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Genetic Variability Assessment in Irrigated Rice ( Oryza sativa and Oryza glaberrima ) by PCR-SSR in Mali 马里灌溉水稻(Oryza sativa和Oryza glaberrima)遗传变异的PCR-SSR评价
Pub Date : 2018-05-22 DOI: 10.11648/j.ijgg.20180602.11
Sognan Dao, Halimatou Timbine, O. Goita, D. Traoré
Rice species (Oryza sativa, L. and Oryza glaberrima, Steud) provide 20% energy of world’s food. Knowledge of genetic variability is important to remove duplicate materials for gene bank management and conservation. In this study, 59 microsatellite markers were used to assess the genetic diversity of 54 intraspecific (Oryza sativa) and interspecific (Oryza sativa X Oryza glaberrima) irrigated rice varieties by PCR-SSR. A total of 250 alleles were detected with an average of 4.24 alleles per SSR. Genetic diversity was ranged from 0.0713 (RM333, RM3744) to 0.8937 (RM251) to with an average of 0.4325. Polymorphism Information Content (PIC) varied from 0.0688 (RM333, RM3744) to 0.8854 (RM251) with an average of 0.3940. Rice genotypes were shared between five Groups based on their similarity with majority of them (64.81%) under Group V. Variety SK 7-8 within Group III was highly dissimilar to other varieties. Malian varieties were shared out between Groups II, III, VI and V. Strong genetic variability was observed within cluster V2 of Group V among the most cultivated and appreciated rice varieties such as Kogoni 91-1, Adny11 and BG90-2. Allelic variability observed among rice varieties could help breeding programs to identify cultivars with good agronomic traits for crop improvement.
水稻品种(Oryza sativa, L.和Oryza glaberrima, Steud)提供了世界粮食能量的20%。了解遗传变异对消除重复物质对基因库的管理和保护具有重要意义。本研究利用59个微卫星标记,利用PCR-SSR技术对54个灌水水稻品种种内(Oryza sativa)和种间(Oryza sativa X Oryza glaberrima)的遗传多样性进行了评价。共检测到250个等位基因,平均每个SSR检测到4.24个等位基因。遗传多样性范围为0.0713 (RM333、RM3744) ~ 0.8937 (RM251),平均为0.4325。多态性信息含量(PIC)变化范围为0.0688 (RM333, RM3744) ~ 0.8854 (RM251),平均为0.3940。水稻基因型在5个类群之间具有相似性,类群内的大部分基因型(64.81%)与其他品种差异较大。马里品种分布在类群II、III、VI和V之间。在类群V的类群V2内,最受栽培和欣赏的水稻品种如Kogoni 91-1、Adny11和BG90-2之间观察到很强的遗传变异。在水稻品种中观察到的等位基因变异可以帮助育种计划确定具有良好农艺性状的品种,以进行作物改良。
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引用次数: 2
A Systematic Genetic Assessment of ARFGEF2 Mutations in Periventricular Heterotopia 心室周围异位ARFGEF2突变的系统遗传评估
Pub Date : 2018-05-05 DOI: 10.11648/J.IJGG.20180601.13
L. M. A. Neghery, R. Kenana, Albandary Al Bakheet, Rawan Al Mass, Faten Al Mutairi, Maysoon Al Sagob, A. Qari, Rozeena Huma, D. Çolak, M. Daghestani, N. Kaya, Moeen Al‐ Sayed
Mutations in ADP-ribosylation factor guanine nucleotide-exchange factor 2 (ARFGEF2) lead to autosomal recessive periventricular heterotopia (PH). To date, 11 mutations, (six missense mutations, one splicing mutation, one small deletion, two small insertions, and one small deletion/insertion) have been reported. Assessing ARFGEF2 mutations will provide a holistic overview of PH. This retrospective study was conducted in 2016 at King Faisal Specialist Hospital and Research Center. For the index patient, magnetic resonance imaging studies revealed a symmetrical focal hyperintensity involving the putamen bilaterally and the inner aspect of the globus pallidus. After family members were genotyped, an autozygosity analysis was performed, followed by exome sequencing of the index patient; A comprehensive filtering approach based on the loss of heterozygosity (LOH) was used to identify variants in phenotypically relevant genes. We report a consanguineous family with two affected individuals, a boy and a girl, with a history of microcephaly, global developmental delay, intellectual disability, myoclonic seizure, and dystonia. The patients carried a novel nonsense mutation (c.3974G>A, p. Trp1325*) in the Armadillo-type fold domain of ARFGEF2. These findings extend our understanding of the phenotype–genotype correlations for ARFGEF2 mutations.
