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The effects of killer cell immunoglobulin-like receptor (KIR) genes on susceptibility to severe COVID-19 in the Iranian population. 伊朗人群中杀伤细胞免疫球蛋白样受体(KIR)基因对重症 COVID-19 易感性的影响。
IF 2.9 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-06-28 DOI: 10.1186/s12865-024-00631-1
Narges Karami, Shaghik Barani, Mona Fani, Seppo Meri, Reza Shafiei, Kurosh Kalantar

Background: Variations in the innate and adaptive immune response systems are linked to variations in the severity of COVID-19. Natural killer cell (NK) function is regulated by sophisticated receptor system including Killer-cell immunoglobulin-like receptor (KIR) family. We aimed to investigate the impact of possessing certain KIR genes and genotypes on COVID19 severity in Iranians. KIR genotyping was performed on 394 age/sex matched Iranians with no underlying conditions who developed mild and severe COVID- 19. The presence and/or absence of 11 KIR genes were determined using the PCR with sequence specific primers (PCR-SSP).

Results: Patients with mild symptoms had higher frequency ofKIR2DS1 (p = 0.004) and KIR2DS2 (p = 0.017) genes compared to those with severe disease. While KIR3DL3 and deleted variant of KIR2DS4 occurred more frequently in patients who developed a severe form of the disease. In this study, a significant increase of and B haplotype was observed in the Mild group compared to the Severe group (respectively, p = 0.002 and p = 0.02). Also, the prevalence of haplotype A was significantly higher in the Severe group than in the Mild group (p = 0.02).

Conclusions: These results suggest that the KIR2DS1, KIR2DS, and B haplotype maybe have a protective effect against COVID-19 severity. The results also suggest the inhibitory gene KIR2DL3 and haplotype A are risk factors for the severity of COVID-19.

背景:先天性和适应性免疫反应系统的变化与 COVID-19 严重程度的变化有关。自然杀伤细胞(NK)的功能受到包括杀伤细胞免疫球蛋白样受体(KIR)家族在内的复杂受体系统的调控。我们的目的是调查拥有某些 KIR 基因和基因型对伊朗人 COVID19 严重程度的影响。我们对 394 名年龄/性别匹配的伊朗人进行了 KIR 基因分型,这些人没有任何潜在疾病,但都患上了轻度和重度 COVID- 19。使用序列特异性引物 PCR(PCR-SSP)测定了 11 个 KIR 基因的存在和/或缺失情况:结果:与重症患者相比,轻症患者的 KIR2DS1(p = 0.004)和 KIR2DS2(p = 0.017)基因频率较高。而 KIR3DL3 和 KIR2DS4 的缺失变体在重症患者中出现的频率更高。在这项研究中,与重症组相比,轻症组中的和 B 单倍型明显增加(分别为 p = 0.002 和 p = 0.02)。此外,重度组的单倍型 A 的流行率也明显高于轻度组(p = 0.02):这些结果表明,KIR2DS1、KIR2DS 和 B 单倍型可能对 COVID-19 严重程度有保护作用。结果还表明,抑制基因 KIR2DL3 和单倍型 A 是导致 COVID-19 严重程度的危险因素。
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引用次数: 0
Systemic treatment options for non-small cell lung cancer after failure of previous immune checkpoint inhibitors: a bayesian network meta-analysis based on randomized controlled trials. 免疫检查点抑制剂治疗失败后的非小细胞肺癌全身治疗方案:基于随机对照试验的贝叶斯网络荟萃分析。
IF 2.9 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-06-28 DOI: 10.1186/s12865-024-00633-z
Kang Wang, Zhenxue Fu, Guanxing Sun, Yancui Ran, Nannan Lv, Enbo Wang, Huan Ding

Background: Although immune checkpoint inhibitors (ICIs) have brought survival benefits to non-small cell lung cancer (NSCLC), disease progression still occurs, and there is no consensus on the treatment options for these patients. We designed a network meta-analysis (NMA) to evaluate systemic treatment options for NSCLC after failure of ICIs.

Methods: PubMed, Embase, Web of Science and Cochrane Library databases were searched, then literature screening was followed by NMA. We included all Phase II and III randomized controlled trials (RCTs). Progression-free survival (PFS) and overall survival (OS) used hazard ratio (HR) for evaluation. Objective response rate (ORR) and adverse events (AEs) used odds ratio (OR) and relative risk (RR) effect sizes, respectively. R software was applied to compare the Bayesian NMA results.

Results: We finally included 6 studies. 1322 patients received ICI plus Chemotherapy (ICI + Chemo), ICI plus Anti-angiogenic monoclonal antibody (ICI + Antiangio-Ab), ICI plus Tyrosine kinase inhibitor (ICI + TKI), Tyrosine kinase inhibitor plus Chemotherapy (TKI + Chemo), Standard of Care (SOC), Chemotherapy (Chemo). TKI + Chemo is associated with longer PFS, higher ORR (surface under cumulative ranking curve [SUCRA], 99.7%, 88.2%), ICI + TKI achieved the longest OS (SUCRA, 82.7%). ICI + Antiangio-Ab was granted the highest safety rating for adverse events (AEs) of any grade, AEs greater than or equal to grade 3 and AEs of any grade leading to discontinuation of treatment (SUCRA, 95%, 82%, 93%).

Conclusions: For NSCLC after failure of ICIs, TKI + Chemo was associated with longer PFS and higher ORR, while ICI + TKI was associated with the longest OS. In terms of safety, ICI + Antiangio-Ab was the highest.

