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Genomic and Functional Characterization of a Novel Burkholderia sp. StrainAU4i from Pea Rhizosphere Conferring Plant Growth Promoting Activities 豌豆根际具有促进植物生长活性的新型伯克霍尔德菌菌株au4i的基因组学和功能鉴定
Pub Date : 2015-09-15 DOI: 10.4172/2169-0111.1000129
U. Devi, Indu Khatri, R. Saini, L. Kumar, Devender Singh, Aditi Gupta, Navinder Kumar, A. Gárriz, Srikrishna Subramanian, D. Sharma, A. Saini
Members of Burkholderia genus are gaining importance for their application in crop improvement by acting as plant growth-promoting rhizobacteria (PGPR), however, our knowledge about mechanisms of their plant growth promotion is limited. Herein, we aimed to isolate Burkholderia sp. from pea rhizosphere that confers plant growth promoting traits both in vitro and in vivo using pea seedlings as model. We have isolated a novel Burkholderia strain AU4i (B-AU4i) from pea rhizosphere that strongly promotes root and shoot growth in plantae. B-AU4i confers phosphate solubilization, indole-3-acetic acid production, N2 fixation, ammonia production, siderophore production, HCN production, and inhibits growth of pathogenic fungi both in vitro and in vivo experiments where we employed pea-seedlings as model system. Sequencing of B-AU4i genome using the Illumina-HiSeq 1000 technology reveals that it contains genes for the above-mentioned biofertilizer and biocontrol activities. The findings demonstrate the potential use of B-AU4i as plant growth promoter, which could be due to the presence of relevant genes in its genome. The current study improves our knowledge regarding the genes present in Burkholderia spp. that are involved in its plant growth promotion activities. B-AU4i strain can be used for improving agriculture productivity owing to its strong biofertilizer and biocontrol activity.
伯克霍尔德菌属成员作为促进植物生长的根瘤菌(PGPR)在作物改良中的应用越来越重要,然而,我们对其促进植物生长的机制知之甚少。本研究旨在以豌豆幼苗为模型,从豌豆根际分离出伯克霍尔德菌,该菌在体内和体外均具有促进植物生长的特性。从豌豆根际分离到一株新的伯克霍尔德菌AU4i (B-AU4i),该菌株对植物根和茎的生长有强烈的促进作用。在体外和体内实验中,我们以豌豆幼苗为模型系统,B-AU4i具有磷酸盐增溶、吲哚-3-乙酸生产、N2固定、氨生产、铁载体生产、HCN生产和抑制致病真菌生长的作用。利用Illumina-HiSeq 1000技术对B-AU4i基因组进行测序,发现其含有上述生物肥料和生物防治活性的基因。这些发现证明了B-AU4i作为植物生长促进剂的潜在用途,这可能是由于其基因组中存在相关基因。目前的研究提高了我们对伯克霍尔德氏菌中参与其植物生长促进活动的基因的认识。B-AU4i菌株具有较强的生物肥效和生物防治活性,可用于提高农业生产力。
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引用次数: 13
Genetic Engineering and Nanotechnology: When Science-Fiction Meets Reality! 基因工程和纳米技术:当科幻遇见现实!
Pub Date : 2015-08-30 DOI: 10.4172/2169-0111.1000128
F. Menaa
Genetic engineering represents the direct manipulation of an organism’s genome using biotechnology. The manipulation usually consists in modifying the genetic background of cells by transferring/ inserting or deleting one or more genes, genetic fragments or even altering a single nucleotide, in order to produce improved or novel organisms. For instance, we recently showed the possibility to engineer stem cells to enhance the anti-tumor immune response and lifespan of animals.