adp核糖基化因子鸟嘌呤核苷酸交换因子2 (ARFGEF2)突变导致常染色体隐性心室周围异位(PH)。迄今为止,已报道了11个突变(6个错义突变,1个剪接突变,1个小缺失,2个小插入和1个小缺失/插入)。评估ARFGEF2突变将提供ph的整体概况。这项回顾性研究于2016年在费萨尔国王专科医院和研究中心进行。对于指数患者,磁共振成像研究显示对称的局灶性高强度涉及双侧壳核和苍白球内侧。在对家庭成员进行基因分型后,进行自合子分析,然后对索引患者进行外显子组测序;基于杂合性损失(LOH)的综合过滤方法被用于鉴定表型相关基因的变异。我们报告了一个近亲家庭,有两个患病个体,一男一女,有小头畸形、整体发育迟缓、智力残疾、肌阵挛性发作和肌张力障碍的病史。患者在ARFGEF2的Armadillo-type fold domain中携带一个新的无义突变(c.3974G> a, p. Trp1325*)。这些发现扩展了我们对ARFGEF2突变的表型-基因型相关性的理解。
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引用次数: 0
A Small Pure 3q25.1 Duplication Associated with Multiple Cerebral Organizational Defects 一个小的纯3q25.1重复与多种大脑组织缺陷相关
Pub Date : 2018-05-05 DOI: 10.11648/j.ijgg.20180601.14
Jesus David Sendoya Vargas, Divya Periasamy, F. Sánchez, Maria Alejandra Benavides Fierro, Ingrid Carolina Duran Palacios, R. Sidlow, Henry Ostos Alfonso
Duplications of the long arm of chromosome 3 most frequently occur in the context of other chromosomal copy number variations. Pure duplications of this region are exceedingly rare, varying widely in size and clinical presentation. Presented below is a case of a small pure duplication of the long arm of chromosome 3q25.1 associated with marked cerebral organization defects and the possible genotype/phenotype correlation between the two.
3号染色体长臂的重复最常发生在其他染色体拷贝数变异的背景下。该区域的纯粹重复极为罕见,在大小和临床表现上差异很大。下面是一个与明显的大脑组织缺陷相关的染色体3q25.1长臂小的纯重复的病例,以及两者之间可能的基因型/表型相关性。
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引用次数: 0
GENETIC VARIABILITY AND CHARACTER ASSOCIATION IN SOYBEAN GERMPLASM FOR PRE-HARVEST SPROUTING TOLERANCE AND ASSOCIATED TRAITS 大豆种质收获前发芽耐受性及相关性状的遗传变异与性状关联
Pub Date : 2018-04-30 DOI: 10.9735/0975-2862.10.4.390-393
A. Sharma, M. Sarma, N. Ramchiary
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引用次数: 1
Use of expressed sequence tags-derived simple sequence repeat (SSR) markers for population studies of released and elite sweet potato 表达序列标签衍生的简单序列重复(SSR)标记在甘薯释放和优质群体研究中的应用
Pub Date : 2018-04-30 DOI: 10.5897/IJGMB2017.0159
M. Quain, K. Adofo, D. Appiah-Kubi, R. Prempeh, J. Asafu-Agyei, Belinda Akomeah, Harrison Kwame Dapaah
Development of improved varieties of sweet potato to meet specific end users in the sub-Saharan African region has the potential of transforming the crop’s market, consumption and health benefits. Molecular biology techniques such as fingerprinting are key to crop improvement, and critical for numerous genetic studies. This study, carried out in Ghana, seeks to determine genetic relatedness among two populations of sweet potato (released and elite), as well as to identify polymorphic and informative markers for diversity studies. Twenty expressed sequence tags-simple sequence repeat (EST-SSR) markers were used for analysis of DNA assembled. A total of 169 alleles were obtained, with an average of 8.5 alleles per locus. Pairwise genetic distance among genotypes ranged from 12 – 89. GenAlex v6.4 analysis showed that a higher genetic diversity existed within elite genotypes than the released lines. Results analyzed using Popgene version 1.31 software indicated that on the basis of both populations studied, EST-SSR markers utilized were very polymorphic (95%) and showed genetic diversity (I =0.888, He= 0.548) suggesting high heterozygosity in the collected varieties. The overall Fit (0.372%) and Fis (0.088%) suggest high genetic diversity within populations, and gene flow (1.95) indicate an exchange of genes between released sweet potatoes and elite ones. Ewens-Watterson test was conducted to test the neutrality. From the results obtained, markers CB329940, CB330477 and CB330936 showed high allelic polymorphism among varieties used and were recommended to be included in diversity studies.    Key words: Genetic diversity, genetic relatedness, expressed sequence tags-simple sequence repeat (EST-SSR), populations, released sweet potato, elite sweet potato.
