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Characteristics of Gut Microbiome in the Murine Model of Pancreatic Cancer with Damp-Heat Syndrome. 湿热综合征胰腺癌小鼠模型的肠道微生物组特征
IF 3.9 3区 工程技术 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-16 DOI: 10.3390/biomedicines12102360
Yangbo Tong, Fang Han, Mengyao Liu, Tianyu Xu, Aiqin Zhang, Jiangjiang Qin, Yuhua Zhang, Xiang Qian

Purpose: Murine models of pancreatic cancer with damp-heat syndrome were established based on two methods to explore the differences in the composition of intestinal flora and to seek characteristic genera with potential for model evaluation.

Methods: In our study, thirty-four C57BL/6J male mice were randomly divided into a control group (Con), a model group (Mod), a classic damp-heat syndrome group (CDHS), and a climate-chamber group (CC). CDHS and CC groups were fed with a high-fat diet and glucose water, while the CDHS group was given 2.4 g/kg alcohol by gavage for 10 days, and the CC group was placed in a climatic chamber with a set temperature of (32 ± 1) °C and humidity of (92 ± 2)% for 10 days. The Mod group, CDHS group, and CC group underwent tumor-building experiments on day 11. Tumorigenicity was then assessed twice a week. After 4 weeks, feces, colon tissue, and tumor tissue were taken from the mice and were tested, and the mice were euthanized afterwards.

Results: Mice in the CDHS and CC groups showed symptoms similar to the clinical damp-heat syndrome observed in traditional Chinese medicine (TCM), and exhibited a worse general condition and more rapid tumor growth trend than those in the Mod group. The pathological examination indicated that inflammation was prevalent in the CDHS and CC groups. Both groups had a disrupted intestinal barrier and an overgrowth of pathogenic bacteria such as c_Gammaproteobacteria, o_Enterobacteriales, and g_Bacteroides. Their microbiota composition showed greater diversity.

Conclusions: Intestinal flora may have a promising future in the discovery of indicators for evaluating a model of damp-heat syndrome in pancreatic cancer.

目的:基于两种方法建立胰腺癌湿热综合征小鼠模型,以探索肠道菌群组成的差异,并寻找具有模型评估潜力的特征菌属:在我们的研究中,34只C57BL/6J雄性小鼠被随机分为对照组(Con)、模型组(Mod)、典型湿热综合征组(CDHS)和气候箱组(CC)。CDHS组和CC组喂食高脂饮食和葡萄糖水,CDHS组灌胃2.4克/千克酒精10天,CC组置于设定温度为(32±1)℃、湿度为(92±2)%的气候箱中10天。Mod 组、CDHS 组和 CC 组在第 11 天进行肿瘤形成实验。然后每周评估肿瘤致病性两次。4 周后,对小鼠的粪便、结肠组织和肿瘤组织进行检测,随后对小鼠实施安乐死:结果:CDHS组和CC组小鼠表现出类似中医临床湿热证的症状,与Mod组小鼠相比,全身状况更差,肿瘤生长趋势更快。病理检查显示,CDHS 组和 CC 组普遍存在炎症。两组患者的肠道屏障均被破坏,致病菌过度生长,如c_甘露聚糖杆菌、o_肠杆菌和g_杆菌。他们的微生物群组成显示出更大的多样性:肠道菌群在发现评估胰腺癌湿热综合征模型的指标方面前景广阔。
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引用次数: 0
His Bundle Pacing and Left Bundle Branch Pacing in Patients with Heart Failure. 心力衰竭患者的 His Bundle 起搏和左束支起搏。
IF 3.9 3区 工程技术 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-16 DOI: 10.3390/biomedicines12102356
Patrycja Paluszkiewicz, Adrian Martuszewski, Jadwiga Radziejewska, Jacek Zawadzki, Jacek Smereka, Jacek Gajek

Background: His bundle pacing (HBP) and left bundle branch pacing (LBBP) are emerging therapies for patients with heart failure and conduction disorders, offering potential advantages over traditional pacing methods. These approaches aim to restore physiological conduction and improve cardiac function more effectively.

Objective: This study aims to evaluate the efficacy and safety of HBP and LBBP in patients with heart failure and conduction disturbances, comparing these techniques to conventional pacing.

Methods: A comprehensive review of recent studies and clinical trials was conducted, focusing on the performance of HBP and LBBP in improving cardiac function, reducing QRS duration, and enhancing overall patient outcomes. The analysis includes data on clinical efficacy, procedural safety, and long-term benefits associated with these pacing modalities.

