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Osmotic stress suppresses osteogenic differentiation by inhibiting nuclear translocation of YAP via perinuclear actin accumulation 渗透胁迫通过核周肌动蛋白积累抑制YAP的核易位,从而抑制成骨分化。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-27 DOI: 10.1016/j.bbagen.2025.130891
Takashi Miyano, Haruka Hasegawa, Toshihiro Sera
Hyperglycemia is a well-recognized cause of osteoblast dysfunction. Recent evidence, however, indicates that elevated extracellular osmolarity associated with hyperglycemia may independently impair osteogenic differentiation. However, the mechanisms underlying these effects remain poorly understood. In this study, we examined how osmotic stress influences osteoblast differentiation, with a focus on actin cytoskeletal remodeling and subcellular localization of the Yes-associated protein (YAP), a mechanosensitive transcriptional coactivator involved in osteogenesis. Using MC3T3-E1 pre-osteoblasts, we found that osteogenic induction enhanced cell proliferation, migration, nuclear deformation, and nuclear translocation of YAP, accompanied by upregulated expression of genes encoding osteogenic markers. In contrast, treatment with either glucose or mannitol, used to isolate the osmotic component of hyperglycemia, preserved nuclear morphology, decreased nuclear localization of YAP, and led to perinuclear actin accumulation, as confirmed by radial profile analysis of actin distribution. These effects were accompanied by downregulation of target genes of YAP and reduction in alkaline phosphatase (ALP)-positive cells. Similar effects observed following treatments with both glucose and mannitol suggest that the impairment arises primarily from osmotic stress rather than from glucose-specific metabolic signaling. Notably, pharmacological inhibition of Rho-associated kinase using Y-27632 attenuated perinuclear actin accumulation, restored nuclear translocation of YAP, and rescued the expression of YAP-dependent osteogenic genes under osmotic conditions. Y-27632 also increased the number of ALP-positive cells after treatment with both glucose and mannitol. These findings underscore cytoskeletal remodeling as a central regulator of YAP activity and osteogenesis under osmotic stress, and propose potential therapeutic targets for skeletal fragility in diabetes.
高血糖是成骨细胞功能障碍的一个公认的原因。然而,最近的证据表明,与高血糖相关的细胞外渗透压升高可能独立地损害成骨分化。然而,这些影响背后的机制仍然知之甚少。在这项研究中,我们研究了渗透应激如何影响成骨细胞分化,重点关注肌动蛋白细胞骨架重塑和yes相关蛋白(YAP)的亚细胞定位,YAP是一种参与成骨的机械敏感转录辅助激活因子。利用MC3T3-E1前成骨细胞,我们发现成骨诱导增强了YAP的细胞增殖、迁移、核变形和核易位,并伴有编码成骨标记基因的表达上调。相比之下,葡萄糖或甘露醇处理,用于分离高血糖的渗透成分,保留核形态,降低YAP的核定位,并导致核周围肌动蛋白积累,这一点得到了肌动蛋白分布的径向剖面分析的证实。这些作用伴随着YAP靶基因的下调和碱性磷酸酶(ALP)阳性细胞的减少。葡萄糖和甘露醇治疗后观察到的类似效果表明,损伤主要是由渗透应激引起的,而不是由葡萄糖特异性代谢信号引起的。值得注意的是,使用Y-27632对rho相关激酶的药理抑制可减轻核周围肌动蛋白的积累,恢复YAP的核易位,并在渗透条件下恢复YAP依赖性成骨基因的表达。经葡萄糖和甘露醇处理后,Y-27632也增加了alp阳性细胞的数量。这些发现强调了细胞骨骼重塑是渗透应激下YAP活性和成骨的中心调节因子,并提出了糖尿病骨骼脆性的潜在治疗靶点。
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引用次数: 0
Ursolic acid activates SIRT6 by enhancing enzyme-substrate interactions and promoting protein structural rearrangement 熊果酸通过增强酶-底物相互作用和促进蛋白质结构重排来激活SIRT6
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-26 DOI: 10.1016/j.bbagen.2025.130890
Zohreh Tabatabaian Nimavard , Nuredin Bakhtiari , Fereshteh Taghavi , Sako Mirzaie , Farangis Ataei , Hamid-Reza Khaledi
Ursolic acid (UA) has emerged as a promising bioactive compound with potential therapeutic effects, particularly in the upregulation of SIRT6, an important protein involved in various cellular processes, including longevity, stress response, and metabolism. Despite the growing interest in UA and its beneficial biological activities, the precise mechanisms governing its interaction with SIRT6 remain inadequately elucidated. This study aims to conduct a comprehensive investigation into the binding affinity of UA to SIRT6, as well as its effects on the protein's stability, kinetics, and structural characteristics.
