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From bioinformatics to clinical applications: a novel prognostic model of cuproptosis-related genes based on single-cell RNA sequencing data in hepatocellular carcinoma 从生物信息学到临床应用:基于肝细胞癌单细胞 RNA 测序数据的杯突症相关基因的新型预后模型
IF 3 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-09-09 DOI: 10.1186/s12865-024-00649-5
Yong Wang, Fenglin Zang, Bing Shao, Yanan Gao, Haicui Yang, Yuhong Guo, Tingting Ding, Baocun Sun
To ascertain the connection between cuproptosis-related genes (CRGs) and the prognosis of hepatocellular carcinoma (HCC) via single-cell RNA sequencing (scRNA-seq) and RNA sequencing (RNA-seq) data, relevant data were downloaded from the GEO and TCGA databases. The differentially expressed CRGs (DE-CRGs) were filtered by the overlaps in differentially expressed genes (DEGs) between HCC patients and normal controls (NCs) in the scRNA-seq database, DE-CRGs between high- and low-CRG-activity cells, and DEGs between HCC patients and NCs in the TCGA database. Thirty-three DE-CRGs in HCC were identified. A prognostic model (PM) was created employing six survival-related genes (SRGs) (NDRG2, CYB5A, SOX4, MYC, TM4SF1, and IFI27) via univariate Cox regression analysis and LASSO. The predictive ability of the model was validated via a nomogram and receiver operating characteristic curves. Research has employed tumor immune dysfunction and exclusion as a means to examine the influence of PM on immunological heterogeneity. Macrophage M0 levels were significantly different between the high-risk group (HRG) and the low-risk group (LRG), and a greater macrophage level was linked to a more unfavorable prognosis. The drug sensitivity data indicated a substantial difference in the half-maximal drug-suppressive concentrations of idarubicin and rapamycin between the HRG and the LRG. The model was verified by employing public datasets and our cohort at both the protein and mRNA levels. A PM using 6 SRGs (NDRG2, CYB5A, SOX4, MYC, TM4SF1, and IFI27) was developed via bioinformatics research. This model might provide a fresh perspective for assessing and managing HCC.
为了通过单细胞RNA测序(scRNA-seq)和RNA测序(RNA-seq)数据确定杯突相关基因(CRGs)与肝细胞癌(HCC)预后之间的联系,研究人员从GEO和TCGA数据库下载了相关数据。根据scRNA-seq数据库中HCC患者与正常对照组(NCs)之间差异表达基因(DEGs)的重叠、高CRG活性细胞与低CRG活性细胞之间的DE-CRGs以及TCGA数据库中HCC患者与NCs之间的DEGs,筛选出差异表达的CRGs(DE-CRGs)。结果发现了 HCC 中的 33 个 DE-CRG。通过单变量 Cox 回归分析和 LASSO,利用六个生存相关基因(SRGs)(NDRG2、CYB5A、SOX4、MYC、TM4SF1 和 IFI27)创建了一个预后模型(PM)。该模型的预测能力通过提名图和接收者操作特征曲线得到了验证。有研究利用肿瘤免疫功能障碍和排斥作为研究 PM 对免疫异质性影响的一种手段。巨噬细胞M0水平在高危组(HRG)和低危组(LRG)之间存在显著差异,巨噬细胞水平越高,预后越差。药物敏感性数据显示,伊达比星和雷帕霉素的半最大药物抑制浓度在高危组和低危组之间存在很大差异。该模型通过使用公共数据集和我们的队列在蛋白质和 mRNA 水平上进行了验证。通过生物信息学研究,利用 6 个 SRG(NDRG2、CYB5A、SOX4、MYC、TM4SF1 和 IFI27)建立了一个 PM。该模型可为评估和管理 HCC 提供新的视角。
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引用次数: 0
Revised version with tracked changes oral Magnesium reduces levels of pathogenic autoantibodies and skin disease in murine lupus. 修订版口服镁可降低小鼠狼疮的致病性自身抗体水平和皮肤病。
IF 2.9 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-09-06 DOI: 10.1186/s12865-024-00650-y
Alberto Verlato, Teresina Laragione, Sofia Bin, Randie H Kim, Fadi Salem, Percio S Gulko, Paolo Cravedi

Background: Systemic Lupus Erythematosus (SLE) has a strong genetic susceptibility, but little is known about the impact of diet on disease severity. The Western diet is typically deficient in magnesium (Mg), and given the immunomodulatory effects of Mg, we hypothesized that the low Mg intake increases disease risk and that increasing Mg intake would reduce severity of murine lupus. Here, we placed 12-week old MRL/lpr female lupus mice on a normal (Mg500) or a high (Mg2800) Mg diet for 9 weeks. Urine and blood were collected during the study for quantification of urinary albumin, BUN, anti-dsDNA antibodies, and immune phenotyping.

