首页 > 最新文献

BMC Immunology最新文献

英文 中文
The immune factors have complex causal regulation effects on kidney stone disease: a mendelian randomization study. 免疫因素对肾结石病具有复杂的因果调节作用:一项孟德尔随机研究。
IF 3 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-06-14 DOI: 10.1186/s12865-024-00627-x
Dongfeng Yuan, Junyi Yang, Weisong Wu, Yirixiatijiang Amier, Xianmiu Li, Wenlong Wan, Yisheng Huang, Jiabo Li, Xiao Yu

Purpose: Previous studies have reported the potential impact of immune cells on kidney stone disease (KSD), but definitive causal relationships have yet to be established. The purpose of this paper is to elucidate the potential causal association between immune cells and KSD by Mendelian randomization (MR) analysis.

Methods: In our study, a thorough two-sample Mendelian randomization (MR) analysis was performed by us to determine the potential causal relationship between immune cell traits and kidney stone disease. We included a total of four immune traits (median fluorescence intensity (MFI), relative cellular (RC), absolute cellular (AC), and morphological parameters (MP)), which are publicly available data. GWAS summary data related to KSD (9713 cases and 366,693 controls) were obtained from the FinnGen consortium. The primary MR analysis method was Inverse variance weighted. Cochran's Q test, MR Egger, and MR-Pleiotropy RESidual Sum and Outlier (MR-PRESSO) were used to assess the stability of the results.

Results: After FDR correction, the CD8 on HLA DR + CD8br (OR = 0.95, 95% CI = 0.93-0.98, p-value = 7.20 × 10- 4, q-value = 0.088) was determined to be distinctly associated with KSD, and we also found other 25 suggestive associations between immune cells and KSD, of which 13 associations were suggested as protective factors and 12 associations were suggested as risk factors. There was no horizontal pleiotropy or significant heterogeneity in our MR analysis, as determined by the p-value results of our Cochrane Q-test, MR Egger's intercept test, and MR-PRESSO, which were all > 0.05.

Conclusions: Our study has explored the potential causal connection between immune cells and KSD by Mendelian randomization analysis, thus providing some insights for future clinical studies.

