Pub Date : 2025-12-23eCollection Date: 2026-01-01DOI: 10.1364/BOE.580168
Wojciech Krauze, Martyna Mazur, Arkadiusz Kuś, Aleksandra Piekarska
Transmission optical coherence tomography (OCT) enables analysis of biological specimens in vitro through the detection of forward-scattered light. Up to now, transmission OCT has been considered a technique that cannot directly retrieve quantitative phase and is thus a qualitative method. In this paper, we present qtOCT, a novel quantitative transmission optical coherence tomography method. Unlike existing approaches, qtOCT allows for a direct, easy, fast, and rigorous retrieval of 2D integrated phase information from transmission full-field swept-source OCT measurements. Our method is based on coherence gating and allows user-defined temporal measurement range selection, making it potentially suitable for analyzing multiple-scattering samples. In the weak-scattering regime, we demonstrate high consistency between qtOCT and digital holographic microscopy phase images, whereas in the multiple-scattering regime, we show the superiority of qtOCT. This approach enhances transmission OCT capabilities, positioning it as a viable alternative to existing quantitative phase imaging techniques.
{"title":"qtOCT: quantitative transmission optical coherence tomography.","authors":"Wojciech Krauze, Martyna Mazur, Arkadiusz Kuś, Aleksandra Piekarska","doi":"10.1364/BOE.580168","DOIUrl":"10.1364/BOE.580168","url":null,"abstract":"<p><p>Transmission optical coherence tomography (OCT) enables analysis of biological specimens in vitro through the detection of forward-scattered light. Up to now, transmission OCT has been considered a technique that cannot directly retrieve quantitative phase and is thus a qualitative method. In this paper, we present qtOCT, a novel quantitative transmission optical coherence tomography method. Unlike existing approaches, qtOCT allows for a direct, easy, fast, and rigorous retrieval of 2D integrated phase information from transmission full-field swept-source OCT measurements. Our method is based on coherence gating and allows user-defined temporal measurement range selection, making it potentially suitable for analyzing multiple-scattering samples. In the weak-scattering regime, we demonstrate high consistency between qtOCT and digital holographic microscopy phase images, whereas in the multiple-scattering regime, we show the superiority of qtOCT. This approach enhances transmission OCT capabilities, positioning it as a viable alternative to existing quantitative phase imaging techniques.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"17 1","pages":"489-498"},"PeriodicalIF":3.2,"publicationDate":"2025-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12795430/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145965264","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-23eCollection Date: 2026-01-01DOI: 10.1364/BOE.585777
Kate Grieve, Kostadinka Bizheva, Gereon Hüttmann, Yoshiaki Yasuno
The guest editors introduce a feature issue on the topic of imaging of tissue and cell dynamics.
客座编辑介绍了一个关于组织和细胞动力学成像主题的专题问题。
{"title":"Imaging of Tissue and Cell Dynamics: introduction to the feature issue.","authors":"Kate Grieve, Kostadinka Bizheva, Gereon Hüttmann, Yoshiaki Yasuno","doi":"10.1364/BOE.585777","DOIUrl":"10.1364/BOE.585777","url":null,"abstract":"<p><p>The guest editors introduce a feature issue on the topic of imaging of tissue and cell dynamics.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"17 1","pages":"499-501"},"PeriodicalIF":3.2,"publicationDate":"2025-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12795436/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145965119","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lung cancer is the leading cause of cancer-related mortality worldwide, making early screening crucial for improving patient survival. In recent years, exosomes have garnered significant attention as promising biomarkers for the detection of lung cancer. Their easy isolation from body fluids, such as blood and urine, makes them a perfect sample for liquid biopsy, while liquid biopsy is widely used in clinical research. Droplet coating deposition Raman (DCDR) spectroscopy is well-suited for exosome detection due to its molecular fingerprints, non-invasiveness, low sample volume requirements, and minimal/no sample preparation. In this study, we combined DCDR technology with machine learning algorithms to screen for lung cancer based on plasma-derived exosomes. High-quality exosomes were isolated from clinical blood samples via ultracentrifugation, exhibiting a characteristic cup-shaped morphology with an average diameter of 130 nm and expressing canonical exosome markers (CD63 and CD81). Although subtle differences were observed between the Raman spectra of exosomes from lung cancer patients and from healthy individuals, principal component analysis (PCA) revealed the presence of a batch effect across the samples. To enable diagnosis while minimizing the impact of batch effect, the support vector machine (SVM) model outperformed the linear discriminant analysis (LDA) model, achieving 95.60% accuracy (area under the curve (AUC) = 0.996) at the spectrum level and 100% accuracy at the patient level. These results demonstrate that Raman spectroscopy is an up-and-coming tool for rapid lung cancer screening, offering the advantages of low cost, ease of operation, low sample volume requirements, and high speed.
