thioredoxin. These molecular characteristics of Thioredoxin-F54L may be related to brain and kidney disease development in the <em>Txn</em>-F54L rats.</div></div>","PeriodicalId":8800,"journal":{"name":"Biochimica et biophysica acta. General subjects","volume":"1869 12","pages":"Article 130860"},"PeriodicalIF":2.2,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145069073","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development of a polyclonal antibody against the protein encoded by the metabolic syndrome-associated gene for dissecting its function and underlying mechanism 针对代谢综合征相关基因编码蛋白的多克隆抗体的研制,以解剖其功能和潜在机制。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-10-16 DOI: 10.1016/j.bbagen.2025.130870
Jia Jing Cai , Yi Lin Shen , Jia Lin , Jun Tao Ren , Yan Zhi Yi , Xue Cheng Li , Ke Xin Jia , Jun Yi Liu , Guo Ming Su , Yong Yan Song , Qi Wei Guo , Ding Zhi Fang
The metabolic syndrome-associated gene (MSAG) encodes a polypeptide of MSAG composed of 110 amino acids and was observed to responds to high glucose conditions. However, scant studies have been documented since it was first reported in 2009. The function of MSAG and its underlying mechanisms remain unclear. To explore them, antibodies against MSAG are needed. Therefore, the current study aimed to generate a polyclonal antibody against MSAG and assess its applications. The pET-28a-mMSAG vector was constructed for prokaryotic expression. The recombinant MSAG was obtained and identified with a coverage of 100 %. Subsequently, a polyclonal antibody against MSAG was prepared by rabbit immunization with an antibody titer exceeding 1:128,000 as determined by ELISA. The prepared antibody was validated using MSAG knockdown mouse and HepG2 cells. The mRNA and protein levels of MSAG were lower in MSAG knockdown mouse livers and HepG2 cells. Additionally, MSAG mRNA and protein levels in mouse hepatic tissues were significantly increased following the intervention with a high carbohydrate diet as evaluated by RT-qPCR and western blotting using the prepared antibody. This reproducibly demonstrated that MSAG was involved in the regulation of glucose metabolism. Taken together, the rabbit anti-MSAG polyclonal antibody has been successfully generated in the current study, which lays the foundation for future studies to explore the functions of MSAG and its underlying mechanisms.
代谢综合征相关基因(MSAG)编码由110个氨基酸组成的MSAG多肽,并被观察到对高糖条件作出反应。然而,自2009年首次报道以来,很少有研究记录在案。MSAG的功能及其潜在机制尚不清楚。为了探索它们,需要针对MSAG的抗体。因此,本研究旨在制备一种抗MSAG的多克隆抗体,并对其应用前景进行评价。构建pET-28a-mMSAG载体进行原核表达。重组MSAG得到并鉴定,覆盖率为100% %。经兔免疫制备抗MSAG的多克隆抗体,ELISA测定抗体效价超过1:12万8千。用MSAG敲除小鼠和HepG2细胞对制备的抗体进行验证。MSAG敲除小鼠肝脏和HepG2细胞中MSAG mRNA和蛋白水平均降低。此外,利用制备的抗体进行RT-qPCR和western blotting检测,高碳水化合物饮食干预后,小鼠肝组织中MSAG mRNA和蛋白水平显著升高。这可重复地证明MSAG参与糖代谢的调节。综上所述,本研究成功制备了兔抗MSAG多克隆抗体,为进一步研究MSAG的功能及其机制奠定了基础。
{"title":"Development of a polyclonal antibody against the protein encoded by the metabolic syndrome-associated gene for dissecting its function and underlying mechanism","authors":"Jia Jing Cai ,&nbsp;Yi Lin Shen ,&nbsp;Jia Lin ,&nbsp;Jun Tao Ren ,&nbsp;Yan Zhi Yi ,&nbsp;Xue Cheng Li ,&nbsp;Ke Xin Jia ,&nbsp;Jun Yi Liu ,&nbsp;Guo Ming Su ,&nbsp;Yong Yan Song ,&nbsp;Qi Wei Guo ,&nbsp;Ding Zhi Fang","doi":"10.1016/j.bbagen.2025.130870","DOIUrl":"10.1016/j.bbagen.2025.130870","url":null,"abstract":"<div><div>The metabolic syndrome-associated gene (<em>MSAG</em>) encodes a polypeptide of MSAG composed of 110 amino acids and was observed to responds to high glucose conditions. However, scant studies have been documented since it was first reported in 2009. The function of MSAG and its underlying mechanisms remain unclear. To explore them, antibodies against MSAG are needed. Therefore, the current study aimed to generate a polyclonal antibody against MSAG and assess its applications. The pET-28a-m<em>MSAG</em> vector was constructed for prokaryotic