Molecular dynamics simulations using Schrodinger software analyzed parameters such as radius of gyration, RMSD, RMSF, and binding energy. The SIRT6 gene was cloned into the pET28a vector, expressed in Escherichia coli, and purified via affinity chromatography. Kinetic parameters (Km, Vmax, and Kcat) were assessed using fluorescence enzyme assays, while structural modifications were examined via fluorescence spectroscopy, FTIR, and UV–visible spectrophotometry.
UA significantly enhances SIRT6 stability, reducing its radius of gyration and lowering binding energy from −25.38 to −47.93 kcal/mol. Kinetic analysis revealed a decrease in Km (13 to 10), an increase in Vmax (5013.42 to 9421.48 μM/min), and a rise in Kcat (15.03/s to 281.01/s), improving the Kcat/Km ratio. Structural assessments confirmed UA-induced modifications, increasing alpha-helix content (8.5 % to 26.2 %) and elevating the folding ratio from 0.066 to 14.8. However, it decreased aggregation index from 402.38 to 81.25. This integrative study elucidates UA's molecular influence on SIRT6, underscoring its potential therapeutic relevance across various signaling pathways.
熊果酸(UA)已成为一种具有潜在治疗作用的生物活性化合物,特别是在SIRT6上调方面,SIRT6是一种重要的蛋白质,参与各种细胞过程,包括长寿、应激反应和代谢。尽管人们对UA及其有益的生物活性越来越感兴趣,但控制其与SIRT6相互作用的确切机制仍未充分阐明。本研究旨在全面探讨UA与SIRT6的结合亲和力及其对SIRT6蛋白稳定性、动力学和结构特性的影响。使用薛定谔软件进行分子动力学模拟,分析了旋转半径、RMSD、RMSF和结合能等参数。将SIRT6基因克隆到pET28a载体中,在大肠杆菌中表达,并通过亲和层析纯化。动力学参数(Km、Vmax和Kcat)采用荧光酶测定法评估,结构修饰通过荧光光谱、FTIR和紫外可见分光光度法检测。UA显著增强了SIRT6的稳定性,降低了SIRT6的旋转半径,并将结合能从- 25.38 kcal/mol降低到- 47.93 kcal/mol。动力学分析结果表明,Kcat/Km比值提高,Km减小(13 ~ 10),Vmax增大(5013.42 ~ 9421.48 μM/min), Kcat增大(15.03 ~ 281.01/s), Kcat/Km比值提高。结构评估证实了ua引起的修饰,增加了α -螺旋含量(8.5%至26.2%),并将折叠比从0.066提高到14.8。但其聚集指数从402.38下降到81.25。这项综合研究阐明了UA对SIRT6的分子影响,强调了其在各种信号通路中的潜在治疗相关性。
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引用次数: 0
Cavin-3 promotes TNF expression via the MAPK signaling pathway in lung squamous cell carcinoma 在肺鳞癌中,Cavin-3通过MAPK信号通路促进TNF的表达。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-26 DOI: 10.1016/j.bbagen.2025.130892
Xiaoyan Xu , Yonghong Nie , Jiatuo Xu , Rilei Jiang
Cavin family proteins alter the invasiveness of tumor cells. However, research on the pathogenesis of Cavins in tumors is lacking. To address this knowledge-gap, we conducted a systematic analysis about the mechanism of action of Cavins in cancer. We evaluated the diagnostic value of Cavin-3 and its potential as a new therapeutic target for lung squamous cell carcinoma (LUSC). Bioinformatic analysis showed that Cavin-3 can inhibit LUSC tumor cells by regulating the expression of EREG and IL1A, thereby activating the MAPK pathway to promote the release of tumor necrosis factor (TNF) and other inflammatory factors. Moreover, in vitro experiments have shown that Cavin-3 may promote the expression of inflammatory factors by regulating the MAPK signaling pathway, thereby killing tumor cells and inhibiting tumor proliferation.
Cavin家族蛋白改变肿瘤细胞的侵袭性。然而,对Cavins在肿瘤中的发病机制的研究尚缺乏。为了解决这一知识空白,我们对Cavins在癌症中的作用机制进行了系统的分析。我们评估了Cavin-3的诊断价值及其作为肺鳞状细胞癌(LUSC)新治疗靶点的潜力。生物信息学分析表明,Cavin-3可以通过调节EREG和IL1A的表达,从而激活MAPK通路,促进肿瘤坏死因子(tumor necrosis factor, TNF)等炎症因子的释放,从而抑制LUSC肿瘤细胞。此外,体外实验表明,Cavin-3可能通过调节MAPK信号通路促进炎症因子的表达,从而杀伤肿瘤细胞,抑制肿瘤增殖。
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引用次数: 0
Decoding chromatin nanoscale plasticity in situ: Insights from native AFM imaging 解码染色质纳米级塑性原位:来自原生AFM成像的见解。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-19 DOI: 10.1016/j.bbagen.2025.130887