{"title":"Lung cancer screening based on plasma-derived exosomes via droplet coating deposition Raman spectroscopy and machine learning.","authors":"Yuyi Li, Shuting Xiao, Jing Huang, Zongze Li, Chunling Pan, Ming Dong, Qiuqiang Zhan","doi":"10.1364/BOE.581880","DOIUrl":"10.1364/BOE.581880","url":null,"abstract":"<p><p>Lung cancer is the leading cause of cancer-related mortality worldwide, making early screening crucial for improving patient survival. In recent years, exosomes have garnered significant attention as promising biomarkers for the detection of lung cancer. Their easy isolation from body fluids, such as blood and urine, makes them a perfect sample for liquid biopsy, while liquid biopsy is widely used in clinical research. Droplet coating deposition Raman (DCDR) spectroscopy is well-suited for exosome detection due to its molecular fingerprints, non-invasiveness, low sample volume requirements, and minimal/no sample preparation. In this study, we combined DCDR technology with machine learning algorithms to screen for lung cancer based on plasma-derived exosomes. High-quality exosomes were isolated from clinical blood samples via ultracentrifugation, exhibiting a characteristic cup-shaped morphology with an average diameter of 130 nm and expressing canonical exosome markers (CD63 and CD81). Although subtle differences were observed between the Raman spectra of exosomes from lung cancer patients and from healthy individuals, principal component analysis (PCA) revealed the presence of a batch effect across the samples. To enable diagnosis while minimizing the impact of batch effect, the support vector machine (SVM) model outperformed the linear discriminant analysis (LDA) model, achieving 95.60% accuracy (area under the curve (AUC) = 0.996) at the spectrum level and 100% accuracy at the patient level. These results demonstrate that Raman spectroscopy is an up-and-coming tool for rapid lung cancer screening, offering the advantages of low cost, ease of operation, low sample volume requirements, and high speed.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"17 1","pages":"447-456"},"PeriodicalIF":3.2,"publicationDate":"2025-12-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12795442/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145965217","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-22eCollection Date: 2026-01-01DOI: 10.1364/BOE.573621
Forest Speed, Alec Teel, Timothy Young, Larry V Baker, Gregory L Futia, Diego Restrepo, Emily A Gibson
We utilize periodic structured illumination with pseudo-HiLo (pHiLo) image reconstruction for in vivo voltage imaging. We demonstrate reduced signal from out-of-focus cells, which contaminates voltage activity for in-focus cells of interest, with pHiLo compared to traditional widefield recordings taken with uniform illumination and pseudo-widefield (pWF) reconstructions. We compare spike peak-to-noise ratio (PNR) and cell-background correlation for time courses extracted using pHiLo and soma-targeted widefield illumination (TI). We discuss tradeoffs between out-of-focus light reduction, signal-to-noise ratio, and temporal resolution for pHiLo in the context of high-speed voltage imaging in awake mice.