expression. The recombinant MSAG was obtained and identified with a coverage of 100 %. Subsequently, a polyclonal antibody against MSAG was prepared by rabbit immunization with an antibody titer exceeding 1:128,000 as determined by ELISA. The prepared antibody was validated using <em>MSAG</em> knockdown mouse and HepG2 cells. The mRNA and protein levels of <em>MSAG</em> were lower in <em>MSAG</em> knockdown mouse livers and HepG2 cells. Additionally, <em>MSAG</em> mRNA and protein levels in mouse hepatic tissues were significantly increased following the intervention with a high carbohydrate diet as evaluated by RT-qPCR and western blotting using the prepared antibody. This reproducibly demonstrated that MSAG was involved in the regulation of glucose metabolism. Taken together, the rabbit anti-MSAG polyclonal antibody has been successfully generated in the current study, which lays the foundation for future studies to explore the functions of MSAG and its underlying mechanisms.</div></div>","PeriodicalId":8800,"journal":{"name":"Biochimica et biophysica acta. General subjects","volume":"1869 12","pages":"Article 130870"},"PeriodicalIF":2.2,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145318210","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Rhipicephalus microplus triosephosphate isomerase dimer interface is stabilized by a key cysteine residue 微头猪三磷酸异构酶二聚体界面由一个关键的半胱氨酸残基稳定。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-12 DOI: 10.1016/j.bbagen.2025.130857
Luiz Saramago , Nallely Cabrera , Beatriz Aguirre , Helga Gomes , Bruno Moraes , Valdir Braz , Itabajara da Silva Vaz Jr. , Mayra A. Marques , Jerson L. Silva , Tomohiro Okagawa , Satoru Konnai , Ruy Pérez-Montfort , Carlos Logullo , Jorge Moraes
The functional significance of a non-conserved cysteine residue (C86) proximal to the interfacial region of Rhipicephalus microplus triosephosphate isomerase (RmTIM) was investigated through systematic substitution with aspartic acid (C86D), lysine (C86K), and alanine (C86A) via site-directed mutagenesis. Kinetic analyses revealed substantial perturbations in enzymatic parameters for the C86D and C86K variants, with marked alterations in maximal velocity (Vmax), substrate affinity (Km), catalytic turnover (kcat), and catalytic efficiency (kcat/Km). Thermodynamic destabilization was universally observed across all mutants via Protein Thermal Shift assays, with reductions in melting temperature (Tm) ranging from 15.7 to 27.1 °C relative to the wild-type enzyme (Wt-TIM). Chemical denaturation studies employing guanidine hydrochloride demonstrated heightened susceptibility to unfolding in all mutants, with destabilization profiles following the order: C86K > C86D > C86A. Computational structural analyses elucidated molecular mechanisms underlying these perturbations. Disruption of a putative salt bridge between residues D49 and K18 was predicted in the C86K mutant, potentially destabilizing the dimeric interface. Comparative free energy calculations (ΔG) further corroborated these findings: Wt-TIM exhibited a ΔG of −21.2 kcal/mol and an interfacial contact area of 1604.8 Å2, indicative of robust dimeric stabilization. In contrast, the C86K mutant displayed diminished stability (ΔG = −16.0 kcal/mol) despite an expanded interface (1615.6 Å2), suggesting compromised packing efficiency. These observations imply that C86, while not directly conserved, plays a critical structural role in maintaining interfacial integrity and catalytic competence. The pronounced destabilization and kinetic impairment observed in the C86K variant highlight the residue's significance in RmTIM functionality. This residue-specific destabilization strategy may aid in the rational design of acaricidal compounds targeting interfacial regions of RmTIM, taking advantage of structural vulnerabilities produced by non-conserved residues.