基因工程是指利用生物技术直接操纵生物体的基因组。这种操作通常包括通过转移/插入或删除一个或多个基因、遗传片段甚至改变单个核苷酸来改变细胞的遗传背景,以产生改良的或新的生物体。例如,我们最近展示了改造干细胞以增强抗肿瘤免疫反应和延长动物寿命的可能性。
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引用次数: 14
Variations in Immediate-early Genes Encoding c-Fos, c-Jun and IER5 Transcription Factors are Associated with Ischemic Stroke 编码c-Fos、c-Jun和IER5转录因子的早期基因变异与缺血性卒中相关
Pub Date : 2015-08-18 DOI: 10.4172/2169-0111.1000127
K. Tadevosyan, G. Tsakanova, A. Boyajyan
Transcription factors make a great contribution in the regulation of mechanisms, which are involved in the preand post-stroke events. The main goal of the current study was to evaluate the potential association of single nucleotide polymorphisms FOS (rs7101, rs1063169), JUN (rs11688) and IER5 (rs6425663) with ischemic stroke in Armenian population. A total 161 patients with ischemic stroke and 165 controls were involved in this study. Transcription factors were genotyped using polymerase chain reaction with sequence-specific primers (PCR-SSP). Association of genotype, allelic and carriage frequencies with ischemic stroke was assessed using Pearson's Chisquare test. Multiple test corrected p values less than 0.05 were considered significant. The data obtained demonstrated a significant negative association between the FOS rs1063169*T, JUN rs11688*A and IER5 rs6425663*T minor alleles with ischemic stroke. On the other hand, the frequency distribution of rs7101*T minor allele of FOS gene and its carriage rate in the group of patients were significantly higher than in controls. Our results indicate that the minor alleles of FOS rs1063169, JUN rs11688 and IER5 rs6425663 SNPs can be considered as protective against ischemic stroke, whereas the minor allele of FOS rs7101 SNP represents a risk factor for this disease.
转录因子在脑卒中发生前和发生后的机制调控中起着重要作用。本研究的主要目的是评估单核苷酸多态性FOS (rs7101, rs1063169), JUN (rs11688)和IER5 (rs6425663)与亚美尼亚人群缺血性卒中的潜在关联。本研究共纳入161例缺血性脑卒中患者和165例对照组。利用序列特异性引物聚合酶链反应(PCR-SSP)对转录因子进行基因分型。使用Pearson’s Chisquare检验评估基因型、等位基因和携带频率与缺血性卒中的关系。多次检验校正p值小于0.05被认为是显著的。获得的数据显示FOS rs1063169*T、JUN rs11688* a和IER5 rs6425663*T小等位基因与缺血性脑卒中呈显著负相关。另一方面,患者组FOS基因rs7101*T小等位基因的频率分布及其携带率均显著高于对照组。我们的研究结果表明,FOS rs1063169、JUN rs11688和IER5 rs6425663 SNP的小等位基因可以被认为对缺血性卒中具有保护作用,而FOS rs7101 SNP的小等位基因则是缺血性卒中的危险因素。
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引用次数: 4
Engineering of A Lipase towards Thermostability: Studies on Additive Effect ofthe two Thermo-Stabilising Mutations at Protein Surface 一种脂肪酶的热稳定性工程:两种热稳定性突变在蛋白质表面加性效应的研究
Pub Date : 2015-08-03 DOI: 10.4172/2169-0111.1000126
K. Rakesh, C. Nisha, S. Ranvir, Pushpender Ks, K. Jagdeep
In this study we have showed combined effect of two single point mutations S311C (LipR2) and R214C (LipR3) on the protein stability and overall change in biochemical properties. We found that both of these mutations are near the surface and individually enhanced the thermal stability of the protein (T1/2 for S311C=4.5 h & R214C=7 h at 60°C). But, their combined effect was not additive on thermostability. T1/2 of double mutant (LipR2 + LipR3) was 4 h at 60°C. Circular dichroism (CD) and fluorescence studies also supported our findings. Homology modelling studies demonstrated that in double mutant (LipR4) side chain of Cys311 is protruding towards the bulk solvent and is easily available for oxidation of sulfahydril group. This might be the reason for its low thermostability as compared to LipR3. We also observed that, side chains of Cys 214 didn’t changed. Here, one of the Cystein (Cys311) is behaving like a hydrophilic residue while the other (Cys 214) is behaving like hydrophobic residue. Keywords: Lipase; Thermostability; Mutations; Enzyme; Nucleotide sequence Introductio
在这项研究中,我们展示了两个单点突变S311C (LipR2)和R214C (LipR3)对蛋白质稳定性和生化特性总体变化的联合影响。我们发现这两种突变都靠近表面,并且分别增强了蛋白质的热稳定性(T1/2在60°C下S311C=4.5 h和R214C=7 h)。但是,它们的综合作用对热稳定性的影响不是相加的。双突变体(LipR2 + LipR3)在60℃下T1/2为4 h。圆二色性(CD)和荧光研究也支持我们的发现。同源性模拟研究表明,在双突变体(LipR4)中,Cys311侧链向本体溶剂方向突出,易于氧化磺胺基。这可能是与LipR3相比,其热稳定性较低的原因。我们还观察到,cys214的侧链没有发生变化。其中一个半胱氨酸(Cys311)表现为亲水性残基,而另一个(cys214)表现为疏水性残基。关键词:脂肪酶;热稳定性;突变;酶;核苷酸序列介绍
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引用次数: 3
Asking the Right Question about the Genetic Basis of Domestication: What is theSource of Genetic Diversity of Domesticated Species? 问关于驯化的遗传基础的正确问题:驯化物种遗传多样性的来源是什么?
