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Enhancing soybean tolerance to drought by homologous expression of cytokinin synthase gene GmIPT10 细胞分裂素合成酶基因GmIPT10的同源表达提高大豆的抗旱能力
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-15 DOI: 10.1016/j.bbagen.2025.130848
Xuan Lan Thi Hoang , Nguyen Nguyen Chuong , Nguyen Cao Nguyen , Nguyen Ngoc Hai , Dung Tien Le , Yasuko Watanabe , Keiichi Mochida , Tien-Dung Nguyen , Henry T Nguyen , Lam-Son Phan Tran , Nguyen Phuong Thao
Climatic change-induced osmotic stresses, especially drought and salinity, have arisen as major environmental constraints to crop productivity and sustainable agriculture. Previously, soybean GmIPT10, which encodes an adenine isopentenyl transferase enzyme working in the biosynthesis of cytokinin phytohormone, has been identified as a drought-responsive gene. In this study, the aim is to explore the drought-associated attributes of GmIPT10 in planta, by using homologous expression system. Our findings demonstrated that the transgenic plants might acquire better drought tolerance potential. Following the drought application at vegetative stage, they not only had higher drought-tolerance index by 3–4-fold but also displayed certain advantages in maintaining agronomic traits such as better plant growth, dry biomass accumulation and cellular water contents under adverse conditions than the wild-type plants. Importantly, the greater enhancement in antioxidant enzymatic activities in the transgenic plants (i.e. 2.4–3.8-fold increase) compared with the WT counterparts (1.2–2.3-fold increase) indicated the better defense ability towards drought-induced oxidative stress of the former group. Additional investigation on the drought effects at the reproductive stage further highlighted a less inhibition status of the photosynthetic activities in the transgenic lines, whereby they displayed more active gaseous exchange, higher chlorophyll contents and photochemical efficiency. Although there was no difference in average seed weights, the drought-treated transgenic plants could maintain higher average pod numbers by 10 %, which contributed to higher productivity. Taking these data altogether, our results demonstrated the beneficial role of soybean IPT10 and its mediating actions in alleviating the adverse drought effects on plants.
气候变化引起的渗透胁迫,特别是干旱和盐碱化,已成为作物生产力和可持续农业的主要环境制约因素。大豆GmIPT10编码一种参与细胞分裂素植物激素生物合成的腺嘌呤异戊烯基转移酶,已被确定为干旱响应基因。本研究旨在利用同源表达系统探讨植物GmIPT10的干旱相关属性。结果表明,转基因植株具有较好的抗旱潜力。营养期抗旱处理后,不仅抗旱指数提高了3 - 4倍,而且在逆境条件下植株生长、干生物量积累和细胞含水量等农艺性状的保持上也比野生型有一定优势。重要的是,转基因植株的抗氧化酶活性比WT植株(增加1.2 - 2.3倍)提高了2.4 - 3.8倍,表明转基因植株对干旱诱导的氧化应激具有更好的防御能力。对生殖期干旱效应的进一步研究表明,转基因系的光合活性受到较少的抑制,表现出更活跃的气体交换、更高的叶绿素含量和光化学效率。虽然在平均种子重量上没有差异,但干旱处理的转基因植株平均荚果数可以保持较高的10%,这有助于提高产量。综合这些数据,我们的研究结果证明了大豆IPT10及其介导作用在缓解干旱对植物的不利影响方面的有益作用。
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引用次数: 0
Unraveling the power of TOMM40: Driving PHB1-mediated mtDNA release and mitophagy to fuel breast cancer progression 揭示TOMM40的力量:驱动phb1介导的mtDNA释放和线粒体自噬促进乳腺癌进展
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-13 DOI: 10.1016/j.bbagen.2025.130851
Lei Pan, Feixia Ma, Hongchen Zhang, Yin Duan

Background

In breast cancer (BRCA), mitophagy is essential for the survival and metastasis of cancer cells. However, the interaction between translocase of the outer mitochondrial membrane 40 (TOMM40) and prohibitin 1 (PHB1) in regulating mitophagy in BRCA remains poorly understood.

Methods

Based on bioinformatics analysis, the interaction between PHB1 and key mitophagy regulators in BRCA was explored. The effects of mitochondrial division inhibitor-1 (Mdivi-1) and Fluorizoline on mitophagy, cell viability, and sphere formation ability in MDA-MB-231 cells were assessed. In the cell model activated by carbonyl cyanide m-chlorophenylhydrazone (CCCP) to induce mitophagy, the effects of TOMM40 on cell viability, sphere formation ability, mitochondrial membrane potential, reactive oxygen species (ROS) levels, mitochondrial DNA (mtDNA) release, and PHB1 regulation were analyzed. In vivo, the impact of TOMM40 knockdown on tumor progression and mitophagy was also evaluated.