目的:以往的研究已报道了免疫细胞对肾结石病(KSD)的潜在影响,但尚未确定明确的因果关系。本文旨在通过孟德尔随机分析法(MR)阐明免疫细胞与肾结石病之间的潜在因果关系:在我们的研究中,我们进行了全面的双样本孟德尔随机化(MR)分析,以确定免疫细胞性状与肾结石病之间的潜在因果关系。我们共纳入了四种免疫性状(中位荧光强度(MFI)、相对细胞性状(RC)、绝对细胞性状(AC)和形态参数(MP)),这些都是可公开获得的数据。与 KSD 相关的 GWAS 总结数据(9713 例病例和 366,693 例对照)来自 FinnGen 财团。主要的 MR 分析方法是逆方差加权法。科克伦 Q 检验、MR Egger 和 MR-Pleiotropy RESidual Sum and Outlier(MR-PRESSO)用于评估结果的稳定性:经FDR校正后,确定HLA DR + CD8br上的CD8(OR = 0.95,95% CI = 0.93-0.98,P值 = 7.20 × 10- 4,q值 = 0.088)与KSD明显相关,我们还发现免疫细胞与KSD之间存在其他25种提示性关联,其中13种关联被认为是保护因素,12种关联被认为是危险因素。我们的MR分析不存在水平多向性或显著异质性,Cochrane Q检验、MR Egger截距检验和MR-PRESSO的P值均大于0.05:我们的研究通过孟德尔随机分析探讨了免疫细胞与 KSD 之间的潜在因果关系,从而为今后的临床研究提供了一些启示。
{"title":"The immune factors have complex causal regulation effects on kidney stone disease: a mendelian randomization study.","authors":"Dongfeng Yuan, Junyi Yang, Weisong Wu, Yirixiatijiang Amier, Xianmiu Li, Wenlong Wan, Yisheng Huang, Jiabo Li, Xiao Yu","doi":"10.1186/s12865-024-00627-x","DOIUrl":"10.1186/s12865-024-00627-x","url":null,"abstract":"<p><strong>Purpose: </strong>Previous studies have reported the potential impact of immune cells on kidney stone disease (KSD), but definitive causal relationships have yet to be established. The purpose of this paper is to elucidate the potential causal association between immune cells and KSD by Mendelian randomization (MR) analysis.</p><p><strong>Methods: </strong>In our study, a thorough two-sample Mendelian randomization (MR) analysis was performed by us to determine the potential causal relationship between immune cell traits and kidney stone disease. We included a total of four immune traits (median fluorescence intensity (MFI), relative cellular (RC), absolute cellular (AC), and morphological parameters (MP)), which are publicly available data. GWAS summary data related to KSD (9713 cases and 366,693 controls) were obtained from the FinnGen consortium. The primary MR analysis method was Inverse variance weighted. Cochran's Q test, MR Egger, and MR-Pleiotropy RESidual Sum and Outlier (MR-PRESSO) were used to assess the stability of the results.</p><p><strong>Results: </strong>After FDR correction, the CD8 on HLA DR + CD8br (OR = 0.95, 95% CI = 0.93-0.98, p-value = 7.20 × 10<sup>- 4</sup>, q-value = 0.088) was determined to be distinctly associated with KSD, and we also found other 25 suggestive associations between immune cells and KSD, of which 13 associations were suggested as protective factors and 12 associations were suggested as risk factors. There was no horizontal pleiotropy or significant heterogeneity in our MR analysis, as determined by the p-value results of our Cochrane Q-test, MR Egger's intercept test, and MR-PRESSO, which were all > 0.05.</p><p><strong>Conclusions: </strong>Our study has explored the potential causal connection between immune cells and KSD by Mendelian randomization analysis, thus providing some insights for future clinical studies.</p>","PeriodicalId":9040,"journal":{"name":"BMC Immunology","volume":"25 1","pages":"34"},"PeriodicalIF":3.0,"publicationDate":"2024-06-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11177369/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141320459","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
miR-486-5p predicted adverse outcomes of SCAP and regulated K. pneumonia infection via FOXO1. miR-486-5p 预测了 SCAP 的不良后果,并通过 FOXO1 调节肺炎 K. 感染。
IF 3 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-06-04 DOI: 10.1186/s12865-024-00624-0
Qianqi Jin, Chuanlan Liu, Yan Cao, Feiyan Wang

Purpose: Severe community-acquired pneumonia (SCAP) is a common respiratory system disease with rapid development and high mortality. Exploring effective biomarkers for early detection and development prediction of SCAP is of urgent need. The function of miR-486-5p in SCAP diagnosis and prognosis was evaluated to identify a promising biomarker for SCAP.

Patients and methods: The serum miR-486-5p in 83 patients with SCAP, 52 healthy individuals, and 68 patients with mild CAP (MCAP) patients were analyzed by PCR. ROC analysis estimated miR-486-5p in screening SCAP, and the Kaplan-Meier and Cox regression analyses evaluated the predictive value of miR-486-5p. The risk factors for MCAP patients developing SCAP were assessed by logistic analysis. The alveolar epithelial cell was treated with Klebsiella pneumonia to mimic the occurrence of SCAP. The targeting mechanism underlying miR-486-5p was evaluated by luciferase reporter assay.

Results: Upregulated serum miR-486-5p screened SCAP from healthy individuals and MCAP patients with high sensitivity and specificity. Increasing serum miR-486-5p predicted the poor outcomes of SCAP and served as a risk factor for MCAP developing into SCAP. K. pneumonia induced suppressed proliferation, significant inflammation and oxidative stress in alveolar epithelial cells, and silencing miR-486-5p attenuated it. miR-486-5p negatively regulated FOXO1, and the knockdown of FOXO1 reversed the effect of miR-486-5p in K. pneumonia-treated alveolar epithelial cells.

Conclusion: miR-486-5p acted as a biomarker for the screening and monitoring of SCAP and predicting the malignancy of MCAP. Silencing miR-486-5p alleviated inflammation and oxidative stress induced by K. pneumonia via negatively modulating FOXO1.

