Pub Date : 2024-09-09eCollection Date: 2024-10-01DOI: 10.1364/BOE.525180
Oliwia Kaczkoś, Agnieszka Zielińska, Jacek Pniewski, Maciej Wojtkowski, Katarzyna Komar
Two-photon vision is a new and developing field in vision science. The phenomenon is based on visual perception of pulsed infrared lasers (800-1300 nm) due to the isomerization of visual pigments caused by two-photon absorption, with color perception corresponding to a wavelength about one-half of the stimulating wavelength in the near-infrared spectral range. Future applications of this effect, both in medical diagnostics and in virtual/augmented reality (VR/AR), require the ability to determine the luminance of the two-photon stimuli. However, the luminous efficiency function V(λ) outside of the visible range is unknown, requiring a non-standard approach to quantifying the luminance of two-photon stimuli. This study proposes a brightness adjustment method to determine the subjective luminance of two-photon infrared stimuli using photometric units. The repeatability of the proposed method with the background on was approximately equal to 407 td, more than twice as good as with the background off. In this report, we present the relationship between the luminance of two-photon stimuli and a physical quantity proposed for the first time: two-photon retinal illuminance. This relationship enables the prediction of stimulus luminance that could achieve nearly 670 cd/m2 within the safe range of laser power for the eye.
{"title":"Method for the determination of the luminance of two-photon vision stimuli.","authors":"Oliwia Kaczkoś, Agnieszka Zielińska, Jacek Pniewski, Maciej Wojtkowski, Katarzyna Komar","doi":"10.1364/BOE.525180","DOIUrl":"https://doi.org/10.1364/BOE.525180","url":null,"abstract":"<p><p>Two-photon vision is a new and developing field in vision science. The phenomenon is based on visual perception of pulsed infrared lasers (800-1300 nm) due to the isomerization of visual pigments caused by two-photon absorption, with color perception corresponding to a wavelength about one-half of the stimulating wavelength in the near-infrared spectral range. Future applications of this effect, both in medical diagnostics and in virtual/augmented reality (VR/AR), require the ability to determine the luminance of the two-photon stimuli. However, the luminous efficiency function <i>V</i>(<i>λ</i>) outside of the visible range is unknown, requiring a non-standard approach to quantifying the luminance of two-photon stimuli. This study proposes a brightness adjustment method to determine the subjective luminance of two-photon infrared stimuli using photometric units. The repeatability of the proposed method with the background on was approximately equal to 407 td, more than twice as good as with the background off. In this report, we present the relationship between the luminance of two-photon stimuli and a physical quantity proposed for the first time: <i>two-photon retinal illuminance</i>. This relationship enables the prediction of stimulus luminance that could achieve nearly 670 cd/m<sup>2</sup> within the safe range of laser power for the eye.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"15 10","pages":"5818-5830"},"PeriodicalIF":2.9,"publicationDate":"2024-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11482161/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142457268","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-09eCollection Date: 2024-10-01DOI: 10.1364/BOE.533855
Yingchun Li, Haobo Cheng
In this work, we developed a novel microfluidic paper-based analytical device to quantify the blood markers of liver function from human fingertips and whole blood samples. The device can quickly acquire information for screening liver injury and supporting clinical decision-making by simultaneously performing quantitative tests for alanine aminotransferase, aspartate aminotransferase, and albumin. We evaluated the detection accuracy and the storage stability of the device using fingertip samples. The yielded results of our device correlated well with those from Mindray BS350s, even under the conditions of 35 °C and 90%RH. Thus, it offers an effective platform for clinical assessment of liver injury particularly in resource-limited areas.