Results

PHB1 interacted with TOMM40. Mdivi-1 or Fluorizoline treatment inhibited mitophagy, and significantly reduced BRCA cell viability and sphere formation. CCCP treatment induced mitophagy, increased mtDNA release and PHB1 levels, decreased mitochondrial membrane potential and ROS, and promoted cell viability and sphere formation ability, which were all reversed by TOMM40 knockdown. Additionally, TOMM40 knockdown led to decreased PHB1 levels and increased ROS accumulation in tumor tissue, thus repressing tumor progression.

Conclusion

This study identifies TOMM40 as a key regulator that enhances PHB1-mediated mtDNA release and induces mitophagy in BRCA cells, thus promoting breast cancer progression.
背景:在乳腺癌(BRCA)中,线粒体自噬对癌细胞的生存和转移至关重要。然而,线粒体外膜转座酶40 (TOMM40)和禁止蛋白1 (PHB1)在调节BRCA线粒体自噬中的相互作用仍然知之甚少。方法:基于生物信息学分析,探讨PHB1与BRCA中关键丝裂调节因子之间的相互作用。观察线粒体分裂抑制剂-1 (Mdivi-1)和氟唑啉对MDA-MB-231细胞线粒体自噬、细胞活力和成球能力的影响。在羰基氰化物间氯苯腙(CCCP)诱导线粒体自噬的细胞模型中,分析了TOMM40对细胞活力、成球能力、线粒体膜电位、活性氧(ROS)水平、线粒体DNA (mtDNA)释放和PHB1调控的影响。在体内,我们还评估了TOMM40基因敲低对肿瘤进展和线粒体自噬的影响。结果:PHB1与TOMM40相互作用。Mdivi-1或氟唑啉处理抑制了有丝分裂,显著降低了BRCA细胞活力和球的形成。CCCP处理诱导线粒体自噬,增加mtDNA释放和PHB1水平,降低线粒体膜电位和ROS,提高细胞活力和成球能力,这些都被TOMM40敲除逆转。此外,TOMM40敲低导致肿瘤组织中PHB1水平降低,ROS积累增加,从而抑制肿瘤进展。结论:本研究确定TOMM40是促进phb1介导的BRCA细胞mtDNA释放,诱导线粒体自噬,从而促进乳腺癌进展的关键调控因子。
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引用次数: 0
Inhibition of phosphodiesterase 4 and 7 regulates breast cancer cell proliferation 抑制磷酸二酯酶4和磷酸二酯酶7调节乳腺癌细胞增殖。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-13 DOI: 10.1016/j.bbagen.2025.130850
Carla Mayora Justel , Tamara Valladares , Lucía Gargiulo , Verónica González-Pardo , Maximiliano De Sousa , María del Carmen Esandi , Carlos Davio , Isabel Lüthy , Ariana Bruzzone

Purpose

cAMP regulates key processes in mammary cell biology. Previous studies suggested reduced cAMP production in more malignant cells. This study investigates the role of cAMP in mammary biology using non-tumor (MCF-10A  and HBL-100) and tumor (MCF-7 and MDA-MB-231) human breast cell lines.

Methods

cAMP levels were quantified using a competitive radio-binding assay. Cell proliferation and viability were assessed by cell counting and MTT assay. Gene expression was analyzed by real-time PCR and immunofluorescence. Additional assays included migration, colony formation, annexin V/IP staining, comet assay, and caspase-3 activity. Public datasets were consulted. Phosphodiesterase (PDE) inhibitors were tested: the broad-spectrum PDE inhibitor IBMX (3-Isobutyl-1-methylxanthine), the PDE4-selective inhibitor roflumilast, and the PDE7-selective inhibitor BRL-50481.

Results

Non-tumor cells produced more cAMP than tumor cells, with or without IBMX. IBMX decreases cell proliferation and viability in all cell lines. Gene expression data revealed higher ADCY2, 3, 4, 5, 6, and 8 expression in normal tissues. Roflumilast reduced cell viability in all tested cells, while the PDE7-specific inhibitor BRL-50481 only affected MCF-7 cells. All PDE inhibitors exhibited an additive effect with tamoxifen, reducing MCF-7 cell viability. In tumor cells roflumilast decreased cell migration. In MDA-MB-231 cells, although IBMX and roflumilast showed a trend toward further decreasing viability compared to doxorubicin or paclitaxel alone, the differences were not statistically significant.