Results: MRL/lpr lupus mice on high Mg2800 diet had significantly fewer skin lesions and less severe skin histology score, and reduced levels of pathogenic anti-dsDNA antibodies, compared with the Mg500 group (143.8±75.0 vs. 47.4±36.2 × 106U/ml; P < 0.05). The high Mg2800 group had a nearly two-fold increase in the percentage of CD4+FOXP3+ Treg cells compared to controls (19.9±5.4 vs. 11.4±5.5%; P < 0.05). Treg percentages inversely correlated with the concentration of anti-dsDNA. None of the mice developed arthritis during the observation period and there were no significant differences in weight, proteinuria, BUN or kidney histology.

Conclusion: In conclusion, oral supplementation of Mg has a protective effect in a murine lupus model and may represent an inexpensive and safe adjuvant in the treatment of SLsE.

背景:系统性红斑狼疮(SLE)有很强的遗传易感性,但人们对饮食对疾病严重程度的影响知之甚少。西方饮食中通常缺乏镁(Mg),鉴于镁具有免疫调节作用,我们假设镁摄入量低会增加患病风险,而增加镁摄入量会降低小鼠狼疮的严重程度。在这里,我们将 12 周大的 MRL/lpr 雌性狼疮小鼠置于正常(Mg500)或高(Mg2800)镁饮食中 9 周。研究期间收集尿液和血液,以定量检测尿白蛋白、BUN、抗dsDNA抗体和免疫表型:结果:与 Mg500 组(143.8±75.0 vs. 47.4±36.2 × 106U/ml;P +FOXP3+ Treg 细胞与对照组相比(19.9±5.4 vs. 11.4±5.5%;P)相比,MRL/lpr 狼疮小鼠摄入高 Mg2800 食物后,皮肤病变显著减少,皮肤组织学评分较轻,致病性抗dsDNA 抗体水平降低:总之,口服补充镁对小鼠狼疮模型有保护作用,可能是治疗 SLsE 的一种廉价、安全的辅助疗法。
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引用次数: 0
Sepsis induced dysfunction of liver type 1 innate lymphoid cells. 败血症导致肝脏 1 型先天性淋巴细胞功能失调。
IF 2.9 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-08-30 DOI: 10.1186/s12865-024-00648-6
Peiying Wang, Yiran Zheng, Jiaman Sun, Yumo Zhang, Wing Keung Chan, Yan Lu, Xiaohong Li, Zhouxin Yang, Youwei Wang

Background: Sepsis is a life-threatening condition triggered by uncontrolled immune responses to infection, leading to widespread inflammation, tissue damage, organ dysfunction, and potentially death. The liver plays a crucial role in the immune response during sepsis, serving as a major site for immune cell activation and cytokine production. Liver type 1 innate lymphoid cells (ILCs) consist of NK cells and ILC1s. They maintain the local immune microenvironment by directly eliminating target cells and secreting cytokines. However, the specific roles and pathological changes of liver-resident NK cells and ILC1s during sepsis remain poorly understood.

Results: This study aims to investigate the pathological changes of NK cells and ILC1s, which might contribute the dysfunction of liver. Sepsis mouse model was established by cecal ligation and puncture (CLP). Mouse immune cells from liver were isolated, and the surface makers, gene expression profiles, cytokine response and secretion, and mitochondrial function of NK (Natural Killer) cells and ILC1s (Innate Lymphoid Cell 1) were analyzed. A significant decrease in the number of mature NK cells was observed in the liver after CLP. Furthermore, the secretion of interferon-gamma (IFN-γ) was found to be reduced in spleen and liver NK cells when stimulated by IL-18. Mitochondrial activities in both liver NK cells and ILC1 were found to be increased during sepsis, suggesting an enhanced metabolic response in these cells to combat the infection. However, despite this heightened activity, liver NK cells exhibited a decreased level of cytotoxicity, which might impact their ability to target infected cells effectively. RNA sequencing supported and provided the potential mechanisms for the proinflammatory effects and exhaustion like phenotypes of liver NK cells.

Conclusions: Sepsis induces dysfunction and exhaustion-like phenotypes in liver NK cells and ILC1, which might further impair other immune cells and represent a potential therapeutic target for sepsis.