Hongfeng Cui, Yu Zhang, Tianyu Chen, Mengzhu Guo, Qi Wen, Jiawei Peng, Yifei Yang, Xian Hao
Chromatin structure and its plasticity are central to gene regulation and DNA-associated processes, yet their nanoscale architecture and dynamic assembly remain elusive. Here, we propose a novel in situ approach—combining hypotonic treatment with high-drop spreading—to obtain native, naked chromosomes and visualize chromatin fine structure using atomic force microscopy (AFM). This strategy enables minimally invasive observation of chromatin under near-physiological conditions. We reveal that chromatin is composed of ∼10 nm DNA–histone particles as its fundamental units. Strikingly, these particles exhibit remarkable structural plasticity, dynamically assembling into heterogeneous nucleosome-beaded chains through stacking and partial melting. This challenges the classical “beads-on-a-string” model by demonstrating that chromatin is neither uniform nor static, but structurally versatile at the nanoscale. In addition, we investigated how histone acetylation and ATP modulate chromatin plasticity. Our findings highlight the coexistence of core particle stability and spatial-temporal variability, providing a revised molecular framework for chromatin's functional adaptability. These insights offer a fresh perspective on how chromatin structural diversity underpins its complex regulatory capacity.
染色质结构及其可塑性是基因调控和dna相关过程的核心,但其纳米级结构和动态组装仍然难以捉摸。在这里,我们提出了一种新的原位方法-结合低渗处理和高滴扩散-获得天然的,裸露的染色体,并使用原子力显微镜(AFM)观察染色质精细结构。这种策略可以在接近生理条件下对染色质进行微创观察。我们发现染色质是由~10 nm的dna组蛋白颗粒组成的基本单位。引人注目的是,这些颗粒表现出显著的结构可塑性,通过堆叠和部分熔化动态地组装成异质核小体串珠链。通过证明染色质既不是均匀的也不是静态的,而是在纳米尺度上结构多样,这挑战了经典的“串珠”模型。此外,我们还研究了组蛋白乙酰化和ATP如何调节染色质可塑性。我们的发现强调了核心颗粒稳定性和时空变异性的共存,为染色质的功能适应性提供了一个修订的分子框架。这些见解为染色质结构多样性如何支撑其复杂的调控能力提供了新的视角。
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引用次数: 0
Receptor binding domain of SARS CoV2 spike protein exhibits in vitro liquid-liquid phase separation due to structural disorderedness that may challenge the vaccine-generated antibody binding SARS CoV2刺突蛋白受体结合域由于结构紊乱可能挑战疫苗产生的抗体结合,在体外表现出液-液相分离。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-19 DOI: 10.1016/j.bbagen.2025.130889
Manikanta Sodasani , Abhinav V.K.S. Grandhi , Niharikha Mukala , Jahnavi Chintalapati , Madhuri Vissapragada , Madhumita Aggunna , Ravikiran S. Yedidi
In this study we expressed, purified and demonstrated the protein liquid-liquid phase separation (LLPS) formation by the receptor binding domain (RBD) of coronavirus spike protein in vitro.
Our molecular dynamics simulations revealed multiple structurally disordered regions lacking secondary structural elements within RBD that exhibited high structural flexibility with deviations as high as 6 Å over 500 ns in support of our in vitro findings.
Additionally these disordered regions overlap with epitopes potentially altering their architecture.
Based on these results we conclude that the structural disorderedness of RBD causes LLPS formation in vitro and may potentially challenge the COVID-19 vaccine efficacy.
本研究在体外表达、纯化并证明了冠状病毒刺突蛋白受体结合域(RBD)形成的蛋白液-液相分离(LLPS)。我们的分子动力学模拟显示,RBD中缺乏二级结构元件的多个结构紊乱区域具有高结构灵活性,偏差高达6 Å超过500 ns,支持我们的体外研究结果。此外,这些无序区域与表位重叠,可能会改变它们的结构。基于这些结果,我们得出结论,RBD结构紊乱导致体外LLPS形成,并可能潜在地挑战COVID-19疫苗的功效。
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引用次数: 0
The effect of gold nanoparticle size and shape on the structure and activity of Domain 3 of an alternative sigma factor of Staphylococcus aureus 金纳米颗粒的大小和形状对金黄色葡萄球菌一个备选sigma因子结构域3结构域的结构和活性的影响。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-19 DOI: 10.1016/j.bbagen.2025.130888
Tanaya Chatterjee, Debasmita Sinha