Conclusion

The selective PDE4 inhibitor roflumilast demonstrated potential as a therapeutic agent when combined with specific breast cancer treatments, offering a novel approach in breast cancer therapy.
目的:cAMP调控乳腺细胞生物学的关键过程。先前的研究表明,在更多的恶性细胞中cAMP的产生减少。本研究利用非肿瘤(MCF-10 A和HBL-100)和肿瘤(MCF-7和MDA-MB-231)人乳腺细胞系研究cAMP在乳腺生物学中的作用。方法:采用竞争性放射结合法定量测定cAMP水平。采用细胞计数和MTT法检测细胞增殖和活力。采用实时荧光定量PCR和免疫荧光分析基因表达。其他检测包括迁移、菌落形成、膜联蛋白V/IP染色、彗星检测和caspase-3活性。查阅了公共数据集。检测磷酸二酯酶(PDE)抑制剂:广谱PDE抑制剂IBMX(3-异丁基-1-甲基黄嘌呤)、pde4选择性抑制剂罗氟司特和pde7选择性抑制剂BRL-50481。结果:不论有无IBMX,非肿瘤细胞均比肿瘤细胞产生更多的cAMP。IBMX降低了所有细胞系的细胞增殖和活力。基因表达数据显示ADCY2、3、4、5、6和8在正常组织中表达较高。罗氟司特降低了所有测试细胞的细胞活力,而pde7特异性抑制剂BRL-50481仅影响MCF-7细胞。所有PDE抑制剂都表现出与他莫昔芬的叠加效应,降低MCF-7细胞活力。在肿瘤细胞中,罗氟司特减少细胞迁移。在MDA-MB-231细胞中,与单独使用阿霉素或紫杉醇相比,虽然IBMX和罗氟米司特有进一步降低细胞活力的趋势,但差异无统计学意义。结论:选择性PDE4抑制剂罗氟米司特与特异性乳腺癌治疗药物联合使用,为乳腺癌治疗提供了新的途径。
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引用次数: 0
Editorial: Nondomain biopolymers – Flexible molecular strategies for diverse biological processes 社论:非结构域生物聚合物——多种生物过程的灵活分子策略。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-06 DOI: 10.1016/j.bbagen.2025.130847
Shinichi Nakagawa
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引用次数: 0
IRF1 transcriptionally activates ALOX15B to enhance ferroptosis sensitivity in triple-negative breast cancer IRF1转录激活ALOX15B,增强三阴性乳腺癌铁下垂敏感性
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-30 DOI: 10.1016/j.bbagen.2025.130846
Wei Peng, Yi Xie, Bofeng Duan, Fuyong Qian, Zhifeng Fan, Wei Zheng
This study focused on the transcriptional activation of arachidonate 15-lipoxygenase type B (ALOX15B) by interferon regulatory factor 1 (IRF1) to promote ferroptosis in triple-negative breast cancer (TNBC) cells. In this study, TNBC and adjacent non-cancerous tissues were collected to detect ALOX15B expression. Functional studies were conducted by overexpressing or knocking down ALOX15B in TNBC cells treated with erastin (a ferroptosis inducer). The role of IRF1 as a potential transcriptional regulator of ALOX15B was explored using bioinformatics tools, dual-luciferase reporter gene assays, electrophoretic mobility shift assays (EMSA), and chromatin immunoprecipitation (ChIP) followed by quantitative polymerase chain reaction (qPCR). Our results revealed that ALOX15B expression was significantly lower in TNBC tissues compared to adjacent non-cancerous tissues. Functionally, ALOX15B overexpression inhibited ferroptosis-related proteins SLC7A11 and GPX4, decreased cell viability and glutathione levels, and increased malondialdehyde levels, reactive oxygen species levels, and lipid oxidation. Conversely, knocking down ALOX15B had the opposite effect. Bioinformatics analysis predicted IRF1 as a potential transcriptional regulator of ALOX15B, which was confirmed using dual-luciferase reporter gene assays, EMSA, and ChIP-qPCR. IRF1 overexpression increased ALOX15B expression and promoted ferroptosis in TNBC cells, while IRF1 knockdown had the opposite effect. Importantly, knocking down IRF1 and overexpressing ALOX15B simultaneously demonstrated that IRF1 enhanced TNBC cell ferroptosis sensitivity by promoting ALOX15B expression. Collectively, our study suggests that IRF1 transcriptionally activates ALOX15B to enhance ferroptosis sensitivity in TNBC cells. These findings provide new insights into the molecular mechanisms underlying TNBC progression and suggest potential therapeutic targets for TNBC treatment.