目的:重症社区获得性肺炎(SCAP)是一种常见的呼吸系统疾病,发病快、死亡率高。探索有效的生物标志物用于 SCAP 的早期检测和发展预测是当务之急。本研究评估了miR-486-5p在SCAP诊断和预后中的功能,以确定一种有前景的SCAP生物标志物:通过 PCR 分析了 83 名 SCAP 患者、52 名健康人和 68 名轻度 CAP(MCAP)患者的血清 miR-486-5p。ROC分析估计了miR-486-5p在筛查SCAP中的作用,Kaplan-Meier和Cox回归分析评估了miR-486-5p的预测价值。通过逻辑分析评估了 MCAP 患者罹患 SCAP 的风险因素。用肺炎克雷伯氏菌处理肺泡上皮细胞以模拟 SCAP 的发生。通过荧光素酶报告实验评估了miR-486-5p的靶向机制:结果:血清 miR-486-5p 上调能从健康人和 MCAP 患者中高灵敏度和特异性地筛查出 SCAP。血清 miR-486-5p 增高可预测 SCAP 的不良预后,并可作为 MCAP 发展为 SCAP 的风险因素。结论:miR-486-5p 是筛查和监测 SCAP 以及预测 MCAP 恶性的生物标志物。沉默miR-486-5p可通过负向调节FOXO1缓解肺炎K诱导的炎症和氧化应激。
{"title":"miR-486-5p predicted adverse outcomes of SCAP and regulated K. pneumonia infection via FOXO1.","authors":"Qianqi Jin, Chuanlan Liu, Yan Cao, Feiyan Wang","doi":"10.1186/s12865-024-00624-0","DOIUrl":"10.1186/s12865-024-00624-0","url":null,"abstract":"<p><strong>Purpose: </strong>Severe community-acquired pneumonia (SCAP) is a common respiratory system disease with rapid development and high mortality. Exploring effective biomarkers for early detection and development prediction of SCAP is of urgent need. The function of miR-486-5p in SCAP diagnosis and prognosis was evaluated to identify a promising biomarker for SCAP.</p><p><strong>Patients and methods: </strong>The serum miR-486-5p in 83 patients with SCAP, 52 healthy individuals, and 68 patients with mild CAP (MCAP) patients were analyzed by PCR. ROC analysis estimated miR-486-5p in screening SCAP, and the Kaplan-Meier and Cox regression analyses evaluated the predictive value of miR-486-5p. The risk factors for MCAP patients developing SCAP were assessed by logistic analysis. The alveolar epithelial cell was treated with Klebsiella pneumonia to mimic the occurrence of SCAP. The targeting mechanism underlying miR-486-5p was evaluated by luciferase reporter assay.</p><p><strong>Results: </strong>Upregulated serum miR-486-5p screened SCAP from healthy individuals and MCAP patients with high sensitivity and specificity. Increasing serum miR-486-5p predicted the poor outcomes of SCAP and served as a risk factor for MCAP developing into SCAP. K. pneumonia induced suppressed proliferation, significant inflammation and oxidative stress in alveolar epithelial cells, and silencing miR-486-5p attenuated it. miR-486-5p negatively regulated FOXO1, and the knockdown of FOXO1 reversed the effect of miR-486-5p in K. pneumonia-treated alveolar epithelial cells.</p><p><strong>Conclusion: </strong>miR-486-5p acted as a biomarker for the screening and monitoring of SCAP and predicting the malignancy of MCAP. Silencing miR-486-5p alleviated inflammation and oxidative stress induced by K. pneumonia via negatively modulating FOXO1.</p>","PeriodicalId":9040,"journal":{"name":"BMC Immunology","volume":"25 1","pages":"33"},"PeriodicalIF":3.0,"publicationDate":"2024-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11149205/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141246831","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of four mitochondria-related genes in sepsis based on RNA sequencing technology. 基于 RNA 测序技术鉴定败血症中的四个线粒体相关基因。
IF 3 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-05-16 DOI: 10.1186/s12865-024-00623-1
ShilinLi, Yingchun Hu

Objectives: The purpose of this study was to identify and analyze the mitochondrial genes associated with sepsis patients in order to elucidate the underlying mechanism of sepsis immunity and provide new ideas for the clinical treatment of sepsis.