在这项工作中,我们开发了一种新型的微流体纸基分析装置,用于从人体指尖和全血样本中定量检测肝功能的血液指标。该装置可同时对丙氨酸氨基转移酶、天门冬氨酸氨基转移酶和白蛋白进行定量检测,从而快速获取肝损伤筛查信息,为临床决策提供支持。我们使用指尖样本对设备的检测准确性和储存稳定性进行了评估。即使在 35 °C 和 90%RH 的条件下,我们设备的检测结果与 Mindray BS350 的结果也有很好的相关性。因此,它为临床评估肝损伤提供了一个有效的平台,尤其是在资源有限的地区。
{"title":"Microfluidic point-of-care testing device for multiplexed detection of liver function blood markers.","authors":"Yingchun Li, Haobo Cheng","doi":"10.1364/BOE.533855","DOIUrl":"https://doi.org/10.1364/BOE.533855","url":null,"abstract":"<p><p>In this work, we developed a novel microfluidic paper-based analytical device to quantify the blood markers of liver function from human fingertips and whole blood samples. The device can quickly acquire information for screening liver injury and supporting clinical decision-making by simultaneously performing quantitative tests for alanine aminotransferase, aspartate aminotransferase, and albumin. We evaluated the detection accuracy and the storage stability of the device using fingertip samples. The yielded results of our device correlated well with those from Mindray BS350s, even under the conditions of 35 °C and 90%RH. Thus, it offers an effective platform for clinical assessment of liver injury particularly in resource-limited areas.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"15 10","pages":"5803-5817"},"PeriodicalIF":2.9,"publicationDate":"2024-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11482181/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142457269","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Surgical wound infection is a global postoperative issue adding a significant clinical burden and increasing healthcare costs. Early detection and subsequent diagnosis of infection is vital for accurate, early, and effective treatments. In this paper, we report a pilot study exploring spatial frequency domain imaging (SFDI) to monitor, in-vivo, a biopsy wound in human skin. The reduced scattering coefficient, μs′, absorption coefficient, μa and the oxygen saturation, StO2, were measured using a SFDI system at 617 and 850 nm. We found the μs′ was better capable of monitoring structural changes, possible pus within the wound, re-epithelialization, and collagen fiber remodeling, than with the eye alone. The μa map is capable of revealing the total hemoglobin distribution in the wound area but was limited in some regions due to the scab covering. This case study indicates SFDI’s potential for monitoring and quantifying the process of surgical wound healing and infection.
手术伤口感染是一个全球性的术后问题,不仅增加了临床负担,还增加了医疗成本。感染的早期检测和后续诊断对于准确、早期和有效治疗至关重要。在本文中,我们报告了一项探索空间频率域成像(SFDI)的试验性研究,以监测活体人体皮肤活检伤口。我们使用 SFDI 系统在 617 纳米和 850 纳米波长下测量了减散射系数 μ s ′、吸收系数 μ a 和血氧饱和度 StO2。我们发现,μ s ′ 比单独使用眼球更能监测结构变化、伤口内可能存在的脓液、再上皮化和胶原纤维重塑。μ a 地图能够显示伤口区域的总血红蛋白分布,但由于痂皮的覆盖,在某些区域受到限制。本案例研究表明,SFDI 具有监测和量化手术伤口愈合和感染过程的潜力。
{"title":"Using spatial frequency domain imaging to monitor a skin biopsy wound: a pilot study","authors":"Lai Zhang, Alistair Bounds, John Girkin","doi":"10.1364/boe.536843","DOIUrl":"https://doi.org/10.1364/boe.536843","url":null,"abstract":"Surgical wound infection is a global postoperative issue adding a significant clinical burden and increasing healthcare costs. Early detection and subsequent diagnosis of infection is vital for accurate, early, and effective treatments. In this paper, we report a pilot study exploring spatial frequency domain imaging (SFDI) to monitor, <jats:italic>in-vivo</jats:italic>, a biopsy wound in human skin. The reduced scattering coefficient, <jats:italic>μ</jats:italic><jats:sub> <jats:italic>s</jats:italic> </jats:sub><jats:sup>′</jats:sup>, absorption coefficient, <jats:italic>μ</jats:italic><jats:sub> <jats:italic>a</jats:italic> </jats:sub> and the oxygen saturation, <jats:italic>StO</jats:italic><jats:sub>2</jats:sub>, were measured using a SFDI system at 617 and 850 nm. We found the <jats:italic>μ</jats:italic><jats:sub> <jats:italic>s</jats:italic> </jats:sub><jats:sup>′</jats:sup> was better capable of monitoring structural changes, possible pus within the wound, re-epithelialization, and collagen fiber remodeling, than with the eye alone. The <jats:italic>μ</jats:italic><jats:sub> <jats:italic>a</jats:italic> </jats:sub> map is capable of revealing the total hemoglobin distribution in the wound area but was limited in some regions due to the scab covering. This case study indicates SFDI’s potential for monitoring and quantifying the process of surgical wound healing and infection.","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"13 1","pages":""},"PeriodicalIF":3.4,"publicationDate":"2024-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142247592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-06eCollection Date: 2024-10-01DOI: 10.1364/BOE.532052
Miguel Mireles, Gabriela Jiménez-Valerio, Jordi Morales-Dalmau, Johannes D Johansson, Mar Martínez-Lozano, Ernesto E Vidal-Rosas, Valentí Navarro-Pérez, David R Busch, Oriol Casanovas, Turgut Durduran, Clara Vilches
In this work, broadband diffuse reflectance spectroscopy (DRS) and diffuse correlation spectroscopy (DCS) were used to quantify deep tissue hemodynamics in a patient-derived orthotopic xenograft mouse model of clear cell renal cancer undergoing antiangiogenic treatment. A cohort of twenty-two mice were treated with sunitinib and compared to thirteen control untreated mice, and monitored by DRS/DCS. A reduction in total hemoglobin concentration (THC, p = 0.03), oxygen saturation (SO2, p = 0.03) and blood flow index (BFI, p = 0.02) was observed over the treatment course. Early changes in tumor microvascular blood flow and total hemoglobin concentration were correlated with the final microvessel density (p = 0.014) and tumor weight (p = 0.024), respectively. Higher pre-treatment tumor microvascular blood flow was observed in non-responder mice with respect to responder mice, which was statistically predictive of the tumor intrinsic resistance (p = 0.01). This hybrid diffuse optical technique provides a method for predicting tumor intrinsic resistance to antiangiogenic therapy and could be used as predictive biomarker of response to antiangiogenic therapies in pre-clinical models.
