Biogeochemistry最新文献

Restoration of drained peatlands through rewetting has recently emerged as a prevailing strategy to mitigate excessive greenhouse gas emissions and re-establish the vital carbon sequestration capacity of peatlands. Rewetting can help to restore vegetation communities and biodiversity, while still allowing for extensive agricultural management such as paludiculture. Belowground processes governing carbon fluxes and greenhouse gas dynamics are mediated by a complex network of microbial communities and processes. Our understanding of this complexity and its multi-factorial controls in rewetted peatlands is limited. Here, we summarize the research regarding the role of soil microbial communities and functions in driving carbon and nutrient cycling in rewetted peatlands including the use of molecular biology techniques in understanding biogeochemical processes linked to greenhouse gas fluxes. We emphasize that rapidly advancing molecular biology approaches, such as high-throughput sequencing, are powerful tools helping to elucidate the dynamics of key biogeochemical processes when combined with isotope tracing and greenhouse gas measuring techniques. Insights gained from the gathered studies can help inform efficient monitoring practices for rewetted peatlands and the development of climate-smart restoration and management strategies.

Coastal marshes mitigate allochthonous nitrogen (N) inputs to adjacent marine habitat; however, their extent is declining rapidly. As a result, marsh restoration and construction have become a major foci of wetland management. Constructed marshes can quickly reach similar plant biomass to natural marshes, but biogeochemical functions like N removal and retention can take decades to reach functional equivalency, often due to lags in organic matter (OM) pools development in newly constructed marshes. We compared denitrification and dissimilatory nitrate reduction to ammonium (DNRA) rates in a 32 year-old constructed marsh and adjacent reference marsh in the Northern Gulf of Mexico. Marsh sediments packed into 3 mm “thin discs” were subjected to three OM quality treatments (no OM addition, labile OM, or recalcitrant OM) and two N treatments (ambient nitrate or elevated nitrate) during a 13 day incubation. We found that OM addition, rather than marsh type or nitrate treatment, was the most important driver of nitrate reduction, increasing both denitrification and DNRA and promoting DNRA over denitrification in both marshes. Fungal and bacterial biomass were higher in the natural marsh across treatments, but recalcitrant OM increased fungal biomass in the constructed marsh, suggesting OM-limitation of fungal growth. We found that constructed marshes are capable of similar denitrification and DNRA as natural marshes after 30 years, and that labile OM addition promotes N retention in both natural and constructed marshes.

Graphical Abstract

Conceptual figure highlighting the findings of this experiment. Under control treatment with no C addition (bottom panel), constructed and natural marshes have similar rates of both DNRA and denitrification. The natural marsh has higher fungal and bacterial biomass, while fungal biomass is not detectable in the constructed marsh. Under labile OM additions (upper left panel), rates of both DNRA and denitrification are increased and DNRA becomes favored over denitrification in both marshes. Recalcitrant OM additions (upper right) increase denitrification, but do not affect DNRA or % denitrification. The addition of recalcitrant OM also increases the detectability of fungal biomass in the constructed marsh.

Agricultural land use alters nitrate (NO₃^–) uptake dynamics in streams, but the specific mechanisms linking individual agricultural stressors to benthic and hyporheic uptake remain unclear. Using stream-side mesocosms and ¹⁵N-nitrate additions, we examined the individual and combined effects of fine sediment (FS) and augmented light and phosphorus levels (L&P) on benthic and hyporheic NO₃^– uptake rates. In absence of FS, L&P stimulated uptake of autotrophic and heterotrophic biofilms, leading to a 12- and 7-fold increase in the benthic and hyporheic compartments, respectively. Under ambient light and nutrient conditions, FS reduced by 3-fold benthic uptake, but effects were not significant. Conversely, in the hyporheic compartment, FS induced anoxic conditions, likely stimulating denitrification and causing a 14-fold increase in hyporheic uptake. When these stressors were combined, they did not interact in the benthic compartment. Conversely, in the hyporheic compartment they interacted antagonistically, with L&P diminishing the increase in uptake induced by FS. Our results indicate that the previously observed increase of whole-stream NO₃^– uptake in agricultural streams is attributable to nutrients and light stimulating benthic uptake, while fine sediment effects and the role of the hyporheic compartment to total uptake are modest. Moreover, the finding that stressor interactions vary with ecosystem compartments calls for a consideration of all compartments and their contribution to whole-system functioning in multiple stressor studies. We are beginning to understand how multiple interacting stressors affect stream functioning, but more mechanistic evidence is needed to disentangle whether additive or non-additive effects prevail in human-altered ecosystems.