Background

The modern era has witnessed the vast applications of nanoparticles (NPs) ranging from drug delivery to biomedical usages. Herein we report for the first time the effect of gold nanoparticles (AuNPs) of different sizes and shapes on a stress response protein σB from Staphylococcus aureus, the pathogen causing infection. Among the three conserved domains of σB, we focused on Domain 3 which binds to an anti-sigma factor RsbW of S. aureus.

Methods

We explored the interaction of recombinant σB3 (rσB3) with three types of AuNPs; spherical with 10 nm (AuNS10) and 100 nm (AuNS100) diameter and rod shaped (AuNR10). Structural modulations of rσB3 by AuNPs were studied using different biophysical techniques. Native-PAGE was run for rσB3-cRsbW binding assay using AuNR10.

Results

Isothermal titration calorimetry revealed exothermic and endothermic heat changes for rσB3-AuNSs and rσB3-AuNR, respectively. Far-UV CD of rσB3 showed loss of α-helical content with AuNR10 using higher molar ratios of 1:5 and 1:10. Binding to 4,4′-dianilino-1,1′-binaphthyl-5,5′-disulfonic acid (bis-ANS) indicated enhanced fluorescence intensity for rσB3-AuNR10 conjugate, implying unfolding of rσB3 thereby exposing hydrophobic regions. Binding assay of rσB3 with cRsbW displayed impaired protein-protein interaction using rσB3-AuNR10 molar ratio of 1:10. The efficacy of AuNR10 was also observed for the biofilm inhibition by S. aureus.

Conclusions

We show how the size and shape of AuNPs modulate the structure/function of rσB3 of S. aureus.