本研究的重点是干扰素调节因子1 (IRF1)对花生四烯酸15-脂氧合酶B型(ALOX15B)的转录激活,以促进三阴性乳腺癌(TNBC)细胞的铁凋亡。本研究收集TNBC及癌旁非癌组织检测ALOX15B表达。功能研究是通过在经erastin(一种铁凋亡诱导剂)处理的TNBC细胞中过表达或敲低ALOX15B进行的。利用生物信息学工具、双荧光素酶报告基因测定、电泳迁移位移测定(EMSA)和染色质免疫沉淀(ChIP)以及定量聚合酶链反应(qPCR),研究了IRF1作为ALOX15B潜在转录调节因子的作用。我们的研究结果显示,与邻近的非癌组织相比,ALOX15B在TNBC组织中的表达显著降低。功能上,ALOX15B过表达抑制铁中毒相关蛋白SLC7A11和GPX4,降低细胞活力和谷胱甘肽水平,增加丙二醛水平、活性氧水平和脂质氧化。相反,敲除ALOX15B会产生相反的效果。生物信息学分析预测IRF1是ALOX15B的潜在转录调节因子,这一点通过双荧光素酶报告基因检测、EMSA和ChIP-qPCR得到证实。IRF1过表达增加ALOX15B表达,促进TNBC细胞铁凋亡,而IRF1敲低则相反。重要的是,敲低IRF1和过表达ALOX15B同时表明,IRF1通过促进ALOX15B的表达增强了TNBC细胞铁凋亡的敏感性。总之,我们的研究表明,IRF1转录激活ALOX15B,增强TNBC细胞的铁凋亡敏感性。这些发现为TNBC进展的分子机制提供了新的见解,并提出了TNBC治疗的潜在治疗靶点。
{"title":"IRF1 transcriptionally activates ALOX15B to enhance ferroptosis sensitivity in triple-negative breast cancer","authors":"Wei Peng,&nbsp;Yi Xie,&nbsp;Bofeng Duan,&nbsp;Fuyong Qian,&nbsp;Zhifeng Fan,&nbsp;Wei Zheng","doi":"10.1016/j.bbagen.2025.130846","DOIUrl":"10.1016/j.bbagen.2025.130846","url":null,"abstract":"<div><div>This study focused on the transcriptional activation of arachidonate 15-lipoxygenase type B (ALOX15B) by interferon regulatory factor 1 (IRF1) to promote ferroptosis in triple-negative breast cancer (TNBC) cells. In this study, TNBC and adjacent non-cancerous tissues were collected to detect ALOX15B expression. Functional studies were conducted by overexpressing or knocking down ALOX15B in TNBC cells treated with erastin (a ferroptosis inducer). The role of IRF1 as a potential transcriptional regulator of ALOX15B was explored using bioinformatics tools, dual-luciferase reporter gene assays, electrophoretic mobility shift assays (EMSA), and chromatin immunoprecipitation (ChIP) followed by quantitative polymerase chain reaction (qPCR). Our results revealed that ALOX15B expression was significantly lower in TNBC tissues compared to adjacent non-cancerous tissues. Functionally, ALOX15B overexpression inhibited ferroptosis-related proteins SLC7A11 and GPX4, decreased cell viability and glutathione levels, and increased malondialdehyde levels, reactive oxygen species levels, and lipid oxidation. Conversely, knocking down ALOX15B had the opposite effect. Bioinformatics analysis predicted IRF1 as a potential transcriptional regulator of ALOX15B, which was confirmed using dual-luciferase reporter gene assays, EMSA, and ChIP-qPCR. IRF1 overexpression increased ALOX15B expression and promoted ferroptosis in TNBC cells, while IRF1 knockdown had the opposite effect. Importantly, knocking down IRF1 and overexpressing ALOX15B simultaneously demonstrated that IRF1 enhanced TNBC cell ferroptosis sensitivity by promoting ALOX15B expression. Collectively, our study suggests that IRF1 transcriptionally activates ALOX15B to enhance ferroptosis sensitivity in TNBC cells. These findings provide new insights into the molecular mechanisms underlying TNBC progression and suggest potential therapeutic targets for TNBC treatment.</div></div>","PeriodicalId":8800,"journal":{"name":"Biochimica et biophysica acta. General subjects","volume":"1869 10","pages":"Article 130846"},"PeriodicalIF":2.2,"publicationDate":"2025-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144757771","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Nitrosative stress affects mitochondrial respiratory chain complex II and complex IV assemblies in Saccharomyces cerevisiae: S-nitrosylation of complex II 亚硝化应激影响酿酒酵母线粒体呼吸链复合体II和复合体IV组装:复合体II的s -亚硝基化。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-30 DOI: 10.1016/j.bbagen.2025.130845
Sanchita Biswas , Ayantika Sengupta , Shubhojit Das , Chirandeep Dey , Rajib Sengupta , Alok Ghosh , Sanjay Ghosh