背景:尽管免疫检查点抑制剂(ICIs)为非小细胞肺癌(NSCLC)带来了生存益处,但疾病进展仍时有发生,而且对于这些患者的治疗方案尚未达成共识。我们设计了一项网络荟萃分析(NMA)来评估 ICIs 治疗失败后 NSCLC 的系统治疗方案:方法:检索了 PubMed、Embase、Web of Science 和 Cochrane Library 数据库,然后进行文献筛选和 NMA。我们纳入了所有II期和III期随机对照试验(RCT)。无进展生存期(PFS)和总生存期(OS)采用危险比(HR)进行评估。客观反应率(ORR)和不良事件(AEs)分别采用了几率比(OR)和相对风险(RR)效应大小。应用 R 软件比较贝叶斯 NMA 结果:我们最终纳入了 6 项研究。1322名患者接受了ICI+化疗(ICI + Chemo)、ICI+抗血管生成单克隆抗体(ICI + Antiangio-Ab)、ICI+酪氨酸激酶抑制剂(ICI + TKI)、酪氨酸激酶抑制剂+化疗(TKI + Chemo)、标准护理(SOC)、化疗(Chemo)。TKI+化疗可获得更长的PFS和更高的ORR(累积排名曲线下表面值[SUCRA],99.7%和88.2%),ICI+TKI可获得最长的OS(SUCRA,82.7%)。在任何级别的不良事件(AEs)、大于或等于3级的不良事件以及导致停止治疗的任何级别的不良事件(SUCRA,95%,82%,93%)方面,ICI + Antiangio-Ab的安全性评分最高:对于使用 ICIs 治疗失败的 NSCLC 患者,TKI + 化疗可获得更长的 PFS 和更高的 ORR,而 ICI + TKI 可获得最长的 OS。就安全性而言,ICI + 抗原抗体的安全性最高。
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引用次数: 0
Immune-mediated inflammatory diseases and periodontal disease: a bidirectional two-sample mendelian randomization study. 免疫介导的炎症性疾病与牙周病:双向双样本泯灭随机研究。
IF 2.9 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-06-28 DOI: 10.1186/s12865-024-00634-y
Rui Zhang, Hairong Ma, Dan Wang, Hualin Zhang

Background: Previous observational studies have shown a bidirectional association between immune-mediated inflammatory disorders (IMID) and periodontal disease. However, evidence regarding the causal role of IMID and periodontal disease is still lacking. Therefore, we conducted a bidirectional two-sample Mendelian randomization (MR) study to uncover the potential genetic causal effects between IMID and periodontal disease.

Methods: Bidirectional two-sample MR analysis was employed. Data for ten IMIDs were sourced from genome-wide association studies (GWAS) conducted by the FinnGen Consortium (range from 1023 to 36321 cases) and UK Biobank (UKB) (range from 150 to 17574 cases). Furthermore, GWAS data for periodontal disease were obtained from the FinnGen Consortium (87497 cases), UKB (458 cases), and Gene Lifestyle Interactions in Dental Endpoints (GLIDE) consortium (17,353 periodontitis cases). Subsequently, the causal relationships were analyzed by random effects inverse variance weighting, weighted median, and MR-Egger. Sensitivity analyses were performed using the Cochrane Q test, funnel plot, and Mr-Egger intercept test to ensure robustness. Eventually, replication analysis and meta-analysis across different databases were carried out.

Results: Systemic lupus erythematosus (SLE) [IVW: OR = 1.079 (95% CI: 1.032-1.128) and P < 0.001], Sjogren syndrome [IVW: OR = 1.082 (95% CI: 1.012-1.157) and P = 0.022] and hypothyroidism [IVW: OR = 1.52 (95% CI: 1.13-2.04) and P = 0.005] may increase the risk of periodontal disease. In addition, periodontal disease may reduce the risk of SLE [IVW: OR = 0.8079 (95% CI: 0.6764-0.9650) and P = 0.019] and hyperthyroidism [IVW: OR = 5.59*10-9 (95% CI: 1.43*10-15-2.18*10-2) and P = 0.014]. Meta-analysis indicated a causal correlation between SLE and an increased risk of periodontal disease: [OR = 1.08 (95% CI: 1.03-1.13), P = 0.0009]. No significant evidence suggests bilateral causal relationships between other IMIDs and periodontal disease. No significant estimation of heterogeneity or pleiotropy is detected.

Conclusions: Our study has confirmed a genetic causal relationship between IMIDs and periodontal disease, thereby unveiling novel potential mechanisms underlying IMIDs and periodontal disease. This discovery is promising in fostering interdisciplinary collaboration between clinicians and stomatologists to facilitate appropriate and precise screening, prevention, and early treatment of IMIDs and periodontal disease.

背景:以往的观察性研究表明,免疫介导的炎症性疾病(IMID)与牙周病之间存在双向关联。然而,有关 IMID 与牙周病之间因果关系的证据仍然缺乏。因此,我们进行了一项双向双样本孟德尔随机化(MR)研究,以揭示IMID与牙周病之间潜在的遗传因果效应:方法:采用双向双样本 MR 分析。10种IMID的数据来自芬兰基因联盟(FinnGen Consortium)(病例数从1023例到36321例不等)和英国生物库(UKB)(病例数从150例到17574例不等)开展的全基因组关联研究(GWAS)。此外,我们还从芬兰基因联盟(87497 个病例)、英国生物库(458 个病例)和牙科终点基因生活方式相互作用联盟(GLIDE)(17353 个牙周炎病例)获得了牙周病的 GWAS 数据。随后,通过随机效应逆方差加权、加权中位数和 MR-Egger 分析了因果关系。为确保稳健性,使用 Cochrane Q 检验、漏斗图和 Mr-Egger 截距检验进行了敏感性分析。最后,在不同的数据库中进行了重复分析和荟萃分析:系统性红斑狼疮(SLE)[IVW:OR = 1.079(95% CI:1.032-1.128),P -9(95% CI:1.43*10-15-2.18*10-2),P = 0.014]。元分析表明系统性红斑狼疮与牙周病风险增加之间存在因果关系:[或 = 1.08(95% 置信区间:1.03-1.13),P = 0.0009]。没有重要证据表明其他 IMID 与牙周病之间存在双边因果关系。没有发现明显的异质性或多义性估计:我们的研究证实了 IMIDs 与牙周病之间的遗传因果关系,从而揭示了 IMIDs 与牙周病之间潜在的新机制。这一发现有望促进临床医生和口腔科医生之间的跨学科合作,从而促进对 IMIDs 和牙周病进行适当、精确的筛查、预防和早期治疗。
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引用次数: 0
Upregulated miR-146b-3p predicted rheumatoid arthritis development and regulated TNF-α-induced excessive proliferation, motility, and inflammation in MH7A cells. miR-146b-3p的上调预示着类风湿性关节炎的发展,并调控TNF-α诱导的MH7A细胞过度增殖、运动和炎症。
IF 2.9 4区 医学 Q3 Immunology and Microbiology Pub Date : 2024-06-20 DOI: 10.1186/s12865-024-00629-9
Linxiao Ma, Huijie Liu, Ping Shao, Qian Lv