General significance

Because of the involvement of rσB3 in S. aureus pathogenesis, the structural/functional modulation by AuNR10 could be of therapeutic relevance for nanoparticle-based antibacterial strategies.
背景:现代已经见证了纳米颗粒(NPs)的广泛应用,从药物输送到生物医学用途。本文首次报道了不同大小和形状的金纳米颗粒(AuNPs)对引起感染的病原菌金黄色葡萄球菌应激反应蛋白σB的影响。在σB的3个保守结构域中,我们重点研究了与金黄色葡萄球菌抗σ因子RsbW结合的结构域3。方法:研究重组σB3 (rσB3)与三种类型的AuNPs的相互作用;直径分别为10 nm (AuNS10)和100 nm (AuNS100)的球形和棒状(AuNR10)。采用不同的生物物理技术研究了AuNPs对rσB3的结构调节。使用AuNR10进行rσB3-cRsbW结合实验,采用Native-PAGE。结果:等温滴定量热法分别揭示了rσB3-AuNSs和rσB3-AuNR的放热和吸热变化。rσB3的远紫外CD与aur10的摩尔比为1:5和1:10时,α-螺旋含量下降。与4,4′-二苯胺-1,1′-二萘基-5,5′-二磺酸结合后,rσB3- aunr10偶联物的荧光强度增强,表明rσB3展开,从而暴露疏水区域。rσB3与cRsbW的结合实验表明,当rσB3与aunr10的摩尔比为1:10时,rσB3与cRsbW的蛋白相互作用受损。同时观察了aur10对金黄色葡萄球菌生物膜的抑制作用。结论:我们揭示了AuNPs的大小和形状如何调节金黄色葡萄球菌rσB3的结构/功能。一般意义:由于rσB3参与金黄色葡萄球菌的发病机制,AuNR10的结构/功能调节可能与基于纳米颗粒的抗菌策略具有治疗相关性。
{"title":"The effect of gold nanoparticle size and shape on the structure and activity of Domain 3 of an alternative sigma factor of Staphylococcus aureus","authors":"Tanaya Chatterjee,&nbsp;Debasmita Sinha","doi":"10.1016/j.bbagen.2025.130888","DOIUrl":"10.1016/j.bbagen.2025.130888","url":null,"abstract":"<div><h3>Background</h3><div>The modern era has witnessed the vast applications of nanoparticles (NPs) ranging from drug delivery to biomedical usages. Herein we report for the first time the effect of gold nanoparticles (AuNPs) of different sizes and shapes on a stress response protein <em>σ</em><sup><em>B</em></sup> from <em>Staphylococcus aureus,</em> the pathogen causing infection. Among the three conserved domains of <em>σ</em><sup><em>B</em></sup>, we focused on Domain 3 which binds to an anti-sigma factor RsbW of <em>S. aureus</em>.</div></div><div><h3>Methods</h3><div>We explored the interaction of recombinant <em>σ</em><sup><em>B3</em></sup> (r<em>σ</em><sup><em>B3</em></sup>) with three types of AuNPs; spherical with 10 nm (AuNS10) and 100 nm (AuNS100) diameter and rod shaped (AuNR10). Structural modulations of r<em>σ</em><sup><em>B3</em></sup> by AuNPs <em>were</em> studied using different biophysical techniques. Native-PAGE was run for r<em>σ</em><sup><em>B3</em></sup>-cRsbW binding assay using AuNR10.</div></div><div><h3>Results</h3><div>Isothermal titration calorimetry revealed exothermic and endothermic heat changes for r<em>σ</em><sup><em>B3</em></sup>-AuNSs and r<em>σ</em><sup><em>B3</em></sup>-AuNR, respectively. Far-UV CD of r<em>σ</em><sup><em>B3</em></sup> showed loss of α-helical content with AuNR10 using higher molar ratios of 1:5 and 1:10. Binding to 4,4′-dianilino-1,1′-binaphthyl-5,5′-disulfonic acid (bis-ANS) indicated enhanced fluorescence intensity for r<em>σ</em><sup><em>B3</em></sup>-AuNR10 conjugate, implying unfolding of r<em>σ</em><sup><em>B3</em></sup> thereby exposing hydrophobic regions. Binding assay of r<em>σ</em><sup><em>B3</em></sup> with cRsbW displayed impaired protein-protein interaction using r<em>σ</em><sup><em>B3</em></sup>-AuNR10 molar ratio of 1:10. The efficacy of AuNR10 was also observed for the biofilm inhibition by <em>S. aureus.</em></div></div><div><h3>Conclusions</h3><div>We show how the size and shape of AuNPs modulate the structure/function of r<em>σ</em><sup><em>B3</em></sup> of <em>S. aureus</em>.</div></div><div><h3>General significance</h3><div>Because of the involvement of r<em>σ</em><sup><em>B3</em></sup> in <em>S. aureus</em> pathogenesis, the structural/functional modulation by AuNR10 could be of therapeutic relevance for nanoparticle-based antibacterial strategies.</div></div>","PeriodicalId":8800,"journal":{"name":"Biochimica et biophysica acta. General subjects","volume":"1870 1","pages":"Article 130888"},"PeriodicalIF":2.2,"publicationDate":"2025-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145562553","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Histidine betaine trimethylammonia-lyase, enzyme coupled with terminal urocanate reductase in Shewanella woodyi grown anaerobically 组氨酸甜菜碱三甲氨解酶,木氏希瓦氏菌厌氧生长中与末端尿酸还原酶偶联的酶。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-12 DOI: 10.1016/j.bbagen.2025.130886
Yulia V. Bertsova, Marina V. Serebryakova, Alexander A. Baykov, Alexander V. Bogachev
Bacteria coping with oxygen deficiency can switch to alternative terminal electron acceptors, which can be normal metabolic intermediates or products of dedicated coupled reactions. In the latter case, the genes for the respective terminal reductase and coupling enzyme are expected to cluster in the genome. Here, we determined the roles of two uncharacterized periplasmic proteins encoded by the swoo_3912swoo_3913 gene cluster in the facultatively anaerobic marine bacterium Shewanella woodyi. We confirmed the current database annotation of the former protein as “urocanate reductase” but identified the latter protein as a histidine betaine trimethylammonia-lyase (HBTL). HBTL converts histidine betaine into urocanate and trimethylamine and is remarkably specific for histidine betaine as substrate. HBTL requires Mg2+ for activity and undergoes slow reversible inactivation at low Mg2+ concentrations. HBTL activity was not evident in S. woodyi cells grown aerobically but was induced in cells grown anaerobically. Both histidine betaine and urocanate supported anaerobic S. woodyi growth and, hence, respiration. Similar gene clusters are found in many anaerobic bacteria, suggesting a wide occurrence of the anaerobic respiration pathway discovered in this work in the bacterial world.
应对缺氧的细菌可以切换到替代的终端电子受体,这可以是正常的代谢中间体或专用偶联反应的产物。在后一种情况下,各自的末端还原酶和偶联酶的基因预计会聚集在基因组中。在这里,我们确定了两个由swoo_3912-swoo_3913基因簇编码的未被鉴定的外质蛋白在兼性厌氧海洋细菌希瓦氏菌中的作用。我们确认了前一种蛋白的数据库注释为“尿糖酸还原酶”,而后一种蛋白为组氨酸甜菜碱三甲胺分解酶(HBTL)。HBTL将组氨酸甜菜碱转化为尿酸盐和三甲胺,并且对组氨酸甜菜碱作为底物具有显著的特异性。HBTL需要Mg2+才能激活,并且在低Mg2+浓度下经历缓慢可逆的失活。HBTL活性在好氧培养的木藻细胞中不明显,但在厌氧培养的细胞中被诱导。组氨酸甜菜碱和尿酸盐都支持厌氧木梭菌生长,因此也支持呼吸作用。在许多厌氧菌中都发现了类似的基因簇,这表明本研究发现的厌氧呼吸途径在细菌世界中广泛存在。
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引用次数: 0
Hepatic response to ethanol feeding in a hepatocyte-specific fatty acid binding protein-4 knock out mouse model 肝细胞特异性脂肪酸结合蛋白-4敲除小鼠模型对乙醇喂养的肝脏反应。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-11 DOI: 10.1016/j.bbagen.2025.130885
Neha Attal , Trenton A. Pritt , Melissa Stair , Tony E. Reeves , Iain H. McKillop