Effects of global warming on soil organic carbon (C) can be investigated by comparing sites experiencing different temperatures. However, observations can be affected by covariance of temperature with other environmental properties. Here, we studied a thermal gradient in forest soils derived from volcanic materials on Mount Taranaki (New Zealand) to disentangle the effects of temperature and reactive minerals on soil organic C quantity and composition. We collected soils at four depths and four elevations with mean annual temperatures ranging from 7.3 to 10.5 °C. Soil C stocks were not significantly different across sites (average 162 MgC ha⁻¹ to 85 cm depth, P > .05). Neither aluminium (Al)-complexed C, nor mineral-associated C changed significantly (P > .05) with temperature. The molecular characterisation of soil organic matter showed that plant-derived C declined with increasing temperature, while microbial-processed C increased. Accompanying these changes, soil short-range order (SRO) constituents (including allophane) generally increased with temperature. Results from structural equation modelling revealed that, although a warmer temperature tended to accelerate soil organic C decomposition as inferred from molecular fingerprints, it also exerted a positive effect on soil total C presumably by enhancing plant C input. Despite a close linkage between mineral-associated C and soil organic C, the increased abundance of reactive minerals at 30–85 cm depth with temperature did not increase soil organic C concentration at that depth. We therefore propose that fresh C inputs, rather than reactive minerals, mediate soil C responses to temperature across the thermal gradient of volcanic soils under humid-temperate climatic conditions.

The German Bight in the southern North Sea receives nutrients, dissolved organic matter (DOM), and trace metals from rivers, porewater reflux, and porewater outwelling. We studied the marine, riverine, and porewater sources analyzing molecular transformations of solid-phase extracted (SPE) DOM in the German Bight. We applied a combination of ultrahigh-resolution mass spectrometry (FT-ICR-MS) with quantitative data of dissolved organic sulfur (DOS), dissolved black carbon (DBC), dissolved trace metals (Ba, Co, Gd, Mo, Mn, W), and nutrients (nitrite, nitrate, phosphate, silicate). While aromatic DOM and DBC mainly originated from the rivers, nitrogen-containing, more saturated DOM was enriched offshore suggesting greater contributions of marine (algal) sources. Except for dissolved Mo, rivers were the primary source of trace metals and nutrients. However, tidal flats contributed to dissolved nutrient (e.g., dissolved phosphate), trace metal and DOS inventories of the southern North Sea. The input of DOS from intertidal flats was identified by the molecular index derived from sulfidic porewaters (I_SuP), non-conservative behavior of elemental sulfur-to-carbon ratio and sulfur content of molecular formulae (from FT-ICR-MS). Dissolved Mn and Si were removed in the German Bight, likely due to precipitation as Mn(hydr)oxides and biological uptake, respectively. Preliminary estimates suggest that DOS from porewater outwelling is approximately four times higher than DOS discharged by the three main rivers in the region. Our study therefore highlights the need to consider porewater discharge in addition to riverine sources to comprehensively assess elemental budgets within the complex interplay and transformations of DOM, nutrients, and trace metals in coastal ecosystems.

Permafrost soils in the northern hemisphere are known to harbor large amounts of soil organic matter (SOM). Global climate warming endangers this stable soil organic carbon (SOC) pool by triggering permafrost thaw and deepening the active layer, while at the same time progressing soil formation. But depending, e.g., on ice content or drainage, conditions in the degraded permafrost can range from water-saturated/anoxic to dry/oxic, with concomitant shifts in SOM stabilizing mechanisms. In this field study in Interior Alaska, we investigated two sites featuring degraded permafrost, one water-saturated and the other well-drained, alongside a third site with intact permafrost. Soil aggregate- and density fractions highlighted that permafrost thaw promoted macroaggregate formation, amplified by the incorporation of particulate organic matter, in topsoils of both degradation sites, thus potentially counteracting a decrease in topsoil SOC induced by the permafrost thawing. However, the subsoils were found to store notably less SOC than the intact permafrost in all fractions of both degradation sites. Our investigations revealed up to net 75% smaller SOC storage in the upper 100 cm of degraded permafrost soils as compared to the intact one, predominantly related to the subsoils, while differences between soils of wet and dry degraded landscapes were minor. This study provides evidence that the consideration of different permafrost degradation landscapes and the employment of soil fractionation techniques is a useful combination to investigate soil development and SOM stabilization processes in this sensitive ecosystem.