Background: Rheumatoid arthritis (RA) is a chronic immune system disease with a high disability rate threatening the living quality of patients. Identifying potential biomarkers for RA is of necessity to improve the prevention and management of RA.

Objectives: This study focused on miR-146b-3p evaluating its clinical significance and revealing the underlying regulatory mechanisms.

Materials and methods: A total of 107 RA patients were enrolled, and both serum and synovial tissues were collected. Another 78 osteoarthritis patients (OA, providing synovial tissues), and 72 healthy individuals (providing serum samples) were enrolled as the control group. The expression of miR-146b-3p was analyzed by PCR and analyzed with ROC and Pearson correlation analyses evaluating its significance in diagnosis and development prediction of RA patients. In vitro, MH7A cells were treated with TNF-α. The regulation of cell proliferation, motility, and inflammation by miR-146b-3p was assessed by CCK8, Transwell, and ELISA assays.

Results: Significant upregulation of miR-146b-3p was observed in serum and synovial tissues of RA patients, which distinguished RA patients and were positively correlated with the erythrocyte sedimentation rate (ESR), C-reactive protein (CRP), anti-cyclic citrullinated peptide antibodies (anti-CCP), and rheumatoid factor (RF) of RA patients. TNF-α promoted the proliferation and motility of MH7A cells and induced significant inflammation in cells. Silencing miR-146b-3p alleviated the effect of TNF-α and negatively regulated the expression of HMGCR. The knockdown of HMGCR reversed the protective effect of miR-146b-3p silencing on TNF-α-stimulated MH7A cells.

Conclusions: Increased miR-146b-3p served as a biomarker for the diagnosis and severity of RA. Silencing miR-146b-3p could suppress TNF-α-induced excessive proliferation, motility, and inflammation via regulating HMGCR in MH7A cells.

背景:类风湿关节炎(RA)是一种慢性免疫系统疾病,其高致残率威胁着患者的生活质量。确定 RA 的潜在生物标志物对于改善 RA 的预防和管理非常必要:本研究重点关注 miR-146b-3p,评估其临床意义并揭示其潜在调控机制:共纳入 107 例 RA 患者,采集血清和滑膜组织。材料:共收集了 107 名 RA 患者的血清和滑膜组织,另外 78 名骨关节炎患者(OA,提供滑膜组织)和 72 名健康人(提供血清样本)作为对照组。通过 PCR 分析 miR-146b-3p 的表达,并用 ROC 和 Pearson 相关性分析评估其在 RA 患者诊断和发展预测中的意义。在体外,用 TNF-α 处理 MH7A 细胞。通过CCK8、Transwell和ELISA试验评估了miR-146b-3p对细胞增殖、运动和炎症的调控作用:结果:在 RA 患者的血清和滑膜组织中观察到 miR-146b-3p 的显著上调,这与 RA 患者的红细胞沉降率(ESR)、C 反应蛋白(CRP)、抗环瓜氨酸肽抗体(anti-CCP)和类风湿因子(RF)呈正相关。TNF-α 促进了 MH7A 细胞的增殖和运动,并诱发了细胞的明显炎症。沉默miR-146b-3p可减轻TNF-α的影响,并负向调节HMGCR的表达。HMGCR的敲除逆转了沉默miR-146b-3p对TNF-α刺激的MH7A细胞的保护作用:结论:miR-146b-3p的增加可作为诊断RA及其严重程度的生物标志物。沉默miR-146b-3p可通过调节HMGCR抑制TNF-α诱导的MH7A细胞过度增殖、运动和炎症。
{"title":"Upregulated miR-146b-3p predicted rheumatoid arthritis development and regulated TNF-α-induced excessive proliferation, motility, and inflammation in MH7A cells.","authors":"Linxiao Ma, Huijie Liu, Ping Shao, Qian Lv","doi":"10.1186/s12865-024-00629-9","DOIUrl":"10.1186/s12865-024-00629-9","url":null,"abstract":"<p><strong>Background: </strong>Rheumatoid arthritis (RA) is a chronic immune system disease with a high disability rate threatening the living quality of patients. Identifying potential biomarkers for RA is of necessity to improve the prevention and management of RA.</p><p><strong>Objectives: </strong>This study focused on miR-146b-3p evaluating its clinical significance and revealing the underlying regulatory mechanisms.</p><p><strong>Materials and methods: </strong>A total of 107 RA patients were enrolled, and both serum and synovial tissues were collected. Another 78 osteoarthritis patients (OA, providing synovial tissues), and 72 healthy individuals (providing serum samples) were enrolled as the control group. The expression of miR-146b-3p was analyzed by PCR and analyzed with ROC and Pearson correlation analyses evaluating its significance in diagnosis and development prediction of RA patients. In vitro, MH7A cells were treated with TNF-α. The regulation of cell proliferation, motility, and inflammation by miR-146b-3p was assessed by CCK8, Transwell, and ELISA assays.</p><p><strong>Results: </strong>Significant upregulation of miR-146b-3p was observed in serum and synovial tissues of RA patients, which distinguished RA patients and were positively correlated with the erythrocyte sedimentation rate (ESR), C-reactive protein (CRP), anti-cyclic citrullinated peptide antibodies (anti-CCP), and rheumatoid factor (RF) of RA patients. TNF-α promoted the proliferation and motility of MH7A cells and induced significant inflammation in cells. Silencing miR-146b-3p alleviated the effect of TNF-α and negatively regulated the expression of HMGCR. The knockdown of HMGCR reversed the protective effect of miR-146b-3p silencing on TNF-α-stimulated MH7A cells.</p><p><strong>Conclusions: </strong>Increased miR-146b-3p served as a biomarker for the diagnosis and severity of RA. Silencing miR-146b-3p could suppress TNF-α-induced excessive proliferation, motility, and inflammation via regulating HMGCR in MH7A cells.</p>","PeriodicalId":9040,"journal":{"name":"BMC Immunology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11188492/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141431359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Humoral immune response and safety of Sars-Cov-2 vaccine in people with multiple sclerosis. 多发性硬化症患者对 Sars-Cov-2 疫苗的体液免疫反应和安全性。
IF 2.9 4区 医学 Q3 Immunology and Microbiology Pub Date : 2024-06-19 DOI: 10.1186/s12865-024-00628-w
Seyedeh Sadigheh Hamzavi, Rosemina Bahrololoom, Sepideh Saeb, Nahid Heydari Marandi, Marzieh Hosseini, Alimohammad Keshtvarz Hesam Abadi, Marzieh Jamalidoust