The elevated level of nitric oxide (NO) and reactive nitrogen species (RNS) induce nitrosative stress in cells and inhibit mitochondrial respiration. Reports showed that RNS rapidly inactivate complex I, followed by inhibition of complex II, III and IV in isolated mitochondria. However, the mechanism(s) by which NO and RNS inhibit these complexes still unclear. In this study facultative anaerobic yeast Saccharomyces cerevisiae has been used for investigating mitochondrial respiratory dysfunction under nitrosative stress, as four out of five mitochondrial oxidative phosphorylation complexes i.e. complexes II, III, IV and V are structurally conserved from yeast to human. Using microbiological growth assays, we showed that S. cerevisiae wild type W3O3 cells treated with graded concentration of sodium nitroprusside (SNP) and S-Nitrosoglutathione (GSNO) induce nitrosative stress, and cell growth was severely compromised under the respiratory proficient rich glycerol-ethanol media. Both the whole cell and the mitochondrial oxygen consumption rates were also significantly compromised under nitrosative stress. Surprisingly, mitochondrial respiratory chain complex II succinate dehydrogenase (SDH) of S. cerevisiae was found S-nitrosylated and therefore inactivated under nitrosative stress. Endogenous RNS produced by S-nitrosoglutathione reductase mutant cells of S. cerevisiae also showed increased S-nitrosylation of SDH. Complex III and IV activities were irreversibly inhibited in S. cerevisiae under nitrosative stress. Interestingly, protein tyrosine nitration was also enhanced in mitochondria in a dose dependent manner upon SNP treatment. Reduced expressions of both Sdh2 (succinate dehydrogenase subunit-2) and Cox2 (mitochondrial complex IV subunit) were observed at the transcription and translation level in S. cerevisiae under nitrosative stress. Blue Native-PAGE followed by Western blotting analysis, further revealed significantly reduced native complex II and the complex III and IV containing super-complexes assemblies in consequences of nitrosative stress in S. cerevisiae. Henceforth, the present in vivo study provides for the first-time novel information on the modification of mitochondrial complexes under nitrosative stress which in turn regulates the mitochondrial respiratory chain complexes assembly in S. cerevisiae.
一氧化氮(NO)和活性氮(RNS)水平升高引起细胞亚硝化应激,抑制线粒体呼吸。报告显示,RNS在分离的线粒体中迅速灭活复合体I,随后抑制复合体II、III和IV。然而,NO和RNS抑制这些复合物的机制尚不清楚。在本研究中,我们利用兼性厌氧酵母研究亚硝化应激下的线粒体呼吸功能障碍,因为5个线粒体氧化磷酸化复合物中有4个,即复合物II、III、IV和V在结构上从酵母到人类是保守的。通过微生物生长试验,研究人员发现,用梯度浓度的硝普钠(SNP)和s -亚硝基谷胱甘肽(GSNO)处理酿酒酵母野生型W3O3细胞可诱导亚硝化应激,细胞生长在富含甘油-乙醇的呼吸系统培养基中受到严重损害。整个细胞和线粒体耗氧量在亚硝化胁迫下也显著降低。令人惊讶的是,酵母线粒体呼吸链复合体II琥珀酸脱氢酶(SDH)在亚硝化胁迫下被发现s -亚硝基化,因此失活。酿酒酵母s -亚硝基谷胱甘肽还原酶突变细胞产生的内源性RNS也显示SDH的s -亚硝基化增加。在亚硝化胁迫下,酿酒酵母复合物III和IV活性不可逆地受到抑制。有趣的是,在SNP处理后,线粒体中的蛋白酪氨酸硝化也以剂量依赖的方式增强。在亚硝酸盐胁迫下,Sdh2(琥珀酸脱氢酶亚基-2)和Cox2(线粒体复合体IV亚基)在转录和翻译水平上的表达均有所降低。Blue native - page随后进行Western blotting分析,进一步揭示了在亚硝化胁迫下葡萄球菌的天然复合物II和含有超复合物组装体的复合物III和IV显著减少。因此,目前的体内研究首次提供了亚硝化应激下线粒体复合物修饰的新信息,这反过来调节了酿酒酵母线粒体呼吸链复合物的组装。
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引用次数: 0
Coupling of muscarinic receptors to protein kinase C underlies a feedback regulation of cell responsiveness to acetylcholine 毒蕈碱受体与蛋白激酶C的偶联是细胞对乙酰胆碱反应的反馈调节的基础。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-24 DOI: 10.1016/j.bbagen.2025.130844
Ekaterina A. Dymova, Olga A. Rogachevskaja, Vladislav V. Sokolov, Elizaveta Е. Kopylova, Natalia V. Kabanova, Stanislav S. Kolesnikov
Acetylcholine (ACh)-induced Ca2+ signaling was analyzed in HEK-293 (WT-HEK) cells and their derivatives, IP3R1-HEK, IP3R2-HEK, and IP3R3-HEK with a single functional IP3 receptor isoform, IP3R1, IP3R2, or IP3R3, respectively. The initial stimulation of WT-HEK cells triggered a prolonged feedback process that diminished their responsiveness to ACh. Inhibition of protein kinase C (PKC) with Gö 6983 or calphostin C prevented the decline of ACh responsivity, indicating that PKC was involved. Using IP3R1-HEK, IP3R2-HEK, and IP3R3-HEK cells, it was shown that PKC was capable of regulating Ca2+ release through each IP3R isoform. While in control, IP3 