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Biogeographic history, egg colouration, and habitat selection in Turdus thrushes (Aves: Turdidae). 图尔杜画眉的生物地理历史、蛋的颜色和栖息地选择(Aves:Turdidae)。
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2023-12-01 Epub Date: 2023-11-02 DOI: 10.1007/s42977-023-00191-2
Jenő Nagy, Andrew G Fulmer, Viktor Löki, Francisco Ruiz-Raya, Mark E Hauber

Despite broad interest and recent experimentation, there is no single ecological model accounting for the adaptive significance of the diversity of avian eggshell colouration. The often blue-green eggs of Turdus thrushes are a charismatic example of this, having long captured cultural and scientific attention. Although the biology and evolutionary history of "true" thrushes is well understood, little is known about correlated evolution between shifts in habitat and eggshell pigmentation, and how these shifts map with Turdus biogeography. We applied phylogenetic comparative methods to assess the evolutionary timing of divergence and variation of life history traits and eggshell colouration and maculation presence in the genus. We found that eggshell colour diversified independently on several occasions in the past 11 million years, with much of the variation occurring within the last 4 million years. The majority of Turdus species lay blue-green eggs and also tend to be sedentary and forest-dwelling. Diet generalist species and species which have transitioned to a forest habitat are more likely to lay white eggs (10% of studied species). In turn, lineages in any habitat were more likely to transition to blue-green eggs. We found that variation in egg colour is increased in some clades, of which two lineages radiated in South America and the East Palearctic, in the past 2-4 million years. These findings provide support for the hypothesis that white eggs are more conspicuous to predators in open environments and that multiple, non-mutually exclusive constraints operate on the adaptive function of avian eggshell colour.

尽管有广泛的兴趣和最近的实验,但没有一个单一的生态模型可以解释鸟类蛋壳颜色多样性的适应性意义。Turdus画眉鸟的蓝绿色蛋就是一个很有魅力的例子,长期以来一直受到文化和科学的关注。尽管人们对“真正的”画眉鸟的生物学和进化史有很好的了解,但对栖息地变化和蛋壳色素沉着之间的相关进化,以及这些变化如何与图尔杜斯生物地理学相映射,却知之甚少。我们应用系统发育比较方法来评估该属生活史特征以及蛋壳颜色和斑点存在的分化和变异的进化时间。我们发现,在过去的1100万年中,蛋壳的颜色多次独立多样化,其中大部分变化发生在过去的400万年内。大多数Turdus物种产蓝绿色蛋,也倾向于定居和居住在森林中。饮食多面手物种和已过渡到森林栖息地的物种更有可能产下白蛋(研究物种的10%)。反过来,任何栖息地的谱系都更有可能转变为蓝绿色蛋。我们发现,在过去的200-400万年中,一些分支的蛋色变化增加,其中两个谱系分布在南美洲和东北极。这些发现支持了这样一种假设,即在开放环境中,白蛋对捕食者更为明显,并且多种非互斥约束对鸟类蛋壳颜色的适应功能起作用。
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引用次数: 0
Conservation status of the blind mole rat populations in Hungary (Rodentia: Spalacinae: Nannospalax) revisited. 匈牙利盲鼹鼠种群(啮齿目:Spalacinae:Nannospalax)的保护现状再探。
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2023-12-01 Epub Date: 2024-02-16 DOI: 10.1007/s42977-024-00204-8
Gábor Csorba, Orsolya Moldován, Viktor Schneider, Attila Németh

Regular reviews of long-term research and conservation programs are useful sources of information for future directions in science and for the assessment of current conservation status of taxa. In this paper, we compiled all available data from the last 10 years related to Hungarian blind mole rat populations and assessed this information according to the following main themes: systematics, distribution and threats, and conservation actions. Based on the most recent information, national and global risk assessments are provided for the three species of Nannospalax (N. montanosyrmiensis, N. hungaricus and N. syrmiensis), currently accepted as part of the Hungarian fauna.