Background: For the past three years, the pandemic has had a major effect on global public health, mainly on those with underlying medical conditions, such as people living with Multiple Sclerosis. Vaccination among this group is of great importance, and the long-term impacts of vaccination and its safety on the health of these patients will continue to be revealed. Therefore, risks related to vaccination and immune response need to be assessed. The objective here was to characterize the immune response, short-term safety, and the effects of multiple variables on these factors after COVID-19 vaccination (mainly Sinopharm) among people with Multiple Sclerosis. We assessed the short-term safety and humoral SARS-COV-2 anti-RBD IgG response using a data collection form and Immunoassay, respectively.

Results: No severe adverse events or MS relapse was observed. Myalgia/body pain (26.7%), low-grade fever (22.2%), and mild headache (15.6%) were the most common adverse events. The use and type of vaccine influenced the frequency of side effects with a p-value < 0.0001. Regarding immune response, patients on rituximab and fingolimod had a lower antibody titer compared to other medications. With a significant difference, hybrid immunity (p-value: 0.047) and type of DMTs (p-value: 0.017) affected the humoral response.

Conclusion: There is a low incidence of serious adverse effects, MS worsening or relapse after COVID-19 vaccination, and mainly, side effects are similar to that of the general population. It appears that treatment with various disease-modifying therapies does not induce or worsen the post-vaccination side effects, although some, including Rituximab and fingolimod, may affect the immunity induced after vaccination.

背景:在过去的三年中,大流行病对全球公共卫生产生了重大影响,主要是对那些患有基础疾病的人,如多发性硬化症患者。在这一群体中接种疫苗具有重要意义,接种疫苗及其安全性对这些患者健康的长期影响将不断被揭示。因此,需要对与疫苗接种和免疫反应相关的风险进行评估。本文旨在描述多发性硬化症患者接种 COVID-19 疫苗(主要是国药集团)后的免疫反应、短期安全性以及多种变量对这些因素的影响。我们使用数据收集表和免疫测定法分别评估了短期安全性和体液SARS-COV-2抗RBD IgG反应:结果:未观察到严重不良事件或多发性硬化症复发。肌痛/身体疼痛(26.7%)、低烧(22.2%)和轻微头痛(15.6%)是最常见的不良反应。疫苗的使用和类型会影响副作用的发生频率,P 值为 结论:严重副作用的发生率较低:接种 COVID-19 疫苗后,严重不良反应、多发性硬化症恶化或复发的发生率较低,主要是副作用与普通人群相似。尽管包括利妥昔单抗和芬戈莫德在内的一些疗法可能会影响疫苗接种后诱导的免疫力,但各种疾病修饰疗法似乎不会诱导或加重疫苗接种后的副作用。
{"title":"Humoral immune response and safety of Sars-Cov-2 vaccine in people with multiple sclerosis.","authors":"Seyedeh Sadigheh Hamzavi, Rosemina Bahrololoom, Sepideh Saeb, Nahid Heydari Marandi, Marzieh Hosseini, Alimohammad Keshtvarz Hesam Abadi, Marzieh Jamalidoust","doi":"10.1186/s12865-024-00628-w","DOIUrl":"10.1186/s12865-024-00628-w","url":null,"abstract":"<p><strong>Background: </strong>For the past three years, the pandemic has had a major effect on global public health, mainly on those with underlying medical conditions, such as people living with Multiple Sclerosis. Vaccination among this group is of great importance, and the long-term impacts of vaccination and its safety on the health of these patients will continue to be revealed. Therefore, risks related to vaccination and immune response need to be assessed. The objective here was to characterize the immune response, short-term safety, and the effects of multiple variables on these factors after COVID-19 vaccination (mainly Sinopharm) among people with Multiple Sclerosis. We assessed the short-term safety and humoral SARS-COV-2 anti-RBD IgG response using a data collection form and Immunoassay, respectively.</p><p><strong>Results: </strong>No severe adverse events or MS relapse was observed. Myalgia/body pain (26.7%), low-grade fever (22.2%), and mild headache (15.6%) were the most common adverse events. The use and type of vaccine influenced the frequency of side effects with a p-value < 0.0001. Regarding immune response, patients on rituximab and fingolimod had a lower antibody titer compared to other medications. With a significant difference, hybrid immunity (p-value: 0.047) and type of DMTs (p-value: 0.017) affected the humoral response.</p><p><strong>Conclusion: </strong>There is a low incidence of serious adverse effects, MS worsening or relapse after COVID-19 vaccination, and mainly, side effects are similar to that of the general population. It appears that treatment with various disease-modifying therapies does not induce or worsen the post-vaccination side effects, although some, including Rituximab and fingolimod, may affect the immunity induced after vaccination.</p>","PeriodicalId":9040,"journal":{"name":"BMC Immunology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-06-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11186195/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141426295","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The immune factors have complex causal regulation effects on kidney stone disease: a mendelian randomization study. 免疫因素对肾结石病具有复杂的因果调节作用:一项孟德尔随机研究。
IF 3 4区 医学 Q3 Immunology and Microbiology Pub Date : 2024-06-14 DOI: 10.1186/s12865-024-00627-x
Dongfeng Yuan, Junyi Yang, Weisong Wu, Yirixiatijiang Amier, Xianmiu Li, Wenlong Wan, Yisheng Huang, Jiabo Li, Xiao Yu