Methods: The hospitalized cases of sepsis (n = 20) and systemic inflammatory response syndrome (SIRS) (n = 12) admitted to the Emergency Intensive Care Unit (EICU) of the Affiliated Hospital of Southwest Medical University from January 2019 to December 2019 were collected consecutively. RNA-seq was used to sequence the RNA (mRNA) of peripheral blood cells. Bioinformatics techniques were used to screen and identify differentially expressed RNAs, with an absolute value of fold change (FC) greater than or equal to 1.2 and a false discovery rate (FDR) less than 0.05. At the same time, mitochondrial genes were obtained from the MitoCarta 3.0 database. Differential genes were then intersected with mitochondrial genes. The resulting crossover genes were subjected to GO, KEGG, and PPI analysis. Subsequently, the GSE65682 dataset was downloaded from the GEO database for survival analysis to assess the prognostic value of core genes, and GSE67652 was downloaded for ROC curve analysis to validate the diagnostic value of core genes. Finally, the localization of core genes was clarified through 10X single-cell sequencing.

Results: The crossing of 314 sepsis differential genes and 1136 mitochondrial genes yielded 28 genes. GO and KEGG analysis showed that the crossover genes were mainly involved in the mitochondrion, mitochondrial matrix, and mitochondrial inner membrane. Survival analysis screened four genes that were significantly negatively associated with the prognosis of sepsis, namely FIS1, FKBP8, GLRX5, and GUK1. A comparison of peripheral blood RNA-seq results between the sepsis group and the SIRS group showed that the expression levels of these four genes were significantly decreased in the sepsis group compared to the SIRS group. ROC curve analysis based on GSE67652 indicates these four genes' high sensitivity and specificity for sepsis detection. Additionally, single-cell RNA sequencing found that the core genes were mainly expressed in macrophages, T cells, and B cells.

Conclusions: Mitochondria-related genes (FIS1, FKBP8, GLRX5, GUK1) were underexpressed in the sepsis group, negatively correlated with survival, and mainly distributed in immune cells. This finding may guide studying the immune-related mechanisms of sepsis. This study protocol was reviewed by the Ethics Committee of the Affiliated Hospital of Southwest Medical University (ethics number: KY2018029), the clinical trial registration number is ChiCTR1900021261, and the registration date is February 4, 2019.