{"title":"Prediction of the response to antiangiogenic sunitinib therapy by non-invasive hybrid diffuse optics in renal cell carcinoma.","authors":"Miguel Mireles, Gabriela Jiménez-Valerio, Jordi Morales-Dalmau, Johannes D Johansson, Mar Martínez-Lozano, Ernesto E Vidal-Rosas, Valentí Navarro-Pérez, David R Busch, Oriol Casanovas, Turgut Durduran, Clara Vilches","doi":"10.1364/BOE.532052","DOIUrl":"https://doi.org/10.1364/BOE.532052","url":null,"abstract":"<p><p>In this work, broadband diffuse reflectance spectroscopy (DRS) and diffuse correlation spectroscopy (DCS) were used to quantify deep tissue hemodynamics in a patient-derived orthotopic xenograft mouse model of clear cell renal cancer undergoing antiangiogenic treatment. A cohort of twenty-two mice were treated with sunitinib and compared to thirteen control untreated mice, and monitored by DRS/DCS. A reduction in total hemoglobin concentration (THC, p = 0.03), oxygen saturation (SO<sub>2,</sub> p = 0.03) and blood flow index (BFI, p = 0.02) was observed over the treatment course. Early changes in tumor microvascular blood flow and total hemoglobin concentration were correlated with the final microvessel density (p = 0.014) and tumor weight (p = 0.024), respectively. Higher pre-treatment tumor microvascular blood flow was observed in non-responder mice with respect to responder mice, which was statistically predictive of the tumor intrinsic resistance (p = 0.01). This hybrid diffuse optical technique provides a method for predicting tumor intrinsic resistance to antiangiogenic therapy and could be used as predictive biomarker of response to antiangiogenic therapies in pre-clinical models.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"15 10","pages":"5773-5789"},"PeriodicalIF":2.9,"publicationDate":"2024-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11482189/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142457273","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-06eCollection Date: 2024-10-01DOI: 10.1364/BOE.530993
Giulia Mansutti, Martin Villiger, Brett E Bouma, Néstor Uribe-Patarroyo
We propose a new simple and cost-effective optical imaging technique, full-field amplitude speckle decorrelation angiography (FASDA), capable of visualizing skin microvasculature with high resolution, and sensitive to small, superficial vessels with slow blood flow and larger, deeper vessels with faster blood flow. FASDA makes use of a laser source with limited temporal coherence, can be implemented with cameras with conventional frame rates, and does not require raster scanning. The proposed imaging technique is based on the simultaneous evaluation of two metrics: the blood flow index, a contrast-based metric used in laser speckle contrast imaging, and the adaptive speckle decorrelation index (ASDI), a new metric that we defined based on the second-order autocorrelation function that considers the limited speckle modulation that occurs in partially-coherent imaging. We demonstrate excellent delineation of small, superficial vessels with slow blood flow in skin nevi using ASDI and larger, deeper vessels with faster blood flow using BFI, providing a powerful new tool for the imaging of microvasculature with significantly lower hardware complexity and cost than other optical imaging techniques.