Results: Both HBP and LBBP have demonstrated significant improvements in cardiac function and clinical outcomes compared to conventional pacing. HBP effectively restores physiological conduction with improved synchronization and a reduction in QRS duration. LBBP has shown enhanced left ventricular activation, leading to better overall cardiac performance. Both techniques have been associated with a lower incidence of complications and a higher success rate in achieving optimal pacing thresholds.

Conclusions: HBP and LBBP offer promising alternatives to traditional pacing for patients with heart failure and conduction disorders. These advanced pacing strategies provide superior clinical outcomes and improved cardiac function with reduced risk of complications. Further research and clinical trials are needed to fully establish the long-term benefits and safety profiles of these techniques in diverse patient populations.

背景:他束起搏(HBP)和左束支起搏(LBBP)是治疗心衰和传导障碍患者的新兴疗法,与传统起搏方法相比具有潜在优势。这些方法旨在恢复生理传导,更有效地改善心脏功能:本研究旨在评估 HBP 和 LBBP 对心衰和传导障碍患者的疗效和安全性,并将这些技术与传统起搏方法进行比较:方法: 对近期的研究和临床试验进行了全面回顾,重点关注 HBP 和 LBBP 在改善心功能、缩短 QRS 持续时间和提高患者整体疗效方面的表现。分析包括与这些起搏方式相关的临床疗效、程序安全性和长期益处的数据:结果:与传统起搏方式相比,HBP 和 LBBP 在心脏功能和临床疗效方面均有显著改善。HBP 能有效恢复生理传导,改善同步性并缩短 QRS 时程。LBBP 则增强了左心室的激活,从而改善了整体心脏功能。这两种技术的并发症发生率较低,达到最佳起搏阈值的成功率较高:HBP和LBBP为心力衰竭和传导障碍患者提供了替代传统起搏的可行方法。结论:HBP 和 LBBP 为心力衰竭和传导障碍患者提供了前景广阔的传统起搏替代方案,这些先进的起搏策略可在降低并发症风险的同时提供卓越的临床疗效并改善心脏功能。还需要进一步的研究和临床试验来充分确定这些技术在不同患者群体中的长期益处和安全性。
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引用次数: 0
Prognostic Role of PSMA-Targeted Imaging in Metastatic Castration-Resistant Prostate Cancer: An Overview. PSMA 靶向成像在转移性阉割耐药前列腺癌中的预后作用:概述。
IF 3.9 3区 工程技术 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-16 DOI: 10.3390/biomedicines12102355
Matteo Caracciolo, Angelo Castello, Massimo Castellani, Mirco Bartolomei, Egesta Lopci

Objectives: Prostate-specific membrane antigen (PSMA) positron emission tomography/computed tomography (PET/CT) has gained a primary role in prostate cancer (PCa) imaging, overcoming conventional imaging and prostate-specific antigen (PSA) serum levels, and has recently emerged as a promising technique for monitoring therapy response in metastatic castration-resistant prostate cancer (mCRPC) patients treated with novel hormonal therapy, taxanes, and radioligand therapy (RLT). In this review, we aim to provide an overview of the most relevant aspects under study and future prospects related to the prognostic role of PSMA PET/CT in mCRPC.

Methods: A systematic literature search was performed in the following databases: MEDLINE, PubMed, and EMBASE databases. The study focused exclusively on English-language studies, excluding papers not pertinent to the topic.

Results: PSMA PET imaging offers a higher sensitivity and specificity than conventional imaging and provides accurate staging and efficient diagnosis of distant metastases. The data presented herein highlight the usefulness of PET in risk stratification, with a prognostic potential that can have a significant impact on clinical practice. Several prospective trials are ongoing and will shortly provide more evidence supporting the prognostic potential of PET PSMA data in this clinical scenario.

Conclusions: Current evidence proves the prognostic role of PSMA PET/CT in different settings, with raising relevance also in the context of mCRPC.