研究目的本研究旨在鉴定和分析与脓毒症患者相关的线粒体基因,以阐明脓毒症免疫的内在机制,为脓毒症的临床治疗提供新思路:连续收集2019年1月至2019年12月西南医科大学附属医院急诊重症监护室(EICU)收治的脓毒症(n=20)和全身炎症反应综合征(SIRS)住院病例(n=12)。采用RNA-seq技术对外周血细胞的RNA(mRNA)进行测序。利用生物信息学技术筛选并鉴定出差异表达的RNA,其折叠变化(FC)绝对值大于或等于1.2,误发现率(FDR)小于0.05。同时,从 MitoCarta 3.0 数据库中获取线粒体基因。然后将差异基因与线粒体基因交叉。对交叉后的基因进行 GO、KEGG 和 PPI 分析。随后,从 GEO 数据库下载 GSE65682 数据集进行生存分析,以评估核心基因的预后价值;下载 GSE67652 数据集进行 ROC 曲线分析,以验证核心基因的诊断价值。最后,通过10倍单细胞测序明确了核心基因的定位:结果:将 314 个败血症差异基因和 1136 个线粒体基因进行交叉分析,得出 28 个基因。GO和KEGG分析显示,交叉基因主要涉及线粒体、线粒体基质和线粒体内膜。生存分析筛选出了与败血症预后呈显著负相关的四个基因,即FIS1、FKBP8、GLRX5和GUK1。脓毒症组与 SIRS 组外周血 RNA-seq 结果对比显示,脓毒症组与 SIRS 组相比,这四个基因的表达水平明显下降。基于 GSE67652 的 ROC 曲线分析表明,这四个基因对脓毒症的检测具有很高的灵敏度和特异性。此外,单细胞 RNA 测序发现,核心基因主要在巨噬细胞、T 细胞和 B 细胞中表达:结论:线粒体相关基因(FIS1、FKBP8、GLRX5、GUK1)在败血症组中表达不足,与存活率呈负相关,且主要分布在免疫细胞中。这一发现可为研究败血症的免疫相关机制提供指导。本研究方案经西南医科大学附属医院伦理委员会审查(伦理编号:KY2018029),临床试验注册号为ChiCTR1900021261,注册日期为2019年2月4日。
{"title":"Identification of four mitochondria-related genes in sepsis based on RNA sequencing technology.","authors":"ShilinLi, Yingchun Hu","doi":"10.1186/s12865-024-00623-1","DOIUrl":"10.1186/s12865-024-00623-1","url":null,"abstract":"<p><strong>Objectives: </strong>The purpose of this study was to identify and analyze the mitochondrial genes associated with sepsis patients in order to elucidate the underlying mechanism of sepsis immunity and provide new ideas for the clinical treatment of sepsis.</p><p><strong>Methods: </strong>The hospitalized cases of sepsis (n = 20) and systemic inflammatory response syndrome (SIRS) (n = 12) admitted to the Emergency Intensive Care Unit (EICU) of the Affiliated Hospital of Southwest Medical University from January 2019 to December 2019 were collected consecutively. RNA-seq was used to sequence the RNA (mRNA) of peripheral blood cells. Bioinformatics techniques were used to screen and identify differentially expressed RNAs, with an absolute value of fold change (FC) greater than or equal to 1.2 and a false discovery rate (FDR) less than 0.05. At the same time, mitochondrial genes were obtained from the MitoCarta 3.0 database. Differential genes were then intersected with mitochondrial genes. The resulting crossover genes were subjected to GO, KEGG, and PPI analysis. Subsequently, the GSE65682 dataset was downloaded from the GEO database for survival analysis to assess the prognostic value of core genes, and GSE67652 was downloaded for ROC curve analysis to validate the diagnostic value of core genes. Finally, the localization of core genes was clarified through 10X single-cell sequencing.</p><p><strong>Results: </strong>The crossing of 314 sepsis differential genes and 1136 mitochondrial genes yielded 28 genes. GO and KEGG analysis showed that the crossover genes were mainly involved in the mitochondrion, mitochondrial matrix, and mitochondrial inner membrane. Survival analysis screened four genes that were significantly negatively associated with the prognosis of sepsis, namely FIS1, FKBP8, GLRX5, and GUK1. A comparison of peripheral blood RNA-seq results between the sepsis group and the SIRS group showed that the expression levels of these four genes were significantly decreased in the sepsis group compared to the SIRS group. ROC curve analysis based on GSE67652 indicates these four genes' high sensitivity and specificity for sepsis detection. Additionally, single-cell RNA sequencing found that the core genes were mainly expressed in macrophages, T cells, and B cells.</p><p><strong>Conclusions: </strong>Mitochondria-related genes (FIS1, FKBP8, GLRX5, GUK1) were underexpressed in the sepsis group, negatively correlated with survival, and mainly distributed in immune cells. This finding may guide studying the immune-related mechanisms of sepsis. This study protocol was reviewed by the Ethics Committee of the Affiliated Hospital of Southwest Medical University (ethics number: KY2018029), the clinical trial registration number is ChiCTR1900021261, and the registration date is February 4, 2019.</p>","PeriodicalId":9040,"journal":{"name":"BMC Immunology","volume":"25 1","pages":"32"},"PeriodicalIF":3.0,"publicationDate":"2024-05-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11097488/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140956164","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Potential role of IGF-1R in the interaction between orbital fibroblasts and B lymphocytes: an implication for B lymphocyte depletion in the active inflammatory phase of thyroid-associated ophthalmopathy. IGF-1R在眼眶成纤维细胞和B淋巴细胞相互作用中的潜在作用:甲状腺相关性眼病活动性炎症阶段B淋巴细胞耗竭的含义。
IF 2.9 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-05-11 DOI: 10.1186/s12865-024-00613-3
Renyan Wang, Delu Song, Yong Zhong, Hui Li

Background: Thyroid eye disease (TED) is an inflammatory process involving lymphocyte-mediated immune response and orbital tissue damage. The anti-insulin-like growth factor-1 receptor (IGF-1R) antibodies produced by B lymphocytes are involved in the activation of orbital fibroblasts and the inflammatory process of orbital tissue damage in TED. The purpose of this study was to explore the role of IGF-1R in the mechanistic connection between orbital fibroblasts and B lymphocytes in TED.

