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The cadmium tolerance and bioaccumulation mechanism of Tetratostichococcus sp. P1: insight from transcriptomics analysis. 四叠球菌 P1 的镉耐受性和生物累积机制:转录组学分析的启示。
IF 4.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-02-20 DOI: 10.1080/21655979.2024.2314888
Eri Sahabudin, Shohei Kubo, Muhamad Ali Muhammad Yuzir, Nor'azizi Othman, Fazrena Nadia Md Akhir, Kengo Suzuki, Kohei Yoneda, Yoshiaki Maeda, Iwane Suzuki, Hirofumi Hara, Koji Iwamoto

Cadmium (Cd) has become a severe issue in relatively low concentration and attracts expert attention due to its toxicity, accumulation, and biomagnification in living organisms. Cd does not have a biological role and causes serious health issues. Therefore, Cd pollutants should be reduced and removed from the environment. Microalgae have great potential for Cd absorption for waste treatment since they are more environmentally friendly than existing treatment methods and have strong metal sorption selectivity. This study evaluated the tolerance and ability of the microalga Tetratostichococcus sp. P1 to remove Cd ions under acidic conditions and reveal mechanisms based on transcriptomics analysis. The results showed that Tetratostichococcus sp. P1 had a high Cd tolerance that survived under the presence of Cd up to 100 µM, and IC50, the half-maximal inhibitory concentration value, was 57.0 μM, calculated from the change in growth rate based on the chlorophyll content. Long-term Cd exposure affected the algal morphology and photosynthetic pigments of the alga. Tetratostichococcus sp. P1 removed Cd with a maximum uptake of 1.55 mg g-1 dry weight. Transcriptomic analysis revealed the upregulation of the expression of genes related to metal binding, such as metallothionein. Group A, Group B transporters and glutathione, were also found upregulated. While the downregulation of the genes were related to photosynthesis, mitochondria electron transport, ABC-2 transporter, polysaccharide metabolic process, and cell division. This research is the first study on heavy metal bioremediation using Tetratostichococcus sp. P1 and provides a new potential microalga strain for heavy metal removal in wastewater.[Figure: see text]Abbreviations:BP: Biological process; bZIP: Basic Leucine Zipper; CC: Cellular component; ccc1: Ca (II)-sensitive cross complementary 1; Cd: Cadmium; CDF: Cation diffusion facilitator; Chl: Chlorophyll; CTR: Cu TRansporter families; DAGs: Directed acyclic graphs; DEGs: Differentially expressed genes; DVR: Divinyl chlorophyllide, an 8-vinyl-reductase; FPN: FerroportinN; FTIR: Fourier transform infrared; FTR: Fe TRansporter; GO: Gene Ontology; IC50: Growth half maximal inhibitory concentration; ICP: Inductively coupled plasma; MF: molecular function; NRAMPs: Natural resistance-associated aacrophage proteins; OD: Optical density; RPKM: Reads Per Kilobase of Exon Per Million Reads Mapped; VIT1: Vacuolar iron transporter 1 families; ZIPs: Zrt-, Irt-like proteins.

由于镉(Cd)在生物体内的毒性、积累和生物放大作用,镉(Cd)在相对较低的浓度下已成为一个严重问题,并引起了专家的关注。镉没有生物作用,却会导致严重的健康问题。因此,应减少并清除环境中的镉污染物。由于微藻比现有的处理方法更环保,且具有很强的金属吸附选择性,因此微藻在吸收镉处理废物方面具有很大的潜力。本研究评估了微藻 Tetratostichococcus sp. P1 在酸性条件下去除镉离子的耐受性和能力,并基于转录组学分析揭示了其机制。结果表明,Tetratostichococcus sp. P1对镉的耐受性很强,在高达100 µM的镉存在下仍能存活,根据叶绿素含量计算的生长速率变化,IC50(半最大抑制浓度值)为57.0 μM。长期接触镉会影响藻类的形态和光合色素。P1 对镉的最大吸收量为 1.55 mg g-1 干重。转录组分析表明,与金属结合有关的基因(如金属硫蛋白)表达上调。还发现 A 组、B 组转运体和谷胱甘肽的表达也上调了。而与光合作用、线粒体电子传递、ABC-2 转运体、多糖代谢过程和细胞分裂有关的基因则出现下调。图:见正文]缩写:BP:生物过程;bZIP:碱性亮氨酸拉链;CC:细胞成分;ccc1:钙(II)敏感交叉互补 1;Cd:镉;CDF:CDF: 阳离子扩散促进因子; Chl:CTR: Cu TRansporter families; DAGs:有向无环图;DEGs:DVR:二乙烯基叶绿素,一种 8-乙烯基还原酶;FPN:FTIR:傅立叶变换红外光谱;FTR:铁转运体;GO:基因本体论;IC50:生长速度:ICP:电感耦合血浆;MF:分子功能;NRAMPs:与自然抗性相关的嗜酸性粒细胞蛋白;OD:光密度;RPKM:每百万读数映射的每千碱基外显子读数;VIT1:空泡铁转运体 1 家族;ZIPs:Zrt-,Irt-like 蛋白。
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引用次数: 0
Statement of Retraction: Mechanism of isosorbide dinitrate combined with exercise training rehabilitation to mobilize endothelial progenitor cells in patients with coronary heart disease. 撤回声明:二硝酸异山梨酯与运动训练康复相结合调动冠心病患者内皮祖细胞的机制。
IF 4.9 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-01-29 DOI: 10.1080/21655979.2024.2302652
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引用次数: 0
Statement of Retraction: The role of second generation sequencing technology and nanomedicine in the monitoring and treatment of lower extremity deep vein thrombosis susceptibility genes. 撤回声明:第二代测序技术和纳米医学在下肢深静脉血栓易感基因监测和治疗中的作用。
IF 4.9 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-01-29 DOI: 10.1080/21655979.2024.2302653
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引用次数: 0
Phenolic amides (avenanthramides) in oats - an update review. 燕麦中的酚酰胺(venanthramides)--最新综述。
IF 4.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-01-23 DOI: 10.1080/21655979.2024.2305029
Xi Xie, Miaoyan Lin, Gengsheng Xiao, Huifan Liu, Feng Wang, Dongjie Liu, Lukai Ma, Qin Wang, Zhiyong Li

