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Industry perspective on Chinese hamster ovary cell 'omics' 中国仓鼠卵巢细胞组学的行业展望
Pub Date : 2014-11-19 DOI: 10.4155/PBP.14.48
Holger Laux
The biopharmaceutical sector has become a significant segment of pharmaceutical industry. More than 200 biopharmaceutical products have reached market approval and more than 350 additional products are currently in clinical trials [1]. Chinese hamster ovary (CHO) cells are the main host for production of recombinant therapeutic proteins. The 2011 CHO-produced biopharmaceutical sales were nearly US$60 billion [2]. Approximately 45% of new products approved in the period from 2006 to 2010 produced in CHO cells and seven out of ten of the world’s top-selling biopharmaceutical drugs are expressed in CHO cells [1]. Despite some progress in improving therapeutic protein productivity, the cellular machinery of CHO cells is still not well understood and consequently good knowledge of recombinant protein production is missing. Therefore, functional genomics to better understand and improve productivity of CHO cell lines in pharmaceutical and biotech industry is getting more and more relevant. This includes applied genomic screening as well as cell line engineering tools. Thanks to recent advances in decoding the CHO cell genome and transcriptome [3–6] novel cell line engineering technologies as gene knockout (e.g., zinc finger nucleases [ZFNs], transcription activator-like effector nucleases [TALENs], clustered regularly interspaced short palindromic repeats [CRISPRs]), RNA interference (e.g., si/shRNA) as well as overexpression or introduction of new genes can now be applied to modify CHO cell lines. The expectation is that the now available Chinese hamster genomic information will lead to better understanding of the expression of recombinant proteins in CHO cells. This includes the utilization of genomics/ transcriptomic tools (e.g., next-generation sequencing [NGS], expression/comparative genomics microarray techniques), proteomic tools (e.g., mass spectrometry [MS]), as well as metabolomic techniques (e.g., nuclear magnetic resonance spectroscopy).
生物制药行业已成为制药行业的重要组成部分。200多种生物制药产品已获得市场批准,另有350多种产品目前处于临床试验阶段。中国仓鼠卵巢(CHO)细胞是生产重组治疗蛋白的主要宿主。2011年,cho生产的生物制药销售额接近600亿美元。在2006年至2010年期间,大约45%的新产品是在CHO细胞中生产的,世界上最畅销的生物制药药物中有70%是在CHO细胞中表达的。尽管在提高治疗性蛋白产量方面取得了一些进展,但CHO细胞的细胞机制仍然没有得到很好的理解,因此缺乏重组蛋白生产的良好知识。因此,利用功能基因组学来更好地了解和提高CHO细胞系的生产力在制药和生物技术行业具有越来越重要的意义。这包括应用基因组筛选以及细胞系工程工具。由于CHO细胞基因组和转录组的最新研究进展[3-6],新的细胞系工程技术,如基因敲除(如锌指核酸酶[ZFNs]、转录激活因子样效应核酸酶[TALENs]、聚集规律间隔短回语重复序列[crispr])、RNA干扰(如si/shRNA)以及过表达或引入新基因,现在可以应用于修饰CHO细胞系。期望目前可用的中国仓鼠基因组信息将有助于更好地了解重组蛋白在CHO细胞中的表达。这包括基因组学/转录组学工具(例如,下一代测序[NGS],表达/比较基因组学微阵列技术),蛋白质组学工具(例如,质谱[MS])以及代谢组学技术(例如,核磁共振波谱)的利用。
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引用次数: 5
How to reconnect US academic and industrial researchers to better utilize Chinese hamster ovary ‘omics in bioprocessing 如何将美国学术界和工业界的研究人员联系起来,更好地利用中国仓鼠卵巢组学进行生物加工
Pub Date : 2014-11-19 DOI: 10.4155/PBP.14.43
S. Harcum
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引用次数: 2
Harnessing Chinese hamster ovary cell proteomics for biopharmaceutical processing 利用中国仓鼠卵巢细胞蛋白质组学进行生物制药加工
Pub Date : 2014-11-19 DOI: 10.4155/PBP.14.49
Amit Kumar, Kelley Heffner, J. Shiloach, M. Betenbaugh, Deniz Baycin-Hizal
Chinese hamster ovary (CHO) cell lines are the preferred host for manufacturing therapeutic proteins. The use of proteomics for recombinant protein production in CHO cells has expanded recently because of the ease in identifying protein levels and its potential to elucidate targets for improved growth and productivity. Coupling advanced analytical methods, labeling strategies and bioinformatics with mass spectrometry-based proteomics facilitates identification and quantification of large numbers of proteins. CHO proteomics studies have increased the knowledge of proteins that affect cell culture events, thereby facilitating media development and cell line engineering to increase growth and production, delay apoptosis and utilize nutrients more effectively. The applications of proteomics offers numerous ways for creating superior hosts and improving biotherapeutics production in CHO cells.