Ponds are regarded as greenhouse gas (GHG) emission hot spots, but how hot are they? We examined this question by measuring methane (CH₄) and carbon dioxide (CO₂) fluxes in six forest and open land ponds on grasslands in Denmark during summer and winter. We used floating chambers with do-it-yourself sensors and automated headspace venting, allowing for 7404 hourly measurements. We found highly variable gas fluxes within ponds and between seasons and pond types. Ebullitive CH₄ fluxes were more variable than diffusive CH₄ fluxes. Ebullition was absent when total CH₄ fluxes were lowest (15 µmol m⁻² h⁻¹), dominant (> 90%) at the highest fluxes (> 400 µmol m⁻² h⁻¹), and increased with water temperature. In summer, a minor daily increase in diffusive fluxes was found on days with high wind speed, while CH₄ ebullition remained constant. CO₂ fluxes paralleled the day-night balance of photosynthesis and respiration. Mean CH₄ ebullition in open and forest ponds exceeded CH₄ diffusive fluxes 4.1 and 7.1-fold in summer (avg. 22.5 °C) and 2.3 and 2.5-fold in winter (9.6 °C), respectively. CO₂ emissions were higher on a molar basis than CH₄ emissions, both in summer and winter, while their annual global warming potentials were similar. Mean annual gas emissions from open and forest ponds (1092 and 2527 g CO₂e m⁻² y⁻¹) are naturally high due to extensive external input of dissolved CO₂ and organic carbon relative to pond area and volume.

Changing water regimes (e.g. drought) have unknown long-term consequences on the stability and resilience of soil microorganisms who determine much of the carbon and nitrogen exchange between the biosphere and atmosphere. Shifts in their activity could feedback into ongoing climate change. In this study, we explored soil drought effects on soil greenhouse gas (GHG; CO₂, CH₄, N₂O) fluxes over time in two sites: a boreal, coniferous forest in Finland (Hyytiälä) and a temperate, broadleaf forest in Austria (Rosalia). Topsoil moisture and topsoil temperature data were used to identify soil drought events, defined as when soil moisture is below the soil moisture at the permanent wilting point. Data over multiple years from automated GHG flux chambers installed on the forest floor were then analyzed using generalized additive models (GAM) to study whether GHG fluxes differed before and after drought events and whether there was an overall, multiyear temporal trend. Results showed CO₂ and N₂O emissions to be more affected by drought and long-term trends at Hyytiälä with increased CO₂ emission and decreased N₂O emissions both following drought and over the entire measurement period. CH₄ uptake increased at both sites both during non-drought periods and as an overall, multiyear trend and was predominantly affected by soil moisture dynamics. Multiyear trends also suggest an increase in soil temperature in the boreal forest and a decrease in soil moisture in the temperate forest. These findings underline forests as an important sink for CH₄, possibly with an increasing rate in a future climate.

Pockmarks are formed as a result of gas (methane) or/and groundwater outflow from the sea bottom. Methane, the second most important (after CO₂) greenhouse gas, has a significant impact on biogeochemical processes in the bottom sediments by affecting the cycling of some elements, e.g. C, Fe, and S. Active pockmarks may also lead to changes in water column conditions by causing nutrients release from sediments. In the present study, we have focused on the impact of biogeochemical processes in pockmarks (methanogenesis, anaerobic methane oxidation, and groundwater seepage) on the transformation of iron (Fe) and the mineral composition of the sediment. In pore water, concentrations of hydrogen sulfide, phosphate, ammonia, sulfate, chloride, dissolved inorganic carbon, iron, and methane were analyzed. In the sediment, Fe speciation was performed using sequential extraction. The mineral composition was determined using powder X-Ray diffraction and scanning electron microscopy. The results from two pockmarks (with active gas seepage and groundwater infiltration) and two reference stations in the southern Baltic Sea show that geochemical conditions in pockmark sediments are significantly different from those in the typical muddy sea bottom. Pore water in pockmarks is characterized by lower sulfate and higher dissolved carbon concentrations as compared to areas of the seafloor where such structures are absent. This is due to the outflow of groundwater, which was confirmed by lower chloride concentration. In addition, sulfate is used to oxidize methane diffusing from deeper layers. Sediments in pockmarks are enriched in Fe(II) carbonates and depleted in Fe(III) (oxy)hydroxides, resulting from the anaerobic oxidation of methane with Fe(III) (Fe-AOM). Ferrous iron produced in large quantities during Fe-AOM is precipitated with carbonates.