Purpose: Previous studies have reported the potential impact of immune cells on kidney stone disease (KSD), but definitive causal relationships have yet to be established. The purpose of this paper is to elucidate the potential causal association between immune cells and KSD by Mendelian randomization (MR) analysis.

Methods: In our study, a thorough two-sample Mendelian randomization (MR) analysis was performed by us to determine the potential causal relationship between immune cell traits and kidney stone disease. We included a total of four immune traits (median fluorescence intensity (MFI), relative cellular (RC), absolute cellular (AC), and morphological parameters (MP)), which are publicly available data. GWAS summary data related to KSD (9713 cases and 366,693 controls) were obtained from the FinnGen consortium. The primary MR analysis method was Inverse variance weighted. Cochran's Q test, MR Egger, and MR-Pleiotropy RESidual Sum and Outlier (MR-PRESSO) were used to assess the stability of the results.

Results: After FDR correction, the CD8 on HLA DR + CD8br (OR = 0.95, 95% CI = 0.93-0.98, p-value = 7.20 × 10- 4, q-value = 0.088) was determined to be distinctly associated with KSD, and we also found other 25 suggestive associations between immune cells and KSD, of which 13 associations were suggested as protective factors and 12 associations were suggested as risk factors. There was no horizontal pleiotropy or significant heterogeneity in our MR analysis, as determined by the p-value results of our Cochrane Q-test, MR Egger's intercept test, and MR-PRESSO, which were all > 0.05.

Conclusions: Our study has explored the potential causal connection between immune cells and KSD by Mendelian randomization analysis, thus providing some insights for future clinical studies.

目的:以往的研究已报道了免疫细胞对肾结石病(KSD)的潜在影响,但尚未确定明确的因果关系。本文旨在通过孟德尔随机分析法(MR)阐明免疫细胞与肾结石病之间的潜在因果关系:在我们的研究中,我们进行了全面的双样本孟德尔随机化(MR)分析,以确定免疫细胞性状与肾结石病之间的潜在因果关系。我们共纳入了四种免疫性状(中位荧光强度(MFI)、相对细胞性状(RC)、绝对细胞性状(AC)和形态参数(MP)),这些都是可公开获得的数据。与 KSD 相关的 GWAS 总结数据(9713 例病例和 366,693 例对照)来自 FinnGen 财团。主要的 MR 分析方法是逆方差加权法。科克伦 Q 检验、MR Egger 和 MR-Pleiotropy RESidual Sum and Outlier(MR-PRESSO)用于评估结果的稳定性:经FDR校正后,确定HLA DR + CD8br上的CD8(OR = 0.95,95% CI = 0.93-0.98,P值 = 7.20 × 10- 4,q值 = 0.088)与KSD明显相关,我们还发现免疫细胞与KSD之间存在其他25种提示性关联,其中13种关联被认为是保护因素,12种关联被认为是危险因素。我们的MR分析不存在水平多向性或显著异质性,Cochrane Q检验、MR Egger截距检验和MR-PRESSO的P值均大于0.05:我们的研究通过孟德尔随机分析探讨了免疫细胞与 KSD 之间的潜在因果关系,从而为今后的临床研究提供了一些启示。
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引用次数: 0
miR-486-5p predicted adverse outcomes of SCAP and regulated K. pneumonia infection via FOXO1. miR-486-5p 预测了 SCAP 的不良后果,并通过 FOXO1 调节肺炎 K. 感染。
IF 3 4区 医学 Q3 Immunology and Microbiology Pub Date : 2024-06-04 DOI: 10.1186/s12865-024-00624-0
Qianqi Jin, Chuanlan Liu, Yan Cao, Feiyan Wang

Purpose: Severe community-acquired pneumonia (SCAP) is a common respiratory system disease with rapid development and high mortality. Exploring effective biomarkers for early detection and development prediction of SCAP is of urgent need. The function of miR-486-5p in SCAP diagnosis and prognosis was evaluated to identify a promising biomarker for SCAP.

Patients and methods: The serum miR-486-5p in 83 patients with SCAP, 52 healthy individuals, and 68 patients with mild CAP (MCAP) patients were analyzed by PCR. ROC analysis estimated miR-486-5p in screening SCAP, and the Kaplan-Meier and Cox regression analyses evaluated the predictive value of miR-486-5p. The risk factors for MCAP patients developing SCAP were assessed by logistic analysis. The alveolar epithelial cell was treated with Klebsiella pneumonia to mimic the occurrence of SCAP. The targeting mechanism underlying miR-486-5p was evaluated by luciferase reporter assay.