背景:败血症是一种危及生命的疾病,由感染后失控的免疫反应引发,导致广泛的炎症、组织损伤、器官功能障碍,甚至可能导致死亡。肝脏在败血症期间的免疫反应中起着至关重要的作用,是免疫细胞活化和细胞因子产生的主要场所。肝脏 1 型先天性淋巴细胞(ILCs)由 NK 细胞和 ILC1s 组成。它们通过直接消灭靶细胞和分泌细胞因子来维持局部免疫微环境。然而,人们对肝脏驻留的 NK 细胞和 ILC1s 在败血症期间的具体作用和病理变化仍知之甚少:本研究旨在探讨可能导致肝脏功能障碍的 NK 细胞和 ILC1s 的病理变化。通过盲肠结扎建立败血症小鼠模型。从肝脏中分离出小鼠免疫细胞,分析了NK(自然杀伤细胞)和ILC1s(先天淋巴细胞1)的表面形态、基因表达谱、细胞因子反应和分泌以及线粒体功能。观察发现,CLP 后肝脏中成熟 NK 细胞的数量明显减少。此外,在 IL-18 的刺激下,发现脾脏和肝脏 NK 细胞分泌的干扰素-γ(IFN-γ)减少。在败血症期间,肝脏 NK 细胞和 ILC1 的线粒体活性都有所增加,这表明这些细胞的新陈代谢反应增强,以对抗感染。然而,尽管肝脏NK细胞的活性增强了,但它们的细胞毒性却降低了,这可能会影响它们有效靶向受感染细胞的能力。RNA测序支持并提供了肝脏NK细胞促炎效应和衰竭表型的潜在机制:脓毒症会诱导肝脏NK细胞和ILC1出现功能障碍和衰竭样表型,这可能会进一步损害其他免疫细胞,并成为脓毒症的潜在治疗靶点。
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引用次数: 0
Antagonist anti-LIF antibody derived from naive human scFv phage library inhibited tumor growth in mice. 从天真人类 scFv 噬菌体库中提取的拮抗剂抗 LIF 抗体抑制了小鼠的肿瘤生长。
IF 2.9 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-08-22 DOI: 10.1186/s12865-024-00636-w
Shengyan Zhao, Han Deng, Ying Lu, Yiran Tao, David Li, Xiaohua Jiang, Xian Wei, Xiaofeng Chen, Fanxin Ma, Yuxi Wang, Lantu Gou, Jinliang Yang

Background: Leukemia inhibitory factor (LIF) is a multifunctional member of the IL-6 cytokine family that activates downstream signaling pathways by binding to the heterodimer consisting of LIFR and gp130 on the cell surface. Previous research has shown that LIF is highly expressed in various tumor tissues (e.g. pancreatic cancer, breast cancer, prostate cancer, and colorectal cancer) and promotes cancer cell proliferation, migration, invasion, and differentiation. Moreover, the overexpression of LIF correlates with poor clinicopathological characteristics. Therefore, we hypothesized that LIF could be a promising target for the treatment of cancer. In this work, we developed the antagonist antibody 1G11 against LIF and investigated its anti-tumor mechanism and its therapeutic efficacy in mouse models.

Results: A series of single-chain variable fragments (scFvs) targeting LIF were screened from a naive human scFv phage library. These scFvs were reconstructed in complete IgG form and produced by the mammalian transient expression system. Among the antibodies, 1G11 exhibited the excellent binding activity to human, cynomolgus monkey and mouse LIF. Functional analysis demonstrated 1G11 could block LIF binding to LIFR and inhibit the intracellular STAT3 phosphorylation signal. Interestingly, 1G11 did not block LIF binding to gp130, another LIF receptor that is involved in forming the receptor complex together with LIFR. In vivo, intraperitoneal administration of 1G11 inhibited tumor growth in CT26 and MC38 models of colorectal cancer. IHC analysis demonstrated that p-STAT3 and Ki67 were decreased in tumor tissue, while c-caspase 3 was increased. Furthermore, 1G11 treatment improves CD3+, CD4 + and CD8 + T cell infiltration in tumor tissue.

Conclusions: We developed antagonist antibodies targeting LIF/LIFR signaling pathway from a naive human scFv phage library. Antagonist anti-LIF antibody exerts antitumor effects by specifically reducing p-STAT3. Further studies revealed that anti-LIF antibody 1G11 increased immune cell infiltration in tumor tissues.