目的:前列腺特异性膜抗原(PSMA)正电子发射断层扫描/计算机断层扫描(PET/CT)已在前列腺癌(PCa)成像中占据主要地位,超越了传统成像和前列腺特异性抗原(PSA)血清水平,最近已成为监测接受新型激素疗法、类固醇类药物和放射性配体疗法(RLT)治疗的转移性耐受性前列腺癌(mCRPC)患者治疗反应的一种有前途的技术。在这篇综述中,我们旨在概述与PSMA PET/CT在mCRPC中的预后作用有关的最相关的研究内容和未来前景:在以下数据库中进行了系统的文献检索:方法:在以下数据库中进行了系统的文献检索:MEDLINE、PubMed 和 EMBASE 数据库。研究只关注英文研究,排除了与主题无关的论文:与传统成像相比,PSMA PET 成像具有更高的灵敏度和特异性,可提供准确的分期和有效的远处转移诊断。本文提供的数据凸显了 PET 在风险分层中的作用,其预后潜力可对临床实践产生重大影响。几项前瞻性试验正在进行中,不久将提供更多证据支持 PET PSMA 数据在这种临床情况下的预后潜力:目前的证据证明了PSMA PET/CT在不同情况下的预后作用,在mCRPC方面也具有更高的相关性。
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引用次数: 0
Current Applications of Raman Spectroscopy in Intraoperative Neurosurgery. 拉曼光谱在神经外科术中的应用现状。
IF 3.9 3区 工程技术 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-16 DOI: 10.3390/biomedicines12102363
Daniel Rivera, Tirone Young, Akhil Rao, Jack Y Zhang, Cole Brown, Lily Huo, Tyree Williams, Benjamin Rodriguez, Alexander J Schupper

Background: Neurosurgery demands exceptional precision due to the brain's complex and delicate structures, necessitating precise targeting of pathological targets. Achieving optimal outcomes depends on the surgeon's ability to accurately differentiate between healthy and pathological tissues during operations. Raman spectroscopy (RS) has emerged as a promising innovation, offering real-time, in vivo non-invasive biochemical tissue characterization. This literature review evaluates the current research on RS applications in intraoperative neurosurgery, emphasizing its potential to enhance surgical precision and patient outcomes.

Methods: Following PRISMA guidelines, a comprehensive systematic review was conducted using PubMed to extract relevant peer-reviewed articles. The inclusion criteria focused on original research discussing real-time RS applications with human tissue samples in or near the operating room, excluding retrospective studies, reviews, non-human research, and other non-relevant publications.

Results: Our findings demonstrate that RS significantly improves tumor margin delineation, with handheld devices achieving high sensitivity and specificity. Stimulated Raman Histology (SRH) provides rapid, high-resolution tissue images comparable to traditional histopathology but with reduced time to diagnosis. Additionally, RS shows promise in identifying tumor types and grades, aiding precise surgical decision-making. RS techniques have been particularly beneficial in enhancing the accuracy of glioma surgeries, where distinguishing between tumor and healthy tissue is critical. By providing real-time molecular data, RS aids neurosurgeons in maximizing the extent of resection (EOR) while minimizing damage to normal brain tissue, potentially improving patient outcomes and reducing recurrence rates.

Conclusions: This review underscores the transformative potential of RS in neurosurgery, advocating for continued innovation and research to fully realize its benefits. Despite its substantial potential, further research is needed to validate RS's clinical utility and cost-effectiveness.

背景:由于大脑结构复杂而精细,神经外科手术要求异常精确,必须精确瞄准病理目标。能否取得最佳效果取决于外科医生在手术过程中准确区分健康组织和病理组织的能力。拉曼光谱(RS)是一种前景广阔的创新技术,可提供实时、体内无创生化组织表征。这篇文献综述评估了目前关于拉曼光谱在术中神经外科应用的研究,强调了拉曼光谱在提高手术精确度和患者预后方面的潜力:按照 PRISMA 指南,我们使用 PubMed 进行了一次全面的系统性综述,以提取相关的同行评议文章。纳入标准侧重于讨论手术室内或手术室附近人体组织样本实时 RS 应用的原创性研究,排除了回顾性研究、综述、非人类研究和其他非相关出版物:结果:我们的研究结果表明,RS 能明显改善肿瘤边缘的划分,手持式设备能达到很高的灵敏度和特异性。受激拉曼组织学(SRH)可提供与传统组织病理学相媲美的快速、高分辨率组织图像,但诊断时间更短。此外,RS 还能识别肿瘤类型和等级,有助于做出精确的手术决策。RS 技术尤其有助于提高胶质瘤手术的准确性,因为在胶质瘤手术中,区分肿瘤和健康组织至关重要。通过提供实时分子数据,RS 可帮助神经外科医生最大限度地扩大切除范围(EOR),同时最大限度地减少对正常脑组织的损伤,从而改善患者预后并降低复发率:本综述强调了 RS 在神经外科中的变革潜力,主张继续创新和研究,以充分实现其优势。尽管 RS 潜力巨大,但仍需进一步研究以验证其临床实用性和成本效益。
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引用次数: 0
The Association between Gut Microbiota and Serum Biomarkers in Children with Atopic Dermatitis. 特应性皮炎患儿肠道微生物群与血清生物标志物之间的关系
IF 3.9 3区 工程技术 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-15 DOI: 10.3390/biomedicines12102351
Irina G Kalashnikova, Alexandra I Nekrasova, Anna V Korobeynikova, Maria M Bobrova, German A Ashniev, Sirozhdin Yu Bakoev, Angelica V Zagainova, Mariya V Lukashina, Larisa R Tolkacheva, Ekaterina S Petryaikina, Alexander S Nekrasov, Sergey I Mitrofanov, Tatyana A Shpakova, Lidiya V Frolova, Natalya V Bulanova, Ekaterina A Snigir, Vladimir E Mukhin, Vladimir S Yudin, Valentin V Makarov, Anton A Keskinov, Sergey M Yudin