开发甘薯改良品种以满足撒哈拉以南非洲区域的特定最终用户,有可能改变该作物的市场、消费和健康效益。分子生物学技术如指纹识别是作物改良的关键,也是许多遗传研究的关键。本研究在加纳进行,旨在确定两个甘薯种群(释放和精英)之间的遗传亲缘关系,并为多样性研究确定多态性和信息性标记。用20个表达序列标签-简单序列重复(EST-SSR)标记对组装的DNA进行分析。共获得169个等位基因,平均每个位点8.5个等位基因。基因型间的成对遗传距离在12 ~ 89之间。GenAlex v6.4分析表明,精英基因型的遗传多样性高于释放系。利用Popgene 1.31软件分析结果表明,所收集品种的EST-SSR标记多态性高(95%),遗传多样性高(I =0.888, He= 0.548),表明所收集品种具有较高的杂合性。总体Fit(0.372%)和Fis(0.088%)表明种群内具有较高的遗传多样性,基因流(1.95)表明释放红薯与优质红薯之间存在基因交换。采用Ewens-Watterson检验中立性。结果表明,CB329940、CB330477和CB330936标记在品种间表现出较高的等位基因多态性,建议纳入品种多样性研究。关键词:遗传多样性,遗传亲缘性,表达序列标签-简单序列重复(EST-SSR),群体,释放甘薯,精英甘薯
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引用次数: 2
PERFORMANCE OF STRAWBERRY F1 HYBRIDS AND PARENTS FOR FLOWERING, FRUITING AND VEGETATIVE PARAMETERS 草莓f1杂交种和亲本在开花、结果和营养参数方面的表现
Pub Date : 2018-04-30 DOI: 10.9735/0975-2862.10.4.387-389
Deepika, G. Sharma
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引用次数: 0
Genetic Confirmation of Mungbean Genotypes (Vigna Radiata L. Wilczek) Using Molecular Markers 绿豆(Vigna Radiata L. Wilczek)基因型的分子标记遗传鉴定
Pub Date : 2018-04-15 DOI: 10.9735/0975-2862.10.3.365-369
A. Nath, S. Maloo, Devendra Jain, S. Nath, A. Chakma, R. Verma
Molecular characterization is helpful in understanding the phylogenetic relationship among various germplasm to reveal the genetic diversity among the used parental genotypes. Among several efficient methods for revealing genetic variability within and among plant populations, one of the most widely applied method is marker analysis. RAPD and ISSR, markers are commonly used because they are quick, simple and environment non-sensitive enabling genetic diversity analysis in several types of plant material like natural populations, population in breeding programmes. Evaluation of genetic diversity would promote the efficient use of genetic variations, effective conservation and purity of the genotype to be determined as well as utilization of germplasm in crop improvement. The RAPD and ISSR data were evaluated to obtain a combined similarity matrix. The similarity coefficient values lay between 0.46–0.68. The RAPD and ISSR cluster tree analysis showed that the eight genotypes could be divided into 4 clusters. The genotype BM 4 was grouped in separate VI cluster. However, PDM 139 was grouped on cluster IIA. In the light of RAPD and ISSR study the parents of the cross BM 4 x PDM 139 were also noticed for their genetic diversity, having 53% dissimilarity and grouped into the separate clusters.
分子鉴定有助于了解不同种质间的系统发育关系,揭示亲本基因型间的遗传多样性。在揭示植物群体内和群体间遗传变异的几种有效方法中,应用最广泛的方法之一是标记分析。RAPD和ISSR是一种快速、简单、对环境不敏感的标记,可用于多种类型植物材料的遗传多样性分析,如自然群体、育种群体等。对遗传多样性进行评价,有利于遗传变异的有效利用,有利于待确定基因型的有效保存和纯度的提高,有利于种质资源在作物改良中的利用。对RAPD和ISSR数据进行评估,得到一个联合相似矩阵。相似系数值在0.46 ~ 0.68之间。RAPD和ISSR聚类树分析表明,8个基因型可分为4个聚类。bm4基因型被分为单独的VI聚类。然而,PDM 139被分组在集群IIA。根据RAPD和ISSR研究,bm4 × PDM 139亲本的遗传多样性也被注意到,有53%的差异,并被分为单独的集群。
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引用次数: 2
Estimates of Genetic Component of Variances and Genetic Ratios for Earliness and Yield Attributing Traits in Cucumber 黄瓜早熟和产量性状遗传方差和遗传比的估计
Pub Date : 2018-04-15 DOI: 10.9735/0975-2862.10.3.373-375
T. Bhutia, A. Munshi, A. K. Sureja, B. Gurung, S. Singh
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引用次数: 0
Phylogenetic Relationship among the Wild Rice (Oryza Nivara) and Intraspecies of Rice Genotypes Belonging to Chhattisgarh Revealed by Chloroplast Dna Regions psbA-trnH 利用叶绿体Dna psbA-trnH区揭示野生稻与恰蒂斯加尔邦稻种内基因型的系统发育关系
Pub Date : 2018-04-15 DOI: 10.9735/0975-2862.10.3.376-379
Jyoti Singh, Shubha Banerjee
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引用次数: 0
Role of Osteopontin in Bovines and their Association with Different Traits: A Review 骨桥蛋白在牛体内的作用及其与不同性状的关系
Pub Date : 2018-04-15 DOI: 10.9735/0975-2862.10.3.370-372
Suchit Kumar, A. Mukherjee, Sunil Kumar, A. Yadav, N. Kumar
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引用次数: 1
期刊
International journal of genetics and molecular biology
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