{"title":"Full-field amplitude speckle decorrelation angiography.","authors":"Giulia Mansutti, Martin Villiger, Brett E Bouma, Néstor Uribe-Patarroyo","doi":"10.1364/BOE.530993","DOIUrl":"https://doi.org/10.1364/BOE.530993","url":null,"abstract":"<p><p>We propose a new simple and cost-effective optical imaging technique, full-field amplitude speckle decorrelation angiography (FASDA), capable of visualizing skin microvasculature with high resolution, and sensitive to small, superficial vessels with slow blood flow and larger, deeper vessels with faster blood flow. FASDA makes use of a laser source with limited temporal coherence, can be implemented with cameras with conventional frame rates, and does not require raster scanning. The proposed imaging technique is based on the simultaneous evaluation of two metrics: the blood flow index, a contrast-based metric used in laser speckle contrast imaging, and the adaptive speckle decorrelation index (ASDI), a new metric that we defined based on the second-order autocorrelation function that considers the limited speckle modulation that occurs in partially-coherent imaging. We demonstrate excellent delineation of small, superficial vessels with slow blood flow in skin nevi using ASDI and larger, deeper vessels with faster blood flow using BFI, providing a powerful new tool for the imaging of microvasculature with significantly lower hardware complexity and cost than other optical imaging techniques.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"15 10","pages":"5756-5772"},"PeriodicalIF":2.9,"publicationDate":"2024-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11482163/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142457255","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Optical coherence tomography (OCT) can be an important tool for non-invasive dermatological evaluation, providing useful data on epidermal integrity for diagnosing skin diseases. Despite its benefits, OCT's utility is limited by the challenges of accurate, fast epidermal segmentation due to the skin morphological diversity. To address this, we introduce a lightweight segmentation network (LS-Net), a novel deep learning model that combines the robust local feature extraction abilities of Convolution Neural Network and the long-term information processing capabilities of Vision Transformer. LS-Net has a depth-wise convolutional transformer for enhanced spatial contextualization and a squeeze-and-excitation block for feature recalibration, ensuring precise segmentation while maintaining computational efficiency. Our network outperforms existing methods, demonstrating high segmentation accuracy (mean Dice: 0.9624 and mean IoU: 0.9468) with significantly reduced computational demands (floating point operations: 1.131 G). We further validate LS-Net on our acquired dataset, showing its effectiveness in various skin sites (e.g., face, palm) under realistic clinical conditions. This model promises to enhance the diagnostic capabilities of OCT, making it a valuable tool for dermatological practice.
光学相干断层扫描(OCT)是一种非侵入性皮肤病评估的重要工具,可为诊断皮肤病提供有关表皮完整性的有用数据。尽管光学相干断层扫描具有诸多优点,但由于皮肤形态的多样性,它在准确、快速地分割表皮方面所面临的挑战限制了它的实用性。为解决这一问题,我们引入了轻量级分割网络(LS-Net),这是一种新型深度学习模型,结合了卷积神经网络的稳健局部特征提取能力和视觉转换器的长期信息处理能力。LS-Net 有一个深度卷积变换器,用于增强空间上下文关联,还有一个挤压-激发块,用于特征重新校准,确保精确分割的同时保持计算效率。我们的网络优于现有的方法,显示出较高的分割精度(平均 Dice:0.9624,平均 IoU:0.9468),同时显著降低了计算需求(浮点运算:1.131 G)。我们在获得的数据集上进一步验证了 LS-Net,显示了它在现实临床条件下对不同皮肤部位(如面部、手掌)的有效性。该模型有望提高 OCT 的诊断能力,使其成为皮肤科实践中的重要工具。
{"title":"LS-Net: lightweight segmentation network for dermatological epidermal segmentation in optical coherence tomography imaging.","authors":"Jinpeng Liao, Tianyu Zhang, Chunhui Li, Zhihong Huang","doi":"10.1364/BOE.529662","DOIUrl":"https://doi.org/10.1364/BOE.529662","url":null,"abstract":"<p><p>Optical coherence tomography (OCT) can be an important tool for non-invasive dermatological evaluation, providing useful data on epidermal integrity for diagnosing skin diseases. Despite its benefits, OCT's utility is limited by the challenges of accurate, fast epidermal segmentation due to the skin morphological diversity. To address this, we introduce a lightweight segmentation network (LS-Net), a novel deep learning model that combines the robust local feature extraction abilities of Convolution Neural Network and the long-term information processing capabilities of Vision Transformer. LS-Net has a depth-wise convolutional transformer for enhanced spatial contextualization and a squeeze-and-excitation block for feature recalibration, ensuring precise segmentation while maintaining computational efficiency. Our network outperforms existing methods, demonstrating high segmentation accuracy (mean Dice: 0.9624 and mean IoU: 0.9468) with significantly reduced computational demands (floating point operations: 1.131 G). We further validate LS-Net on our acquired dataset, showing its effectiveness in various skin sites (e.g., face, palm) under realistic clinical conditions. This model promises to enhance the diagnostic capabilities of OCT, making it a valuable tool for dermatological practice.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"15 10","pages":"5723-5738"},"PeriodicalIF":2.9,"publicationDate":"2024-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11482159/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142485809","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-06eCollection Date: 2024-10-01DOI: 10.1364/BOE.535028
Chongyun Wang, Wah Shing Lam, Hanjin Huang, Han Zhao, Chunqi Zhang, Dong Sun
The development of microrobots for biomedical applications has enabled tasks such as targeted drug delivery, minimally invasive surgeries, and precise diagnostics. However, effective in vivo navigation and control remain challenging due to their small size and complex body environment. Photoacoustic (PA) and ultrasound (US) imaging techniques, which offer high contrast, high resolution, and deep tissue penetration, are integrated to enhance microrobot visualization and tracking. Traditional imaging systems have a narrow effective illumination area, suffer from severe reflection artifacts, and are affected by strong electromagnetic fields. To address this, we present an illumination-adjustable PA and harmonic US imaging system with a customized pushrod mechanism for real-time focus adjustment. Experiments demonstrate high-resolution imaging and accurate microrobot positioning, showcasing the potential for biomedical applications, especially in minimally invasive procedures.