Oats (Avena sativa L.) are one of the worldwide cereal crops. Avenanthramides (AVNs), the unique plant alkaloids of secondary metabolites found in oats, are nutritionally important for humans and animals. Numerous bioactivities of AVNs have been investigated and demonstrated in vivo and in vitro. Despite all these, researchers from all over the world are taking efforts to learn more knowledge about AVNs. In this work, we highlighted the recent updated findings that have increased our understanding of AVNs bioactivity, distribution, and especially the AVNs biosynthesis. Since the limits content of AVNs in oats strictly hinders the demand, understanding the mechanisms underlying AVN biosynthesis is important not only for developing a renewable, sustainable, and environmentally friendly source in both plants and microorganisms but also for designing effective strategies for enhancing their production via induction and metabolic engineering. Future directions for improving AVN production in native producers and heterologous systems for food and feed use are also discussed. This summary will provide a broad view of these specific natural products from oats.

燕麦(Avena sativa L.)是世界谷类作物之一。燕麦次生代谢产物中独特的植物生物碱(Avenanthramides,AVNs)对人类和动物具有重要的营养价值。人们已经在体内和体外研究并证实了 AVNs 的多种生物活性。尽管如此,世界各地的研究人员仍在努力学习更多有关 AVNs 的知识。在这项工作中,我们重点介绍了最近的最新研究成果,这些成果加深了我们对 AVNs 生物活性、分布,尤其是 AVNs 生物合成的了解。由于燕麦中的 AVNs 含量有限,严格限制了燕麦的需求,因此了解 AVNs 生物合成的基本机制不仅对开发植物和微生物中的可再生、可持续和环境友好型来源非常重要,而且对设计通过诱导和代谢工程提高 AVNs 产量的有效策略也非常重要。此外,还讨论了提高本地生产者和用于食品和饲料的异源系统中 AVN 产量的未来方向。本摘要将提供有关燕麦中这些特定天然产品的广阔视野。
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引用次数: 0
Retracted article: Mechanism of isosorbide dinitrate combined with exercise training rehabilitation to mobilize endothelial progenitor cells in patients with coronary heart disease. 被撤回的文章:二硝酸异山梨酯与运动训练康复相结合调动冠心病患者内皮祖细胞的机制。
IF 4.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2021-11-05 DOI: 10.1080/21655979.2021.2000258
Ruozhu Dai, Huilin Zhuo, Yangchun Chen, Kelian Zhang, Yongda Dong, Chengbo Chen, Wei Wang

Ruozhu Dai, Huilin Zhuo, Yangchun Chen, Kelian Zhang, Yongda Dong, Chengbo Chen and Wei Wang. Mechanism of isosorbide dinitrate combined with exercise training rehabilitation to mobilize endothelial progenitor cells in patients with coronary heart disease. Bioengineered. 2021 Nov. doi: 10.1080/21655979.2021.2000258.Since publication, significant concerns have been raised about the compliance with ethical policies for human research and the integrity of the data reported in the article.When approached for an explanation, the authors provided some original data but were not able to provide all the necessary supporting information. As verifying the validity of published work is core to the scholarly record's integrity, we are retracting the article. All authors listed in this publication have been informed.We have been informed in our decision-making by our editorial policies and the COPE guidelines.The retracted article will remain online to maintain the scholarly record, but it will be digitally watermarked on each page as 'Retracted.'