Background. Currently, it is known that the gut microbiota plays an important role in the functioning of the immune system, and a rebalancing of the bacterial community can arouse complex immune reactions and lead to immune-mediated responses in an organism, in particular, the development of atopic dermatitis (AD). Cytokines and chemokines are regulators of the innate and adaptive immune response and represent the most important biomarkers of the immune system. It is known that changes in cytokine profiles are a hallmark of many diseases, including atopy. However, it remains unclear how the bacterial imbalance disrupts the function of the immune response in AD. Objectives. We attempted to determine the role of gut bacteria in modulating cytokine pathways and their role in atopic inflammation. Methods. We sequenced the 16S rRNA gene from 50 stool samples of children aged 3-12 years who had confirmed atopic dermatitis, and 50 samples from healthy children to serve as a control group. To evaluate the immune status, we conducted a multiplex immunofluorescence assay and measured the levels of 41 cytokines and chemokines in the serum of all participants. Results. To find out whether changes in the composition of the gut microbiota were significantly associated with changes in the level of inflammatory cytokines, a correlation was calculated between each pair of bacterial family and cytokine. In the AD group, 191 correlations were significant (Spearman's correlation coefficient, p ≤ 0.05), 85 of which were positive and 106 which were negative. Conclusions. It has been demonstrated that intestinal dysbiosis is associated with alterations in cytokine profiles, specifically an increase in proinflammatory cytokine concentrations. This may indicate a systemic impact of these conditions, leading to an imbalance in the immune system's response to the Th2 type. As a result, atopic conditions may develop. Additionally, a correlation between known AD biomarkers (IL-5, IL-8, IL-13, CCL22, IFN-γ, TNF-α) and alterations in the abundance of bacterial families (Pasteurellaceae, Barnesiellaceae, Eubacteriaceae) was observed.

背景。目前已知,肠道微生物群在免疫系统的运作中发挥着重要作用,细菌群落的再平衡可引起复杂的免疫反应,导致机体出现免疫介导的反应,尤其是特应性皮炎(AD)的发生。细胞因子和趋化因子是先天性和适应性免疫反应的调节因子,是免疫系统最重要的生物标志物。众所周知,细胞因子谱的变化是包括过敏症在内的许多疾病的标志。然而,目前仍不清楚细菌失衡是如何干扰 AD 免疫反应功能的。研究目的我们试图确定肠道细菌在调节细胞因子通路中的作用及其在特应性炎症中的作用。方法。我们对 50 份确诊为特应性皮炎的 3-12 岁儿童粪便样本和 50 份健康儿童样本进行了 16S rRNA 基因测序,作为对照组。为了评估免疫状态,我们进行了多重免疫荧光测定,并测量了所有参与者血清中 41 种细胞因子和趋化因子的水平。结果为了了解肠道微生物群组成的变化是否与炎症细胞因子水平的变化有显著关联,我们计算了每对细菌家族和细胞因子之间的相关性。在 AD 组中,有 191 个相关性显著(斯皮尔曼相关系数,P ≤ 0.05),其中 85 个为正相关,106 个为负相关。结论研究表明,肠道菌群失调与细胞因子谱的改变有关,特别是促炎细胞因子浓度的增加。这可能表明这些病症会对全身产生影响,导致免疫系统对 Th2 类型的反应失衡。因此,可能会出现特应性症状。此外,还观察到已知的过敏症生物标志物(IL-5、IL-8、IL-13、CCL22、IFN-γ、TNF-α)与细菌科(巴斯德氏菌科、巴氏杆菌科、优杆菌科)丰度变化之间的相关性。
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引用次数: 0
Intestinal Region-Dependent Impact of NFκB-Nrf Crosstalk in Myenteric Neurons and Adjacent Muscle Cells in Type 1 Diabetic Rats. NFκB-Nrf 交叉作用对 1 型糖尿病大鼠肠系膜神经元和邻近肌肉细胞的肠道区域依赖性影响
IF 3.9 3区 工程技术 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-15 DOI: 10.3390/biomedicines12102347
Bence Pál Barta, Benita Onhausz, Abigél Egyed-Kolumbán, Afnan Al Doghmi, János Balázs, Zita Szalai, Ágnes Ferencz, Edit Hermesz, Mária Bagyánszki, Nikolett Bódi