采用定点诱变的方法,系统替换了天冬氨酸(C86D)、赖氨酸(C86K)和丙氨酸(C86A),研究了微头猪三磷酸酯异构酶(RmTIM)界面附近的非保守半胱氨酸残基(C86)的功能意义。动力学分析显示,C86D和C86K变体的酶促参数发生了实质性的扰动,最大速度(Vmax)、底物亲和力(Km)、催化周转率(kcat)和催化效率(kcat/Km)发生了显著变化。通过蛋白质热移分析,所有突变体都普遍观察到热力学不稳定,相对于野生型酶(Wt-TIM),熔化温度(Tm)降低了15.7至27.1 °C。使用盐酸胍的化学变性研究表明,所有突变体对展开的敏感性都提高了,不稳定谱的顺序如下:C86K > C86D > C86A。计算结构分析阐明了这些扰动背后的分子机制。在C86K突变体中,预测残基D49和K18之间假定的盐桥断裂,可能破坏二聚体界面的稳定。比较自由能计算(ΔG)进一步证实了这些发现:Wt-TIM表现出-21.2 kcal/mol的ΔG和1604.8 Å2的界面接触面积,表明二聚体稳定。相比之下,C86K突变体表现出稳定性降低(ΔG = -16.0 kcal/mol),尽管扩大了界面(1615.6 Å2),表明包装效率降低。这些观察结果表明,C86虽然不是直接保守的,但在维持界面完整性和催化能力方面起着关键的结构作用。在C86K变体中观察到的明显的不稳定和动力学损伤突出了残基在RmTIM功能中的重要性。这种残基特异性不稳定策略可能有助于合理设计针对RmTIM界面区域的杀螨化合物,利用非保守残基产生的结构脆弱性。
{"title":"Rhipicephalus microplus triosephosphate isomerase dimer interface is stabilized by a key cysteine residue","authors":"Luiz Saramago ,&nbsp;Nallely Cabrera ,&nbsp;Beatriz Aguirre ,&nbsp;Helga Gomes ,&nbsp;Bruno Moraes ,&nbsp;Valdir Braz ,&nbsp;Itabajara da Silva Vaz Jr. ,&nbsp;Mayra A. Marques ,&nbsp;Jerson L. Silva ,&nbsp;Tomohiro Okagawa ,&nbsp;Satoru Konnai ,&nbsp;Ruy Pérez-Montfort ,&nbsp;Carlos Logullo ,&nbsp;Jorge Moraes","doi":"10.1016/j.bbagen.2025.130857","DOIUrl":"10.1016/j.bbagen.2025.130857","url":null,"abstract":"<div><div>The functional significance of a non-conserved cysteine residue (C86) proximal to the interfacial region of <em>Rhipicephalus microplus</em> triosephosphate isomerase (RmTIM) was investigated through systematic substitution with aspartic acid (C86D), lysine (C86K), and alanine (C86A) via site-directed mutagenesis. Kinetic analyses revealed substantial perturbations in enzymatic parameters for the C86D and C86K variants, with marked alterations in maximal velocity (<em>V</em><sub>max</sub>), substrate affinity (<em>K</em><sub>m</sub>), catalytic turnover (<em>k</em><sub>cat</sub>), and catalytic efficiency (<em>k</em><sub>cat</sub>/<em>K</em><sub>m</sub>). Thermodynamic destabilization was universally observed across all mutants via Protein Thermal Shift assays, with reductions in melting temperature (<em>T</em><sub>m</sub>) ranging from 15.7 to 27.1 °C relative to the wild-type enzyme (Wt-TIM). Chemical denaturation studies employing guanidine hydrochloride demonstrated heightened susceptibility to unfolding in all mutants, with destabilization profiles following the order: C86K &gt; C86D &gt; C86A. Computational structural analyses elucidated molecular mechanisms underlying these perturbations. Disruption of a putative salt bridge between residues D49 and K18 was predicted in the C86K mutant, potentially destabilizing the dimeric interface. Comparative free energy calculations (ΔG) further corroborated these findings: Wt-TIM exhibited a ΔG of −21.2 kcal/mol and an interfacial contact area of 1604.8 Å<sup>2</sup>, indicative of robust dimeric stabilization. In contrast, the C86K mutant displayed diminished stability (ΔG = −16.0 kcal/mol) despite an expanded interface (1615.6 Å<sup>2</sup>), suggesting compromised packing efficiency. These observations imply that C86, while not directly conserved, plays a critical structural role in maintaining interfacial integrity and catalytic competence. The pronounced destabilization and kinetic impairment observed in the C86K variant highlight the residue's significance in RmTIM functionality. This residue-specific destabilization strategy may aid in the rational design of acaricidal compounds targeting interfacial regions of RmTIM, taking advantage of structural vulnerabilities produced by non-conserved residues.</div></div>","PeriodicalId":8800,"journal":{"name":"Biochimica et biophysica acta. General subjects","volume":"1869 12","pages":"Article 130857"},"PeriodicalIF":2.2,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145063432","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
AMPK regulates BK-channel current in CA1 hippocampal neurons AMPK调节CA1海马神经元的bk通道电流。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-22 DOI: 10.1016/j.bbagen.2025.130862
Ricardo Esquivel-Garcia, Jorge Bravo-Martinez, Karina Bermeo, Isabel Arenas, David E. Garcia
AMP-activated protein kinase (AMPK) is a fundamental energy sensor fine-tuning cellular activity based on ATP availability. On the other hand, BK-channel current is tightly regulated by leptin, which in turn regulates neuronal excitability by modulating ion channels such as the BK-channel. However, this mechanism remains unclear to date. In this work we aimed to determine whether AMPK mediates the leptin regulation on BK-channel. We hypothesized that leptin regulation of BK-channel through AMPK underlies the modulating changes in neuronal excitability of CA1 hippocampal neurons. By using patch-clamping methods on CA1 pyramidal neurons in brain slices and biochemical reagents, we found that AMPK activation with AICAR inhibits BK-channel current, while AMPK inhibition with Compound C enhances BK-channel activity. Remarkably, AMPK activation reverses BK-channel current enhanced by leptin supporting an AMPK-dependent metabolic regulation of BK. Accordingly, current-clamp experiments revealed that AMPK manipulations significantly affect leptin responses on CA1 neuronal firing. These results support AMPK as a key mediator of the interplay between leptin and neuronal excitability, readily integrating metabolic signals with the computing state of firing outputs in CA1 hippocampal neurons.