中国仓鼠卵巢(CHO)细胞系是制造治疗性蛋白的首选宿主。最近,蛋白质组学在CHO细胞重组蛋白生产中的应用得到了扩大,因为它易于识别蛋白质水平,并有可能阐明提高生长和生产力的目标。将先进的分析方法、标记策略和生物信息学与基于质谱的蛋白质组学相结合,有助于大量蛋白质的鉴定和定量。CHO蛋白质组学研究增加了对影响细胞培养事件的蛋白质的了解,从而促进了培养基的开发和细胞系工程,以增加生长和生产,延缓细胞凋亡,更有效地利用营养物质。蛋白质组学的应用为在CHO细胞中创造优质宿主和提高生物治疗药物的生产提供了许多方法。
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引用次数: 3
Toward genome-scale models of the Chinese hamster ovary cells: incentives, status and perspectives 中国仓鼠卵巢细胞基因组尺度模型的建立:动机、现状和展望
Pub Date : 2014-11-19 DOI: 10.4155/PBP.14.54
C. Kaas, Yuzhou Fan, D. Weilguny, C. Kristensen, H. F. Kildegaard, M. Andersen
Bioprocessing of the important Chinese hamster ovary (CHO) cell lines used for the production of biopharmaceuticals stands at the brink of several redefining events. In 2011, the field entered the genomics era, which has accelerated omics-based phenotyping of the cell lines. In this review we describe one possible application of this data: the generation of computational models for predictive and descriptive analysis of CHO cellular metabolism. We describe relevant advances in other organisms and how they can be applied to CHO cells. The immediate implications of the implementation of these methods will be accelerated development of the next generation of CHO cell lines and derived biopharmaceuticals.
用于生物制药生产的重要中国仓鼠卵巢(CHO)细胞系的生物加工正处于几个重新定义事件的边缘。2011年,该领域进入了基因组学时代,这加速了基于基因组学的细胞系表型分析。在这篇综述中,我们描述了这些数据的一种可能的应用:生成用于CHO细胞代谢预测和描述性分析的计算模型。我们描述了其他生物的相关进展,以及它们如何应用于CHO细胞。实施这些方法的直接影响将加速下一代CHO细胞系和衍生生物制药的开发。
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引用次数: 14
Statistical methods for mining Chinese hamster ovary cell 'omics data: from differential expression to integrated multilevel analysis of the biological system 挖掘中国仓鼠卵巢细胞组学数据的统计方法:从差异表达到生物系统的综合多层次分析
Pub Date : 2014-11-19 DOI: 10.4155/PBP.14.50
C. Clarke, N. Barron, P. Meleady, M. Clynes
Publication of Chinese hamster ovary (CHO) cell line and Chinese hamster genomes is accelerating efforts to increase the efficiency of biopharmaceutical manufacturing through greater understanding of CHO cell biology. It is hoped that this knowledge will lead to more predictable bioprocesses through the identification of biomarkers for culture monitoring and engineering of the CHO cell itself. If we are to translate the potential of the CHO systems biology era to industrial practice, the extraction of knowledge from complex genomic, proteomic, transcriptomic and metabolomic datasets will be critical. In this manuscript, we review the methods utilized to analyze expression profiling data and highlight the role of advanced statistics as we generate larger scale datasets and move toward integrated multi-omic analyses of the biological system.
中国仓鼠卵巢(CHO)细胞系和中国仓鼠基因组的发表,通过对CHO细胞生物学的进一步了解,加快了提高生物制药效率的努力。希望通过鉴定用于培养监测和CHO细胞本身工程的生物标志物,这些知识将导致更可预测的生物过程。如果我们要将CHO系统生物学时代的潜力转化为工业实践,从复杂的基因组学、蛋白质组学、转录组学和代谢组学数据集中提取知识将是至关重要的。在这篇文章中,我们回顾了用于分析表达谱数据的方法,并强调了高级统计学的作用,因为我们产生了更大规模的数据集,并朝着生物系统的综合多组学分析方向发展。
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引用次数: 5
Insights on biomarkers from Chinese hamster ovary omics studies 中国仓鼠卵巢组学研究中生物标志物的研究进展
Pub Date : 2014-11-19 DOI: 10.4155/PBP.14.45
Sarantos Kyriakopoulos, C. Kontoravdi
As efforts for selecting high-producing cells during cell line development are moving toward the use of high-throughput, automated methods, there is considerable promise for identifying suitable markers arising from transcriptomic, proteomic and metabolomic studies. Herein we discuss the opportunities presented from recent characterization studies of high producers as well as comparisons with non- and lower-producing clones. We further put forward unique characteristics of cell lines with high productivity, which can be used for cell line screening and genetic engineering.