对长期研究和保护计划的定期审查是未来科学发展方向和评估类群保护现状的有用信息来源。在本文中,我们汇编了过去 10 年有关匈牙利盲鼹鼠种群的所有可用数据,并根据以下主题对这些信息进行了评估:系统学、分布与威胁以及保护行动。根据最新信息,对目前被视为匈牙利动物群一部分的三个 Nannospalax 物种(N. montanosyrmiensis、N. hungaricus 和 N. syrmiensis)进行了国家和全球风险评估。
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引用次数: 0
European Tuber melanosporum plantations: adaptation status in Hungary, mycorrhizal level, and first ascocarp detection in two truffle orchards. 欧洲黑孢块菌种植园:匈牙利的适应状况、菌根水平和两个松露园的首次子囊检测。
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2023-12-01 Epub Date: 2023-11-02 DOI: 10.1007/s42977-023-00189-w
Akale Assamere Habtemariam, Péter Cseh, Zoltán Bratek

Tuber melanosporum is one of the most economically important truffle species. Besides harvesting from its natural habitats, this truffle can also be extensively grown through artificial cultivation. However, the natural habitat of T. melanosporum has drastically declined, and the demand for the truffle in society is rapidly increasing. Therefore, enhancing production in truffle orchards by seeking new places for the establishment and regularly monitoring its adaptability might be an effective method for ensuring the sustainable productivity of the species. As a truffle science, recent information is important to further success in the growth of this truffle species. This study reports mycorrhization level and ascocarp production in two truffle plantations in Hungary. The estimated mycorrhization levels of the host plants were 43.36% in Biatorbágy and 42.93% in Jászszentandrás plantations. In March 2020, the 6-year-old and 18-year-old T. melanosporum plantations yielded around 100 g and 980 g of ascocarps, respectively. In general, adaptation of mycorrhizal seedlings in Hungary may become more effective as present management practices improve.

黑孢块菌是经济上最重要的松露品种之一。除了从自然栖息地采集,这种松露还可以通过人工栽培广泛种植。然而,黑孢T.melanosporum的自然栖息地已经急剧减少,社会对松露的需求正在迅速增加。因此,通过寻找新的种植地并定期监测其适应性来提高松露园的产量,可能是确保该物种可持续生产力的有效方法。作为一门松露科学,最近的信息对这种松露物种的进一步成功至关重要。本研究报告了匈牙利两个松露种植园的菌根水平和子囊产量。据估计,寄主植物的菌根水平在Biatorbágy为43.36%,在Jászszentandrás种植园为42.93%。2020年3月,6岁和18岁的黑孢T.melanosporum种植园分别产下约100克和980克子囊果。总的来说,随着目前管理实践的改进,匈牙利菌根幼苗的适应可能会变得更加有效。
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引用次数: 0
mkLTG: a command-line tool for taxonomic assignment of metabarcoding sequences using variable identity thresholds. mkLTG:使用可变同一性阈值对元条码序列进行分类分配的命令行工具。
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2023-12-01 Epub Date: 2024-02-01 DOI: 10.1007/s42977-024-00201-x
Emese Meglécz

Metabarcoding is now a widely used method for biodiversity studies. Taxonomic assignment of environmental sequences is one of the key steps of metabarcoding. Assignments based on lowest common ancestor (LCA) method generally rely on fixed arbitrary thresholds, and this is generally not well adapted for assignment of taxonomically diverse groups with variable coverage in reference databases. The mkLTG is a LCA-based method that uses a series of percentage of identity thresholds starting from stringent parameters and decreasing it if necessary. All parameters can be set separately for each percentage of identity threshold, which makes this tool adaptable for different databases, genetic markers and diverse taxonomic groups. The optimization step was included using the COI marker and a comprehensive, non-redundant database. The mkLTG tool is a command-line application with few dependencies that runs in all operating systems, therefore, it is easy to include into complex pipelines. All scripts are freely available including the benchmarking at https://github.com/meglecz/mkLTG .

元条码是目前生物多样性研究中广泛使用的一种方法。环境序列的分类分配是元标码的关键步骤之一。基于最低共同祖先(LCA)方法的赋值一般依赖于固定的任意阈值,而这种方法一般不太适合赋值参考数据库中覆盖率不一的分类学多样性群体。mkLTG 是一种基于 LCA 的方法,它使用一系列同一性百分比阈值,从严格的参数开始,必要时降低阈值。每个同一性百分比阈值的所有参数都可单独设置,这使得该工具可适用于不同的数据库、遗传标记和不同的分类群体。优化步骤包括使用 COI 标记和一个全面的非冗余数据库。mkLTG 工具是一个命令行应用程序,依赖性极少,可在所有操作系统中运行,因此很容易纳入复杂的管道中。包括基准测试在内的所有脚本均可在 https://github.com/meglecz/mkLTG 免费获取。
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引用次数: 0
Evolutionary significant units (ESUs) and functional conservation units (FCUs) in the Phengaris (Maculinea) nausithous populations of East-Central Europe. 东欧-中欧鲮鱼种群的重要进化单元(ESUs)和功能保护单元(FCUs)。
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2023-12-01 Epub Date: 2024-03-11 DOI: 10.1007/s42977-024-00211-9
Katalin Pecsenye, Judit Bereczki, Amáta Hollós, Zoltán Varga