ATP活化蛋白激酶(AMPK)是一种基于ATP可用性微调细胞活性的基本能量传感器。另一方面,bk通道电流受到瘦素的严格调节,瘦素反过来通过调节离子通道(如bk通道)来调节神经元的兴奋性。然而,这一机制至今仍不清楚。在这项工作中,我们旨在确定AMPK是否介导瘦素对bk通道的调节。我们假设瘦素通过AMPK调控bk通道是CA1海马神经元兴奋性调节变化的基础。通过脑切片CA1锥体神经元的膜片箝位方法和生化试剂,我们发现用AICAR激活AMPK可抑制bk通道电流,而用化合物C抑制AMPK可增强bk通道活性。值得注意的是,AMPK激活逆转了瘦素增强的BK通道电流,支持AMPK依赖性的BK代谢调节。因此,电流钳实验显示,AMPK操作显著影响瘦素对CA1神经元放电的反应。这些结果支持AMPK作为瘦素和神经元兴奋性之间相互作用的关键中介,容易将代谢信号与CA1海马神经元放电输出的计算状态整合起来。
{"title":"AMPK regulates BK-channel current in CA1 hippocampal neurons","authors":"Ricardo Esquivel-Garcia,&nbsp;Jorge Bravo-Martinez,&nbsp;Karina Bermeo,&nbsp;Isabel Arenas,&nbsp;David E. Garcia","doi":"10.1016/j.bbagen.2025.130862","DOIUrl":"10.1016/j.bbagen.2025.130862","url":null,"abstract":"<div><div>AMP-activated protein kinase (AMPK) is a fundamental energy sensor fine-tuning cellular activity based on ATP availability. On the other hand, BK-channel current is tightly regulated by leptin, which in turn regulates neuronal excitability by modulating ion channels such as the BK-channel. However, this mechanism remains unclear to date. In this work we aimed to determine whether AMPK mediates the leptin regulation on BK-channel. We hypothesized that leptin regulation of BK-channel through AMPK underlies the modulating changes in neuronal excitability of CA1 hippocampal neurons. By using patch-clamping methods on CA1 pyramidal neurons in brain slices and biochemical reagents, we found that AMPK activation with AICAR inhibits BK-channel current, while AMPK inhibition with Compound C enhances BK-channel activity. Remarkably, AMPK activation reverses BK-channel current enhanced by leptin supporting an AMPK-dependent metabolic regulation of BK. Accordingly, current-clamp experiments revealed that AMPK manipulations significantly affect leptin responses on CA1 neuronal firing. These results support AMPK as a key mediator of the interplay between leptin and neuronal excitability, readily integrating metabolic signals with the computing state of firing outputs in CA1 hippocampal neurons.</div></div>","PeriodicalId":8800,"journal":{"name":"Biochimica et biophysica acta. General subjects","volume":"1869 12","pages":"Article 130862"},"PeriodicalIF":2.2,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145136334","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Alterations in the transcriptome of human primary bronchial epithelial cells exposed to emissions from a heated tobacco product 暴露于加热烟草制品排放物的人原代支气管上皮细胞转录组的改变。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-10-10 DOI: 10.1016/j.bbagen.2025.130869
M. Davigo , F. Caiment , M. Verheijen , F.J. van Schooten , M. van Herwijnen , A. Mommers , A. Opperhuizen , R. Talhout , A.H.V. Remels

Introduction

IQOS is a Heated Tobacco Product marketed as reduced-risk alternative to cigarettes. This is based on limited industry-independent toxicological evidence.