用于生物医学应用的微型机器人的开发使定向给药、微创手术和精确诊断等任务成为可能。然而,由于微型机器人体积小、体内环境复杂,有效的体内导航和控制仍具有挑战性。光声(PA)和超声(US)成像技术具有高对比度、高分辨率和深层组织穿透能力,可用于增强微型机器人的可视化和跟踪能力。传统成像系统的有效照明区域较窄,存在严重的反射伪影,并受到强电磁场的影响。针对这一问题,我们提出了一种照明可调的 PA 和谐波 US 成像系统,该系统采用定制的推杆机制,可实时调整焦距。实验证明了高分辨率成像和精确的微型机器人定位,展示了生物医学应用的潜力,尤其是在微创手术中。
{"title":"Illumination-adjustable photoacoustic and harmonic ultrasound for tracking magnetically driven microrobots.","authors":"Chongyun Wang, Wah Shing Lam, Hanjin Huang, Han Zhao, Chunqi Zhang, Dong Sun","doi":"10.1364/BOE.535028","DOIUrl":"https://doi.org/10.1364/BOE.535028","url":null,"abstract":"<p><p>The development of microrobots for biomedical applications has enabled tasks such as targeted drug delivery, minimally invasive surgeries, and precise diagnostics. However, effective in vivo navigation and control remain challenging due to their small size and complex body environment. Photoacoustic (PA) and ultrasound (US) imaging techniques, which offer high contrast, high resolution, and deep tissue penetration, are integrated to enhance microrobot visualization and tracking. Traditional imaging systems have a narrow effective illumination area, suffer from severe reflection artifacts, and are affected by strong electromagnetic fields. To address this, we present an illumination-adjustable PA and harmonic US imaging system with a customized pushrod mechanism for real-time focus adjustment. Experiments demonstrate high-resolution imaging and accurate microrobot positioning, showcasing the potential for biomedical applications, especially in minimally invasive procedures.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"15 10","pages":"5790-5802"},"PeriodicalIF":2.9,"publicationDate":"2024-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11482187/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142457256","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-06eCollection Date: 2024-10-01DOI: 10.1364/BOE.538148
Shi Zhao, Haowen Zhou, Siyu Steven Lin, Ruizhi Cao, Changhuei Yang
Whole slide imaging provides a wide field-of-view (FOV) across cross-sections of biopsy or surgery samples, significantly facilitating pathological analysis and clinical diagnosis. Such high-quality images that enable detailed visualization of cellular and tissue structures are essential for effective patient care and treatment planning. To obtain such high-quality images for pathology applications, there is a need for scanners with high spatial bandwidth products, free from aberrations, and without the requirement for z-scanning. Here we report a whole slide imaging system based on angular ptychographic imaging with a closed-form solution (WSI-APIC), which offers efficient, tens-of-gigapixels, large-FOV, aberration-free imaging. WSI-APIC utilizes oblique incoherent illumination for initial high-level segmentation, thereby bypassing unnecessary scanning of the background regions and enhancing image acquisition efficiency. A GPU-accelerated APIC algorithm analytically reconstructs phase images with effective digital aberration corrections and improved optical resolutions. Moreover, an auto-stitching technique based on scale-invariant feature transform ensures the seamless concatenation of whole slide phase images. In our experiment, WSI-APIC achieved an optical resolution of 772 nm using a 10×/0.25 NA objective lens and captures 80-gigapixel aberration-free phase images for a standard 76.2 mm × 25.4 mm microscopic slide.