Background/objectives: Type 1 diabetes affects cytokines as potential inducers of NFκB signalling involved in inflammation and neuronal survival. Our goal was to assess the expression of NFκB p65 and its negative regulator, Nrf2, in myenteric neurons and adjacent smooth muscle of different gut segments after chronic hyperglycaemia and immediate insulin treatment.

Methods: After ten weeks of hyperglycaemia, intestinal samples of control, streptozotocin-induced diabetic and insulin-treated diabetic rats were prepared for fluorescent immunohistochemistry, immunogold electron microscopy, ELISA and qPCR.

Results: In the diabetic rats, the proportion of NFκB p65-immunoreactive myenteric neurons decreased significantly in the duodenum and increased in the ileum. The density of NFκB p65-labelling gold particles increased in the ileal but remained unchanged in the duodenal ganglia. Meanwhile, both total and nuclear Nrf2 density increased in the myenteric neurons of the diabetic duodenum. In smooth muscle, NFκB p65 and Nrf2 density increased in the small intestine of diabetic rats. While on the mRNA level, NFκB p65 and Nrf2 were induced, on the protein level, NFκB p65 increased and Nrf2 decreased in muscle/myenteric plexus homogenates. Insulin treatment had protective effects.

Conclusions: Our findings reveal a segment-specific NFκB and Nrf expression in myenteric neurons and ganglionic muscular environments, which may contribute to regional neuronal survival and motility disturbances in diabetes.

背景/目的:1 型糖尿病会影响细胞因子,而细胞因子是参与炎症和神经元存活的 NFκB 信号的潜在诱导因子。我们的目标是评估慢性高血糖和立即胰岛素治疗后不同肠段肠髓神经元和邻近平滑肌中 NFκB p65 及其负调控因子 Nrf2 的表达情况:方法:高血糖十周后,制备对照组、链脲佐菌素诱导糖尿病组和胰岛素治疗糖尿病组大鼠的肠道样本,进行荧光免疫组化、免疫金电镜、ELISA 和 qPCR 检测:结果:在糖尿病大鼠中,NFκB p65 免疫反应性肠肌细胞神经元的比例在十二指肠显著减少,在回肠显著增加。NFκB p65 标记金颗粒的密度在回肠中增加,但在十二指肠神经节中保持不变。与此同时,糖尿病十二指肠肌神经元的Nrf2总密度和核密度都有所增加。在糖尿病大鼠的小肠平滑肌中,NFκB p65 和 Nrf2 密度增加。在mRNA水平上,NFκB p65和Nrf2被诱导,而在蛋白质水平上,肌肉/肠神经丛匀浆中的NFκB p65增加,Nrf2减少。胰岛素治疗具有保护作用:我们的研究结果表明,在肠系膜神经元和神经节肌肉环境中,NFκB和Nrf的表达具有区段特异性,这可能是糖尿病患者区域神经元存活和运动障碍的原因之一。
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引用次数: 0
Correction of Batch Effect in Gut Microbiota Profiling of ASD Cohorts from Different Geographical Origins. 校正来自不同地域的 ASD 群体的肠道微生物群分析中的批次效应。
IF 3.9 3区 工程技术 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-15 DOI: 10.3390/biomedicines12102350
Matteo Scanu, Federica Del Chierico, Riccardo Marsiglia, Francesca Toto, Silvia Guerrera, Giovanni Valeri, Stefano Vicari, Lorenza Putignani

Background: To date, there have been numerous metataxonomic studies on gut microbiota (GM) profiling based on the analyses of data from public repositories. However, differences in study population and wet and dry pipelines have produced discordant results. Herein, we propose a biostatistical approach to remove these batch effects for the GM characterization in the case of autism spectrum disorders (ASDs).