Methods

Cigarette Smoke Extract (CSE) and IQOS extract (IQOSE) were generated by puffing mainstream emissions in PBS. Nicotine levels were quantified via liquid chromatography-mass spectrometry (LC-MS). Subsequently, undifferentiated Primary human Bronchial Epithelial Cells (PBECs) from three donors were exposed (24 h) to 1 %CSE, 1 %IQOSE, 3 %IQOSE (v/v), or nicotine concentrations (1.5, 6 or 18 μg/mL), representative of the levels present in the extracts. Transcriptomic alterations were assessed via RNA sequencing, and specific mRNA alterations were validated at the protein level by Western blot.

Results

IQOSE contained about 4-fold more nicotine than CSE. Nicotine did not significantly affect PBECs transcriptome. Substantial differences in the amount of differentially expressed genes (DEGs) were observed in response to CSE and IQOSE between donors. However, in all donors, 3 %IQOSE exposure downregulated pathways involved in cell cycle progress. In addition, both mRNA and protein levels of molecules controlling autophagy and mitophagy increased in response to IQOSE in one donor, and the disease Chronic Obstructive Pulmonary Disease (COPD) was enriched in cells from two donors upon exposure to CSE or IQOSE. In the most responsive donor, pathways associated with ER-stress and DNA replication were deregulated.

Conclusions

Despite significant inter-donor variability, IQOSE induced specific gene signatures associated with pathways known to be involved in (smoking-related) lung diseases in all donors. Collectively, these findings provide novel insights into the molecular toxicity of IQOS mainstream emissions in human bronchial epithelial cells.
IQOS是一种加热烟草产品,作为香烟的低风险替代品销售。这是基于有限的独立于行业的毒理学证据。方法:在PBS中雾化主流排放物生成香烟烟雾提取物(CSE)和IQOS提取物(IQOSE)。通过液相色谱-质谱(LC-MS)测定尼古丁水平。随后,将来自三个供体的未分化的原代人支气管上皮细胞(PBECs)暴露于1 %CSE、1 %IQOSE、3 %IQOSE (v/v)或尼古丁浓度(1.5、6或18 μg/mL)中(代表提取物中存在的水平)(24 h)。通过RNA测序评估转录组学改变,并通过Western blot在蛋白质水平验证特异性mRNA改变。结果:IQOSE的尼古丁含量约为CSE的4倍。尼古丁对PBECs转录组无显著影响。不同供者对CSE和IQOSE的反应中,差异表达基因(DEGs)的数量存在显著差异。然而,在所有供体中,3 %IQOSE暴露下调了参与细胞周期进程的途径。此外,在一个供体中,控制自噬和有丝自噬的分子的mRNA和蛋白水平在IQOSE的作用下升高,并且在暴露于CSE或IQOSE的两个供体细胞中,慢性阻塞性肺疾病(COPD)富集。在最敏感的供体中,与内质网应激和DNA复制相关的途径被解除了管制。结论:尽管供体间存在显著差异,IQOSE诱导的特异性基因特征与已知参与所有供体(吸烟相关)肺部疾病的途径相关。总的来说,这些发现为IQOS主流排放物在人支气管上皮细胞中的分子毒性提供了新的见解。
{"title":"Alterations in the transcriptome of human primary bronchial epithelial cells exposed to emissions from a heated tobacco product","authors":"M. Davigo ,&nbsp;F. Caiment ,&nbsp;M. Verheijen ,&nbsp;F.J. van Schooten ,&nbsp;M. van Herwijnen ,&nbsp;A. Mommers ,&nbsp;A. Opperhuizen ,&nbsp;R. Talhout ,&nbsp;A.H.V. Remels","doi":"10.1016/j.bbagen.2025.130869","DOIUrl":"10.1016/j.bbagen.2025.130869","url":null,"abstract":"<div><h3>Introduction</h3><div>IQOS is a Heated Tobacco Product marketed as reduced-risk alternative to cigarettes. This is based on limited industry-independent toxicological evidence.</div></div><div><h3>Methods</h3><div>Cigarette Smoke Extract (CSE) and IQOS extract (IQOSE) were generated by puffing mainstream emissions in PBS. Nicotine levels were quantified <em>via</em> liquid chromatography-mass spectrometry (LC-MS). Subsequently, undifferentiated Primary human Bronchial Epithelial Cells (PBECs) from three donors were exposed (24 h) to 1 %CSE, 1 %IQOSE, 3 %IQOSE (<em>v</em>/v), or nicotine concentrations (1.5, 6 or 18 μg/mL), representative of the levels present in the extracts. Transcriptomic alterations were assessed <em>via</em> RNA sequencing, and specific mRNA alterations were validated at the protein level by Western blot.</div></div><div><h3>Results</h3><div>IQOSE contained about 4-fold more nicotine than CSE. Nicotine did not significantly affect PBECs transcriptome. Substantial differences in the amount of differentially expressed genes (DEGs) were observed in response to CSE and IQOSE between donors. However, in all donors, 3 %IQOSE exposure downregulated pathways involved in cell cycle progress. In addition, both mRNA and protein levels of molecules controlling autophagy and mitophagy increased in response to IQOSE in one donor, and the disease Chronic Obstructive Pulmonary Disease (COPD) was enriched in cells from two donors upon exposure to CSE or IQOSE. In the most responsive donor, pathways associated with ER-stress and DNA replication were deregulated.