全切片成像为活检或手术样本的横截面提供了宽视场(FOV),极大地促进了病理分析和临床诊断。这种能详细显示细胞和组织结构的高质量图像对于有效的病人护理和治疗计划至关重要。要在病理学应用中获得如此高质量的图像,就需要具有高空间带宽产品、无畸变且无需 Z 扫描的扫描仪。在此,我们报告了一种基于角平片成像的全玻片成像系统(WSI-APIC),该系统采用封闭式解决方案,可提供高效、数十万像素、大视场、无像差的成像。WSI-APIC 利用斜向非相干照明进行初始高级分割,从而绕过了对背景区域的不必要扫描,提高了图像采集效率。由 GPU 加速的 APIC 算法通过有效的数字像差校正和改进的光学分辨率分析重建相位图像。此外,基于尺度不变特征变换的自动缝合技术确保了整张玻片相位图像的无缝连接。在我们的实验中,WSI-APIC 使用 10×/0.25 NA 物镜实现了 772 nm 的光学分辨率,并为 76.2 mm × 25.4 mm 的标准显微载玻片捕获了 80 千兆像素的无像差相位图像。
{"title":"Efficient, gigapixel-scale, aberration-free whole slide scanner using angular ptychographic imaging with closed-form solution.","authors":"Shi Zhao, Haowen Zhou, Siyu Steven Lin, Ruizhi Cao, Changhuei Yang","doi":"10.1364/BOE.538148","DOIUrl":"https://doi.org/10.1364/BOE.538148","url":null,"abstract":"<p><p>Whole slide imaging provides a wide field-of-view (FOV) across cross-sections of biopsy or surgery samples, significantly facilitating pathological analysis and clinical diagnosis. Such high-quality images that enable detailed visualization of cellular and tissue structures are essential for effective patient care and treatment planning. To obtain such high-quality images for pathology applications, there is a need for scanners with high spatial bandwidth products, free from aberrations, and without the requirement for z-scanning. Here we report a whole slide imaging system based on angular ptychographic imaging with a closed-form solution (WSI-APIC), which offers efficient, tens-of-gigapixels, large-FOV, aberration-free imaging. WSI-APIC utilizes oblique incoherent illumination for initial high-level segmentation, thereby bypassing unnecessary scanning of the background regions and enhancing image acquisition efficiency. A GPU-accelerated APIC algorithm analytically reconstructs phase images with effective digital aberration corrections and improved optical resolutions. Moreover, an auto-stitching technique based on scale-invariant feature transform ensures the seamless concatenation of whole slide phase images. In our experiment, WSI-APIC achieved an optical resolution of 772 nm using a 10×/0.25 NA objective lens and captures 80-gigapixel aberration-free phase images for a standard 76.2 mm × 25.4 mm microscopic slide.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"15 10","pages":"5739-5755"},"PeriodicalIF":2.9,"publicationDate":"2024-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11482188/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142457249","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-05eCollection Date: 2024-10-01DOI: 10.1364/BOE.531388
Kodchakorn Khemtonglang, Weinan Liu, Hankeun Lee, Weijing Wang, Siyan Li, Zhao Yuan Li, Skye Shepherd, Yihong Yang, Diego G Diel, Ying Fang, Brian T Cunningham
We report the design, development, and characterization of a miniaturized version of the photonic resonator absorption microscope (PRAM Mini), whose cost, size, and functionality are compatible with point-of-care (POC) diagnostic assay applications. Compared to previously reported versions of the PRAM instrument, the PRAM Mini components are integrated within an optical framework comprised of an acrylic breadboard and plastic alignment fixtures. The instrument incorporates a Raspberry Pi microprocessor and Bluetooth communication circuit board for wireless control and data connection to a linked smartphone. PRAM takes advantage of enhanced optical absorption of ∼80 nm diameter gold nanoparticles (AuNP) whose localized surface plasmon resonance overlaps with the ∼625 nm resonant reflection wavelength of a photonic crystal (PC) surface. When illuminated with wide-field low-intensity collimated light from a ∼617 nm wavelength red LED, each AuNP linked to the PC surface results in locally reduced reflection intensity, which is visualized by observing dark spots in the PC-reflected image with an inexpensive CMOS image sensor. Each AuNP in the image field of view can be easily counted with digital resolution. We report upon the selection of optical/electronic components, image processing algorithm, and contrast achieved for single AuNP detection. The instrument is operated via a wireless connection to a linked mobile device using a custom-developed software application that runs on an Android smartphone. As a representative POC application, we used the PRAM Mini as the detection instrument for an assay that measures the presence of antibodies against SARS-CoV-2 infection in cat serum samples, where each dark spot in the image represents a complex between one immobilized viral antigen, one antibody molecule, and one AuNP tag. With dimensions of 23 × 21 × 10 cm3, the PRAM Mini offers a compact detection instrument for POC diagnostics.
