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Multi-omics-based decoding of circulating biomarkers in amyotrophic lateral sclerosis and risks in environmental toxins. 肌萎缩性侧索硬化症循环生物标志物的多组学解码和环境毒素风险。
IF 2.7 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2025-11-06 DOI: 10.1186/s40360-025-01024-9
Lei Xu, Bin Huang, Yaqiu Zhou, Xiaolin Liao, Ting Chen, Hongping He

Background: Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease characterized by the interplay of genetic and environmental factors, and currently, there there is a lack of effective diagnostic or therapeutic strategies available. This study aims to identify circulating biomarkers for ALS and investigate their interactions with environmental toxins.

Methods: This research utilizes plasma proteomic genome-wide association study (GWAS) data and whole blood transcriptomic data from ALS patients to screen for potential circulating biomarkers through Mendelian randomization (MR). Subsequently, functional enrichment analysis and immune infiltration analysis were performed. An integrated machine learning approach will be used to construct a diagnostic model, with hub genes selected based on SHAP values. The model's performance will be validated using receiver operating characteristic (ROC) curves, nomogram, and decision curve analysis (DCA). Finally, reverse network toxicology will be used to explore the interaction mechanisms between hub genes and environmental toxins.

Results: Based on a MR analysis of plasma proteomics, we identified 68 plasma proteins significantly associated with the risk of ALS. By integrating differentially expressed genes (DEGs) from whole blood transcriptomics (1,116 DEGs), we selected four potential circulating biomarkers: FCRL3, HTATIP2, RNASE6, and SF3B4. Functional enrichment analysis indicated that the pathogenesis of ALS is closely related to autophagy, apoptosis, the endoplasmic reticulum unfolded protein response, and the NF-κB signaling pathway. Immune infiltration analysis revealed a disruption of the immune microenvironment mediated by T cells/myeloid cells in ALS patients. Validation through 113 machine learning algorithms showed that the random forest model exhibited the best diagnostic performance (AUC = 0.786), while SHAP analysis confirmed the contribution ranking of hub biomarkers: RNASE6 > FCRL3 > HTATIP2 > SF3B4. Further validation of their diagnostic value was performed using ROC curves, nomograms, and DCA. Environmental toxins analysis revealed that substances such as benzo(a)pyrene exhibit significant neurotoxicity, and molecular docking confirmed that they can interfere with the function of hub biomarkers through strong binding (∆G < -5 kcal·mol⁻¹), suggesting potential environmental pathogenic mechanisms in ALS.

Conclusions: This study not only highlights the value of FCRL3, HTATIP2, RNASE6, and SF3B4 as potential diagnostic biomarkers and therapeutic targets for ALS but also provides new evidence for the involvement of environmental toxins, particularly benzo(a)pyrene, in the pathogenesis of ALS through gene-environment interactions.