Methods: Orbital fibroblasts sampled from orbital connective tissues and peripheral B lymphocytes isolated from peripheral blood, which were obtained from 15 patients with TED and 15 control patients, were co-cultured at a ratio of 1:20. The level of IGF-1R expression in orbital fibroblasts was evaluated by flow cytometry and confocal microscopy. Transient B lymphocyte depletion was induced with anti-CD20 monoclonal antibody rituximab, while the IGF-1R pathway was blocked by the IGF-1R binding protein. The expression levels of interleukin-6 (IL-6) and regulated upon activation, normal T cell expressed and secreted (RANTES) in the co-culture model were quantified via ELISA.

Results: IGF-1R expression was significantly elevated in TED orbital fibroblasts compared to that of controls. A 24-h co-culture of orbital fibroblasts with peripheral B lymphocytes induced elevated expression levels of IL-6 and RANTES in each group (TED patients and controls), with the highest levels occurring in TED patients (T + T group). Rituximab and IGF-1R binding protein significantly inhibited increased levels of IL-6 and RANTES in the co-culture model of TED patients.

Conclusions: IGF-1R may mediate interaction between orbital fibroblasts and peripheral B lymphocytes; thus, blocking IGF-1R may reduce the local inflammatory response in TED. Rituximab-mediated B lymphocyte depletion played a role in inhibiting inflammatory responses in this in vitro co-culture model, providing a theoretical basis for the clinical application of anti-CD20 monoclonal antibodies in TED.

背景:甲状腺眼病(TED)是一种涉及淋巴细胞介导的免疫反应和眼眶组织损伤的炎症过程。B 淋巴细胞产生的抗胰岛素样生长因子-1 受体(IGF-1R)抗体参与了眼眶成纤维细胞的活化和 TED 眼眶组织损伤的炎症过程。本研究的目的是探讨IGF-1R在TED眼眶成纤维细胞与B淋巴细胞之间的机理联系中的作用:从15名TED患者和15名对照组患者的眼眶结缔组织中提取的眼眶成纤维细胞和从外周血中分离的外周B淋巴细胞按1:20的比例共同培养。流式细胞术和共聚焦显微镜评估了眼眶成纤维细胞中 IGF-1R 的表达水平。用抗CD20单克隆抗体利妥昔单抗诱导瞬时B淋巴细胞耗竭,同时用IGF-1R结合蛋白阻断IGF-1R通路。通过酶联免疫吸附测定了共培养模型中白细胞介素-6(IL-6)和正常T细胞表达和分泌的白细胞介素-6(RANTES)的表达水平:结果:与对照组相比,TED眼眶成纤维细胞的IGF-1R表达明显升高。眼眶成纤维细胞与外周B淋巴细胞共培养24小时后,各组(TED患者和对照组)的IL-6和RANTES表达水平均升高,其中TED患者(T + T组)的表达水平最高。利妥昔单抗和IGF-1R结合蛋白能显著抑制TED患者共培养模型中IL-6和RANTES水平的升高:结论:IGF-1R可能介导眼眶成纤维细胞与外周B淋巴细胞之间的相互作用;因此,阻断IGF-1R可减轻TED的局部炎症反应。利妥昔单抗介导的B淋巴细胞耗竭在该体外共培养模型中起到了抑制炎症反应的作用,为抗CD20单克隆抗体在TED中的临床应用提供了理论依据。
{"title":"Potential role of IGF-1R in the interaction between orbital fibroblasts and B lymphocytes: an implication for B lymphocyte depletion in the active inflammatory phase of thyroid-associated ophthalmopathy.","authors":"Renyan Wang, Delu Song, Yong Zhong, Hui Li","doi":"10.1186/s12865-024-00613-3","DOIUrl":"10.1186/s12865-024-00613-3","url":null,"abstract":"<p><strong>Background: </strong>Thyroid eye disease (TED) is an inflammatory process involving lymphocyte-mediated immune response and orbital tissue damage. The anti-insulin-like growth factor-1 receptor (IGF-1R) antibodies produced by B lymphocytes are involved in the activation of orbital fibroblasts and the inflammatory process of orbital tissue damage in TED. The purpose of this study was to explore the role of IGF-1R in the mechanistic connection between orbital fibroblasts and B lymphocytes in TED.</p><p><strong>Methods: </strong>Orbital fibroblasts sampled from orbital connective tissues and peripheral B lymphocytes isolated from peripheral blood, which were obtained from 15 patients with TED and 15 control patients, were co-cultured at a ratio of 1:20. The level of IGF-1R expression in orbital fibroblasts was evaluated by flow cytometry and confocal microscopy. Transient B lymphocyte depletion was induced with anti-CD20 monoclonal antibody rituximab, while the IGF-1R pathway was blocked by the IGF-1R binding protein. The expression levels of interleukin-6 (IL-6) and regulated upon activation, normal T cell expressed and secreted (RANTES) in the co-culture model were quantified via ELISA.</p><p><strong>Results: </strong>IGF-1R expression was significantly elevated in TED orbital fibroblasts compared to that of controls. A 24-h co-culture of orbital fibroblasts with peripheral B lymphocytes induced elevated expression levels of IL-6 and RANTES in each group (TED patients and controls), with the highest levels occurring in TED patients (T + T group). Rituximab and IGF-1R binding protein significantly inhibited increased levels of IL-6 and RANTES in the co-culture model of TED patients.</p><p><strong>Conclusions: </strong>IGF-1R may mediate interaction between orbital fibroblasts and peripheral B lymphocytes; thus, blocking IGF-1R may reduce the local inflammatory response in TED. Rituximab-mediated B lymphocyte depletion played a role in inhibiting inflammatory responses in this in vitro co-culture model, providing a theoretical basis for the clinical application of anti-CD20 monoclonal antibodies in TED.</p>","PeriodicalId":9040,"journal":{"name":"BMC Immunology","volume":"25 1","pages":"31"},"PeriodicalIF":2.9,"publicationDate":"2024-05-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11088061/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140908175","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Atypical skin conditions of the neck and back as a dermal manifestation of anti-HMGCR antibody-positive myopathy. 颈部和背部的非典型皮肤病是抗-HMGCR抗体阳性肌病的皮肤表现。
IF 2.9 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-05-11 DOI: 10.1186/s12865-024-00622-2
Takashi Kurashige, Rie Nakamura, Tomomi Murao, Naoko Mine, Mayu Sato, Riho Katsumata, Yuhei Kanaya, Yoriko Dodo, Tomohito Sugiura, Tomohiko Ohshita

