Dalpiaz Giovana, Krohn Muriel Schiling, Groehs Eduarda, Anjos André da Silva, Meireles R. Mariana
Proteins are essential in biological systems, acting in transport, catalysis, and immune defense processes. However, these biomolecules' structural and functional complexity makes teaching and understanding these topics challenging. To address this difficulty, this study aimed to develop tutorials that facilitate learning and teaching about proteins based on structural analysis and molecular visualization through the interactions of the antigen–antibody complex. Thus, the ChimeraX platform was chosen as the central tool due to its intuitive interface and features that allow the manipulation and visualization of three-dimensional molecules, such as proteins, DNA, and chemical compounds, in .pdb format. The software combines visual and analytical functions, covering from basic to advanced aspects, adapting to the user's level of knowledge. The study presented three practical tutorials: (i) presentation of the tool, (ii) focusing on immunology, and (iii) addressing aspects of biochemistry. These tutorials demonstrated how to use ChimeraX to explore the relationship between protein structure and function, highlighting topics such as molecular interactions and other relevant biochemical processes. In addition, the Tutorials 1 and 2 were validated through the application in a microbiology undergraduate class, followed by a questionnaire and CVI analysis, which confirmed their clarity, relevance, and applicability, reinforcing their role as effective resources for integrating bioinformatics into health-related courses. Thus, the study contributes to disseminating knowledge methods and tools that enable more dynamic and accessible learning through visual and interactive approaches.
{"title":"Chimera X Interface to Enhance Understanding in Biochemistry and Immunology","authors":"Dalpiaz Giovana, Krohn Muriel Schiling, Groehs Eduarda, Anjos André da Silva, Meireles R. Mariana","doi":"10.1002/bmb.70025","DOIUrl":"10.1002/bmb.70025","url":null,"abstract":"<p>Proteins are essential in biological systems, acting in transport, catalysis, and immune defense processes. However, these biomolecules' structural and functional complexity makes teaching and understanding these topics challenging. To address this difficulty, this study aimed to develop tutorials that facilitate learning and teaching about proteins based on structural analysis and molecular visualization through the interactions of the antigen–antibody complex. Thus, the ChimeraX platform was chosen as the central tool due to its intuitive interface and features that allow the manipulation and visualization of three-dimensional molecules, such as proteins, DNA, and chemical compounds, in .pdb format. The software combines visual and analytical functions, covering from basic to advanced aspects, adapting to the user's level of knowledge. The study presented three practical tutorials: (i) presentation of the tool, (ii) focusing on immunology, and (iii) addressing aspects of biochemistry. These tutorials demonstrated how to use ChimeraX to explore the relationship between protein structure and function, highlighting topics such as molecular interactions and other relevant biochemical processes. In addition, the Tutorials 1 and 2 were validated through the application in a microbiology undergraduate class, followed by a questionnaire and CVI analysis, which confirmed their clarity, relevance, and applicability, reinforcing their role as effective resources for integrating bioinformatics into health-related courses. Thus, the study contributes to disseminating knowledge methods and tools that enable more dynamic and accessible learning through visual and interactive approaches.</p>","PeriodicalId":8830,"journal":{"name":"Biochemistry and Molecular Biology Education","volume":"54 1","pages":"92-102"},"PeriodicalIF":0.9,"publicationDate":"2025-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12877970/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145511590","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"教育学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The ultimate aim of all higher education programs is to produce work-ready graduates who can enter a number of career paths. Bioscience graduates are well suited to a multitude of career paths such as research, education or industry. Designing an undergraduate bioscience program that can prepare learners for this multitude of career pathways can be a challenge. Curricula design is a substantive piece of work that is often given to subject specialists who are very familiar with biological science as a subject, but perhaps less well versed in the underpinning pedagogical principles of teaching, learning and assessment. Academics can be left to design curricula alongside their existing teaching, research and administrative duties which leaves little time for thorough research into the theory behind the design process, and how this can be conducted to ensure a focus on employability as well as scientific proficiency. This article aims to provide a “how to” guide for academics who are engaged in designing or redesigning biological science curricula, and is based on experiences of redesigning a Biomedical Science undergraduate degree. It provides an overview of the key considerations to make in the overarching structure of the program, the needs of learners, employers and accrediting bodies, the theory underpinning the comparative strengths and weaknesses of different learning delivery and assessment strategies, and how these can all coalesce to provide a biological curriculum that encourages and enhances diverse postgraduation careers.
{"title":"An Academics Guide to Approaching Bioscience Curricula Design: Stakeholders, Material and Assessment Choice, and Employability","authors":"Kirsten Riches-Suman, Simon Tweddell","doi":"10.1002/bmb.70023","DOIUrl":"10.1002/bmb.70023","url":null,"abstract":"<p>The ultimate aim of all higher education programs is to produce work-ready graduates who can enter a number of career paths. Bioscience graduates are well suited to a multitude of career paths such as research, education or industry. Designing an undergraduate bioscience program that can prepare learners for this multitude of career pathways can be a challenge. Curricula design is a substantive piece of work that is often given to subject specialists who are very familiar with biological science as a subject, but perhaps less well versed in the underpinning pedagogical principles of teaching, learning and assessment. Academics can be left to design curricula alongside their existing teaching, research and administrative duties which leaves little time for thorough research into the theory behind the design process, and how this can be conducted to ensure a focus on employability as well as scientific proficiency. This article aims to provide a “how to” guide for academics who are engaged in designing or redesigning biological science curricula, and is based on experiences of redesigning a Biomedical Science undergraduate degree. It provides an overview of the key considerations to make in the overarching structure of the program, the needs of learners, employers and accrediting bodies, the theory underpinning the comparative strengths and weaknesses of different learning delivery and assessment strategies, and how these can all coalesce to provide a biological curriculum that encourages and enhances diverse postgraduation careers.</p>","PeriodicalId":8830,"journal":{"name":"Biochemistry and Molecular Biology Education","volume":"54 1","pages":"18-28"},"PeriodicalIF":0.9,"publicationDate":"2025-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12877988/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145501900","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"教育学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}