背景:肌萎缩性侧索硬化症(ALS)是一种以遗传和环境因素相互作用为特征的致死性神经退行性疾病,目前缺乏有效的诊断和治疗策略。本研究旨在鉴定ALS的循环生物标志物,并研究它们与环境毒素的相互作用。方法:本研究利用血浆蛋白质组学全基因组关联研究(GWAS)数据和ALS患者全血转录组学数据,通过孟德尔随机化(MR)筛选潜在的循环生物标志物。随后进行功能富集分析和免疫浸润分析。将使用集成的机器学习方法构建诊断模型,并根据SHAP值选择轮毂基因。模型的性能将通过受试者工作特征(ROC)曲线、nomogram和decision curve analysis (DCA)进行验证。最后,反向网络毒理学将用于探索枢纽基因与环境毒素之间的相互作用机制。结果:基于血浆蛋白质组学的MR分析,我们确定了68种与ALS风险显著相关的血浆蛋白。通过整合来自全血转录组学(1116个)的差异表达基因(DEGs),我们选择了四个潜在的循环生物标志物:FCRL3、HTATIP2、RNASE6和SF3B4。功能富集分析提示ALS的发病机制与自噬、凋亡、内质网未折叠蛋白反应、NF-κB信号通路密切相关。免疫浸润分析揭示了T细胞/骨髓细胞介导的ALS患者免疫微环境的破坏。通过113种机器学习算法的验证,随机森林模型的诊断效果最好(AUC = 0.786),而SHAP分析证实了枢纽生物标志物的贡献排名:RNASE6 > FCRL3 > HTATIP2 > SF3B4。进一步验证其诊断价值使用ROC曲线,nomogram和DCA。环境毒素分析显示苯并(a)芘等物质表现出显著的神经毒性,分子对接证实它们可以通过强结合(∆G < -5 kcal·mol⁻)干扰中枢生物标志物的功能,提示ALS可能的环境致病机制。结论:本研究不仅突出了FCRL3、HTATIP2、RNASE6和SF3B4作为ALS潜在的诊断生物标志物和治疗靶点的价值,而且为环境毒素,特别是苯并(a)芘,通过基因-环境相互作用参与ALS发病提供了新的证据。
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引用次数: 0
The effects of opium consumption on glycemic indices: a systematic review and meta-analysis of human and animal studies. 鸦片消费对血糖指数的影响:人类和动物研究的系统回顾和荟萃分析。
IF 2.7 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2025-11-06 DOI: 10.1186/s40360-025-00969-1
Fereshte Zanjiri, Yaser Mohammadi, Laya Ravanjo, Seyed Mohammad Riahi
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引用次数: 0
Berberine and berberrubine promote the expression of CYP3A4 via enhancing the binding of nuclear receptor PXR. 小檗碱和小檗碱通过增强核受体PXR的结合促进CYP3A4的表达。
IF 2.7 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2025-11-06 DOI: 10.1186/s40360-025-01026-7
Gui-Mei Xiao, Ting Lu, Dandan Zhu, Ming-Yi Liu
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引用次数: 0
Vitamin E-valproate co-therapy attenuated oxidative stress, neuroinflammation, related cognitive deficits and neuronal damage in Cypermethrin exacerbated seizure. 维生素e -丙戊酸联合治疗可减轻氯氰菊酯加重癫痫发作的氧化应激、神经炎症、相关认知缺陷和神经元损伤。
IF 2.7 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2025-11-05 DOI: 10.1186/s40360-025-01027-6
Aminu Imam, Abdulraheem Mudathir Tunde, Abdulbasit Amin, Wahab Imam Abdulmajeed, Alhassan Godwin Attai, Aalimah Akinosho Akorede, Omamuyovwi Meashack Ijomone, Moyosore Salihu Ajao
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引用次数: 0
Unraveling the mechanism of tetracycline-induced renal injury: an evaluation of drug safety based on network toxicology and molecular dynamics simulations. 揭示四环素致肾损伤的机制:基于网络毒理学和分子动力学模拟的药物安全性评价。
IF 2.7 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2025-11-03 DOI: 10.1186/s40360-025-00991-3
Yimao Wu, Yalun Liang, Jintao Liang, Zifeng Chen, Bo Tang, Junlong Zhu, Yifeng Shen
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引用次数: 0
Association between air pollution and dry eye: insights from network toxicology and molecular docking analysis. 空气污染与干眼症的关系:来自网络毒理学和分子对接分析的见解。
IF 2.7 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2025-11-03 DOI: 10.1186/s40360-025-00994-0
Yuting Wu, Ziman Jiao, Yuxin Liu, Yunhao Zhou, Haiyu Li, Xin Chen, Guanghui Liu
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引用次数: 0
Surfactant-driven modulation of protein corona on solid lipid nanoparticles: Insights including molecular docking studies. 表面活性剂驱动的蛋白质电晕在固体脂质纳米颗粒上的调制:包括分子对接研究在内的见解。
IF 2.7 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2025-11-03 DOI: 10.1186/s40360-025-01017-8
Shelly Roselyn Van Eyssen, Doğa Kavaz

Background: Nanoparticles have been used in nanomedicine for therapeutic purposes. Lipids have been a popular choice of material in the synthesis of biocompatible nanoparticles due to their ability to encapsulate diverse therapeutic agents. However, once introduced into biological environments, nanoparticles rapidly adsorb proteins on their surface, forming a protein corona that can alter drug release, targeting and cellular interactions. Understanding these effects is essential for optimizing solid lipid nanoparticles (SLNs) as drug delivery systems.

Methods: SLNs were synthesized using stearic acid (SA) as the lipid core and stabilized with surfactants, Tween 80 and SDS (sodium dodecyl sulphate). To mimic in vitro conditions, SLNs were incubated with 5% FBS (foetal bovine serum) for varying durations to allow soft and hard protein corona formation. SLNs were characterized for size and surface charge via dynamic light scattering while UV visible spectroscopy, protein adsorption studies, FTIR and the Bradford Assay were employed to confirm and quantify protein corona formation. In parallel, molecular docking was conducted to analyse protein-nanoparticle interactions. To investigate the potential influence of protein corona formation on drug release, ceftriaxone (CTX) was encapsulated within SLNs followed by immediate incubation to allow corona formation. Subsequent evaluations included drug leakage, release profile and antibacterial efficacy against Staphylococcus aureus and Pseudomonas aeruginosa.

Results: Protein adsorption was confirmed on all SLN formulations and closely correlated with nanoparticle surface charge. Formulations with more negative zeta potentials adsorbed higher amounts of protein. SDS concentration influenced protein adsorption with higher SDS content reducing overall corona formation. Molecular docking revealed that protein-ligand interactions were maintained by hydrogen bonding and hydrophobic forces. Drug release studies confirmed that the protein corona reduced cumulative drug release by 6%. Antibacterial assays confirmed slightly reduced efficacy against both strains aligning with the reduced cumulative drug release.

Conclusions: This study demonstrated that protein corona formation on dual-surfactant SLNs is strongly influenced by surface charge and surfactant composition and in turn modulates drug release dynamics. The protein corona was shown to modulate drug release with potential implications for antibacterial efficacy. These findings highlight the importance of tailoring surface properties to control protein-nanoparticle interactions thus providing insight into the design of lipid-based nanoparticles for therapeutic applications.