Results: Upregulated serum miR-486-5p screened SCAP from healthy individuals and MCAP patients with high sensitivity and specificity. Increasing serum miR-486-5p predicted the poor outcomes of SCAP and served as a risk factor for MCAP developing into SCAP. K. pneumonia induced suppressed proliferation, significant inflammation and oxidative stress in alveolar epithelial cells, and silencing miR-486-5p attenuated it. miR-486-5p negatively regulated FOXO1, and the knockdown of FOXO1 reversed the effect of miR-486-5p in K. pneumonia-treated alveolar epithelial cells.

Conclusion: miR-486-5p acted as a biomarker for the screening and monitoring of SCAP and predicting the malignancy of MCAP. Silencing miR-486-5p alleviated inflammation and oxidative stress induced by K. pneumonia via negatively modulating FOXO1.

目的:重症社区获得性肺炎(SCAP)是一种常见的呼吸系统疾病,发病快、死亡率高。探索有效的生物标志物用于 SCAP 的早期检测和发展预测是当务之急。本研究评估了miR-486-5p在SCAP诊断和预后中的功能,以确定一种有前景的SCAP生物标志物:通过 PCR 分析了 83 名 SCAP 患者、52 名健康人和 68 名轻度 CAP(MCAP)患者的血清 miR-486-5p。ROC分析估计了miR-486-5p在筛查SCAP中的作用,Kaplan-Meier和Cox回归分析评估了miR-486-5p的预测价值。通过逻辑分析评估了 MCAP 患者罹患 SCAP 的风险因素。用肺炎克雷伯氏菌处理肺泡上皮细胞以模拟 SCAP 的发生。通过荧光素酶报告实验评估了miR-486-5p的靶向机制:结果:血清 miR-486-5p 上调能从健康人和 MCAP 患者中高灵敏度和特异性地筛查出 SCAP。血清 miR-486-5p 增高可预测 SCAP 的不良预后,并可作为 MCAP 发展为 SCAP 的风险因素。结论:miR-486-5p 是筛查和监测 SCAP 以及预测 MCAP 恶性的生物标志物。沉默miR-486-5p可通过负向调节FOXO1缓解肺炎K诱导的炎症和氧化应激。
{"title":"miR-486-5p predicted adverse outcomes of SCAP and regulated K. pneumonia infection via FOXO1.","authors":"Qianqi Jin, Chuanlan Liu, Yan Cao, Feiyan Wang","doi":"10.1186/s12865-024-00624-0","DOIUrl":"10.1186/s12865-024-00624-0","url":null,"abstract":"<p><strong>Purpose: </strong>Severe community-acquired pneumonia (SCAP) is a common respiratory system disease with rapid development and high mortality. Exploring effective biomarkers for early detection and development prediction of SCAP is of urgent need. The function of miR-486-5p in SCAP diagnosis and prognosis was evaluated to identify a promising biomarker for SCAP.</p><p><strong>Patients and methods: </strong>The serum miR-486-5p in 83 patients with SCAP, 52 healthy individuals, and 68 patients with mild CAP (MCAP) patients were analyzed by PCR. ROC analysis estimated miR-486-5p in screening SCAP, and the Kaplan-Meier and Cox regression analyses evaluated the predictive value of miR-486-5p. The risk factors for MCAP patients developing SCAP were assessed by logistic analysis. The alveolar epithelial cell was treated with Klebsiella pneumonia to mimic the occurrence of SCAP. The targeting mechanism underlying miR-486-5p was evaluated by luciferase reporter assay.</p><p><strong>Results: </strong>Upregulated serum miR-486-5p screened SCAP from healthy individuals and MCAP patients with high sensitivity and specificity. Increasing serum miR-486-5p predicted the poor outcomes of SCAP and served as a risk factor for MCAP developing into SCAP. K. pneumonia induced suppressed proliferation, significant inflammation and oxidative stress in alveolar epithelial cells, and silencing miR-486-5p attenuated it. miR-486-5p negatively regulated FOXO1, and the knockdown of FOXO1 reversed the effect of miR-486-5p in K. pneumonia-treated alveolar epithelial cells.</p><p><strong>Conclusion: </strong>miR-486-5p acted as a biomarker for the screening and monitoring of SCAP and predicting the malignancy of MCAP. Silencing miR-486-5p alleviated inflammation and oxidative stress induced by K. pneumonia via negatively modulating FOXO1.</p>","PeriodicalId":9040,"journal":{"name":"BMC Immunology","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11149205/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141246831","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of four mitochondria-related genes in sepsis based on RNA sequencing technology. 基于 RNA 测序技术鉴定败血症中的四个线粒体相关基因。
IF 3 4区 医学 Q3 Immunology and Microbiology Pub Date : 2024-05-16 DOI: 10.1186/s12865-024-00623-1
ShilinLi, Yingchun Hu

Objectives: The purpose of this study was to identify and analyze the mitochondrial genes associated with sepsis patients in order to elucidate the underlying mechanism of sepsis immunity and provide new ideas for the clinical treatment of sepsis.

Methods: The hospitalized cases of sepsis (n = 20) and systemic inflammatory response syndrome (SIRS) (n = 12) admitted to the Emergency Intensive Care Unit (EICU) of the Affiliated Hospital of Southwest Medical University from January 2019 to December 2019 were collected consecutively. RNA-seq was used to sequence the RNA (mRNA) of peripheral blood cells. Bioinformatics techniques were used to screen and identify differentially expressed RNAs, with an absolute value of fold change (FC) greater than or equal to 1.2 and a false discovery rate (FDR) less than 0.05. At the same time, mitochondrial genes were obtained from the MitoCarta 3.0 database. Differential genes were then intersected with mitochondrial genes. The resulting crossover genes were subjected to GO, KEGG, and PPI analysis. Subsequently, the GSE65682 dataset was downloaded from the GEO database for survival analysis to assess the prognostic value of core genes, and GSE67652 was downloaded for ROC curve analysis to validate the diagnostic value of core genes. Finally, the localization of core genes was clarified through 10X single-cell sequencing.