Background

Early alcohol-dependent liver disease (ALD) is characterized by increased hepatic fat storage (hepatosteatosis). Fatty acid binding protein 4 (FABP4), a protein not normally expressed in liver, becomes highly expressed in ALD. This study developed a hepatocyte-specific FABP4 mouse knockout (HS-Fabp4−/−) to study liver responses to alcohol.

Methods

An HS-Fabp4−/− mouse was created using a Cre/loxP embryonic stem cell approach. Male and female HS-Fabp4−/− and wildtype (WT; C57Bl/6) mice were maintained on ethanol-drinking water (EtOH-DW) for 4-weeks. Liver damage, triglyceride content and pathology were assessed. Hepatic FABP1–9 mRNA and FABP4 and FABP5 protein were measured. Human hepatoma cell proliferation in response to exogenous FABP4 or FABP5 was analyzed.

Results

Hepatocyte-specific FABP4 deletion was confirmed in HS-Fabp4−/− mice. No gross phenotypic differences were observed between HS-Fabp4−/− and WT. Maintenance on EtOH-DW resulted in microsteatosis, increased hepatic triglycerides, and elevated aspartate and alanine transaminases, with no differences detected between pair-matched HS-Fabp4−/− and WT mice. Hepatic FABP1–9 mRNA analysis revealed increased FABP4 and FABP5 mRNA expression in WT mice, and elevated FABP5 mRNA in HS-Fabp4−/− mice in response to EtOH-DW, effects that were mirrored in serum FABP4/5 protein. Exposure of hepatoma cells to FABP4 or FABP5 revealed FABP4, but not FABP5, stimulated cell proliferation.