背景:纳米颗粒已被用于纳米医学的治疗目的。由于脂质能够包封不同的治疗剂,因此在合成生物相容性纳米颗粒中,脂质一直是一种流行的材料选择。然而,一旦引入生物环境,纳米颗粒迅速吸附蛋白质在其表面,形成一个蛋白质冠,可以改变药物释放,靶向和细胞相互作用。了解这些效应对于优化固体脂质纳米颗粒(SLNs)作为药物递送系统至关重要。方法:以硬脂酸(SA)为脂质核,用表面活性剂Tween 80和SDS(十二烷基硫酸钠)稳定制备sln。为了模拟体外条件,sln与5%胎牛血清(FBS)孵育不同时间,以形成软和硬蛋白冠。通过动态光散射对sln的大小和表面电荷进行了表征,而采用紫外可见光谱、蛋白质吸附研究、FTIR和Bradford Assay来确认和定量蛋白质电晕的形成。同时,进行分子对接以分析蛋白质与纳米颗粒的相互作用。为了研究蛋白质电晕形成对药物释放的潜在影响,将头孢曲松(CTX)包裹在sln中,然后立即孵育以使其形成电晕。随后的评价包括药物泄漏、释放情况以及对金黄色葡萄球菌和铜绿假单胞菌的抗菌效果。结果:蛋白质吸附与纳米粒子表面电荷密切相关。具有更多负zeta电位的配方吸附了更多的蛋白质。SDS浓度影响蛋白质吸附,SDS含量越高,总电晕形成越少。分子对接表明,蛋白质与配体的相互作用是通过氢键和疏水力维持的。药物释放研究证实,蛋白质冠减少了6%的累积药物释放。抗菌试验证实对两种菌株的药效略有下降,与累积药物释放减少一致。结论:本研究表明,双表面活性剂SLNs上蛋白冠的形成受表面电荷和表面活性剂组成的强烈影响,进而调节药物释放动力学。蛋白质冠被证明可以调节药物释放,具有潜在的抗菌功效。这些发现强调了调整表面特性以控制蛋白质-纳米颗粒相互作用的重要性,从而为设计用于治疗应用的脂质纳米颗粒提供了见解。
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引用次数: 0
Renoprotective impact of tiron against diclofenac-induced nephrotoxicity: targeting TLR4/NF-κB/NLRP3/Caspase-1/IL1-β pathway. 铁对双氯芬酸肾毒性的保护作用:靶向TLR4/NF-κB/NLRP3/Caspase-1/ il -1 -β途径
IF 2.7 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2025-10-30 DOI: 10.1186/s40360-025-01012-z
Aya S Ragab, Alaa S El-Kelany, Haitham M Sewilam, Dalia H El-Kashef
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引用次数: 0
Imidacloprid contributes to bladder cancer progression: preliminary evidence based on network toxicology, machine learning and molecular docking. 吡虫啉促进膀胱癌进展:基于网络毒理学、机器学习和分子对接的初步证据。
IF 2.7 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2025-10-30 DOI: 10.1186/s40360-025-01016-9
Jie Ming, Song Jin, Zhanliang Liu, Kun Yang, Mingjun Shi, Yinong Niu
{"title":"Imidacloprid contributes to bladder cancer progression: preliminary evidence based on network toxicology, machine learning and molecular docking.","authors":"Jie Ming, Song Jin, Zhanliang Liu, Kun Yang, Mingjun Shi, Yinong Niu","doi":"10.1186/s40360-025-01016-9","DOIUrl":"10.1186/s40360-025-01016-9","url":null,"abstract":"","PeriodicalId":9023,"journal":{"name":"BMC Pharmacology & Toxicology","volume":"26 1","pages":"180"},"PeriodicalIF":2.7,"publicationDate":"2025-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12577002/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145408133","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sodium thiosulfate (hydrogen sulfide donor) ameliorates the pancreatic and liver damage induced by cyclophosphamide and/or ionizing gamma radiation in male albino rats. 硫代硫酸钠(硫化氢供体)改善雄性白化大鼠由环磷酰胺和/或电离伽马辐射引起的胰腺和肝脏损伤。
IF 2.7 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2025-10-29 DOI: 10.1186/s40360-025-01011-0
Ashraf Kassem, Eman F S Taha, Azza Hassan, Marwa A Ibrahim, Ahmed H Osman
{"title":"Sodium thiosulfate (hydrogen sulfide donor) ameliorates the pancreatic and liver damage induced by cyclophosphamide and/or ionizing gamma radiation in male albino rats.","authors":"Ashraf Kassem, Eman F S Taha, Azza Hassan, Marwa A Ibrahim, Ahmed H Osman","doi":"10.1186/s40360-025-01011-0","DOIUrl":"10.1186/s40360-025-01011-0","url":null,"abstract":"","PeriodicalId":9023,"journal":{"name":"BMC Pharmacology & Toxicology","volume":"26 1","pages":"178"},"PeriodicalIF":2.7,"publicationDate":"2025-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12570452/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145399920","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
BMC Pharmacology & Toxicology
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