The aim of this study was to analyse the level and structure of genetic and morphometric variation in the East-Central European populations of Phengaris (Maculinea) nausithous. On the basis of the life cycle of the species, we expected a low level of variation within the populations coupled with a relatively high level of differentiation among them. We also assumed that the differentiation among the populations has a regional pattern. In order to confirm these assumptions, we collected population samples from two regions within the Carpathian Basin (western Transdanubia and Transylvania) and from a region east of the Carpathian Mountains (Bukovina). The level of enzyme polymorphism and the amount of morphometric variation were investigated in the sampled populations. As the western (Transdanubia) and the eastern populations (Transylvania plus Bukovina) were suggested to belong to different subspecies (Rákosy et al. in Nota Lepidopterol 33:31-37, 2010), our working hypothesis was that these two groups of populations belong to different evolutionary significant units (ESUs). The results of all genetic analyses (PCA, Bayesian-clustering analysis and especially the UPGMA dendrogram) confirmed our assumption. The level of differentiation was higher between the western and eastern populations resulting in two monophyletic lineages of Phengaris (Maculinea) nausithous in East-Central Europe. This result suggests that these lineages can be considered as two different ESUs.

本研究的目的是分析东欧-中欧褐斑蝶(Phengaris (Maculinea) nausithous)种群的遗传和形态变异水平与结构。根据该物种的生命周期,我们预计种群内部的变异水平较低,而种群之间的分化水平相对较高。我们还假设种群间的分化具有区域性。为了证实这些假设,我们从喀尔巴阡山脉盆地内的两个地区(特兰斯达努比亚西部和特兰西瓦尼亚)以及喀尔巴阡山脉以东的一个地区(布科维纳)采集了种群样本。我们对取样种群的酶多态性水平和形态变异量进行了调查。由于西部种群(特兰西瓦尼亚)和东部种群(特兰西瓦尼亚加布科维纳)被认为属于不同的亚种(Rákosy 等人,载于 Nota Lepidopterol 33:31-37, 2010),我们的工作假设是这两组种群属于不同的重要进化单元(ESUs)。所有遗传分析(PCA、贝叶斯聚类分析,尤其是 UPGMA 树枝图)的结果都证实了我们的假设。西部和东部种群之间的分化程度较高,从而在东欧-中欧形成了两个单系的Phengaris (Maculinea) nausithous品系。这一结果表明,这些品系可被视为两个不同的 ESU。
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引用次数: 0
The role of connection with nature in empirical studies with physiological measurements: a systematic literature review. 与自然的联系在生理测量实证研究中的作用:一项系统的文献综述。
IF 2.1 4区 生物学 Q3 BIOLOGY Pub Date : 2023-09-01 Epub Date: 2023-10-18 DOI: 10.1007/s42977-023-00185-0
Vera Gál, Zsuzsanna Dömötör

It is well described that exposure to nature reduces physiological stress, and connectedness to nature can have a moderating effect. However, few studies have so far examined the construction of the connection with nature in relation to physiological processes. In this systematic review, we collected studies that used a physiological measure and included a scale to measure connectedness to nature. Our aim was to assess the role of nature relatedness at the level of physiological processes and to summarize the results published so far. Our review was conducted according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement. A literature search was conducted in 3 different databases (PubMed, ScienceDirect and Google Scholar). As keywords, we used all the different questionnaires that measure connectedness to nature, combined with terms related to physiological measures. After final screening, 28 articles met the inclusion criteria for the review. The studies were very diverse in terms of purpose, intervention and methods, so narrative synthesis was conducted without measures of effect. We found evidence for a mediating effect of nature connectedness on the associations between nature exposure and cognitive function, brain activity, blood pressure, cortisol level and mental health. Studies investigating nature relatedness as state-like characteristics have shown that exposure to nature increases the level of connection to nature. Eye-tracking studies have confirmed that this measurement method can be used to investigate nature relatedness at a physiological level, which could be a useful complement to self-report questionnaires in future studies.