背景:白血病抑制因子(LIF)是 IL-6 细胞因子家族的多功能成员,它通过与细胞表面由 LIFR 和 gp130 组成的异二聚体结合激活下游信号通路。以往的研究表明,LIF 在多种肿瘤组织(如胰腺癌、乳腺癌、前列腺癌和结直肠癌)中高表达,并促进癌细胞增殖、迁移、侵袭和分化。此外,LIF 的过表达与不良的临床病理特征相关。因此,我们推测 LIF 可能是治疗癌症的一个有前途的靶点。在这项工作中,我们开发了针对 LIF 的拮抗剂抗体 1G11,并在小鼠模型中研究了其抗肿瘤机制和疗效:结果:从天真的人类 scFv 噬菌体文库中筛选出了一系列靶向 LIF 的单链可变片段(scFvs)。这些 scFvs 被重构为完整的 IgG 形式,并由哺乳动物瞬时表达系统生产。在这些抗体中,1G11 与人类、猴和小鼠 LIF 的结合活性极佳。功能分析表明,1G11 能阻断 LIF 与 LIFR 的结合,抑制细胞内 STAT3 磷酸化信号。有趣的是,1G11 并不阻断 LIF 与 gp130 的结合,gp130 是另一种 LIF 受体,与 LIFR 一起参与形成受体复合物。在体内,腹腔注射 1G11 可抑制 CT26 和 MC38 结直肠癌模型的肿瘤生长。IHC分析表明,肿瘤组织中的p-STAT3和Ki67降低,而c-caspase 3升高。此外,1G11治疗可改善肿瘤组织中CD3+、CD4+和CD8+T细胞的浸润:我们从天真人类scFv噬菌体文库中开发出了靶向LIF/LIFR信号通路的拮抗剂抗体。拮抗剂抗 LIF 抗体通过特异性降低 p-STAT3 发挥抗肿瘤作用。进一步研究发现,抗LIF抗体1G11增加了肿瘤组织中免疫细胞的浸润。
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引用次数: 0
Pre-treatment plasma retinol binding protein 4 level and its change after treatments predict systemic treatment response in psoriasis patients. 治疗前血浆视黄醇结合蛋白 4 水平及其在治疗后的变化可预测银屑病患者的全身治疗反应。
IF 2.9 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-08-21 DOI: 10.1186/s12865-024-00647-7
Runting Niu, Zhijia Li, Wanqing Jiang, Qingyan Yang, Xinfei Duan, Lixiao Sun, Zhijie Cheng, Junhui Huang, Lihong Li, Junge Ma, Taiping Hu, Lijuan Zhou, Juan Du, Chang Wang, Feifei Liu

Background: Retinol binding protein 4 (RBP4) is a mediator of inflammation and related to skin lesion formation, which suggests its engagement in psoriasis pathology and progression. This study intended to explore the change in RBP4 after systemic treatments, and its ability to predict treatment response in psoriasis patients.

Methods: This prospective study enrolled 85 psoriasis patients and 20 healthy subjects. Plasma RBP4 was detected by enzyme-linked immunosorbent assay at baseline and 12th week (W12) after systemic treatments in psoriasis patients, as well as after enrollment in healthy subjects. Psoriasis Area and Severity Index (PASI) 75 and PASI 90 were evaluated at W12 in psoriasis patients.

Results: RBP4 at baseline was higher in psoriasis patients than in healthy subjects [median (interquartile range): 13.39 (9.71-22.92) versus 9.59 (6.57-13.72) µg/mL] (P = 0.003). In psoriasis patients, 50 (58.8%) patients achieved PASI 75 at W12, and 25 (29.4%) patients achieved PASI 90 at W12. RBP4 was decreased at W12 compared to its level at baseline (P < 0.001). Lower RBP4 at baseline predicted achieving PASI 75 at W12 (P = 0.038). Greater RBP4 change (baseline-W12) precited achieving PASI 75 (P = 0.036) and PASI 90 (P = 0.045) at W12. Receiver operating characteristic curves suggested that after adjustment for all clinical features, RBP4 at baseline and RBP4 change (baseline-W12) had an acceptable ability to predict PASI 75 and PASI 90 at W12 with all area under curve values > 0.7.

Conclusion: Plasma RBP4 is decreased after systemic treatments, and its low baseline level and greater decline after treatments predict good treatment response in psoriasis patients.