随着在细胞系发育过程中选择高产细胞的努力正朝着使用高通量、自动化方法的方向发展,从转录组学、蛋白质组学和代谢组学研究中识别合适的标记具有相当大的前景。在这里,我们讨论了最近高产的特性研究以及与非和低产量无性系的比较所带来的机会。我们进一步提出了高产细胞系的独特特征,可用于细胞系筛选和基因工程。
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引用次数: 2
Opening the black box: Chinese hamster ovary research goes genome scale 打开黑盒子:中国仓鼠卵巢研究走向基因组尺度
Pub Date : 2014-11-19 DOI: 10.4155/PBP.14.42
N. Borth
The scientific community of Chinese hamster ovary (CHO)-cell scientists had a meeting to discuss the opportunities and requirements for a new era of genome scale science for CHO cells. With multiple genome sequences available, the challenge to the field is to use approaches of systems and synthetic biology to enhance quality and yield of recombinant therapeutics from CHO.
中国仓鼠卵巢(CHO)细胞科学家在科学界召开会议,讨论CHO细胞基因组尺度科学新时代的机遇和要求。随着多个基因组序列的可用,该领域面临的挑战是使用系统和合成生物学的方法来提高CHO重组疗法的质量和产量。
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引用次数: 9
Special Focus: an 'omics approach to Chinese hamster ovary based pharmaceutical bioprocessing 特别关注:基于中国仓鼠卵巢的药物生物加工的组学方法
Pub Date : 2014-11-19 DOI: 10.4155/PBP.14.51
C. Clarke, Kelvin H. Lee
Colin Clarke*,1 & Kelvin H Lee2 1The National Institute for Bioprocessing Research & Training, Dublin, Ireland 2Department of Chemical & Biomolecular Engineering, Delaware Biotechnology Institute, University of Delaware, Newark, DE 19711, USA *Author for correspondence: colin.clarke@nibrt.ie “...if recent advances in Chinese hamster ovary cell genome-scale science are to continue and the promise of better biopharmaceutical production is to become reality we must continue to foster collaboration between academics and researchers in industry.” Pharmaceutical Foreword
Colin Clarke*,1 & Kelvin H le2 1国家生物加工研究与培训研究所,都柏林,爱尔兰2化学与生物分子工程系,特拉华大学,纽瓦克,DE 19711,美国*通信作者:colin.clarke@nibrt.ie“…如果中国仓鼠卵巢细胞基因组规模科学的最新进展要继续下去,更好的生物制药生产的前景要成为现实,我们必须继续促进学术界和工业界研究人员之间的合作。”制药前言
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引用次数: 2
Chinese hamster ovary mutants for glycosylation engineering of biopharmaceuticals 用于生物制药糖基化工程的中国仓鼠卵巢突变体
Pub Date : 2014-11-19 DOI: 10.4155/PBP.14.37
P. Stanley
The Chinese hamster ovary (CHO) cell has long been the cell of choice for the biopharmaceutical industry. The reasons for this are partly historical and partly because CHO cells produce glycoproteins with a glycan complement similar to that synthesized by human cells. The CHO-DUKX-B11 line was established early in the development of the biotechnology industry and has the advantage of allowing selection for high expression of transgenes. In addition, CHO cells glycosylate glycoproteins with a subset of glycans typical of human cells and essentially lacking antigenic sugar residues like α(1,3)Gal, β(1,2)xylose or N-glycolylneuraminic acid, typical of rodent or plant cells. In addition, CHO cells have a pseudo-haploid genome allowing stable mutants with desirable properties to be readily isolated. It is becoming increasingly evident that the manipulation of glycosylation pathways to produce secreted glycoprotein therapeutics with glycans appropriate for optimal half-life, cellular targeting and functional activity, is very important. This editorial will discuss CHO glycosylation mutants that are currently available, and the potential for glycosylation engineering to produce optimal biopharmaceuticals in the future. CHO cell mutants with altered glycosylation were initially isolated by selection for resistance to the cytotoxicity of plant lectins [1]. Cells selected for resistance to one lectin, were often resistant to others with related glycan binding properties, and also hypersensitive to lectins recognizing sugars that became newly terminal due to the nature of the glycosylation defect. By comparing resistance to a panel of plant