众所周知,接触大自然可以减轻生理压力,与大自然的联系可以起到调节作用。然而,到目前为止,很少有研究考察生理过程中与自然联系的构建。在这篇系统综述中,我们收集了使用生理测量的研究,并包括一个测量与自然联系的量表。我们的目的是评估自然相关性在生理过程水平上的作用,并总结迄今为止发表的结果。我们的审查是根据系统评价和荟萃分析的首选报告项目(PRISMA)声明进行的。在3个不同的数据库(PubMed、ScienceDirect和Google Scholar)中进行文献检索。作为关键词,我们使用了所有不同的问卷来衡量与自然的联系,并结合了与生理测量相关的术语。经过最终筛选,28篇文章符合审查的纳入标准。这些研究在目的、干预和方法方面非常多样化,因此叙事综合是在没有效果衡量的情况下进行的。我们发现了自然联系对自然暴露与认知功能、大脑活动、血压、皮质醇水平和心理健康之间的关系具有中介作用的证据。研究将自然相关性作为类似状态的特征表明,接触自然会增加与自然的联系水平。眼动追踪研究证实,这种测量方法可以用于在生理水平上调查自然相关性,这可能是对未来研究中自我报告问卷的有用补充。
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引用次数: 0
How do you do the things that you do? Ethological approach to the description of robot behaviour. 你是如何做你所做的事情的?描述机器人行为的人种学方法。
IF 2.1 4区 生物学 Q3 BIOLOGY Pub Date : 2023-09-01 Epub Date: 2023-10-09 DOI: 10.1007/s42977-023-00178-z
Beáta Korcsok, Péter Korondi

The detailed description of behaviour of the interacting parties is becoming more and more important in human-robot interaction (HRI), especially in social robotics (SR). With the rise in the number of publications, there is a substantial need for the objective and comprehensive description of implemented robot behaviours to ensure comparability and reproducibility of the studies. Ethograms and the meticulous analysis of behaviour was introduced long ago in animal behaviour research (cf. ethology). The adoption of this method in SR and HRI can ensure the desired clarity over robot behaviours, while also providing added benefits during robot development, behaviour modelling and analysis of HRI experiments. We provide an overview of the possible uses and advantages of ethograms in HRI, and propose a general framework for describing behaviour which can be adapted to the requirements of specific studies.

在人机交互中,尤其是在社交机器人中,对交互方行为的详细描述变得越来越重要。随着出版物数量的增加,迫切需要对实施的机器人行为进行客观全面的描述,以确保研究的可比性和再现性。动物行为学和对行为的细致分析早在动物行为研究中就被引入(参见行为学)。在SR和HRI中采用这种方法可以确保机器人行为的清晰性,同时在机器人开发、行为建模和HRI实验分析过程中提供额外的好处。我们概述了行为图在HRI中的可能用途和优势,并提出了一个描述行为的通用框架,该框架可以适应特定研究的要求。
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引用次数: 0
Fight against cold: photosynthetic and antioxidant responses of different bell pepper cultivars (Capsicum annuum L.) to cold stress. 抗寒:不同甜椒品种(辣椒)对冷胁迫的光合和抗氧化反应。
IF 2.1 4区 生物学 Q3 BIOLOGY Pub Date : 2023-09-01 Epub Date: 2023-09-27 DOI: 10.1007/s42977-023-00182-3
A Rácz, Gy Czégény, D Kutyáncsánin, N Nagy, É Hideg, K Csepregi

The special metabolites of bell pepper (Capsicum annuum L.) leaves can protect the plant under possibly damaging circumstances, such as high light, UV, unfavorable temperatures, or other environmental effects. In this study, we examined the cold stress tolerance of three different Hungarian pepper varieties (Darina, Édesalma, Rekord), focusing on the antioxidant and photosynthetic responses. The plants were developed in growth chambers under optimal temperature conditions (day/night 25 °C/20 °C) until the leaves on the fourth node became fully developed, then half of the plants received a cold treatment (day/night 15 °C/10 °C). Via a detailed pigment analysis, the PS II chlorophyll fluorescence responses, gas exchange parameters and total antioxidant capacities, leaf acclimation to low temperatures has been characterized. Our results display some of the developing physiological and antioxidant properties, which are among the main factors in monitoring the damaging effects of cold temperatures. Nevertheless, despite their differences, the tested pepper varieties did not show different cold responses.

甜椒(Capsicum annuum L.)叶片的特殊代谢产物可以在可能的破坏性环境下保护植物,如强光、紫外线、不利温度或其他环境影响。在本研究中,我们检测了三个不同的匈牙利辣椒品种(Darina、Édesama、Rekord)的冷胁迫耐受性,重点研究了它们的抗氧化和光合反应。植物在最佳温度条件下(昼夜25°C/20°C)的生长室中发育,直到第四节的叶片完全发育,然后一半的植物接受冷处理(昼夜15°C/10°C)。通过详细的色素分析,表征了PS II叶绿素荧光响应、气体交换参数和总抗氧化能力、叶片对低温的适应性。我们的研究结果显示了一些正在发展的生理和抗氧化特性,这是监测低温破坏影响的主要因素之一。尽管如此,尽管它们存在差异,但测试的辣椒品种并没有表现出不同的冷反应。
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引用次数: 0
The bZIP-type transcription factors NapA and RsmA modulate the volumetric ratio and the relative superoxide ratio of mitochondria in Aspergillus nidulans. bZIP型转录因子NapA和RsmA调节巢状曲霉线粒体的体积比和相对超氧化物比。
IF 2.1 4区 生物学 Q3 BIOLOGY Pub Date : 2023-09-01 Epub Date: 2023-10-09 DOI: 10.1007/s42977-023-00184-1
Bernadett Bákány, Réka Antal, Péter Szentesi, Tamás Emri, Éva Leiter, László Csernoch, Nancy P Keller, István Pócsi, Beatrix Dienes