背景:视黄醇结合蛋白4(RBP4)是一种炎症介质,与皮损的形成有关,这表明它参与了银屑病的病理和进展。本研究旨在探讨系统治疗后 RBP4 的变化及其预测银屑病患者治疗反应的能力:这项前瞻性研究共招募了 85 名银屑病患者和 20 名健康受试者。方法:这项前瞻性研究共纳入 85 名银屑病患者和 20 名健康受试者,在银屑病患者的基线和系统治疗后第 12 周(W12)以及健康受试者入组后,用酶联免疫吸附法检测血浆 RBP4。在第12周对银屑病患者的银屑病面积和严重程度指数(PASI)75和PASI 90进行了评估:结果:银屑病患者基线时的 RBP4 比健康受试者高[中位数(四分位间范围):13.39(9.71-22)]:13.39(9.71-22.92)微克/毫升对 9.59(6.57-13.72)微克/毫升](P = 0.003)。在银屑病患者中,有 50 名(58.8%)患者在第 12 个月时 PASI 达到 75,25 名(29.4%)患者在第 12 个月时 PASI 达到 90。与基线水平相比,第 12 个月时的 RBP4 有所下降(P 0.7):血浆 RBP4 在系统治疗后会下降,其基线水平较低,治疗后下降幅度较大,预示着银屑病患者的治疗反应良好。
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引用次数: 0
KIR2DL1 gene is a surrogate marker of protection against infection-related hospitalization among HIV-1 unexposed versus exposed uninfected infants in Cameroon 在喀麦隆,KIR2DL1 基因是保护未暴露于 HIV-1 病毒与暴露于未感染病毒的婴儿免于感染相关住院治疗的替代标志物
IF 3 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-08-01 DOI: 10.1186/s12865-024-00645-9
Luc-Aimé Kagoué Simeni, Gabriel Loni Ekali, Clauvis Kunkeng Yengo, Rodrigue Kamga Wouambo, Janett Fischer, Oumarou M’rikam A. Bessong, Joseph Fokam, Louis-Marie Yindom, Jules Clément Assob Nguedia
HIV-exposed uninfected infants (HEU) appear more vulnerable to infections compared to their HIV-unexposed uninfected (HUU) peers, generally attributed to poor passive immunity acquired from the mother. This may be due to some genetic factors that could alter the immune system. We thus sought to determine the distribution of Killer Cell Immunoglobulin-Like Receptors (KIRs) genes in HEU versus HUU and study their associations with the occurrence of infection-related hospitalization. A cohort study was conducted from May 2019 to April 2020 among HEU and HUU infants, including their follow-up at weeks 6, 12, 24, and 48, in reference pediatric centers in Yaoundé-Cameroon. The infant HIV status and infections were determined. A total of 15 KIR genes were investigated using the sequence-specific primer polymerase chain reaction (PCR-SSP) method. The KIR genes that were significantly associated with HIV-1 status (HEU and HUU) were analyzed for an association with infection-related hospitalizations. This was only possible if, and to the extent that, infection-related hospitalizations varied significantly according to status. Multivariate logistic regression analyses were conducted to determine the association between KIR gene content variants and HIV status, while considering a number of potential confounding factors. Furthermore, the risk was quantified using relative risk, odds ratio, and a 95% confidence interval. The Fisher exact test was employed to compare the frequency of occurrences. A p-value of less than 0.05 was considered statistically significant. In this cohort, a total of 66 infants participated, but only 19 acquired infections requiring hospitalizations (14.81%, 04/27 HUU and 38.46%, 15/39 HEU, p = 0.037). At week 48 (39 HEU and 27 HUU), the relative risk (RR) for infection-related hospitalizations was 2.42 (95% CI: 1.028–5.823) for HEU versus HUU with OR 3.59 (1.037–12.448). KIR2DL1 gene was significantly underrepresented in HEU versus HUU (OR = 0.183, 95%CI: 0.053–0.629; p = 0.003), and the absence of KIR2DL1 was significantly associated with infection-related hospitalization (p < 0.001; aOR = 0.063; 95%CI: 0.017–0.229). Compared to HUU, the vulnerability of HEU is driven by KIR2DL1, indicating the protective role of this KIR against infection and hospitalizations.
与未感染艾滋病毒的同龄婴儿(HUU)相比,暴露于艾滋病毒的未感染婴儿(HEU)似乎更容易受到感染,这通常归因于从母亲那里获得的被动免疫能力较差。这可能是由于某些可能改变免疫系统的遗传因素造成的。因此,我们试图确定 HEU 与 HUU 中杀伤细胞免疫球蛋白样受体(KIRs)基因的分布情况,并研究它们与感染相关住院的发生率之间的关系。从 2019 年 5 月到 2020 年 4 月,在雅温得-喀麦隆的参考儿科中心对 HEU 和 HUU 婴儿进行了一项队列研究,包括第 6、12、24 和 48 周的随访。确定了婴儿的艾滋病毒感染状况和感染情况。采用序列特异性引物聚合酶链反应(PCR-SSP)方法对总共 15 个 KIR 基因进行了研究。分析了与 HIV-1 感染状况(HEU 和 HUU)明显相关的 KIR 基因与感染相关住院治疗的关系。只有在感染相关住院治疗因感染状况而有显著差异的情况下,才能进行分析。我们进行了多变量逻辑回归分析,以确定 KIR 基因含量变异与 HIV 感染状况之间的关联,同时考虑了一些潜在的混杂因素。此外,还使用相对风险、几率比和 95% 置信区间对风险进行了量化。采用费雪精确检验来比较发生频率。P 值小于 0.05 即为具有统计学意义。在该队列中,共有 66 名婴儿参与,但只有 19 例感染需要住院治疗(14.81%,04/27 HUU;38.46%,15/39 HEU,p = 0.037)。在第 48 周(39 例 HEU 和 27 例 HUU),HEU 与 HUU 的感染相关住院相对风险 (RR) 为 2.42(95% CI:1.028-5.823),OR 为 3.59(1.037-12.448)。KIR2DL1 基因在 HEU 与 HUU 中的代表性明显不足(OR = 0.183,95%CI:0.053-0.629;p = 0.003),KIR2DL1 基因缺失与感染相关住院治疗显著相关(p < 0.001;aOR = 0.063;95%CI:0.017-0.229)。与 HUU 相比,HEU 的易感性是由 KIR2DL1 驱动的,这表明该 KIR 对感染和住院具有保护作用。
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引用次数: 0
Transcriptomics explores potential mechanisms for the development of Primary Sjogren's syndrome to diffuse large B-cell lymphoma in B cells. 转录组学探索了 B 细胞从原发性 Sjogren's 综合征发展为弥漫性大 B 细胞淋巴瘤的潜在机制。
IF 2.9 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-07-30 DOI: 10.1186/s12865-024-00646-8
Yanan Xu, Jianxing Han, Ziyi Fan, Shufen Liang