Background: Immune-mediated necrotizing myopathy (IMNM) is an idiopathic inflammatory myopathy (IIM). Though patients with IMNM were not considered to show skin rash, several reports have showed atypical skin conditions in patients with anti-3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMGCR) antibody-positive IMNM (HMGCR-IMNM). The incidence and phenotype of skin conditions in patients with HMGCR-IMNM are not fully known.

Results: Among the 100 IIM patients diagnosed from April 2015 through August 2022, 34 (34%) presented some form of skin condition, with 27 having typical skin rashes; this included 13 patients with dermatomyositis (DM), 8 with anti-synthetase syndrome (ASS), and 6 with IMNM. Meanwhile, 8 of 19 patients with HMGCR-IMNM (42%) presented atypical skin lesions, but no patients with other IIMs did (p < 0.001). Skin eruption with ash-like scales was observed in four HMGCR-IMNM patients, and non-scaly red patches and lumps in the other four patients; accordingly, their skin manifestations were considered as other dermal diseases except for IIM. However, skin and muscle biopsies revealed the atypical skin conditions of patients with HMGCR-IMNM to have the same pathological background, formed by Bcl-2-positive lymphocyte infiltrations.

Conclusions: HMGCR-IMNM patients frequently have atypical skin conditions of the neck and back. Skin biopsy specimens from these lesions showed the same Bcl-2-positive lymphocytic infiltrations as muscle biopsy specimens regardless of the different gross dermal findings. Thus, such atypical skin conditions may be suggestive for HMGCR-IMNM.

