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EDTA-GUI: a plant-optimized graphical implementation of the EDTA pipeline enabling lineage-level classification and analysis. EDTA- gui: EDTA管道的工厂优化图形实现，支持谱系级分类和分析。
IF 3.7 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
BMC Genomics
Pub Date : 2026-01-29 DOI: 10.1186/s12864-026-12588-z
Marcos Fernando Soares Costa, Sintia Silva de Almeida, Cristiano da Silva Monteiro, Vitor Trinca, Shujun Ou, Alessandro de Mello Varani, Vinicius Augusto Carvalho de Abreu
{"title":"EDTA-GUI: a plant-optimized graphical implementation of the EDTA pipeline enabling lineage-level classification and analysis.","authors":"Marcos Fernando Soares Costa, Sintia Silva de Almeida, Cristiano da Silva Monteiro, Vitor Trinca, Shujun Ou, Alessandro de Mello Varani, Vinicius Augusto Carvalho de Abreu","doi":"10.1186/s12864-026-12588-z","DOIUrl":"https://doi.org/10.1186/s12864-026-12588-z","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146084085","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome-wide co-occurrence patterns link mobile genetic elements, antimicrobial resistance and defense systems in Pseudomonas aeruginosa. 全基因组共发生模式将铜绿假单胞菌的移动遗传元件，抗菌素耐药性和防御系统联系起来。
IF 3.7 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
BMC Genomics
Pub Date : 2026-01-29 DOI: 10.1186/s12864-026-12585-2
Samara T Choudhury, Cheryl P Andam
{"title":"Genome-wide co-occurrence patterns link mobile genetic elements, antimicrobial resistance and defense systems in Pseudomonas aeruginosa.","authors":"Samara T Choudhury, Cheryl P Andam","doi":"10.1186/s12864-026-12585-2","DOIUrl":"https://doi.org/10.1186/s12864-026-12585-2","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146084181","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Independent centromeric expansions define giant hornet genomes. 独立的着丝粒扩展定义了巨大的大黄蜂基因组。
IF 3.7 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
BMC Genomics
Pub Date : 2026-01-29 DOI: 10.1186/s12864-025-12512-x
Andrew Ontano, Sheina B Sim, Jerry Jenkins, Scott M Geib, Anna K Childers, Brian Scheffler, Justin Vaughn
{"title":"Independent centromeric expansions define giant hornet genomes.","authors":"Andrew Ontano, Sheina B Sim, Jerry Jenkins, Scott M Geib, Anna K Childers, Brian Scheffler, Justin Vaughn","doi":"10.1186/s12864-025-12512-x","DOIUrl":"https://doi.org/10.1186/s12864-025-12512-x","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146084109","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome-wide identification and expression profiling of the NHX gene family in oat (Avena sativa L.). 燕麦NHX基因家族的全基因组鉴定和表达谱分析。
IF 3.7 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
BMC Genomics
Pub Date : 2026-01-29 DOI: 10.1186/s12864-026-12519-y
Yuqi Li, Meifeng Liu, Wenjie Zhao, Feng Yuan, Zhenyu Jia, Yi Wang, Wendong Zheng, Chengchen Pan, Chunxiang Fu
{"title":"Genome-wide identification and expression profiling of the NHX gene family in oat (Avena sativa L.).","authors":"Yuqi Li, Meifeng Liu, Wenjie Zhao, Feng Yuan, Zhenyu Jia, Yi Wang, Wendong Zheng, Chengchen Pan, Chunxiang Fu","doi":"10.1186/s12864-026-12519-y","DOIUrl":"https://doi.org/10.1186/s12864-026-12519-y","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146084142","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multicondition expression profiling reveals limitations of canonical housekeeping genes. 多条件表达谱揭示了规范管家基因的局限性。
IF 3.7 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
BMC Genomics
Pub Date : 2026-01-27 DOI: 10.1186/s12864-026-12563-8
Elias Projahn, Michael Walter, Georg Fuellen, Steffen Möller
{"title":"Multicondition expression profiling reveals limitations of canonical housekeeping genes.","authors":"Elias Projahn, Michael Walter, Georg Fuellen, Steffen Möller","doi":"10.1186/s12864-026-12563-8","DOIUrl":"https://doi.org/10.1186/s12864-026-12563-8","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146059647","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genomic basis of the evolution of vertical bars in clownfishes. 小丑鱼垂直条纹进化的基因组基础。