Purpose: Primary Sjogren's syndrome (pSS) is a prevalent autoimmune disease. The immune dysregulation it causes often leads to the development of diffuse large B-cell lymphoma (DLBCL) in clinical practice. However, how it contributes to these two disorders at the molecular level is not yet known. This study explored the potential molecular mechanisms associated with the differences between DLBCL and pSS.

Patients and methods: Gene expression matrices from discovery cohort 1, discovery cohort 2, and the validation cohort were downloaded from the GEO and TCGA databases. Weighted gene coexpression network analysis (WGCNA) was performed to identify the coexpression modules of DLBCL and pSS in discovery cohort 1 and obtain shared genes. GO and KEGG enrichment analyses and PPI network analysis were performed on the shared genes. Immune-related genes (IRGs) were intersected with shared genes to obtain common genes. Afterward, common genes were identified via machine learning methods. The immune infiltration analysis, miRNA-TF-hub gene regulatory chart, gene interactions of the hub genes, and gene‒drug target analysis were performed. Finally, STAT1 was identified as a possible essential gene by the above analysis, and immune infiltration and GSEA pathway analyses were performed in the high- and low-expression groups in discovery cohort 2. The diagnostic efficacy of the hub genes was assessed in the validation cohort, and clinical samples were collected for validation.

Results: By WGCNA, one modular gene in each group was considered highly associated with the disease, and we obtained 28 shared genes. Enrichment analysis revealed shared genes involved in the viral response and regulation. We obtained four hub genes (ISG20, STAT1, TLR7, and RSAD2) via the algorithm. Hub genes and similar genes are primarily involved in regulating type I IFNs. The construction of a miRNA-TF-hub gene regulatory chart revealed that hsa-mir-155-5p, hsa-mir-146b-5p, hsa-mir-21-3p, and hsa-mir-126-3p play essential roles in both diseases. Hub genes were differentially expressed in B-cell memory according to immune infiltration analysis. Hub genes had a strong diagnostic effect on both diseases. STAT1 plays an essential role in immune cells in both diseases.

Conclusion: We identified hub susceptibility genes for DLBCL and pSS and identified hub genes and potential therapeutic targets that may act as biomarkers.

目的:原发性斯约格伦综合征(pSS)是一种常见的自身免疫性疾病。在临床实践中,它所导致的免疫失调往往会导致弥漫大 B 细胞淋巴瘤(DLBCL)的发生。然而,它如何在分子水平上导致这两种疾病尚未可知。本研究探讨了与 DLBCL 和 pSS 之间差异相关的潜在分子机制:从 GEO 和 TCGA 数据库下载发现队列 1、发现队列 2 和验证队列的基因表达矩阵。进行加权基因共表达网络分析(WGCNA),以确定发现队列1中DLBCL和pSS的共表达模块,并获得共享基因。对共有基因进行了 GO 和 KEGG 富集分析以及 PPI 网络分析。将免疫相关基因(IRGs)与共有基因交叉,以获得共有基因。之后,通过机器学习方法确定共同基因。进行了免疫浸润分析、miRNA-TF-枢纽基因调控图、枢纽基因的基因相互作用和基因-药物靶点分析。最后,通过上述分析将 STAT1 确定为可能的重要基因,并对发现队列 2 中的高表达组和低表达组进行了免疫浸润和 GSEA 通路分析。在验证队列中评估了中枢基因的诊断效果,并收集了临床样本进行验证:通过 WGCNA,每组中有一个模块基因被认为与疾病高度相关,我们获得了 28 个共享基因。富集分析揭示了参与病毒反应和调控的共有基因。通过该算法,我们获得了四个枢纽基因(ISG20、STAT1、TLR7 和 RSAD2)。枢纽基因和类似基因主要参与调控 IFNs。构建的 miRNA-TF 中枢基因调控图显示,hsa-mir-155-5p、hsa-mir-146b-5p、hsa-mir-21-3p 和 hsa-mir-126-3p 在这两种疾病中发挥着重要作用。根据免疫浸润分析,枢纽基因在 B 细胞记忆中的表达存在差异。枢纽基因对这两种疾病都有很强的诊断作用。STAT1在两种疾病的免疫细胞中都发挥着重要作用:我们发现了DLBCL和pSS的枢纽易感基因,并确定了可作为生物标志物的枢纽基因和潜在治疗靶点。
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引用次数: 0
Serum immunoglobulin concentrations and risk of type 2 diabetes mellitus in adults: a prospective cohort study from the TCLSIH study. 血清免疫球蛋白浓度与成人罹患 2 型糖尿病的风险:TCLSIH 研究的前瞻性队列研究。
IF 2.9 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-07-29 DOI: 10.1186/s12865-024-00637-9
Li Zhang, Yuanbin Li, Honglei Wang, Yirui Guo, Xiaotong Wang, Hongmei Wu, Qing Zhang, Li Liu, Ge Meng, Shunming Zhang, Shaomei Sun, Ming Zhou, Qiyu Jia, Kun Song, Anna Stubbendorff, Yeqing Gu, Kaijun Niu