{"title":"Voltage imaging with periodic structured illumination.","authors":"Forest Speed, Alec Teel, Timothy Young, Larry V Baker, Gregory L Futia, Diego Restrepo, Emily A Gibson","doi":"10.1364/BOE.573621","DOIUrl":"10.1364/BOE.573621","url":null,"abstract":"<p><p>We utilize periodic structured illumination with pseudo-HiLo (pHiLo) image reconstruction for in vivo voltage imaging. We demonstrate reduced signal from out-of-focus cells, which contaminates voltage activity for in-focus cells of interest, with pHiLo compared to traditional widefield recordings taken with uniform illumination and pseudo-widefield (pWF) reconstructions. We compare spike peak-to-noise ratio (PNR) and cell-background correlation for time courses extracted using pHiLo and soma-targeted widefield illumination (TI). We discuss tradeoffs between out-of-focus light reduction, signal-to-noise ratio, and temporal resolution for pHiLo in the context of high-speed voltage imaging in awake mice.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"17 1","pages":"457-470"},"PeriodicalIF":3.2,"publicationDate":"2025-12-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12795438/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145964934","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-22eCollection Date: 2026-01-01DOI: 10.1364/BOE.575278
Alexander J Tate, Gary C Mouradian, Daniel M Lipinski
Laser speckle contrast imaging (LSCI) is an under-utilized retinal imaging modality capable of non-invasively generating contrast-free, widefield maps of retinal blood flow from which multiple metrics of retinal hemodynamic function can be derived using relatively simple flood illumination instrumentation. Technical and computational advancements have improved spatiotemporal resolution and data extraction to the extent that three-peak blood flow waveforms, currently unaccounted for in LSCI nomenclature, are consistently revealed in the murine retina. Herein, we utilize a custom LSCI instrument and newly developed analysis pipeline to demonstrate the prevalence of the triphasic blood flow waveform, map timing of its first and third peaks to systole and diastole, respectively, via corroboration with arterial cannulation, and measure basal hemodynamic values for global, arterial, and venous retinal blood flow.
{"title":"Development of a laser speckle contrast imaging analysis pipeline reveals a triphasic retinal blood flow waveform.","authors":"Alexander J Tate, Gary C Mouradian, Daniel M Lipinski","doi":"10.1364/BOE.575278","DOIUrl":"10.1364/BOE.575278","url":null,"abstract":"<p><p>Laser speckle contrast imaging (LSCI) is an under-utilized retinal imaging modality capable of non-invasively generating contrast-free, widefield maps of retinal blood flow from which multiple metrics of retinal hemodynamic function can be derived using relatively simple flood illumination instrumentation. Technical and computational advancements have improved spatiotemporal resolution and data extraction to the extent that three-peak blood flow waveforms, currently unaccounted for in LSCI nomenclature, are consistently revealed in the murine retina. Herein, we utilize a custom LSCI instrument and newly developed analysis pipeline to demonstrate the prevalence of the triphasic blood flow waveform, map timing of its first and third peaks to systole and diastole, respectively, via corroboration with arterial cannulation, and measure basal hemodynamic values for global, arterial, and venous retinal blood flow.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"17 1","pages":"471-488"},"PeriodicalIF":3.2,"publicationDate":"2025-12-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12795439/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145965046","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-19eCollection Date: 2026-01-01DOI: 10.1364/BOE.549285
María Mechó-García, Paulo Fernandes, José Manuel González-Méijome, Miguel Faria-Ribeiro
This study uses a wavefront model to evaluate the effects of contact lenses on retinal image quality (RIQ) as a function of target vergence (TV). Three hundred synthetic eyes were generated using an accommodative wavefront model to simulate the changes in RIQ with accommodation. The synthetic eyes wavefronts were computationally combined using direct wavefront summation with two myopia control CLs. One has a +2.00D treatment zone dual-focus (DF) design (MiSight), and the other has an extended depth of focus (EDOF) design (Mylo). Peak image quality was calculated for the naked eye, with CLs in the relaxed state, and for an accommodative demand of -2.5D. Additionally, the predicted accommodative response (change in accommodative response that maximizes RIQ) was calculated. The mean RIQ (normalized between 0 and 1) for the relaxed eye was 0.42 ± 0.10 in the naked eye. It decreased to 0.26 ± 0.05 with the DF and threefold to 0.15 ± 0.04 with the EDOF. For a TV = -2.5D, the RIQ was 0.34 ± 0.09 in the naked eye condition, 0.24 ± 0.07 with the DF, and 0.19 ± 0.03 with the EDOF. For the TV, the CL's effective add power, the accommodative RIQ showed a secondary peak, with RIQs of 0.08 ± 0.03 (DF) and 0.12 ± 0.04 (EDOF). The theoretical accommodative response (AR) of the naked eye was 2.33 ± 0.20 D, while with the DF and EDOF, it was 2.23 ± 0.39 D and 1.75 ± 0.22 D, respectively. Both myopia control CLs reduced RIQ at a TV of 0 D. At a TV = -2.5D; both lenses caused a secondary peak in the RIQ through focus. With EDOF, the secondary peak was less than 0.1 D from the maximum peak, likely due to its EDOF design. The theoretical AR was reduced with both myopia control CLs, 0.27 D for DF CLs and 0.75 D for EDOF CLs. These results indicate that both lenses impose significant limitations on RIQ and theoretical AR, align with findings from previous studies on subjective optical performance, and validate the model as a useful testing tool.