Pub Date : 2015-08-02 DOI: 10.4172/2169-0111.1000125
Glazko, B. Zybailov, T. Glazko
In this paper we investigate source of increased genetic diversity - one of the most obvious characteristics of domesticated species, leading to a wide range of phenotypic variability (breeds). The hypothesis that we put forward during the course of our studies focuses on transposons and retro-viral elements in the domesticated genomes. The inherent tolerance for transposition of mobile elements could lead to enhanced genetic diversity in the domesticated species.
在本文中,我们研究了遗传多样性增加的来源-驯化物种最明显的特征之一,导致广泛的表型变异(品种)。我们在研究过程中提出的假设主要集中在驯化基因组中的转座子和逆转录病毒元件。对移动元件转位的固有耐受性可能导致驯化物种的遗传多样性增强。
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引用次数: 4
The Politics behind Global Food Security 全球粮食安全背后的政治
Pub Date : 2015-07-11 DOI: 10.4172/2169-0111.1000124
H. Kl
The politics behind food production has never been as newsworthy, and as a result, as polarized as it is today. It seems that the world can be divided into two opposing ideologies, with little room for any sharing of values in between. The food sovereigntists desire that their food be produced in a traditional fashion without modern farming practices such as factory farms, chemical inputs or biotechnology, including the use of genetically modified (GM) crops. The other faction represents those who are in favor of agricultural biotechnology to ensure that crops are both high yielding and low in cost.
粮食生产背后的政治从未像今天这样具有新闻价值,因此也从未像今天这样两极分化。世界似乎可以分为两种对立的意识形态,两者之间几乎没有任何共享价值的空间。粮食主权主义者希望他们的食物以传统方式生产,而不需要现代农业实践,如工厂化农场、化学投入或生物技术,包括使用转基因作物。另一派代表那些支持农业生物技术以确保作物既高产又低成本的人。
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引用次数: 1
Gene Expression Profiles of Aralkylamine N-Acetyltransferase, B-cell Translocation Gene-2 and Fatty Acid Synthase in Pasture-based Primiparous Holstein-Friesian Dairy Cows Supplemented with Crude Degummed Canola Oil 饲粮中添加粗脱胶菜籽油对初产荷斯坦-弗里奶牛ar烷基胺n-乙酰转移酶、b细胞易位基因-2和脂肪酸合成酶的影响
Pub Date : 2015-07-10 DOI: 10.4172/2169-0111.1000123
Malau-Aduli Aeo, Otto, Bénédicte Suybeng, A. Kashani, P. Lane, B. Malau-Aduli, P. Nichols
The effect of oil-rich supplements on the expression of genes involved in lipogenesis and reproduction in pasturebased dairy cows is currently unknown, or at best, scanty and limited to impacts on cow liveweight, body condition score, milk composition, fatty acid and plasma metabolite profiles only. This research investigated the gene expression patterns of Aralkylamine N-acetyltransferase (AANAT), B-cell translocation gene-2 (BTG2) and Fatty Acid Synthase (FASN) genes in response to incremental levels of dietary crude degummed canola oil (CDCO). We tested the hypothesis that the relative mRNA abundance and gene expression profiles of AANAT, BTG2 and FASN in primiparous Holstein-Friesian cows will be up-regulated in response to post-partum dietary supplementation with CDCO in a typical pasture-based dairy production system. Thus, the primary objective of this study was to investigate the expression of AANAT, BTG2 and FASN genes in response to incremental levels of CDCO. A random allocation of primiparous Holstein-Friesian dairy cows into four treatment groups comprising wheat-based pelleted with no supplemental CDCO (control), or with CDCO added at 25 ml kg-1 DM (low), 35 ml kg-1 DM (medium) and 50 ml kg-1 DM (high) was utilized in a ten-week experimental feeding trial including two weeks of adjustment. Both level of supplementation and their interaction with duration were significant sources of variation (P 0.05). The high (0.67 fold), medium (0.87 fold) and low (0.56 fold) treatments had suppressed BTG2 expressions compared to the control (1.0 fold) group. The low expression of BTG2 might be important when the reproductive system of cows is recovering from the effect of gestation and new cell growth is required.