Type 2 diabetes mellitus (T2DM) is a metabolic disorder characterized by hyperglycemia resulting from defects in insulin secretion and/or insulin action. Increasing evidence suggests that inflammation played an important role in the pathogenesis of T2DM. Prospective studies on the link between immunoglobulins concentrations and the risk of T2DM in adults are limited. We developed a cohort study including 7,093 adults without T2DM history. The incidence of T2DM was 16.45 per 1,000 person-years. Compared with the lowest quartiles, the hazard ratios (95% confidence intervals) of T2DM for the highest quartiles of IgG, IgE, IgM and IgA were 0.64 (0.48-0.85), 0.94 (0.72-1.23), 0.68 (0.50-0.92) and 1.62 (1.24-2.11) (P for trend was < 0.01, 0.84, 0.02 and < 0.0001), respectively, suggesting that serum IgG and IgM concentrations were inversely associated with the incidence of T2DM, and IgA levels were positively associated with the risk of T2DM in a general adult population.

2 型糖尿病(T2DM)是一种代谢紊乱疾病,其特征是胰岛素分泌和/或胰岛素作用缺陷导致的高血糖。越来越多的证据表明,炎症在 T2DM 的发病机制中扮演着重要角色。有关免疫球蛋白浓度与成人 T2DM 风险之间联系的前瞻性研究十分有限。我们开展了一项队列研究,纳入了 7093 名无 T2DM 病史的成年人。T2DM 的发病率为每千人年 16.45 例。与最低四分位数相比,IgG、IgE、IgM 和 IgA 的最高四分位数的 T2DM 危险比(95% 置信区间)分别为 0.64 (0.48-0.85)、0.94 (0.72-1.23)、0.68 (0.50-0.92) 和 1.62 (1.24-2.11)。
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引用次数: 0
Histone acetylation risk model predicts prognosis and guides therapy selection in glioblastoma: implications for chemotherapy and anti-CTLA-4 immunotherapy 组蛋白乙酰化风险模型可预测预后并指导胶质母细胞瘤的治疗选择:对化疗和抗CTLA-4免疫疗法的影响
IF 3 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-07-27 DOI: 10.1186/s12865-024-00639-7
Xingyi Jin, Zhigang Qin, Hang Zhao
Glioblastoma is characterized by high aggressiveness, frequent recurrence, and poor prognosis. Histone acetylation-associated genes have been implicated in its occurrence and development, yet their predictive ability in glioblastoma prognosis remains unclear. This study constructs a histone acetylation risk model using Cox and LASSO regression analyses to evaluate glioblastoma prognosis. We assessed the model’s prognostic ability with univariate and multivariate Cox regression analyses. Additionally, immune infiltration was evaluated using ESTIMATE and TIMER algorithms, and the SubMAP algorithm was utilized to predict responses to CTLA4 inhibitor. Multiple drug databases were applied to assess drug sensitivity in high- and low-risk groups. Our results indicate that the histone acetylation risk model is independent and reliable in predicting prognosis. Low-risk patients showed higher immune activity and longer overall survival, suggesting anti-CTLA4 immunotherapy suitability, while high-risk patients might benefit more from chemotherapy. This model could guide personalized therapy selection for glioblastoma patients.
胶质母细胞瘤的特点是侵袭性强、复发率高、预后差。组蛋白乙酰化相关基因与胶质母细胞瘤的发生和发展有关,但它们对胶质母细胞瘤预后的预测能力仍不明确。本研究利用 Cox 和 LASSO 回归分析构建了组蛋白乙酰化风险模型,以评估胶质母细胞瘤的预后。我们通过单变量和多变量 Cox 回归分析评估了该模型的预后能力。此外,我们还利用ESTIMATE和TIMER算法评估了免疫浸润,并利用SubMAP算法预测了对CTLA4抑制剂的反应。应用多种药物数据库评估了高风险组和低风险组的药物敏感性。我们的研究结果表明,组蛋白乙酰化风险模型在预测预后方面是独立而可靠的。低危患者的免疫活性更高,总生存期更长,这表明抗CTLA4免疫疗法是合适的,而高危患者则可能从化疗中获益更多。该模型可指导胶质母细胞瘤患者的个性化治疗选择。
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引用次数: 0
Multiplex array analysis of circulating cytokines and chemokines in COVID-19 patients during the first wave of the SARS-CoV-2 pandemic in Milan, Italy. 对意大利米兰第一波 SARS-CoV-2 大流行期间 COVID-19 患者体内循环细胞因子和趋化因子的多重阵列分析。
IF 2.9 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-07-26 DOI: 10.1186/s12865-024-00641-z
Estefanía Calvo-Alvarez, Sarah D'Alessandro, Nunzia Zanotta, Nicoletta Basilico, Silvia Parapini, Lucia Signorini, Federica Perego, Kevin Kamau Maina, Pasquale Ferrante, Annalisa Modenese, Pierluigi Pizzocri, Andrea Ronsivalle, Serena Delbue, Manola Comar