我们报告了小型化光子谐振器吸收显微镜(PRAM Mini)的设计、开发和表征,其成本、尺寸和功能与护理点(POC)诊断检测应用兼容。与之前报道的 PRAM 仪器版本相比,PRAM Mini 组件集成在一个由丙烯酸面包板和塑料校准夹具组成的光学框架内。该仪器集成了 Raspberry Pi 微处理器和蓝牙通信电路板,用于无线控制和与智能手机的数据连接。PRAM 利用了直径为 80 纳米的金纳米粒子(AuNP)的增强光学吸收,其局部表面等离子体共振与光子晶体(PC)表面的 625 纳米共振反射波长重叠。当用波长为 617 nm 的红色 LED 发出的宽场低强度准直光照射时,与 PC 表面相连的每个 AuNP 都会导致局部反射强度降低。图像视野中的每个 AuNP 都能以数字分辨率轻松计数。我们报告了光学/电子元件的选择、图像处理算法以及单个 AuNP 检测的对比度。该仪器通过无线连接与移动设备相连,使用定制开发的软件应用程序在安卓智能手机上运行。作为具有代表性的 POC 应用,我们使用 PRAM Mini 作为检测仪器,测定猫血清样本中是否存在抗 SARS-CoV-2 感染的抗体,图像中的每个暗点代表一个固定的病毒抗原、一个抗体分子和一个 AuNP 标签之间的复合物。PRAM Mini 的尺寸为 23 × 21 × 10 cm3,是用于 POC 诊断的紧凑型检测仪器。
{"title":"Portable, smartphone-linked, and miniaturized photonic resonator absorption microscope (PRAM Mini) for point-of-care diagnostics.","authors":"Kodchakorn Khemtonglang, Weinan Liu, Hankeun Lee, Weijing Wang, Siyan Li, Zhao Yuan Li, Skye Shepherd, Yihong Yang, Diego G Diel, Ying Fang, Brian T Cunningham","doi":"10.1364/BOE.531388","DOIUrl":"https://doi.org/10.1364/BOE.531388","url":null,"abstract":"<p><p>We report the design, development, and characterization of a miniaturized version of the photonic resonator absorption microscope (PRAM Mini), whose cost, size, and functionality are compatible with point-of-care (POC) diagnostic assay applications. Compared to previously reported versions of the PRAM instrument, the PRAM Mini components are integrated within an optical framework comprised of an acrylic breadboard and plastic alignment fixtures. The instrument incorporates a Raspberry Pi microprocessor and Bluetooth communication circuit board for wireless control and data connection to a linked smartphone. PRAM takes advantage of enhanced optical absorption of ∼80 nm diameter gold nanoparticles (AuNP) whose localized surface plasmon resonance overlaps with the ∼625 nm resonant reflection wavelength of a photonic crystal (PC) surface. When illuminated with wide-field low-intensity collimated light from a ∼617 nm wavelength red LED, each AuNP linked to the PC surface results in locally reduced reflection intensity, which is visualized by observing dark spots in the PC-reflected image with an inexpensive CMOS image sensor. Each AuNP in the image field of view can be easily counted with digital resolution. We report upon the selection of optical/electronic components, image processing algorithm, and contrast achieved for single AuNP detection. The instrument is operated via a wireless connection to a linked mobile device using a custom-developed software application that runs on an Android smartphone. As a representative POC application, we used the PRAM Mini as the detection instrument for an assay that measures the presence of antibodies against SARS-CoV-2 infection in cat serum samples, where each dark spot in the image represents a complex between one immobilized viral antigen, one antibody molecule, and one AuNP tag. With dimensions of 23 × 21 × 10 cm<sup>3</sup>, the PRAM Mini offers a compact detection instrument for POC diagnostics.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"15 10","pages":"5691-5705"},"PeriodicalIF":2.9,"publicationDate":"2024-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11482178/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142485844","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-05eCollection Date: 2024-10-01DOI: 10.1364/BOE.537828
Margherita Vaselli, Ruben Y Gabriels, Iris Schmidt, Andrea J Sterkenburg, Gursah Kats-Ugurlu, Wouter B Nagengast, Johannes F de Boer
Early detection of (pre)malignant esophageal lesions is critical to improve esophageal cancer morbidity and mortality rates. In patients with advanced esophageal adenocarcinoma (EAC) who undergo neoadjuvant chemoradiation therapy, the efficacy of therapy could be optimized and unnecessary surgery prevented by the reliable assessment of residual tumors after therapy. Optical coherence tomography (OCT) provides structural images at a (sub)-cellular level and has the potential to visualize morphological changes in tissue. However, OCT lacks molecular imaging contrast, a feature that enables the study of biological processes at a cellular level and can enhance esophageal cancer diagnostic accuracy. We combined OCT with near-infrared fluorescence molecular imaging using fluorescently labelled antibodies (immuno-OCT). The main goal of this proof of principle study is to investigate the feasibility of immuno-OCT for esophageal cancer imaging. We aim to assess whether the sensitivity of our immuno-OCT device is sufficient to detect the tracer uptake using an imaging dose (∼100 times smaller than a dose with therapeutic effects) of a targeted fluorescent agent. The feasibility of immuno-OCT was demonstrated ex-vivo on dysplastic lesions resected from Barrett's patients and on esophageal specimens resected from patients with advanced EAC, who were respectively topically and intravenously administrated with the tracer bevacizumab-800CW. The detection sensitivity of our system (0.3 nM) is sufficient to detect increased tracer uptake with micrometer resolution using an imaging dose of labelled antibodies. Moreover, the absence of layered structures that are typical of normal esophageal tissue observed in OCT images of dysplastic/malignant esophageal lesions may further aid their detection. Based on our preliminary results, immuno-OCT could improve the detection of dysplastic esophageal lesions.