</div></div><div><h3>Conclusions</h3><div>Despite significant inter-donor variability, IQOSE induced specific gene signatures associated with pathways known to be involved in (smoking-related) lung diseases in all donors. Collectively, these findings provide novel insights into the molecular toxicity of IQOS mainstream emissions in human bronchial epithelial cells.</div></div>","PeriodicalId":8800,"journal":{"name":"Biochimica et biophysica acta. General subjects","volume":"1869 12","pages":"Article 130869"},"PeriodicalIF":2.2,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145273567","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Rapid kinase activity detection and kinetic analysis using a convenient EGFR FRET-based detection probe 使用方便的EGFR fret检测探针快速检测激酶活性和动力学分析。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-08 DOI: 10.1016/j.bbagen.2025.130854
Kittitat Jaengwang , Suleeporn Pommayon , Chanikan Sonklin , Kiattawee Choowongkomon , Dujdaun Waraho-Zhmayev , Lueacha Tabtimmai
In modern drug discovery, there is a pressing need for rapid, cost-effective, and accessible methods to evaluate the biological activities of newly synthesized compounds. Traditional kinase assay platforms are often labor-intensive, time-consuming, and require specialized equipment or expertise. To address these limitations, we developed and validated a convenient in vitro kinase assay based on a recombinant biosensor, Picchu-B, constructed using a bacterial expression system. Picchu-B, derived from the live-cell EGFR FRET biosensor Picchu, was successfully expressed as a highly soluble, fluorescent protein. It served as a direct Probe for EGFR kinase, enabling real-time FRET-based detection of kinase activity. Optimization of Picchu-B concentration revealed a linear correlation between FRET signal intensity and EGFR-TK levels. The biosensor demonstrated high selectivity for EGFR and its clinically relevant mutants (e.g., T790M/L858R), with minimal cross-reactivity to unrelated kinases such as JAK-2. Enzyme kinetic studies confirmed nucleotide specificity of EGFR-TK in the presence of Picchu-B. This study highlights Picchu-B as a practical and scalable tool for EGFR-targeted drug screening, offering significant advantages in speed, and simplicity over conventional approaches.
在现代药物发现中,迫切需要快速、经济、可及的方法来评价新合成化合物的生物活性。传统的激酶检测平台通常是劳动密集型的,耗时的,并且需要专门的设备或专业知识。为了解决这些局限性,我们开发并验证了一种基于重组生物传感器Picchu-B的便捷的体外激酶测定方法,该方法使用细菌表达系统构建。Picchu- b来源于活细胞EGFR FRET生物传感器Picchu,成功表达为高可溶性荧光蛋白。它作为EGFR激酶的直接探针,能够实时检测基于fret的激酶活性。Picchu-B浓度优化显示FRET信号强度与EGFR-TK水平呈线性相关。该生物传感器对EGFR及其临床相关突变体(如T790M/L858R)具有高选择性,对无关激酶(如JAK-2)具有极小的交叉反应性。酶动力学研究证实了EGFR-TK在Picchu-B存在下的核苷酸特异性。这项研究强调了Picchu-B作为一种实用且可扩展的egfr靶向药物筛选工具,与传统方法相比,在速度和简单性方面具有显著优势。
{"title":"Rapid kinase activity detection and kinetic analysis using a convenient EGFR FRET-based detection probe","authors":"Kittitat Jaengwang ,&nbsp;Suleeporn Pommayon ,&nbsp;Chanikan Sonklin ,&nbsp;Kiattawee Choowongkomon ,&nbsp;Dujdaun Waraho-Zhmayev ,&nbsp;Lueacha Tabtimmai","doi":"10.1016/j.bbagen.2025.130854","DOIUrl":"10.1016/j.bbagen.2025.130854","url":null,"abstract":"<div><div>In modern drug discovery, there is a pressing need for rapid, cost-effective, and accessible methods to evaluate the biological activities of newly synthesized compounds. Traditional kinase assay platforms are often labor-intensive, time-consuming, and require specialized equipment or expertise. To address these limitations, we developed and validated a convenient in vitro kinase assay based on a recombinant biosensor, Picchu-B, constructed using a bacterial expression system. Picchu-B, derived from the live-cell EGFR FRET biosensor Picchu, was successfully expressed as a highly soluble, fluorescent protein. It served as a direct Probe for EGFR kinase, enabling real-time FRET-based detection of kinase activity. Optimization of Picchu-B concentration revealed a linear correlation between FRET signal intensity and EGFR-TK levels. The biosensor demonstrated high selectivity for EGFR and its clinically relevant mutants (e.g., T790M/L858R), with minimal cross-reactivity to unrelated kinases such as JAK-2. Enzyme kinetic studies confirmed nucleotide specificity of EGFR-TK in the presence of Picchu-B. This study highlights Picchu-B as a practical and scalable tool for EGFR-targeted drug screening, offering significant advantages in speed, and simplicity over conventional approaches.</div></div>","PeriodicalId":8800,"journal":{"name":"Biochimica et biophysica acta. General subjects","volume":"1869 12","pages":"Article 130854"},"PeriodicalIF":2.2,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145032448","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evidence for singlet oxygen production from indocyanine green by electron paramagnetic resonance 电子顺磁共振证明吲哚菁绿产生单线态氧。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-22 DOI: 10.1016/j.bbagen.2025.130861