lectins, lectin-resistant mutants could be grouped into lectin resistance phenotypes. In addition, somatic cell hybridization was used to define genetic complementation groups. Once genes encoding glycosylation activities were cloned, mutations giving rise to each complementation group were identified and numerous allelic series defined. There are now a large number of CHO glycosylation mutants with known genetic and biochemical defects that may be used to engineer glycoproteins in order to optimize their properties. These include mutants that generate glycoproteins with modified N-glycans and/or O-glycans [2], glycosaminoglycans [3] or glycophosphotidylinositol-linked glycans [4]. However, for these mutants to be useful in the industrial level production of glycoprotein therapeutics, a specific glycosylation mutant must be employed from the very beginning of engineering a cell line for high productivity. While it is often stated that existing CHO mutant lines are not high producers, this may Pamela Stanley Department of Cell Biology, Albert Einstein College of Medicine, New York, NY 10461, USA pamela.stanley@einstein.yu.edu “...manipulation of glycosylation to enhance the properties of glycoproteins can be performed at any stage of the development of a production cell line using CRISPR/Cas9 technology.” SPECIAL FOCUS y
中国仓鼠卵巢细胞(CHO)长期以来一直是生物制药行业的首选细胞。造成这种情况的部分原因是历史原因,部分原因是CHO细胞产生的糖蛋白与人类细胞合成的糖补类似。CHO-DUKX-B11系是在生物技术产业发展的早期建立的,具有选择高表达转基因的优势。此外,CHO细胞将糖蛋白与人类细胞典型的一组聚糖结合在一起,基本上缺乏抗原糖残基,如α(1,3)Gal, β(1,2)木糖或n -糖基神经氨酸,这是啮齿动物或植物细胞的典型特征。此外,CHO细胞具有伪单倍体基因组,使得具有理想特性的稳定突变体易于分离。越来越明显的是,操纵糖基化途径以产生具有最佳半衰期、细胞靶向和功能活性的聚糖的分泌糖蛋白疗法是非常重要的。这篇社论将讨论目前可用的CHO糖基化突变体,以及糖基化工程在未来生产最佳生物制药的潜力。糖基化改变的CHO细胞突变体最初是通过对植物凝集素[1]细胞毒性的抗性选择分离出来的。对一种凝集素具有抗性的细胞通常对其他具有相关聚糖结合特性的细胞具有抗性,并且对由于糖基化缺陷的性质而成为新末端的凝集素敏感。通过比较对一组植物凝集素的抗性,凝集素抗性突变体可以分为凝集素抗性表型。此外,利用体细胞杂交技术确定遗传互补群。一旦编码糖基化活性的基因被克隆,产生每个互补组的突变就被确定,并定义了许多等位基因系列。现在有大量的CHO糖基化突变体具有已知的遗传和生化缺陷,可用于设计糖蛋白以优化其性能。这些突变体包括产生带有修饰的n -聚糖和/或o -聚糖[2]、糖胺聚糖[3]或糖磷酸酰肌醇连接聚糖[4]的糖蛋白。然而,为了使这些突变体在糖蛋白治疗药物的工业生产中发挥作用,必须从一开始就采用特定的糖基化突变体来设计高生产力的细胞系。虽然人们经常说现有的CHO突变系不是高产株,但这可能是帕梅拉·斯坦利细胞生物学系,阿尔伯特·爱因斯坦医学院,纽约,NY 10461,美国pamela.stanley@einstein.yu.edu“……利用CRISPR/Cas9技术,可以在生产细胞系的任何阶段进行糖基化操作以增强糖蛋白的特性。”用组学方法研究中国仓鼠卵巢药物生物加工
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引用次数: 3
Glycosylation analysis of Chinese hamster ovary produced glycoproteins 中国仓鼠卵巢产生糖蛋白的糖基化分析
Pub Date : 2014-11-19 DOI: 10.4155/PBP.14.53
M. Spearman, Edward D Bodnar, H. Perreault, M. Butler
Glycosylation is a critical quality attribute of biotherapeutics produced from mammalian cells. Small changes in the glycan structures may have profound effects on the efficacy and functions of the glycoprotein, such as fucosylation of the IgG glycan reducing the ability of the IgG to bind to the FcϒRIIIA receptor. Chinese hamster ovary produced glycoprotein biotherapeutics may contain antigenic glycan structures that must be defined and monitored. Therefore, structural analysis of glycans is a key component in the development and production of glycosylated products. We discuss the current techniques available for glycan, glycopeptide and whole glycoprotein analysis. We emphasize recent analytic developments in high-throughput automated methods, as well as, further refinement of methods for separation and identification of isomers and potentially antigenic structures.
糖基化是由哺乳动物细胞生产的生物治疗药物的关键质量属性。聚糖结构的微小变化可能对糖蛋白的功效和功能产生深远的影响,例如IgG聚糖的聚焦化降低了IgG与FcϒRIIIA受体结合的能力。中国仓鼠卵巢产生的糖蛋白生物治疗药物可能含有抗原聚糖结构,必须加以定义和监测。因此,聚糖的结构分析是糖基化产品开发和生产的关键环节。我们讨论了目前可用的聚糖、糖肽和全糖蛋白分析技术。我们强调了高通量自动化分析方法的最新发展,以及分离和鉴定异构体和潜在抗原结构方法的进一步改进。
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引用次数: 6
期刊
Pharmaceutical bioprocessing
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