富油补充剂对牧场奶牛脂肪生成和繁殖相关基因表达的影响目前尚不清楚,或者充其量只是对奶牛活重、身体状况评分、牛奶成分、脂肪酸和血浆代谢物谱的影响有限。本研究研究了花生ar烷基胺n -乙酰转移酶(AANAT)、b细胞易位基因-2 (BTG2)和脂肪酸合成酶(FASN)基因在饲粮粗脱胶菜籽油(CDCO)添加水平增加时的表达模式。我们验证了在典型的牧场奶牛生产系统中,初产荷斯泰因-弗里斯奶牛中AANAT、BTG2和FASN的相对mRNA丰度和基因表达谱会因产后饲粮中添加CDCO而上调。因此,本研究的主要目的是研究AANAT、BTG2和FASN基因的表达对CDCO水平增加的响应。将初产荷斯泰因-弗里西亚奶牛随机分为4个处理组,分别为小麦基颗粒,不添加CDCO(对照组)、CDCO添加量分别为25 ml kg-1 DM(低)、35 ml kg-1 DM(中)和50 ml kg-1 DM(高),进行为期10周的试验饲养,其中包括2周的调整期。饲粮添加水平及其与持续时间的交互作用是差异的显著来源(p0.05)。与对照组(1.0倍)相比,高(0.67倍)、中(0.87倍)和低(0.56倍)处理抑制了BTG2的表达。BTG2的低表达可能在奶牛生殖系统从妊娠影响中恢复并需要新细胞生长时具有重要意义。
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引用次数: 2
Epigenetics Effects of Stress Influence the Genomics, Proteomics, Metabolomicsof Addiction and Cancer Pathways 应激对基因组学、蛋白质组学、代谢组学、成瘾和癌症途径的表观遗传学影响
Pub Date : 2015-07-02 DOI: 10.4172/2169-0111.1000122
D. Akoury
The metabolic and genetic changes instigated by the Stress pathways are involved in the pathogenesis of Addiction and subsequently Cancer through a cascade involving Genomics, Transcriptomics, Proteonomic and finally Metabolomic.
应激途径引发的代谢和遗传变化通过基因组学、转录组学、蛋白质组学和代谢组学的级联反应参与了成瘾和随后的癌症的发病机制。
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引用次数: 3
Towards Genetic Engineering in Cocoyam Food Crop: Challenges and Prospects 可可豆粮食作物基因工程:挑战与展望
Pub Date : 2015-06-26 DOI: 10.4172/2169-0111.1000121
Obidiegwu Ej
Cocoyams (Colocasia esculenta and Xanthosoma sagittifolium) are important staple food in many parts of tropics including Africa, Asia and Pacific. Cocoyam is categorised as a neglected food crop and mainly grown for subsistence agriculture. Attempts to improve the crop have been limited due to knowledge gaps in physiological and biological processes affecting breeding against biotic and abiotic stresses. Genetic engineering offers an alternative platform in advancing improvement. This paper highlights the progress made in tissue culture through micropropagation, organogenesis and somatic embryogenesis. The influence of genotypes, explant sources, and culture media is brought into perspective while elucidating system regeneration efficiency using axillary buds, shoot tips, meristem tips and petiole. The efficiency of transformation system using both Agrobacterium tumefaciens and particle bombardment is highlighted while suggestions are made for future research in genetic engineering.
椰子(Colocasia esculenta和Xanthosoma sagittifolium)是包括非洲、亚洲和太平洋在内的许多热带地区重要的主食。椰子被归类为一种被忽视的粮食作物,主要用于自给农业。由于在生理和生物过程方面的知识差距,对作物进行改良的努力受到限制,这些生理和生物过程影响育种抵御生物和非生物胁迫。基因工程为推进改良提供了另一种平台。本文重点介绍了在组织培养、器官发生和体细胞胚胎发生方面的研究进展。利用腋芽、茎尖、分生组织尖和叶柄对系统再生效率进行了研究,同时引入了基因型、外植体来源和培养基的影响。强调了农杆菌和粒子轰击结合转化系统的效率,并对今后的基因工程研究提出了建议。
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引用次数: 2
We can Ourselves have an Effect on the Function of our Genes 我们自己可以对基因的功能产生影响
Pub Date : 2015-06-13 DOI: 10.4172/2169-0111.1000120
P. Portin
It is customary to say that humans are the product of the interaction between genetic and environmental factors. This is, of course, true in the sense that the development of all our characteristics is influenced by both the genes and the environment; both are necessary, and neither can alone achieve anything. This is, however, only a part of a more complex web of interactions.
人们习惯上说,人类是遗传因素和环境因素相互作用的产物。当然,这是正确的,因为我们所有特征的发展都受到基因和环境的影响;两者都是必要的,任何一方都不能单独取得任何成就。然而,这只是一个更复杂的交互网络的一部分。
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引用次数: 0
期刊
Advancements in genetic engineering
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