IF 3.7 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
BMC Genomics
Pub Date : 2026-01-27 DOI: 10.1186/s12864-026-12570-9
Lucy M Fitzgerald, Thibault Latrille, Anna Marcionetti, Théo Gaboriau, Diego A Hartasánchez, Nicolas Salamin
{"title":"Genomic basis of the evolution of vertical bars in clownfishes.","authors":"Lucy M Fitzgerald, Thibault Latrille, Anna Marcionetti, Théo Gaboriau, Diego A Hartasánchez, Nicolas Salamin","doi":"10.1186/s12864-026-12570-9","DOIUrl":"https://doi.org/10.1186/s12864-026-12570-9","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146059726","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comprehensive analysis of the complete chloroplast genome of white pomegranate and phylogenetic relationships within Myrtales. 白石榴叶绿体全基因组的综合分析及桃金娘属植物的系统发育关系。
IF 3.7 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
BMC Genomics
Pub Date : 2026-01-27 DOI: 10.1186/s12864-025-12516-7
Lijuan Feng, Chuanzeng Wang, Mengmeng An, Haixia Tang, Zenghui Wang, Yanlei Yin
{"title":"Comprehensive analysis of the complete chloroplast genome of white pomegranate and phylogenetic relationships within Myrtales.","authors":"Lijuan Feng, Chuanzeng Wang, Mengmeng An, Haixia Tang, Zenghui Wang, Yanlei Yin","doi":"10.1186/s12864-025-12516-7","DOIUrl":"https://doi.org/10.1186/s12864-025-12516-7","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146059671","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comprehensive analysis of chloroplast genome evolution in Poaceae: codon usage patterns, selection pressures, and phylogenomic relationships. 禾科植物叶绿体基因组进化的综合分析：密码子使用模式、选择压力和系统基因组关系。
IF 3.7 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
BMC Genomics
Pub Date : 2026-01-27 DOI: 10.1186/s12864-025-12498-6
Xiaohe Geng, Ying Xue, Haodi Wang, Hao Tu, Rui Jing, Zixiong Li, Yunpeng Gai
{"title":"Comprehensive analysis of chloroplast genome evolution in Poaceae: codon usage patterns, selection pressures, and phylogenomic relationships.","authors":"Xiaohe Geng, Ying Xue, Haodi Wang, Hao Tu, Rui Jing, Zixiong Li, Yunpeng Gai","doi":"10.1186/s12864-025-12498-6","DOIUrl":"https://doi.org/10.1186/s12864-025-12498-6","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146059715","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative transcriptome analysis reveals ABI3/VP1-WRKY25-STR1 regulatory module linking specialized metabolism with root system development and stress response in Rauvolfia serpentina. 比较转录组分析揭示了ABI3/VP1-WRKY25-STR1调控模块将特殊代谢与根系统发育和胁迫反应联系起来。
IF 3.7 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
BMC Genomics
Pub Date : 2026-01-27 DOI: 10.1186/s12864-026-12565-6
Swati Tyagi, Bodhika Singh, Mala Singh, Vikrant Gupta
{"title":"Comparative transcriptome analysis reveals ABI3/VP1-WRKY25-STR1 regulatory module linking specialized metabolism with root system development and stress response in Rauvolfia serpentina.","authors":"Swati Tyagi, Bodhika Singh, Mala Singh, Vikrant Gupta","doi":"10.1186/s12864-026-12565-6","DOIUrl":"https://doi.org/10.1186/s12864-026-12565-6","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146059717","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Analysis of the variation and genetic stability of chloroplast genome of Pinus taeda. 红松叶绿体基因组变异及遗传稳定性分析。
IF 3.7 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
BMC Genomics
Pub Date : 2026-01-27 DOI: 10.1186/s12864-025-12504-x
Ling Wang, Kaibin Jiang, Liangyu Cao, Jiawen Yu, Jimeng Sun, Chunxin Liu, Shaowei Huang, Tianyi Liu
{"title":"Analysis of the variation and genetic stability of chloroplast genome of Pinus taeda.","authors":"Ling Wang, Kaibin Jiang, Liangyu Cao, Jiawen Yu, Jimeng Sun, Chunxin Liu, Shaowei Huang, Tianyi Liu","doi":"10.1186/s12864-025-12504-x","DOIUrl":"https://doi.org/10.1186/s12864-025-12504-x","url":null,"abstract":"","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146050244","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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