Pub Date : 2026-01-29DOI: 10.1186/s12864-026-12588-z
Marcos Fernando Soares Costa, Sintia Silva de Almeida, Cristiano da Silva Monteiro, Vitor Trinca, Shujun Ou, Alessandro de Mello Varani, Vinicius Augusto Carvalho de Abreu
{"title":"EDTA-GUI: a plant-optimized graphical implementation of the EDTA pipeline enabling lineage-level classification and analysis.","authors":"Marcos Fernando Soares Costa, Sintia Silva de Almeida, Cristiano da Silva Monteiro, Vitor Trinca, Shujun Ou, Alessandro de Mello Varani, Vinicius Augusto Carvalho de Abreu","doi":"10.1186/s12864-026-12588-z","DOIUrl":"https://doi.org/10.1186/s12864-026-12588-z","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146084085","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-29DOI: 10.1186/s12864-026-12585-2
Samara T Choudhury, Cheryl P Andam
{"title":"Genome-wide co-occurrence patterns link mobile genetic elements, antimicrobial resistance and defense systems in Pseudomonas aeruginosa.","authors":"Samara T Choudhury, Cheryl P Andam","doi":"10.1186/s12864-026-12585-2","DOIUrl":"https://doi.org/10.1186/s12864-026-12585-2","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146084181","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-29DOI: 10.1186/s12864-025-12512-x
Andrew Ontano, Sheina B Sim, Jerry Jenkins, Scott M Geib, Anna K Childers, Brian Scheffler, Justin Vaughn
{"title":"Independent centromeric expansions define giant hornet genomes.","authors":"Andrew Ontano, Sheina B Sim, Jerry Jenkins, Scott M Geib, Anna K Childers, Brian Scheffler, Justin Vaughn","doi":"10.1186/s12864-025-12512-x","DOIUrl":"https://doi.org/10.1186/s12864-025-12512-x","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146084109","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-27DOI: 10.1186/s12864-026-12570-9
Lucy M Fitzgerald, Thibault Latrille, Anna Marcionetti, Théo Gaboriau, Diego A Hartasánchez, Nicolas Salamin
{"title":"Genomic basis of the evolution of vertical bars in clownfishes.","authors":"Lucy M Fitzgerald, Thibault Latrille, Anna Marcionetti, Théo Gaboriau, Diego A Hartasánchez, Nicolas Salamin","doi":"10.1186/s12864-026-12570-9","DOIUrl":"https://doi.org/10.1186/s12864-026-12570-9","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146059726","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Comprehensive analysis of the complete chloroplast genome of white pomegranate and phylogenetic relationships within Myrtales.","authors":"Lijuan Feng, Chuanzeng Wang, Mengmeng An, Haixia Tang, Zenghui Wang, Yanlei Yin","doi":"10.1186/s12864-025-12516-7","DOIUrl":"https://doi.org/10.1186/s12864-025-12516-7","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146059671","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-27DOI: 10.1186/s12864-026-12565-6
Swati Tyagi, Bodhika Singh, Mala Singh, Vikrant Gupta
{"title":"Comparative transcriptome analysis reveals ABI3/VP1-WRKY25-STR1 regulatory module linking specialized metabolism with root system development and stress response in Rauvolfia serpentina.","authors":"Swati Tyagi, Bodhika Singh, Mala Singh, Vikrant Gupta","doi":"10.1186/s12864-026-12565-6","DOIUrl":"https://doi.org/10.1186/s12864-026-12565-6","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146059717","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}