Conclusions

Hepatocyte-specific FABP4 deletion does not alter hepatic fat accumulation in response to EtOH feeding. Hepatic FABP4 protein produced in response to EtOH is released from hepatocytes and exogenous FABP4 promotes hepatoma cell proliferation in vitro, an effect not observed for FABP5.
背景:早期酒精依赖性肝病(ALD)的特征是肝脏脂肪储存增加(肝骨赘病)。脂肪酸结合蛋白4 (FABP4),一种在肝脏中不正常表达的蛋白,在ALD中变得高表达。本研究开发了肝细胞特异性FABP4小鼠基因敲除(HS-Fabp4-/-)来研究肝脏对酒精的反应。方法:采用Cre/loxP胚胎干细胞法建立HS-Fabp4-/-小鼠。雄性和雌性HS-Fabp4-/-和野生型(WT; C57Bl/6)小鼠在乙醇饮用水(EtOH-DW)中维持4周。评估肝损害、甘油三酯含量及病理。测定肝脏FABP1-9 mRNA和FABP4、FABP5蛋白表达。分析外源性FABP4或FABP5对人肝癌细胞增殖的影响。结果:在HS-Fabp4-/-小鼠中证实肝细胞特异性FABP4缺失。HS-Fabp4-/-和WT之间没有明显的表型差异。维持EtOH-DW导致微脂肪变性、肝脏甘油三酯升高、天冬氨酸和丙氨酸转氨酶升高,配对的HS-Fabp4-/-和WT小鼠之间没有差异。肝脏FABP1-9 mRNA分析显示,在WT小鼠中FABP4和FABP5 mRNA表达升高,在HS-Fabp4-/-小鼠中FABP5 mRNA表达升高,这反映在血清FABP4/5蛋白中。肝癌细胞暴露于FABP4或FABP5后,发现FABP4刺激细胞增殖,而FABP5没有。结论:肝细胞特异性FABP4缺失不会改变EtOH喂养后肝脏脂肪的积累。在体外实验中,外源性FABP4可促进肝癌细胞增殖,而FABP5则未观察到这种作用。
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引用次数: 0
Pharmacological inhibition of Trypanosoma cruzi aldo-keto reductase (TcAKR) and its effect on benznidazole resistance 克氏锥虫醛酮还原酶的药理抑制及其对苯并硝唑耐药性的影响
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-08 DOI: 10.1016/j.bbagen.2025.130880
Patricia Andrea Garavaglia , Sebastián Aduviri , Pablo Trujillo , Laura Mónica Tasso , Joaquín Juan Bautista Cannata , Monica Pickholz , Gabriela Andrea García
Chagas disease, caused by the protozoan Trypanosoma cruzi, has become a global health concern due to increased globalization. Several studies suggest that the aldo-keto reductase from T. cruzi (TcAKR) is involved in resistance to benznidazole, the drug commonly used to treat this infection.
To further support the role of TcAKR in drug resistance, we evaluated its interaction with four compounds —quercetin, flufenamic acid, phenolphthalein, and menadione—previously reported as inhibitors of other AKRs. Molecular docking was performed to assess affinity and molecular specific interactions, and the inhibitory effects of these compounds on both TcAKR activities —aldo-keto reductase and quinone-oxidoreductase— were experimentally determined.
Binding affinities, in decreasing order, were: quercetin > flufenamic acid > phenolphthalein > menadione. Both quercetin and flufenamic acid interacted with amino acid residues located outside the enzyme's active site. Quercetin completely inhibited both TcAKR activities, while flufenamic acid inhibited approximately 50 %. Phenolphthalein and menadione showed low levels of inhibition. The inhibition profiles of quercetin and flufenamic acid were consistent with a noncompetitive mechanism.
The effect of quercetin on benznidazole resistance was evaluated in transfected parasites overexpressing TcAKR, which are 1.8-fold more resistant to this drug. Quercetin treatment restored benznidazole sensitivity in these parasites, reducing the IC₅₀ to levels comparable to those of control parasites. These results provide further evidence of TcAKR's involvement in benznidazole resistance and suggest that its inhibition can enhance treatment efficacy.