Background: The systemic inflammatory syndrome called "cytokine storm" has been described in COVID-19 pathogenesis, contributing to disease severity. The analysis of cytokine and chemokine levels in the blood of 21 SARS-CoV-2 positive patients throughout the phases of the pandemic has been studied to understand immune response dysregulation and identify potential disease biomarkers for new treatments. The present work reports the cytokine and chemokine levels in sera from a small cohort of individuals primarily infected with SARS-CoV-2 during the first wave of the COVID-19 pandemic in Milan (Italy).

Results: Among the 27 cytokines and chemokines investigated, a significant higher expression of Interleukin-9 (IL-9), IP-10 (CXCL10), MCP-1 (CCL2) and RANTES (CCL-5) in infected patients compared to uninfected subjects was observed. When the change in cytokine/chemokine levels was monitored over time, from the hospitalization day to discharge, only IL-6 and IP-10 showed a significant decrease. Consistent with these findings, a significant negative correlation was observed between IP-10 and anti-Spike IgG antibodies in infected individuals. In contrast, IL-17 was positively correlated with the production of IgG against SARS-CoV-2.

Conclusions: The cytokine storm and the modulation of cytokine levels by SARS-CoV-2 infection are hallmarks of COVID-19. The current global immunity profile largely stems from widespread vaccination campaigns and previous infection exposures. Consequently, the immunological features and dynamic cytokine profiles of non-vaccinated and primarily-infected subjects reported here provide novel insights into the inflammatory immune landscape in the context of SARS-CoV-2 infection, and offer valuable knowledge for addressing future viral infections and the development of novel treatments.

背景:在 COVID-19 的发病机制中描述了被称为 "细胞因子风暴 "的全身炎症综合征,这种综合征导致了疾病的严重性。对 21 名 SARS-CoV-2 阳性患者在整个大流行阶段的血液中细胞因子和趋化因子水平进行了分析研究,以了解免疫反应失调的情况,并为新的治疗方法确定潜在的疾病生物标志物。本研究报告了在意大利米兰 COVID-19 第一波大流行期间,一小批主要感染 SARS-CoV-2 的患者血清中细胞因子和趋化因子的水平:结果:在所调查的 27 种细胞因子和趋化因子中,观察到感染者的白细胞介素-9(IL-9)、IP-10(CXCL10)、MCP-1(CCL2)和 RANTES(CCL-5)的表达量明显高于未感染者。从住院日到出院,随着时间的推移监测细胞因子/趋化因子水平的变化,只有 IL-6 和 IP-10 出现了显著下降。与这些发现一致的是,在感染者体内,IP-10 与抗梭状芽孢杆菌 IgG 抗体之间存在明显的负相关。相反,IL-17 与抗 SARS-CoV-2 IgG 的产生呈正相关:结论:细胞因子风暴和 SARS-CoV-2 感染对细胞因子水平的调节是 COVID-19 的特征。目前全球的免疫状况主要源于广泛的疫苗接种运动和以往的感染暴露。因此,本文报告的未接种疫苗和初次感染者的免疫学特征和动态细胞因子谱为了解 SARS-CoV-2 感染时的炎症免疫状况提供了新的视角,并为应对未来的病毒感染和开发新的治疗方法提供了宝贵的知识。
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引用次数: 0
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