Results: The crossing of 314 sepsis differential genes and 1136 mitochondrial genes yielded 28 genes. GO and KEGG analysis showed that the crossover genes were mainly involved in the mitochondrion, mitochondrial matrix, and mitochondrial inner membrane. Survival analysis screened four genes that were significantly negatively associated with the prognosis of sepsis, namely FIS1, FKBP8, GLRX5, and GUK1. A comparison of peripheral blood RNA-seq results between the sepsis group and the SIRS group showed that the expression levels of these four genes were significantly decreased in the sepsis group compared to the SIRS group. ROC curve analysis based on GSE67652 indicates these four genes' high sensitivity and specificity for sepsis detection. Additionally, single-cell RNA sequencing found that the core genes were mainly expressed in macrophages, T cells, and B cells.

Conclusions: Mitochondria-related genes (FIS1, FKBP8, GLRX5, GUK1) were underexpressed in the sepsis group, negatively correlated with survival, and mainly distributed in immune cells. This finding may guide studying the immune-related mechanisms of sepsis. This study protocol was reviewed by the Ethics Committee of the Affiliated Hospital of Southwest Medical University (ethics number: KY2018029), the clinical trial registration number is ChiCTR1900021261, and the registration date is February 4, 2019.

研究目的本研究旨在鉴定和分析与脓毒症患者相关的线粒体基因,以阐明脓毒症免疫的内在机制,为脓毒症的临床治疗提供新思路:连续收集2019年1月至2019年12月西南医科大学附属医院急诊重症监护室(EICU)收治的脓毒症(n=20)和全身炎症反应综合征(SIRS)住院病例(n=12)。采用RNA-seq技术对外周血细胞的RNA(mRNA)进行测序。利用生物信息学技术筛选并鉴定出差异表达的RNA,其折叠变化(FC)绝对值大于或等于1.2,误发现率(FDR)小于0.05。同时,从 MitoCarta 3.0 数据库中获取线粒体基因。然后将差异基因与线粒体基因交叉。对交叉后的基因进行 GO、KEGG 和 PPI 分析。随后,从 GEO 数据库下载 GSE65682 数据集进行生存分析,以评估核心基因的预后价值;下载 GSE67652 数据集进行 ROC 曲线分析,以验证核心基因的诊断价值。最后,通过10倍单细胞测序明确了核心基因的定位:结果:将 314 个败血症差异基因和 1136 个线粒体基因进行交叉分析,得出 28 个基因。GO和KEGG分析显示,交叉基因主要涉及线粒体、线粒体基质和线粒体内膜。生存分析筛选出了与败血症预后呈显著负相关的四个基因,即FIS1、FKBP8、GLRX5和GUK1。脓毒症组与 SIRS 组外周血 RNA-seq 结果对比显示,脓毒症组与 SIRS 组相比,这四个基因的表达水平明显下降。基于 GSE67652 的 ROC 曲线分析表明,这四个基因对脓毒症的检测具有很高的灵敏度和特异性。此外,单细胞 RNA 测序发现,核心基因主要在巨噬细胞、T 细胞和 B 细胞中表达:结论:线粒体相关基因(FIS1、FKBP8、GLRX5、GUK1)在败血症组中表达不足,与存活率呈负相关,且主要分布在免疫细胞中。这一发现可为研究败血症的免疫相关机制提供指导。本研究方案经西南医科大学附属医院伦理委员会审查(伦理编号:KY2018029),临床试验注册号为ChiCTR1900021261,注册日期为2019年2月4日。
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引用次数: 0
Potential role of IGF-1R in the interaction between orbital fibroblasts and B lymphocytes: an implication for B lymphocyte depletion in the active inflammatory phase of thyroid-associated ophthalmopathy. IGF-1R在眼眶成纤维细胞和B淋巴细胞相互作用中的潜在作用:甲状腺相关性眼病活动性炎症阶段B淋巴细胞耗竭的含义。
IF 2.9 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-05-11 DOI: 10.1186/s12865-024-00613-3
Renyan Wang, Delu Song, Yong Zhong, Hui Li

Background: Thyroid eye disease (TED) is an inflammatory process involving lymphocyte-mediated immune response and orbital tissue damage. The anti-insulin-like growth factor-1 receptor (IGF-1R) antibodies produced by B lymphocytes are involved in the activation of orbital fibroblasts and the inflammatory process of orbital tissue damage in TED. The purpose of this study was to explore the role of IGF-1R in the mechanistic connection between orbital fibroblasts and B lymphocytes in TED.

Methods: Orbital fibroblasts sampled from orbital connective tissues and peripheral B lymphocytes isolated from peripheral blood, which were obtained from 15 patients with TED and 15 control patients, were co-cultured at a ratio of 1:20. The level of IGF-1R expression in orbital fibroblasts was evaluated by flow cytometry and confocal microscopy. Transient B lymphocyte depletion was induced with anti-CD20 monoclonal antibody rituximab, while the IGF-1R pathway was blocked by the IGF-1R binding protein. The expression levels of interleukin-6 (IL-6) and regulated upon activation, normal T cell expressed and secreted (RANTES) in the co-culture model were quantified via ELISA.

Results: IGF-1R expression was significantly elevated in TED orbital fibroblasts compared to that of controls. A 24-h co-culture of orbital fibroblasts with peripheral B lymphocytes induced elevated expression levels of IL-6 and RANTES in each group (TED patients and controls), with the highest levels occurring in TED patients (T + T group). Rituximab and IGF-1R binding protein significantly inhibited increased levels of IL-6 and RANTES in the co-culture model of TED patients.