早期发现食管(恶性前)病变对提高食管癌的发病率和死亡率至关重要。对于接受新辅助化放疗的晚期食管腺癌(EAC)患者来说,通过对治疗后残留肿瘤的可靠评估,可以优化疗效并避免不必要的手术。光学相干断层扫描(OCT)可提供(亚)细胞水平的结构图像,具有观察组织形态变化的潜力。然而,光学相干断层扫描缺乏分子成像对比度,而分子成像对比度可在细胞水平研究生物过程,并提高食管癌诊断的准确性。我们将 OCT 与使用荧光标记抗体的近红外荧光分子成像(免疫 OCT)相结合。这项原理验证研究的主要目的是调查免疫 OCT 用于食道癌成像的可行性。我们的目的是评估我们的免疫 OCT 设备的灵敏度是否足以检测使用成像剂量(比具有治疗效果的剂量小 100 倍)的靶向荧光剂对示踪剂的吸收。免疫-OCT的可行性已在巴雷特患者切除的发育不良病灶和晚期EAC患者切除的食管标本上进行了体外验证,这些患者分别通过局部和静脉注射了示踪剂贝伐珠单抗-800CW。我们系统的检测灵敏度(0.3 nM)足以利用成像剂量的标记抗体以微米分辨率检测示踪剂摄取的增加。此外,在食管发育不良/恶性病变的 OCT 图像中观察到正常食管组织没有典型的分层结构,这可能有助于进一步检测这些病变。根据我们的初步结果,免疫 OCT 可以改善对食管发育不良病变的检测。
{"title":"Ex vivo optical coherence tomography combined with near infrared targeted fluorescence: towards <i>in-vivo</i> esophageal cancer detection.","authors":"Margherita Vaselli, Ruben Y Gabriels, Iris Schmidt, Andrea J Sterkenburg, Gursah Kats-Ugurlu, Wouter B Nagengast, Johannes F de Boer","doi":"10.1364/BOE.537828","DOIUrl":"https://doi.org/10.1364/BOE.537828","url":null,"abstract":"<p><p>Early detection of (pre)malignant esophageal lesions is critical to improve esophageal cancer morbidity and mortality rates. In patients with advanced esophageal adenocarcinoma (EAC) who undergo neoadjuvant chemoradiation therapy, the efficacy of therapy could be optimized and unnecessary surgery prevented by the reliable assessment of residual tumors after therapy. Optical coherence tomography (OCT) provides structural images at a (sub)-cellular level and has the potential to visualize morphological changes in tissue. However, OCT lacks molecular imaging contrast, a feature that enables the study of biological processes at a cellular level and can enhance esophageal cancer diagnostic accuracy. We combined OCT with near-infrared fluorescence molecular imaging using fluorescently labelled antibodies (immuno-OCT). The main goal of this proof of principle study is to investigate the feasibility of immuno-OCT for esophageal cancer imaging. We aim to assess whether the sensitivity of our immuno-OCT device is sufficient to detect the tracer uptake using an imaging dose (∼100 times smaller than a dose with therapeutic effects) of a targeted fluorescent agent. The feasibility of immuno-OCT was demonstrated <i>ex-vivo</i> on dysplastic lesions resected from Barrett's patients and on esophageal specimens resected from patients with advanced EAC, who were respectively topically and intravenously administrated with the tracer bevacizumab-800CW. The detection sensitivity of our system (0.3 nM) is sufficient to detect increased tracer uptake with micrometer resolution using an imaging dose of labelled antibodies. Moreover, the absence of layered structures that are typical of normal esophageal tissue observed in OCT images of dysplastic/malignant esophageal lesions may further aid their detection. Based on our preliminary results, immuno-OCT could improve the detection of dysplastic esophageal lesions.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"15 10","pages":"5706-5722"},"PeriodicalIF":2.9,"publicationDate":"2024-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11482167/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142457251","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}