Methods: An original dataset of GM profiles from patients with ASD was ecologically characterized and compared with GM public digital profiles of age-matched neurotypical controls (NCs). Also, GM data from seven case-control studies on ASD were retrieved from the NCBI platform and exploited for analysis. Hence, on each dataset, conditional quantile regression (CQR) was performed to reduce the batch effects originating from both technical and geographical confounders affecting the GM-related data. This method was further applied to the whole dataset matrix, obtained by merging all datasets. The ASD GM markers were identified by the random forest (RF) model.

Results: We observed a different GM profile in patients with ASD compared with NC subjects. Moreover, a significant reduction of technical- and geographical-dependent batch effects in all datasets was achieved. We identified Bacteroides_H, Faecalibacterium, Gemmiger_A_73129, Blautia_A_141781, Bifidobacterium_388775, and Phocaeicola_A_858004 as robust GM bacterial biomarkers of ASD. Finally, our validation approach provided evidence of the validity of the QCR method, showing high values of accuracy, specificity, sensitivity, and AUC-ROC.

Conclusions: Herein, we proposed an updated biostatistical approach to reduce the technical and geographical batch effects that may negatively affect the description of bacterial composition in microbiota studies.

背景:迄今为止,基于对公共资料库数据的分析,已经有许多关于肠道微生物群(GM)特征的元分类研究。然而,研究人群和干湿管道的差异产生了不一致的结果。在此,我们提出了一种生物统计方法,以消除自闭症谱系障碍(ASD)情况下基因组特征描述的批次效应:方法:我们对来自 ASD 患者的基因组学特征原始数据集进行了生态学分析,并将其与年龄匹配的神经畸形对照组(NCs)的基因组学公共数字特征进行了比较。此外,还从 NCBI 平台检索了七项 ASD 病例对照研究的 GM 数据,并利用这些数据进行分析。因此,在每个数据集上都进行了条件量子回归(CQR),以减少影响 GM 相关数据的技术和地理混杂因素所产生的批量效应。该方法还进一步应用于合并所有数据集后得到的整个数据集矩阵。随机森林(RF)模型确定了 ASD 基因标记物:我们观察到 ASD 患者的基因组特征与 NC 受试者不同。此外,在所有数据集中,技术和地理依赖的批次效应明显减少。我们发现 Bacteroides_H、Faecalibacterium、Gemmiger_A_73129、Blautia_A_141781、Bifidobacterium_388775 和 Phocaeicola_A_858004 是 ASD 的强效基因改造细菌生物标记物。最后,我们的验证方法证明了 QCR 方法的有效性,显示出较高的准确性、特异性、灵敏度和 AUC-ROC 值:在此,我们提出了一种最新的生物统计方法,以减少可能对微生物群研究中细菌组成描述产生负面影响的技术和地理批次效应。
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引用次数: 0
Altered PLCβ/IP3/Ca2+ Signaling Pathway Activated by GPRCs in Olfactory Neuronal Precursor Cells Derived from Patients Diagnosed with Schizophrenia. 被诊断为精神分裂症患者的嗅神经元前体细胞中 GPRC 激活的 PLCβ/IP3/Ca2+ 信号通路发生改变
IF 3.9 3区 工程技术 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-15 DOI: 10.3390/biomedicines12102343
Zuly A Sánchez-Florentino, Bianca S Romero-Martínez, Edgar Flores-Soto, Luis M Montaño, Bettina Sommer, Marcela Valdés-Tovar, Jesús Argueta, Eduardo Calixto, Arnoldo Aquino-Gálvez, Manuel Castillejos-López, Héctor Serrano, Juan C Gomez-Verjan, Germán O López-Riquelme, Gloria A Benítez-King, Ruth Jaimez, Héctor Solís-Chagoyán