{"title":"Evaluating retinal image quality for myopia control lenses in a synthetic accommodative wavefront model.","authors":"María Mechó-García, Paulo Fernandes, José Manuel González-Méijome, Miguel Faria-Ribeiro","doi":"10.1364/BOE.549285","DOIUrl":"10.1364/BOE.549285","url":null,"abstract":"<p><p>This study uses a wavefront model to evaluate the effects of contact lenses on retinal image quality (RIQ) as a function of target vergence (TV). Three hundred synthetic eyes were generated using an accommodative wavefront model to simulate the changes in RIQ with accommodation. The synthetic eyes wavefronts were computationally combined using direct wavefront summation with two myopia control CLs. One has a +2.00D treatment zone dual-focus (DF) design (MiSight), and the other has an extended depth of focus (EDOF) design (Mylo). Peak image quality was calculated for the naked eye, with CLs in the relaxed state, and for an accommodative demand of -2.5D. Additionally, the predicted accommodative response (change in accommodative response that maximizes RIQ) was calculated. The mean RIQ (normalized between 0 and 1) for the relaxed eye was 0.42 ± 0.10 in the naked eye. It decreased to 0.26 ± 0.05 with the DF and threefold to 0.15 ± 0.04 with the EDOF. For a TV = -2.5D, the RIQ was 0.34 ± 0.09 in the naked eye condition, 0.24 ± 0.07 with the DF, and 0.19 ± 0.03 with the EDOF. For the TV, the CL's effective add power, the accommodative RIQ showed a secondary peak, with RIQs of 0.08 ± 0.03 (DF) and 0.12 ± 0.04 (EDOF). The theoretical accommodative response (AR) of the naked eye was 2.33 ± 0.20 D, while with the DF and EDOF, it was 2.23 ± 0.39 D and 1.75 ± 0.22 D, respectively. Both myopia control CLs reduced RIQ at a TV of 0 D. At a TV = -2.5D; both lenses caused a secondary peak in the RIQ through focus. With EDOF, the secondary peak was less than 0.1 D from the maximum peak, likely due to its EDOF design. The theoretical AR was reduced with both myopia control CLs, 0.27 D for DF CLs and 0.75 D for EDOF CLs. These results indicate that both lenses impose significant limitations on RIQ and theoretical AR, align with findings from previous studies on subjective optical performance, and validate the model as a useful testing tool.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"17 1","pages":"394-404"},"PeriodicalIF":3.2,"publicationDate":"2025-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12795444/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145965035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-19eCollection Date: 2026-01-01DOI: 10.1364/BOE.577790
Arwa Arrashoud, Morgan Nemeth, Kazuhiro Kurokawa
We have developed an AO-OCT-based method to characterize microscopic vasodilatory responses of peripapillary major retinal artery (ppRA) to the focal luminous flicker stimulation of peripheral retinal neurons (>15° temporal to the fovea) with various mean illuminance levels, frequencies, and spatial patterns in the living human eye. The results have demonstrated that our proposed method can effectively measure transient, microscopic vasodilatory responses of the ppRA to the focal flicker stimulation, which increased monotonically with mean illuminance levels (1, 5 and 11lx), and exhibited frequency band-pass-like behavior (2, 5, 10, 15, 20 and 30 Hz) consistent with expected increases in the activities of retinal ganglion cells (RGCs) and their associated axons. We also found that the proposed method can be used to measure the spatial interdependency of their neurovascular responses: superior arcuate ppRA response to the superior-temporal flicker was 58% greater than that to the inferior-temporal flicker, and the inferior arcuate ppRA response to the inferior-temporal flicker was 86% greater than that to the superior-temporal flicker. Collectively, these results indicate that, using the proposed method, we can now test the hypothesis that major retinal arteries respond in an orchestrated manner to increased firing activities of RGCs and their associated axons, by accounting for the spatial coordinates between the stimulated neurons and the ppRA arcs in the living human eye.