Magdalena Szpunar , David Aebisher , Bogumił Cieniek , Ireneusz Stefaniuk , Łukasz Dubiel , Andrzej Wal
Indocyanine green (ICG) is a well-known dye used for cardiovascular fluorescence imaging in medicine and a potential photosensitizer for photodynamic therapy. Using electron paramagnetic resonance (EPR), we have shown that illumination of aqueous solutions of ICG leads to the generation of singlet oxygen. The use of a selective spin trap allowed for the rate of singlet oxygen generation to be determined which provides evidence that ICG undergoes Type II photosensitization.
吲哚菁绿(ICG)是一种众所周知的用于心血管荧光成像的染料,也是一种潜在的光动力治疗光敏剂。利用电子顺磁共振(EPR),我们已经证明了ICG水溶液的照明导致单线态氧的产生。选择性自旋阱的使用使单线态氧生成速率得以确定,这提供了ICG经历II型光敏化的证据。
{"title":"Evidence for singlet oxygen production from indocyanine green by electron paramagnetic resonance","authors":"Magdalena Szpunar ,&nbsp;David Aebisher ,&nbsp;Bogumił Cieniek ,&nbsp;Ireneusz Stefaniuk ,&nbsp;Łukasz Dubiel ,&nbsp;Andrzej Wal","doi":"10.1016/j.bbagen.2025.130861","DOIUrl":"10.1016/j.bbagen.2025.130861","url":null,"abstract":"<div><div>Indocyanine green (ICG) is a well-known dye used for cardiovascular fluorescence imaging in medicine and a potential photosensitizer for photodynamic therapy. Using electron paramagnetic resonance (EPR), we have shown that illumination of aqueous solutions of ICG leads to the generation of singlet oxygen. The use of a selective spin trap allowed for the rate of singlet oxygen generation to be determined which provides evidence that ICG undergoes Type II photosensitization.</div></div>","PeriodicalId":8800,"journal":{"name":"Biochimica et biophysica acta. General subjects","volume":"1869 12","pages":"Article 130861"},"PeriodicalIF":2.2,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145136361","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
P2X7 receptor contributes to DNA damage repair and acquisition of malignant phenotypes in irradiated human glioblastoma cells P2X7受体参与辐照人胶质母细胞瘤细胞DNA损伤修复和恶性表型获得。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-10-22 DOI: 10.1016/j.bbagen.2025.130873
Hiromu Seki , Kazuki Kitabatake , Fumiaki Uchiumi , Sei-ichi Tanuma , Mitsutoshi Tsukimoto
Radiation therapy for cancer takes advantage of the higher sensitivity of tumor cells to radiation compared to normal tissue, but some cancers, such as glioblastoma (GBM) and malignant melanoma, acquire radiation resistance (radioresistance), rendering treatment ineffective. Radioresistance is characterized by strong activation of DNA repair mechanisms in response DNA damage induced by radiation, together with possession of malignant property such as enhanced invasiveness and metastasis, though the molecular mechanisms involved remain to be fully established. Here, we show that P2X7 receptor-specific inhibitors suppress the γ-irradiation-induced DNA damage response (DDR) and enhance cell death of A172 GBM cells. In contrast, ATP, a P2X7 receptor ligand, promotes the DDR and suppresses cell death. Irradiation immediately induced ATP release from cells, and P2X7 receptor inhibitor suppressed the release of ATP. Furthermore, P2X7 receptor inhibitors suppress the release of high mobility group box 1 (HMGB1), which is known to promote cancer cell migration. Inhibitors of the receptor for advanced glycation end products (RAGE) also suppress ATP-induced cell motility, indicating that the P2X7-HMGB1-RAGE pathway contributes to radiation-induced malignant transformation. These data indicate firstly that the P2X7 receptor promotes the γ-irradiation-induced DDR, leading to increased resistance of GBM cells to γ-radiation-induced death, and secondly that the P2X7 receptor and extracellular ATP may be involved in the γ-irradiation-induced acquisition of malignant property such as cytoskeletal changes and enhanced motility in GBM cells.