Conclusions: IGF-1R may mediate interaction between orbital fibroblasts and peripheral B lymphocytes; thus, blocking IGF-1R may reduce the local inflammatory response in TED. Rituximab-mediated B lymphocyte depletion played a role in inhibiting inflammatory responses in this in vitro co-culture model, providing a theoretical basis for the clinical application of anti-CD20 monoclonal antibodies in TED.

背景:甲状腺眼病(TED)是一种涉及淋巴细胞介导的免疫反应和眼眶组织损伤的炎症过程。B 淋巴细胞产生的抗胰岛素样生长因子-1 受体(IGF-1R)抗体参与了眼眶成纤维细胞的活化和 TED 眼眶组织损伤的炎症过程。本研究的目的是探讨IGF-1R在TED眼眶成纤维细胞与B淋巴细胞之间的机理联系中的作用:从15名TED患者和15名对照组患者的眼眶结缔组织中提取的眼眶成纤维细胞和从外周血中分离的外周B淋巴细胞按1:20的比例共同培养。流式细胞术和共聚焦显微镜评估了眼眶成纤维细胞中 IGF-1R 的表达水平。用抗CD20单克隆抗体利妥昔单抗诱导瞬时B淋巴细胞耗竭,同时用IGF-1R结合蛋白阻断IGF-1R通路。通过酶联免疫吸附测定了共培养模型中白细胞介素-6(IL-6)和正常T细胞表达和分泌的白细胞介素-6(RANTES)的表达水平:结果:与对照组相比,TED眼眶成纤维细胞的IGF-1R表达明显升高。眼眶成纤维细胞与外周B淋巴细胞共培养24小时后,各组(TED患者和对照组)的IL-6和RANTES表达水平均升高,其中TED患者(T + T组)的表达水平最高。利妥昔单抗和IGF-1R结合蛋白能显著抑制TED患者共培养模型中IL-6和RANTES水平的升高:结论:IGF-1R可能介导眼眶成纤维细胞与外周B淋巴细胞之间的相互作用;因此,阻断IGF-1R可减轻TED的局部炎症反应。利妥昔单抗介导的B淋巴细胞耗竭在该体外共培养模型中起到了抑制炎症反应的作用,为抗CD20单克隆抗体在TED中的临床应用提供了理论依据。
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引用次数: 0
Atypical skin conditions of the neck and back as a dermal manifestation of anti-HMGCR antibody-positive myopathy. 颈部和背部的非典型皮肤病是抗-HMGCR抗体阳性肌病的皮肤表现。
IF 2.9 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-05-11 DOI: 10.1186/s12865-024-00622-2
Takashi Kurashige, Rie Nakamura, Tomomi Murao, Naoko Mine, Mayu Sato, Riho Katsumata, Yuhei Kanaya, Yoriko Dodo, Tomohito Sugiura, Tomohiko Ohshita

Background: Immune-mediated necrotizing myopathy (IMNM) is an idiopathic inflammatory myopathy (IIM). Though patients with IMNM were not considered to show skin rash, several reports have showed atypical skin conditions in patients with anti-3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMGCR) antibody-positive IMNM (HMGCR-IMNM). The incidence and phenotype of skin conditions in patients with HMGCR-IMNM are not fully known.

Results: Among the 100 IIM patients diagnosed from April 2015 through August 2022, 34 (34%) presented some form of skin condition, with 27 having typical skin rashes; this included 13 patients with dermatomyositis (DM), 8 with anti-synthetase syndrome (ASS), and 6 with IMNM. Meanwhile, 8 of 19 patients with HMGCR-IMNM (42%) presented atypical skin lesions, but no patients with other IIMs did (p < 0.001). Skin eruption with ash-like scales was observed in four HMGCR-IMNM patients, and non-scaly red patches and lumps in the other four patients; accordingly, their skin manifestations were considered as other dermal diseases except for IIM. However, skin and muscle biopsies revealed the atypical skin conditions of patients with HMGCR-IMNM to have the same pathological background, formed by Bcl-2-positive lymphocyte infiltrations.

Conclusions: HMGCR-IMNM patients frequently have atypical skin conditions of the neck and back. Skin biopsy specimens from these lesions showed the same Bcl-2-positive lymphocytic infiltrations as muscle biopsy specimens regardless of the different gross dermal findings. Thus, such atypical skin conditions may be suggestive for HMGCR-IMNM.

背景:免疫介导的坏死性肌病(IMNM)是一种特发性炎症性肌病(IIM)。尽管免疫介导的坏死性肌病(IMNM)患者被认为不会出现皮疹,但一些报告显示,抗-3-羟基-3-甲基戊二酰辅酶 A 还原酶(HMGCR)抗体阳性的免疫介导的坏死性肌病(HMGCR-IMNM)患者会出现非典型皮肤症状。HMGCR-IMNM患者皮肤病的发病率和表型尚不完全清楚:在2015年4月至2022年8月期间确诊的100例IIM患者中,有34例(34%)出现了某种形式的皮肤状况,其中27例有典型的皮疹;这包括13例皮肌炎(DM)患者、8例抗合成酶综合征(ASS)患者和6例IMNM患者。与此同时,19 名 HMGCR-IMNM 患者中有 8 人(42%)出现了非典型皮损,而其他 IIM 患者中没有人出现非典型皮损(P 结论):HMGCR-IMNM患者的颈部和背部经常出现非典型皮肤病。这些病变的皮肤活检标本显示出与肌肉活检标本相同的 Bcl-2 阳性淋巴细胞浸润,而不考虑不同的皮肤大体结果。因此,这种非典型皮肤病可能提示存在 HMGCR-IMNM。
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引用次数: 0
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