{"title":"Investigating neurovascular responses of the peripapillary retinal artery to focal flicker stimulation of temporal retinal neurons in the living human eye using AO-OCT.","authors":"Arwa Arrashoud, Morgan Nemeth, Kazuhiro Kurokawa","doi":"10.1364/BOE.577790","DOIUrl":"10.1364/BOE.577790","url":null,"abstract":"<p><p>We have developed an AO-OCT-based method to characterize microscopic vasodilatory responses of peripapillary major retinal artery (ppRA) to the focal luminous flicker stimulation of peripheral retinal neurons (>15<sup>°</sup> temporal to the fovea) with various mean illuminance levels, frequencies, and spatial patterns in the living human eye. The results have demonstrated that our proposed method can effectively measure transient, microscopic vasodilatory responses of the ppRA to the focal flicker stimulation, which increased monotonically with mean illuminance levels (1, 5 and 11lx), and exhibited frequency band-pass-like behavior (2, 5, 10, 15, 20 and 30 Hz) consistent with expected increases in the activities of retinal ganglion cells (RGCs) and their associated axons. We also found that the proposed method can be used to measure the spatial interdependency of their neurovascular responses: superior arcuate ppRA response to the superior-temporal flicker was 58% greater than that to the inferior-temporal flicker, and the inferior arcuate ppRA response to the inferior-temporal flicker was 86% greater than that to the superior-temporal flicker. Collectively, these results indicate that, using the proposed method, we can now test the hypothesis that major retinal arteries respond in an orchestrated manner to increased firing activities of RGCs and their associated axons, by accounting for the spatial coordinates between the stimulated neurons and the ppRA arcs in the living human eye.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"17 1","pages":"427-446"},"PeriodicalIF":3.2,"publicationDate":"2025-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12795437/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145965156","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-19eCollection Date: 2026-01-01DOI: 10.1364/BOE.579020
Georg Ladurner, Conrad W Merkle, Lucas May, Sybren Worm, Yash Patel, Maria Varaka, Magdalena Daurer, Laurenz Jauk, Roland Rabl, Philipp Königshofer, Gerhard Garhöfer, Manuela Prokesch, Bernhard Baumann
The retinal phenotype of Alzheimer's disease (AD), its connection to spatial memory, and the influence of sex on the phenotype are poorly understood. Here, we investigate the retina and spatial memory of 5xFAD mouse models of AD by measuring retinal and behavioral parameters. A custom-built optical coherence tomography (OCT) system is used to image the retina of 32 transgenic and 32 non-transgenic 5xFAD mice over the course of 6 months (3-9 months of age). The Morris water maze (MWM) test was performed to examine correlations between the retinal and spatial memory phenotype of the mouse model. Total retinal and inner retinal layer thickness increased slightly over the measurement period, while outer retinal layer and retinal nerve fiber layer thickness showed no significant change. The correlation analysis between MWM and layer thickness data revealed a positive correlation between inner nuclear layer thickness and spatial memory capabilities. OCT and MWM data revealed sex-based differences in the retinal phenotype of the 5xFAD mouse model, with changes in retinal thickness in different stages of the study and dissimilar correlations between retinal and spatial memory phenotype.