癌症的放射治疗利用了肿瘤细胞比正常组织对辐射更高的敏感性,但一些癌症,如胶质母细胞瘤(GBM)和恶性黑色素瘤,获得了辐射抗性(radiresistant),使治疗无效。辐射抗性的特征是DNA修复机制在响应辐射引起的DNA损伤时被强烈激活,同时具有恶性性质,如增强侵袭性和转移性,尽管涉及的分子机制尚未完全确定。在这里,我们发现P2X7受体特异性抑制剂抑制γ辐照诱导的DNA损伤反应(DDR),并增强A172 GBM细胞的细胞死亡。相反,P2X7受体配体ATP可促进DDR并抑制细胞死亡。辐照立即诱导ATP从细胞中释放,而P2X7受体抑制剂抑制ATP的释放。此外,P2X7受体抑制剂抑制高迁移率组框1 (HMGB1)的释放,而HMGB1是促进癌细胞迁移的已知物质。晚期糖基化终产物受体(RAGE)的抑制剂也抑制atp诱导的细胞运动,表明P2X7-HMGB1-RAGE通路参与辐射诱导的恶性转化。这些数据表明,首先,P2X7受体促进γ辐射诱导的DDR,导致GBM细胞对γ辐射诱导的死亡的抵抗力增强;其次,P2X7受体和细胞外ATP可能参与γ辐射诱导的GBM细胞获得恶性特性,如细胞骨架变化和运动增强。
{"title":"P2X7 receptor contributes to DNA damage repair and acquisition of malignant phenotypes in irradiated human glioblastoma cells","authors":"Hiromu Seki ,&nbsp;Kazuki Kitabatake ,&nbsp;Fumiaki Uchiumi ,&nbsp;Sei-ichi Tanuma ,&nbsp;Mitsutoshi Tsukimoto","doi":"10.1016/j.bbagen.2025.130873","DOIUrl":"10.1016/j.bbagen.2025.130873","url":null,"abstract":"<div><div>Radiation therapy for cancer takes advantage of the higher sensitivity of tumor cells to radiation compared to normal tissue, but some cancers, such as glioblastoma (GBM) and malignant melanoma, acquire radiation resistance (radioresistance), rendering treatment ineffective. Radioresistance is characterized by strong activation of DNA repair mechanisms in response DNA damage induced by radiation, together with possession of malignant property such as enhanced invasiveness and metastasis, though the molecular mechanisms involved remain to be fully established. Here, we show that P2X7 receptor-specific inhibitors suppress the γ-irradiation-induced DNA damage response (DDR) and enhance cell death of A172 GBM cells. In contrast, ATP, a P2X7 receptor ligand, promotes the DDR and suppresses cell death. Irradiation immediately induced ATP release from cells, and P2X7 receptor inhibitor suppressed the release of ATP. Furthermore, P2X7 receptor inhibitors suppress the release of high mobility group box 1 (HMGB1), which is known to promote cancer cell migration. Inhibitors of the receptor for advanced glycation end products (RAGE) also suppress ATP-induced cell motility, indicating that the P2X7-HMGB1-RAGE pathway contributes to radiation-induced malignant transformation. These data indicate firstly that the P2X7 receptor promotes the γ-irradiation-induced DDR, leading to increased resistance of GBM cells to γ-radiation-induced death, and secondly that the P2X7 receptor and extracellular ATP may be involved in the γ-irradiation-induced acquisition of malignant property such as cytoskeletal changes and enhanced motility in GBM cells.</div></div>","PeriodicalId":8800,"journal":{"name":"Biochimica et biophysica acta. General subjects","volume":"1869 12","pages":"Article 130873"},"PeriodicalIF":2.2,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145367421","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Biochimica et biophysica acta. General subjects
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1