uncaging triggered Ca2+ transients in ∼15 % of cells loaded with caged-Ins(145)P3/PM, PKC inhibition enlarged this fraction nearly twofold. These observations suggested that in ACh transduction machinery, PKC targeted primarily IP3-driven Ca2+ release. ADP and 5-HT triggered Ca2+ transients in WT-HEK cells and CHO cells expressing endogenous P2Y and recombinant 5HT2C receptors, respectively. The responsiveness of WT-HEK cells to ADP and CHO cells to 5-HT applied serially declined after the initial cell stimulation but PKC inhibition precluded this phenomenon almost completely. The coupling of GPCRs to PKC in living cells, muscarinic and P2Y receptors in WT-HEK cells and 5HT2C receptors in CHO cells, was demonstrated for the first time using real-time fluorescence imaging and sapphireCKAR, a genetically encoded sensor of PKC activity. Altogether, our findings suggest that a PKC-based feedback regulation of agonist-induced Ca2+ release might be a common attribute of transduction of various agonists involving GPCRs coupled to the phosphoinositide cascade.
乙酰胆碱(ACh)诱导的Ca2+信号传导在HEK-293 (WT-HEK)细胞及其衍生物IP3R1- hek、IP3R2- hek和IP3R3- hek中分别具有单一功能IP3受体异构体IP3R1、IP3R2或IP3R3。WT-HEK细胞的初始刺激触发了一个延长的反馈过程,降低了它们对乙酰氨基酚的反应性。用Gö 6983或calphostin C抑制蛋白激酶C (PKC)可阻止乙酰胆碱反应性的下降,表明PKC参与其中。使用IP3R1-HEK、IP3R2-HEK和IP3R3-HEK细胞,我们发现PKC能够通过IP3R各亚型调节Ca2+释放。而在对照组中,IP3释放触发了约15% %的携带cage - ins (145)P3/PM的细胞中的Ca2+瞬态,PKC抑制使这一比例增加了近两倍。这些观察结果表明,在ACh转导机制中,PKC主要针对ip3驱动的Ca2+释放。ADP和5-HT分别在表达内源性P2Y和重组5HT2C受体的WT-HEK细胞和CHO细胞中触发Ca2+瞬态。初始细胞刺激后,WT-HEK细胞对ADP和CHO细胞对5-HT的反应性依次下降,但PKC抑制几乎完全阻止了这一现象。利用实时荧光成像技术和PKC活性基因编码传感器sapphirecar,首次证实了gpcr与活细胞中的PKC、WT-HEK细胞中的毒菌碱和P2Y受体以及CHO细胞中的5HT2C受体的偶联。总之,我们的研究结果表明,基于pkc的激动剂诱导的Ca2+释放的反馈调节可能是各种激动剂转导的共同属性,这些激动剂涉及gpcr偶联到磷酸肌苷级联。
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引用次数: 0
MiR-2779-x, a key microRNA that is related to the tumorigenicity of the MDCK cell line MiR-2779-x,一个与MDCK细胞系致瘤性相关的关键microRNA。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-18 DOI: 10.1016/j.bbagen.2025.130843
Di Yang , Lingwei Huang , Jiachen Shi , Zhenbin Liu , Jiamin Wang , Zhongren Ma , Ayimuguli Abudureyimu , Zilin Qiao , Jianguo Chen
The tumorigenicity of MDCK cell line is a major concern with respect to its safety for vaccine production, the effect of miRNAs on the tumorigenicity of MDCK cells is poorly understood. In this study, we performed miRNA-Seq on two MDCK cell lines with tumorigenic potential and their derived monoclonal cell lines that lack tumorigenicity. Through bioinformatics analysis, we identified differentially expressed miRNAs and conducted GO and KEGG pathway analyses of their target genes. Our results indicated that miR-2779-x and its target genes exhibited the most significant characteristics associated with tumorigenesis. Injection of live cells overexpressing miR-2779-x into nude mice resulted in a markedly reduced tumorigenesis rate (1/10). Overexpression of miR-2779-x significantly decreased the proliferation and migration capabilities of MDCK cells while enhancing their invasive potential. To identify and localize miR-2779-x target genes, we employed bioinformatics prediction, RT-qPCR, immunofluorescence assays (IFA), fluorescence in situ hybridization (FISH), and dual-luciferase reporter assays. We found that miR-2779-x negatively regulates the expression of PI3KR1 and Caspase 9 at both the gene and protein levels. Additionally, miR-2779-x co-localizes with PI3KR1 in the cytoplasm and directly targets the 3’UTR of PI3KR1. Overexpression of PI3KR1 in miR-2779-x-overexpressing cells restored cellular functions, leading to increased proliferation and migration but decreased invasion. Moreover, miR-2779-x modulates MDCK cell growth and tumorigenesis by influencing the expression and phosphorylation levels of proteins involved in the PI3K/AKT and apoptosis signaling pathways. We proposed the key pathways of miRNA involvement in MDCK cell tumorigenicity and initially revealed the function of miR-2779-x in MDCK cell tumorigenicity.