Background: Schizophrenia (SZ) is a multifactorial chronic psychiatric disorder with a worldwide prevalence of 1%. Altered expression of PLCβ occurs in SZ patients, suggesting alterations in the PLCβ/IP3/Ca2+ signaling pathway. This cascade regulates critical cellular processes in all cell types, including the neuronal lineage; however, there is scarce evidence regarding the functionality of this transduction signaling in neuronal cells derived from SZ patients. Objective: We evaluated the functionality of the PLCβ/IP3/Ca2+ pathway in olfactory neuronal precursor cells (hONPCs) obtained from SZ patients. Methods: Cryopreserved hONPCs isolated from SZ patients and healthy subjects (HS) were thawed. The cellular types in subcultures were corroborated by immunodetection of the multipotency and lineage markers SOX-2, Musashi-1, nestin, and β-III tubulin. The PLCβ/IP3/Ca2+ pathway was activated by GPCR (Gq) ligands (ATP, UTP, serotonin, and epinephrine). In addition, PLCβ and IP3R were directly stimulated by perfusing cells with the activators m-3M3FBS and ADA, respectively. Cytosolic Ca2+ was measured by microfluorometry and by Ca2+ imaging. The amount and subcellular distribution of the PLCβ1 and PLCβ3 isoforms were evaluated by confocal immunofluorescence. IP3 concentration was measured by ELISA. Results: The results show that the increase of cytosolic Ca2+ triggered by GPCR ligands or directly through either PLCβ or IP3R activation was significantly lower in SZ-derived hONPCs, regarding HS-derived cells. Moreover, the relative amount of the PLCβ1 and PLCβ3 isoforms and IP3 production stimulated with m-3M3FBS were reduced in SZ-derived cells. Conclusions: Our results suggest an overall functional impairment in the PLCβ/IP3/Ca2+ signaling pathway in SZ-derived hONPCs.

背景:精神分裂症(SZ)是一种多因素慢性精神疾病,全球发病率为1%。SZ患者体内PLCβ的表达发生了改变,这表明PLCβ/IP3/Ca2+信号通路发生了改变。这一级联调节包括神经元系在内的所有细胞类型中的关键细胞过程;然而,有关这一信号转导在 SZ 患者神经元细胞中的功能的证据却很少。研究目的我们评估了 SZ 患者嗅觉神经元前体细胞(hONPCs)中 PLCβ/IP3/Ca2+ 通路的功能。研究方法解冻从 SZ 患者和健康受试者(HS)中分离的冷冻保存的 hONPCs。通过免疫检测多潜能和系标志物SOX-2、Musashi-1、nestin和β-III微管蛋白,证实亚培养物中的细胞类型。GPCR(Gq)配体(ATP、UTP、5-羟色胺和肾上腺素)激活了 PLCβ/IP3/Ca2+ 通路。此外,给细胞灌注激活剂 m-3M3FBS 和 ADA 可分别直接刺激 PLCβ 和 IP3R。细胞膜Ca2+通过微荧光计和Ca2+成像进行测量。共聚焦免疫荧光法评估了 PLCβ1 和 PLCβ3 同工酶的数量和亚细胞分布。用酶联免疫吸附法测定 IP3 的浓度。结果显示结果表明,由 GPCR 配体或直接通过 PLCβ 或 IP3R 激活引发的细胞膜 Ca2+ 的增加在 SZ 衍生的 hONPCs 中明显低于 HS 衍生的细胞。此外,在 SZ 衍生细胞中,PLCβ1 和 PLCβ3 同工酶的相对数量以及在 m-3M3FBS 刺激下产生的 IP3 均有所减少。结论我们的研究结果表明,在 SZ 衍生的 hONPCs 中,PLCβ/IP3/Ca2+ 信号通路的整体功能受损。
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引用次数: 0
A Transfer Learning-Based Framework for Classifying Lymph Node Metastasis in Prostate Cancer Patients. 基于迁移学习的前列腺癌淋巴结转移分类框架
IF 3.9 3区 工程技术 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-15 DOI: 10.3390/biomedicines12102345
Suryadipto Sarkar, Teresa Wu, Matthew Harwood, Alvin C Silva

Background: Prostate cancer is the second most common new cancer diagnosis in the United States. It is usually slow-growing, and when it is low-grade and confined to the prostate gland, it can be treated either conservatively (through active surveillance) or with surgery. However, if the cancer has spread beyond the prostate, such as to the lymph nodes, then that indicates a more aggressive cancer, and surgery may not be adequate. Methods: The challenge is that it is often difficult for radiologists reading prostate-specific imaging such as magnetic resonance images (MRIs) to differentiate malignant lymph nodes from non-malignant ones. An emerging field is the development of artificial intelligence (AI) models, including machine learning and deep learning, for medical imaging to assist in diagnostic tasks. Earlier research focused on implementing texture algorithms to extract imaging features used in classification models. More recently, researchers began studying the use of deep learning for both stand-alone feature extraction and end-to-end classification tasks. In order to tackle the challenges inherent in small datasets, this study was designed as a scalable hybrid framework utilizing pre-trained ResNet-18, a deep learning model, to extract features that were subsequently fed into a machine learning classifier to automatically identify malignant lymph nodes in patients with prostate cancer. For comparison, two texture algorithms were implemented, namely the gray-level co-occurrence matrix (GLCM) and Gabor. Results: Using an institutional prostate lymph node dataset (42 positives, 84 negatives), the proposed framework achieved an accuracy of 76.19%, a sensitivity of 79.76%, and a specificity of 69.05%. Using GLCM features, the classification achieved an accuracy of 61.90%, a sensitivity of 74.07%, and a specificity of 42.86%. Using Gabor features, the classification achieved an accuracy of 65.08%, a sensitivity of 73.47%, and a specificity of 52.50%. Conclusions: Our results demonstrate that a hybrid approach, i.e., using a pre-trainined deep learning model for feature extraction, followed by a machine learning classifier, is a viable solution. This hybrid approach is especially useful in medical-imaging-based applications with small datasets.