阿尔茨海默病(AD)的视网膜表型,其与空间记忆的联系,以及性别对表型的影响尚不清楚。在这里,我们通过测量视网膜和行为参数来研究5xFAD AD小鼠模型的视网膜和空间记忆。使用定制的光学相干断层扫描(OCT)系统对32只转基因和32只非转基因5xFAD小鼠的视网膜进行了6个月(3-9个月)的成像。Morris水迷宫(Morris water maze, MWM)检验小鼠视网膜与空间记忆表型之间的相关性。测量期间视网膜总厚度和视网膜内层厚度略有增加,而视网膜外层和视网膜神经纤维层厚度无明显变化。核心层厚度与核心层厚度的相关分析表明,核心层厚度与核心层空间记忆能力呈正相关。OCT和MWM数据揭示了5xFAD小鼠模型视网膜表型的性别差异,视网膜厚度在研究的不同阶段发生变化,视网膜与空间记忆表型之间存在不同的相关性。
{"title":"Longitudinal investigation of spatial memory and retinal parameters in a 5xFAD model of Alzheimer's disease reveals differences dependent on genotype and sex.","authors":"Georg Ladurner, Conrad W Merkle, Lucas May, Sybren Worm, Yash Patel, Maria Varaka, Magdalena Daurer, Laurenz Jauk, Roland Rabl, Philipp Königshofer, Gerhard Garhöfer, Manuela Prokesch, Bernhard Baumann","doi":"10.1364/BOE.579020","DOIUrl":"10.1364/BOE.579020","url":null,"abstract":"<p><p>The retinal phenotype of Alzheimer's disease (AD), its connection to spatial memory, and the influence of sex on the phenotype are poorly understood. Here, we investigate the retina and spatial memory of 5xFAD mouse models of AD by measuring retinal and behavioral parameters. A custom-built optical coherence tomography (OCT) system is used to image the retina of 32 transgenic and 32 non-transgenic 5xFAD mice over the course of 6 months (3-9 months of age). The Morris water maze (MWM) test was performed to examine correlations between the retinal and spatial memory phenotype of the mouse model. Total retinal and inner retinal layer thickness increased slightly over the measurement period, while outer retinal layer and retinal nerve fiber layer thickness showed no significant change. The correlation analysis between MWM and layer thickness data revealed a positive correlation between inner nuclear layer thickness and spatial memory capabilities. OCT and MWM data revealed sex-based differences in the retinal phenotype of the 5xFAD mouse model, with changes in retinal thickness in different stages of the study and dissimilar correlations between retinal and spatial memory phenotype.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"17 1","pages":"405-426"},"PeriodicalIF":3.2,"publicationDate":"2025-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12795427/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145965190","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-18eCollection Date: 2026-01-01DOI: 10.1364/BOE.573843
Edmund Sumpena, Andrew Cornelio, Ana Collazo, Shu Jie Ting, Tim Kowalczyk, Xuejuan Jiang, Alexa Beiser, Sudha Seshadri, Amir H Kashani, Craig K Jones
Eye movements, optical opacities, and other factors can introduce artifacts during the acquisition of optical coherence tomography angiography volumes, resulting in suboptimal imaging quality. We aim to develop an automated deep learning model to separate excellent-quality from suboptimal-quality volumes in a quantitative and objective manner. Existing works use supervised classifiers trained on 2D en face images, which 1) represent quality as rigid and discrete classes, 2) require large amounts of labeled data for every type of artifact to generalize effectively, and 3) discard valuable depth information from the original volume. We propose OCTA-GAN, an efficient 3D generative adversarial network architecture that incorporates multi-scale processing layers to assess the quality of scans by fusing fine vasculature details with larger anatomical context. The unsupervised model learns patterns associated with excellent-quality volumes and accurately determines the quality of unseen volumes. Experimental results show OCTA-GAN's discriminator distinguishes excellent-quality from suboptimal-quality volumes with an AUC of 0.92, a sensitivity of 95.7%, and a specificity of 76.6%, surpassing the baseline 3D architecture (AUC = 0.55, sensitivity = 97.8%, specificity = 12.8%). Further analysis attributes the improved performance to the synergy between the generator model and discriminator architecture, whose robust feature representations effectively capture the intricate vasculature. Comparison with state-of-the-art 2D supervised en face classifiers demonstrates OCTA-GAN's ability to generalize across diverse artifacts and provides an interpretable organization of the output scores based on severity.