Basic leucine zipper (bZIP) transcription factors are crucial components of differentiation, cellular homeostasis and the environmental stress defense of eukaryotes. In this work, we further studied the consequence of gene deletion and overexpression of two bZIP transcription factors, NapA and RsmA, on superoxide production, mitochondrial morphology and hyphal diameter of Aspergillus nidulans. We have found that reactive oxygen species production was influenced by both gene deletion and overexpression of napA under tert-butylhydroperoxide (tBOOH) elicited oxidative stress. Furthermore, gene expression of napA negatively correlated with mitochondrial volumetric ratio as well as sterigmatocystin production of A. nidulans. High rsmA expression was accompanied with elevated relative superoxide ratio in the second hyphal compartment. A negative correlation between the expression of rsmA and catalase enzyme activity or mitochondrial volumetric ratio was also confirmed by statistical analysis. Hyphal diameter was independent on either rsmA and napA expression as well as 0.2 mM tBOOH treatment.

碱性亮氨酸拉链(bZIP)转录因子是真核生物分化、细胞稳态和环境应激防御的重要组成部分。在这项工作中,我们进一步研究了NapA和RsmA两种bZIP转录因子的基因缺失和过表达对巢曲霉超氧化物产生、线粒体形态和菌丝直径的影响。我们发现,在叔丁基氢过氧化物(tBOOH)引发的氧化应激下,napA的基因缺失和过表达都会影响活性氧的产生。此外,napA的基因表达与巢状芽孢杆菌的线粒体体积比以及空间色素的产生呈负相关。rsmA的高表达伴随着第二菌丝室中相对超氧化物比率的升高。rsmA的表达与过氧化氢酶活性或线粒体体积比之间的负相关性也通过统计分析得到证实。菌丝直径独立于rsmA和napA的表达以及0.2mM tBOOH处理。
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引用次数: 0
Peppers and their constituents against obesity. 辣椒及其成分对抗肥胖。
IF 2.1 4区 生物学 Q3 BIOLOGY Pub Date : 2023-09-01 Epub Date: 2023-07-26 DOI: 10.1007/s42977-023-00174-3
Alexander V Sirotkin

Phytotherapy can be an efficient tool for prevention and treatment of disorders including obesity. The purpose of this narrative review is to summarize the available knowledge concerning the positive effects of peppers (Capsicum spp.) and their alkaloid capsaicin on human health, in particular on fat and obesity. Search for literature was performed in Medline/Pubmed, Web of Science and SCOPUS databases between the year 2000 and 2023. Words used to search were pepper, Capsicum, capsaicin, review, obesity, fat, weight loss and mechanisms. The available data demonstrate that both pepper extract and capsaicin can positively influence human health and treat several disorders. Moreover, they can reduce fat storage affecting brain centres responsible for the sensation of hunger, nutrient uptake by gastrointestinal tract, state of adipocytes, increase in carbohydrate and fat oxidation, metabolism and thermogenesis and other mechanisms. Therefore, despite some possible limitations, these substances could be useful for treatment of obesity.

植物疗法可以成为预防和治疗包括肥胖在内的疾病的有效工具。本叙述性综述的目的是总结有关辣椒及其生物碱辣椒素对人类健康,特别是对脂肪和肥胖的积极影响的现有知识。2000年至2023年间,在Medline/Pubmed、Web of Science和SCOPUS数据库中进行了文献检索。用于搜索的单词有辣椒、辣椒、辣椒素、综述、肥胖、脂肪、减肥和机制。现有数据表明,辣椒提取物和辣椒素都能对人类健康产生积极影响,并能治疗多种疾病。此外,它们可以减少影响大脑中心的脂肪储存,这些大脑中心负责饥饿感、胃肠道的营养吸收、脂肪细胞的状态、碳水化合物和脂肪氧化的增加、代谢和产热以及其他机制。因此,尽管存在一些可能的局限性,但这些物质可能对治疗肥胖有用。
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引用次数: 1
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