戴若竹、卓慧琳、陈阳春、张克连、董永达、陈成波、王伟二硝酸异山梨酯联合运动康复训练调动冠心病患者内皮祖细胞的机制。生物工程。2021年11月。doi: 10.1080/21655979.2021.2000258.自发表以来,人们对该文是否符合人类研究伦理政策以及文中所报告数据的完整性产生了极大的担忧。当要求作者做出解释时,作者提供了一些原始数据,但未能提供所有必要的支持信息。由于核实发表作品的有效性是学术记录完整性的核心,我们将撤回这篇文章。我们的决策参考了我们的编辑政策和 COPE 指南。被撤稿的文章将继续在线,以保持学术记录,但每页上都会有数字水印'Retracted'(撤稿)。
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引用次数: 0
Statement of Retraction: Exosome-delivered BMP-2 and polyaspartic acid promotes tendon bone healing in rotator cuff tear via Smad/RUNX2 signaling pathway. 撤回声明:外泌体递送的BMP-2和聚天冬氨酸通过Smad/RUNX2信号通路促进肩袖撕裂的肌腱骨愈合。
IF 4.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-02-20 DOI: 10.1080/21655979.2024.2299604
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引用次数: 0
Statement of Retraction: Long non-coding RNA DCST1-AS1/hsa-miR-582-5p/HMGB1 axis regulates colorectal cancer progression. 撤回声明:长非编码 RNA DCST1-AS1/hsa-miR-582-5p/HMGB1 轴调控结直肠癌的进展。
IF 4.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-02-20 DOI: 10.1080/21655979.2023.2299524
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引用次数: 0
Statement of Retraction: Propofol inhibits oxidative stress injury through the glycogen synthase kinase 3 beta/nuclear factor erythroid 2-related factor 2/heme oxygenase-1 signaling pathway. 撤回声明:丙泊酚通过糖原合成酶激酶 3 beta/核因子红细胞 2 相关因子 2/血红素加氧酶 1 信号通路抑制氧化应激损伤。
IF 4.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-02-20 DOI: 10.1080/21655979.2024.2299589
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引用次数: 0
Genetically engineered IgG1 and nanobody oligomers acquire strong intrinsic CD40 agonism. 基因工程 IgG1 和纳米抗体寡聚体具有很强的 CD40 本征激动作用。
IF 4.9 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-01-12 DOI: 10.1080/21655979.2024.2302246
Nienke Hesen, Mohamed Anany, Andre Freidel, Mediya Baker, Daniela Siegmund, Olena Zaitseva, Harald Wajant, Isabell Lang

Most anti-CD40 antibodies show robust agonism only upon binding to FcγR+ cells, such as B cells, macrophages, or DCs, but a few anti-CD40 antibodies display also strong intrinsic agonism dependent on the recognized epitope and/or isotype. It is worth mentioning, however, that also the anti-CD40 antibodies with intrinsic agonism can show a further increase in agonistic activity when bound by FcγR-expressing cells. Thus, conventional antibodies appear not to be sufficient to trigger the maximum possible CD40 activation independent from FcγR-binding. We proved here the hypothesis that oligomeric and oligovalent anti-CD40 antibody variants generated by genetic engineering display high intrinsic, thus FcγR-independent, agonistic activity. We generated tetra-, hexa- and dodecavalent variants of six anti-CD40 antibodies and a CD40-specific nanobody. All these oligovalent variants, even when derived of bivalent antagonistic anti-CD40 antibodies, showed strongly enhanced CD40 agonism compared to their conventional counterparts. In most cases, the CD40 agonism reached the maximum response induced by FcγR-bound anti-CD40 antibodies or membrane CD40L, the natural engager of CD40. In sum, our data show that increasing the valency of anti-CD40 antibody constructs by genetic engineering regularly results in molecules with high intrinsic agonism and level out the specific limitations of the parental antibodies.

大多数抗 CD40 抗体只有在与 FcγR+ 细胞(如 B 细胞、巨噬细胞或 DCs)结合时才会表现出强大的激动作用,但也有少数抗 CD40 抗体会根据识别的表位和/或同种型表现出强大的内在激动作用。但值得一提的是,具有内在激动作用的抗 CD40 抗体在与表达 FcγR 的细胞结合时,其激动活性也会进一步增强。因此,传统抗体似乎不足以在不与 FcγR 结合的情况下引发最大可能的 CD40 激活。我们在此证明了一个假设,即通过基因工程产生的低聚和低价抗 CD40 抗体变体具有很高的内在激动活性,因此与 FcγR 无关。我们生成了六种抗 CD40 抗体和一种 CD40 特异性纳米抗体的四价、六价和十二价变体。与传统抗体相比,所有这些寡价变体,即使是由二价拮抗抗 CD40 抗体衍生而来,也显示出强烈的 CD40 激动性。在大多数情况下,CD40 的激动作用达到了 FcγR 结合的抗 CD40 抗体或膜 CD40L(CD40 的天然吸引体)诱导的最大反应。总之,我们的数据表明,通过基因工程提高抗 CD40 抗体构建体的效价可定期产生具有高内在激动作用的分子,并消除亲代抗体的特异性限制。
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引用次数: 0
Statement of Retraction: The mechanism of α2-macroglobulin against oxidative stress and promoting cell proliferation in intervertebral disc degeneration. 撤回声明:α2-巨球蛋白在椎间盘退变中抗氧化应激和促进细胞增殖的机制。
IF 4.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-02-01 DOI: 10.1080/21655979.2024.2302658
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引用次数: 0
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