MDCK细胞系的致瘤性是其疫苗生产安全性的主要问题,mirna对MDCK细胞致瘤性的影响尚不清楚。在这项研究中,我们对两个具有致瘤潜力的MDCK细胞系及其衍生的缺乏致瘤性的单克隆细胞系进行了miRNA-Seq分析。通过生物信息学分析,我们鉴定了差异表达的mirna,并对其靶基因进行了GO和KEGG通路分析。我们的研究结果表明,miR-2779-x及其靶基因表现出与肿瘤发生相关的最显著特征。将过表达miR-2779-x的活细胞注射到裸鼠体内,可显著降低肿瘤发生率(1/10)。过表达miR-2779-x可显著降低MDCK细胞的增殖和迁移能力,同时增强其侵袭潜能。为了鉴定和定位miR-2779-x靶基因,我们采用了生物信息学预测、RT-qPCR、免疫荧光测定(IFA)、荧光原位杂交(FISH)和双荧光素酶报告基因测定。我们发现miR-2779-x在基因和蛋白水平上负调控PI3KR1和Caspase 9的表达。此外,miR-2779-x在细胞质中与PI3KR1共定位,直接靶向PI3KR1的3'UTR。在mir -2779-x过表达的细胞中,PI3KR1过表达可以恢复细胞功能,导致增殖和迁移增加,但侵袭减少。此外,miR-2779-x通过影响PI3K/AKT和凋亡信号通路相关蛋白的表达和磷酸化水平来调节MDCK细胞的生长和肿瘤发生。我们提出了miRNA参与MDCK细胞致瘤性的关键途径,并初步揭示了miR-2779-x在MDCK细胞致瘤性中的作用。
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引用次数: 0
Phase separation via protein-protein and protein-RNA networks coordinates ribosome assembly in the nucleolus 相分离通过蛋白质-蛋白质和蛋白质- rna网络协调核糖体在核仁中的组装
IF 2.8 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-16 DOI: 10.1016/j.bbagen.2025.130835
Priyanka Dogra , Richard W. Kriwacki
The nucleolus, the largest membraneless organelle in the nucleus, functions as the site for ribosome biogenesis. While long known for its complex and dynamic structure, our mechanistic understanding of nucleolar organization has advanced dramatically in the past 15 years. The process of phase separation (PS) facilitates the compartmentalization of ribosomal components with assembly factors in the nucleolus, underlying complex ribosome biogenesis processes. Multicomponent PS creates multiple nucleolar sub-compartments that function from inside out as a ribosome assembly line. In this review, we discuss the molecular basis of nucleolar organization, including how different types of protein-protein and protein-RNA interactions create the multilayered architecture that enables ribosome biogenesis. Key proteins including nucleolin, fibrillarin, and nucleophosmin mediate nucleolar compartmentalization through their unique structural features and multivalent interactions. The processes of ribosomal RNA (rRNA) transcription, modification and splicing, and folding are spatially and temporally segregated within different regions of the nucleolus. rRNA matures and changes form along this processing continuum, continually altering its interactions with proteins, creating multiple separate liquid phases that establish sub-compartments. We highlight how both folded domains and intrinsically disordered regions (IDRs) in nucleolar proteins contribute to multivalent interactions underlying PS and nucleolar compartmentalization. We also discuss how perturbation of nucleolar PS alters nucleolar structure, dynamics, and function and contributes to a range of pathological conditions.
核仁是细胞核中最大的无膜细胞器,是核糖体生物发生的场所。虽然核仁的复杂和动态结构早已为人所知,但在过去的15年中,我们对核仁组织的机制理解有了显着的进展。相分离(PS)过程促进了核糖体成分与核核中组装因子的区隔化,是复杂的核糖体生物发生过程的基础。多组分PS产生多个核仁亚室,从内到外作为核糖体装配线发挥作用。在这篇综述中,我们讨论了核仁组织的分子基础,包括不同类型的蛋白质-蛋白质和蛋白质- rna相互作用如何创建使核糖体生物发生的多层结构。核仁蛋白、纤维蛋白和核磷蛋白等关键蛋白通过其独特的结构特征和多价相互作用介导核仁区隔化。核糖体RNA (rRNA)的转录、修饰、剪接和折叠过程在空间和时间上分离于核仁的不同区域。rRNA沿着这一加工连续体成熟并改变形态,不断改变其与蛋白质的相互作用,形成多个独立的液相,建立子区室。我们强调了核仁蛋白中的折叠结构域和内在无序区域(IDRs)如何促进PS和核仁区隔化背后的多价相互作用。我们还讨论了核仁PS的扰动如何改变核仁结构,动力学和功能,并有助于一系列病理条件。
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引用次数: 0
Pharmacological role of MLN4924 in cisplatin-induced acute kidney injury MLN4924在顺铂致急性肾损伤中的药理作用
IF 2.8 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-13 DOI: 10.1016/j.bbagen.2025.130842
Feng Chen , Ayinigaer Yusufu , Gang Li , Xueyun Gao , Danqin Lu , Xiaoyan Wu , Lihua Ni