恰加斯病是由原生动物克氏锥虫引起的,由于全球化的加剧,该病已成为一个全球性的健康问题。几项研究表明,克氏锥虫的醛酮还原酶(TcAKR)参与了对苯并硝唑的耐药性,苯并硝唑是通常用于治疗这种感染的药物。为了进一步支持TcAKR在耐药中的作用,我们评估了它与四种化合物的相互作用——槲皮素、氟芬那酸、酚酞和美萘醌——之前被报道为其他akr的抑制剂。通过分子对接来评估亲和力和分子特异性相互作用,并通过实验确定了这些化合物对TcAKR活性-醛酮还原酶和醌氧化还原酶的抑制作用。结合亲和度由高到低依次为:槲皮素;氟胺酸;酚酞;美萘酮。槲皮素和氟芬那酸都与酶活性位点外的氨基酸残基相互作用。槲皮素完全抑制两种taccr活性,而氟芬那酸抑制约50%。酚酞和美萘醌的抑制作用较低。槲皮素和氟芬那酸的抑制作用与非竞争性机制一致。研究了槲皮素对过表达TcAKR的疟原虫对苯并硝唑耐药性的影响,结果表明槲皮素对该药物的耐药性提高了1.8倍。槲皮素处理恢复了这些寄生虫对苯并硝唑的敏感性,将IC₅0降低到与对照寄生虫相当的水平。这些结果进一步证明了TcAKR参与苯并硝唑耐药,并提示其抑制可以提高治疗效果。
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引用次数: 0
Nanobody-based imaging: Advancing precision in molecular diagnostics 基于纳米体的成像:提高分子诊断的精度。
IF 2.2 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-08 DOI: 10.1016/j.bbagen.2025.130884
Zohre Eftekhari, Fatemeh Kazemi-Lomedasht
Molecular imaging is a cornerstone of modern medicine, enabling non-invasive visualization of biological processes at the molecular level. The emergence of nanobodies (Nbs), small single-domain antibody fragments derived from camelids, has transformed this field due to their superior tissue penetration, rapid clearance, and high target specificity compared to conventional antibodies. This review focuses on the integration of Nbs with positron emission tomography (PET) and single-photon emission computed tomography (SPECT) two complementary molecular imaging modalities known for their high sensitivity, quantitative potential, and clinical relevance. Nb-based PET and SPECT imaging probes are emerging as powerful tools for detecting disease-associated molecular targets with exceptional precision. Their unique properties, including high affinity, specificity, and stability, make them ideal candidates for developing advanced radiotracers that enable early disease detection, monitoring of therapeutic responses, and evaluation of novel treatment strategies. Despite these advantages, several challenges remain, such as scalable Nb production, reduction of immunogenicity in clinical applications, and optimization of radiolabeling methods that preserve Nb integrity and function. This review highlights recent advances in Nb engineering, radiolabeling strategies, and preclinical and clinical applications of Nb-based PET and SPECT imaging, while outlining critical directions for future research. By addressing current limitations, Nb-based molecular imaging holds great promise for improving diagnostic accuracy, advancing personalized medicine, and expanding its clinical impact across diverse disease areas.
分子成像是现代医学的基石,能够在分子水平上对生物过程进行无创可视化。纳米体(Nbs)的出现,源自骆驼的小单域抗体片段,由于其与传统抗体相比具有优越的组织穿透性,快速清除和高靶向特异性,已经改变了这一领域。这篇综述的重点是Nbs与正电子发射断层扫描(PET)和单光子发射计算机断层扫描(SPECT)的整合,这两种互补的分子成像方式以其高灵敏度、定量潜力和临床相关性而闻名。基于nb的PET和SPECT成像探针正在成为检测疾病相关分子靶标的强大工具,具有极高的精度。它们独特的特性,包括高亲和力、特异性和稳定性,使它们成为开发先进放射性示踪剂的理想候选者,可以用于早期疾病检测、监测治疗反应和评估新的治疗策略。尽管有这些优势,但仍存在一些挑战,例如可扩展的铌生产,临床应用中免疫原性的降低,以及保持铌完整性和功能的放射性标记方法的优化。本文综述了铌工程、放射性标记策略以及基于铌的PET和SPECT成像的临床前和临床应用方面的最新进展,同时概述了未来研究的关键方向。通过解决当前的局限性,基于nb的分子成像在提高诊断准确性、推进个性化医疗和扩大其在不同疾病领域的临床影响方面具有很大的前景。
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Biochimica et biophysica acta. General subjects
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