{"title":"Unsupervised quality assessment with generative adversarial networks for 3D OCTA microvascular imaging.","authors":"Edmund Sumpena, Andrew Cornelio, Ana Collazo, Shu Jie Ting, Tim Kowalczyk, Xuejuan Jiang, Alexa Beiser, Sudha Seshadri, Amir H Kashani, Craig K Jones","doi":"10.1364/BOE.573843","DOIUrl":"10.1364/BOE.573843","url":null,"abstract":"<p><p>Eye movements, optical opacities, and other factors can introduce artifacts during the acquisition of optical coherence tomography angiography volumes, resulting in suboptimal imaging quality. We aim to develop an automated deep learning model to separate excellent-quality from suboptimal-quality volumes in a quantitative and objective manner. Existing works use supervised classifiers trained on 2D <i>en face</i> images, which 1) represent quality as rigid and discrete classes, 2) require large amounts of labeled data for every type of artifact to generalize effectively, and 3) discard valuable depth information from the original volume. We propose OCTA-GAN, an efficient 3D generative adversarial network architecture that incorporates multi-scale processing layers to assess the quality of scans by fusing fine vasculature details with larger anatomical context. The unsupervised model learns patterns associated with excellent-quality volumes and accurately determines the quality of unseen volumes. Experimental results show OCTA-GAN's discriminator distinguishes excellent-quality from suboptimal-quality volumes with an AUC of 0.92, a sensitivity of 95.7%, and a specificity of 76.6%, surpassing the baseline 3D architecture (AUC = 0.55, sensitivity = 97.8%, specificity = 12.8%). Further analysis attributes the improved performance to the synergy between the generator model and discriminator architecture, whose robust feature representations effectively capture the intricate vasculature. Comparison with state-of-the-art 2D supervised <i>en face</i> classifiers demonstrates OCTA-GAN's ability to generalize across diverse artifacts and provides an interpretable organization of the output scores based on severity.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"17 1","pages":"378-393"},"PeriodicalIF":3.2,"publicationDate":"2025-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12795412/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145964660","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-17eCollection Date: 2026-01-01DOI: 10.1364/BOE.578245
Weijin Chen, Xin Cheng, Ning Wang, Xuming Zhang, Min Su, Weichang Wu, Peitian Mu, Quan Du, Hwa-Yaw Tam, Weibao Qiu, Jiyan Dai
In this study, we developed a minimally invasive intravascular catheter integrating ultrasonic imaging with fiber Bragg grating (FBG)-based mechanical sensing. By co-integrating a high-frequency miniature ultrasound transducer and a ZEONEX-based polymer optical fiber Bragg grating at the tip of a 1.2 mm catheter, synchronized monitoring of vascular structure visualization and acquisition of hemodynamic pressure data was achieved. In vitro experiments demonstrated that the device attained an axial resolution of 50 µm and a pressure sensitivity of 6.81 pm/kPa when operating in an isotonic saline solution. This technology combines dynamic pressure sensing capabilities with ultrasonic structural imaging in a vascular interventional catheter to overcome the limitations of traditional single-modality catheters in assessing the extent of arterial stenosis. In vitro experiments demonstrated that the pressure sensitivity of this composite catheter was significantly higher than that of commercial pressure wires. Animal experiments successfully captured systolic pressure and diastolic pressure, confirming that the composite catheter is capable of detecting dynamic changes in intravascular stress, and therefore, facilitating a multimodal diagnostic approach for the diagnosis of cardiovascular diseases.
{"title":"Multimodality catheter composed of intravascular ultrasound imaging and polymer optical fiber FFR functions for the diagnosis of cardiac disease.","authors":"Weijin Chen, Xin Cheng, Ning Wang, Xuming Zhang, Min Su, Weichang Wu, Peitian Mu, Quan Du, Hwa-Yaw Tam, Weibao Qiu, Jiyan Dai","doi":"10.1364/BOE.578245","DOIUrl":"10.1364/BOE.578245","url":null,"abstract":"<p><p>In this study, we developed a minimally invasive intravascular catheter integrating ultrasonic imaging with fiber Bragg grating (FBG)-based mechanical sensing. By co-integrating a high-frequency miniature ultrasound transducer and a ZEONEX-based polymer optical fiber Bragg grating at the tip of a 1.2 mm catheter, synchronized monitoring of vascular structure visualization and acquisition of hemodynamic pressure data was achieved. In vitro experiments demonstrated that the device attained an axial resolution of 50 µm and a pressure sensitivity of 6.81 pm/kPa when operating in an isotonic saline solution. This technology combines dynamic pressure sensing capabilities with ultrasonic structural imaging in a vascular interventional catheter to overcome the limitations of traditional single-modality catheters in assessing the extent of arterial stenosis. In vitro experiments demonstrated that the pressure sensitivity of this composite catheter was significantly higher than that of commercial pressure wires. Animal experiments successfully captured systolic pressure and diastolic pressure, confirming that the composite catheter is capable of detecting dynamic changes in intravascular stress, and therefore, facilitating a multimodal diagnostic approach for the diagnosis of cardiovascular diseases.</p>","PeriodicalId":8969,"journal":{"name":"Biomedical optics express","volume":"17 1","pages":"365-377"},"PeriodicalIF":3.2,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12795434/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145965220","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}