Background

Cisplatin-induced acute kidney injury (Cis-AKI) is a major complication that limits the clinical use of cisplatin, largely due to its cytotoxic effects on renal tubular epithelial cells. Recent studies have shown that MLN4924, a NEDD8-activating enzyme inhibitor, can modulate key cellular processes such as apoptosis, autophagy, and DNA damage repair. However, its precise role and regulatory mechanisms in the context of Cis-AKI remain largely undefined.

Purpose

This study aimed to elucidate the renoprotective mechanisms of MLN4924 in Cis-AKI.

Materials and methods

A cisplatin-induced nephrotoxicity mouse model and a human renal tubular epithelial (HK−2) damage cellular model were established. Kidney injury was evaluated by histopathology and RNA-sequencing. To explore whether MLN4924 alleviates Cis-AKI via modulation of the p53 and MAPK pathways, we analyzed pathway-specific regulatory changes in response to MLN4924 treatment.

Results

Compared to the group exposed to cisplatin, MLN4924 mitigated the pathological alterations and reduced the expression of molecules associated with renal injury. RNA-sequencing analysis indicated that the p53 and MAPK signaling pathways were inhibited by MLN4924 treatment compared to the cisplatin-exposed group. Moreover, silencing p53 or p38 exacerbates the renal protection conferred by MLN4924 in cisplatin-treated HK-2 cells, while their activation abolishes this effect. Mechanically, p38 activity promoted p53-dependent nephrotoxicity by increasing p53 expression.

Conclusions

MLN4924 exhibits a protective effect against Cis-AKI, as evidenced by inhibition of p53 and MAPK signaling pathways. These results suggest that MLN4924 holds potential as an adjuvant therapeutic agent in the treatment of kidney diseases associated with chemotherapy.
顺铂诱导的急性肾损伤(Cis-AKI)是限制顺铂临床应用的主要并发症,主要是由于其对肾小管上皮细胞的细胞毒性作用。最近的研究表明,nedd8激活酶抑制剂MLN4924可以调节细胞凋亡、自噬和DNA损伤修复等关键细胞过程。然而,其在Cis-AKI中的确切作用和调控机制在很大程度上仍未明确。目的探讨MLN4924在Cis-AKI中的肾保护机制。材料和方法建立顺铂所致肾毒性小鼠模型和人肾小管上皮(HK−2)损伤细胞模型。通过组织病理学和rna测序评估肾损伤。为了探讨MLN4924是否通过调节p53和MAPK通路来缓解Cis-AKI,我们分析了MLN4924治疗后通路特异性的调控变化。结果与顺铂暴露组相比,MLN4924减轻了肾损伤的病理改变,降低了肾损伤相关分子的表达。rna测序分析表明,与顺铂暴露组相比,MLN4924治疗抑制了p53和MAPK信号通路。此外,在顺铂治疗的HK-2细胞中,沉默p53或p38会加重MLN4924赋予的肾脏保护作用,而它们的激活则会消除这种作用。机械上,p38活性通过增加p53表达促进了p53依赖性肾毒性。结论smln4924通过抑制p53和MAPK信号通路,对Cis-AKI具有保护作用。这些结果表明,MLN4924有潜力作为化疗相关肾脏疾病的辅助治疗剂。
{"title":"Pharmacological role of MLN4924 in cisplatin-induced acute kidney injury","authors":"Feng Chen ,&nbsp;Ayinigaer Yusufu ,&nbsp;Gang Li ,&nbsp;Xueyun Gao ,&nbsp;Danqin Lu ,&nbsp;Xiaoyan Wu ,&nbsp;Lihua Ni","doi":"10.1016/j.bbagen.2025.130842","DOIUrl":"10.1016/j.bbagen.2025.130842","url":null,"abstract":"<div><h3>Background</h3><div>Cisplatin-induced acute kidney injury (Cis-AKI) is a major complication that limits the clinical use of cisplatin, largely due to its cytotoxic effects on renal tubular epithelial cells. Recent studies have shown that MLN4924, a NEDD8-activating enzyme inhibitor, can modulate key cellular processes such as apoptosis, autophagy, and DNA damage repair. However, its precise role and regulatory mechanisms in the context of Cis-AKI remain largely undefined.</div></div><div><h3>Purpose</h3><div>This study aimed to elucidate the renoprotective mechanisms of MLN4924 in Cis-AKI.</div></div><div><h3>Materials and methods</h3><div>A cisplatin-induced nephrotoxicity mouse model and a human renal tubular epithelial (HK−2) damage cellular model were established. Kidney injury was evaluated by histopathology and RNA-sequencing. To explore whether MLN4924 alleviates Cis-AKI via modulation of the p53 and MAPK pathways, we analyzed pathway-specific regulatory changes in response to MLN4924 treatment.</div></div><div><h3>Results</h3><div>Compared to the group exposed to cisplatin, MLN4924 mitigated the pathological alterations and reduced the expression of molecules associated with renal injury. RNA-sequencing analysis indicated that the p53 and MAPK signaling pathways were inhibited by MLN4924 treatment compared to the cisplatin-exposed group. Moreover, silencing p53 or p38 exacerbates the renal protection conferred by MLN4924 in cisplatin-treated HK-2 cells, while their activation abolishes this effect. Mechanically, p38 activity promoted p53-dependent nephrotoxicity by increasing p53 expression.</div></div><div><h3>Conclusions</h3><div>MLN4924 exhibits a protective effect against Cis-AKI, as evidenced by inhibition of p53 and MAPK signaling pathways. These results suggest that MLN4924 holds potential as an adjuvant therapeutic agent in the treatment of kidney diseases associated with chemotherapy.</div></div>","PeriodicalId":8800,"journal":{"name":"Biochimica et biophysica acta. General subjects","volume":"1869 10","pages":"Article 130842"},"PeriodicalIF":2.8,"publicationDate":"2025-07-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144633598","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Biochimica et biophysica acta. General subjects
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