背景:前列腺癌是美国第二大最常见的新诊断癌症。前列腺癌通常生长缓慢,如果癌细胞级别较低且局限于前列腺内,可以通过保守治疗(积极监测)或手术治疗。但是,如果癌症已经扩散到前列腺以外的部位,如淋巴结,则表明癌症更具侵袭性,手术治疗可能无法奏效。方法面临的挑战是,放射科医生在阅读前列腺特异性成像(如核磁共振成像)时,往往难以区分恶性淋巴结和非恶性淋巴结。一个新兴领域是为医学成像开发人工智能(AI)模型,包括机器学习和深度学习,以协助诊断任务。早期的研究侧重于实施纹理算法,以提取分类模型中使用的成像特征。最近,研究人员开始研究在独立特征提取和端到端分类任务中使用深度学习。为了应对小型数据集固有的挑战,本研究设计了一个可扩展的混合框架,利用预先训练好的深度学习模型 ResNet-18 提取特征,随后将这些特征输入机器学习分类器,以自动识别前列腺癌患者的恶性淋巴结。为了进行比较,还采用了两种纹理算法,即灰度级共现矩阵(GLCM)和 Gabor。结果利用机构前列腺淋巴结数据集(42 个阳性,84 个阴性),所提出的框架达到了 76.19% 的准确率、79.76% 的灵敏度和 69.05% 的特异性。使用 GLCM 特征,分类准确率达到 61.90%,灵敏度为 74.07%,特异性为 42.86%。使用 Gabor 特征的分类准确率为 65.08%,灵敏度为 73.47%,特异度为 52.50%。结论我们的研究结果表明,混合方法(即使用预先训练好的深度学习模型进行特征提取,然后使用机器学习分类器)是一种可行的解决方案。这种混合方法尤其适用于数据集较小的基于医学影像的应用。
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引用次数: 0
Targeting the Intestinal Microbiota: A Novel Direction in the Treatment of Inflammatory Bowel Disease. 靶向肠道微生物群:治疗炎症性肠病的新方向
IF 3.9 3区 工程技术 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-15 DOI: 10.3390/biomedicines12102340
Jie Zhang, Huilin Gan, Xiaoyan Duan, Guangming Li

Over the past decade, there has been a rapid increase in the incidence of inflammatory bowel disease. It has been suggested that multifactorial interactions of environmental factors, genetic factors, immune response and intestinal microbiota are involved in the pathogenesis of inflammatory bowel disease. It is widely recognized that the intestinal microbiota are essential for human metabolism, the immune system and pathogen resistance, and are integral to human health. Therefore, the dysbiosis of the microbiota is a critical step leading to intestinal mucosal damage and a key factor in the pathogenesis of inflammatory bowel disease. Regulating the microbiota through interventions such as enteral nutrition, fecal microbiota transplantation, and probiotic supplementation has the potential to prevent or even reverse intestinal dysbiosis, opening up new perspectives for the treatment of inflammatory bowel disease.

过去十年来,炎症性肠病的发病率迅速上升。有研究认为,环境因素、遗传因素、免疫反应和肠道微生物群等多因素相互作用,参与了炎症性肠病的发病机制。人们普遍认为,肠道微生物群对人体新陈代谢、免疫系统和病原体抵抗力至关重要,是人体健康不可或缺的组成部分。因此,微生物群失调是导致肠粘膜损伤的关键步骤,也是炎症性肠病发病机制的关键因素。通过肠内营养、粪便微生物群移植和补充益生菌等干预措施调节微生物群,有可能预防甚至逆转肠道菌群失调,为治疗炎症性肠病开辟新的前景。
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