背景:免疫介导的坏死性肌病(IMNM)是一种特发性炎症性肌病(IIM)。尽管免疫介导的坏死性肌病(IMNM)患者被认为不会出现皮疹,但一些报告显示,抗-3-羟基-3-甲基戊二酰辅酶 A 还原酶(HMGCR)抗体阳性的免疫介导的坏死性肌病(HMGCR-IMNM)患者会出现非典型皮肤症状。HMGCR-IMNM患者皮肤病的发病率和表型尚不完全清楚:在2015年4月至2022年8月期间确诊的100例IIM患者中,有34例(34%)出现了某种形式的皮肤状况,其中27例有典型的皮疹;这包括13例皮肌炎(DM)患者、8例抗合成酶综合征(ASS)患者和6例IMNM患者。与此同时,19 名 HMGCR-IMNM 患者中有 8 人(42%)出现了非典型皮损,而其他 IIM 患者中没有人出现非典型皮损(P 结论):HMGCR-IMNM患者的颈部和背部经常出现非典型皮肤病。这些病变的皮肤活检标本显示出与肌肉活检标本相同的 Bcl-2 阳性淋巴细胞浸润,而不考虑不同的皮肤大体结果。因此,这种非典型皮肤病可能提示存在 HMGCR-IMNM。
{"title":"Atypical skin conditions of the neck and back as a dermal manifestation of anti-HMGCR antibody-positive myopathy.","authors":"Takashi Kurashige, Rie Nakamura, Tomomi Murao, Naoko Mine, Mayu Sato, Riho Katsumata, Yuhei Kanaya, Yoriko Dodo, Tomohito Sugiura, Tomohiko Ohshita","doi":"10.1186/s12865-024-00622-2","DOIUrl":"10.1186/s12865-024-00622-2","url":null,"abstract":"<p><strong>Background: </strong>Immune-mediated necrotizing myopathy (IMNM) is an idiopathic inflammatory myopathy (IIM). Though patients with IMNM were not considered to show skin rash, several reports have showed atypical skin conditions in patients with anti-3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMGCR) antibody-positive IMNM (HMGCR-IMNM). The incidence and phenotype of skin conditions in patients with HMGCR-IMNM are not fully known.</p><p><strong>Results: </strong>Among the 100 IIM patients diagnosed from April 2015 through August 2022, 34 (34%) presented some form of skin condition, with 27 having typical skin rashes; this included 13 patients with dermatomyositis (DM), 8 with anti-synthetase syndrome (ASS), and 6 with IMNM. Meanwhile, 8 of 19 patients with HMGCR-IMNM (42%) presented atypical skin lesions, but no patients with other IIMs did (p < 0.001). Skin eruption with ash-like scales was observed in four HMGCR-IMNM patients, and non-scaly red patches and lumps in the other four patients; accordingly, their skin manifestations were considered as other dermal diseases except for IIM. However, skin and muscle biopsies revealed the atypical skin conditions of patients with HMGCR-IMNM to have the same pathological background, formed by Bcl-2-positive lymphocyte infiltrations.</p><p><strong>Conclusions: </strong>HMGCR-IMNM patients frequently have atypical skin conditions of the neck and back. Skin biopsy specimens from these lesions showed the same Bcl-2-positive lymphocytic infiltrations as muscle biopsy specimens regardless of the different gross dermal findings. Thus, such atypical skin conditions may be suggestive for HMGCR-IMNM.</p>","PeriodicalId":9040,"journal":{"name":"BMC Immunology","volume":"25 1","pages":"30"},"PeriodicalIF":2.9,"publicationDate":"2024-05-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11088225/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140908172","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
GNUV201, a novel human/mouse cross-reactive and low pH-selective anti-PD-1 monoclonal antibody for cancer immunotherapy. 用于癌症免疫疗法的新型人/鼠交叉反应和低 pH 选择性抗 PD-1 单克隆抗体 GNUV201。
IF 2.9 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-05-11 DOI: 10.1186/s12865-024-00609-z
Hae-Mi Kim, Kyoung-Jin Kim, Kwanghyun Lee, Myeong Jin Yoon, Jenny Choih, Tae-Joon Hong, Eun Ji Cho, Hak-Jun Jung, Jayoung Kim, Ji Soo Park, Hye Young Na, Yong-Seok Heo, Chae Gyu Park, Heungrok Park, Sungho Han, Donggoo Bae

Background: Several PD-1 antibodies approved as anti-cancer therapies work by blocking the interaction of PD-1 with its ligand PD-L1, thus restoring anti-cancer T cell activities. These PD-1 antibodies lack inter-species cross-reactivity, necessitating surrogate antibodies for preclinical studies, which may limit the predictability and translatability of the studies.

Results: To overcome this limitation, we have developed an inter-species cross-reactive PD-1 antibody, GNUV201, by utilizing an enhanced diversity mouse platform (SHINE MOUSE™). GNUV201 equally binds to human PD-1 and mouse PD-1, equally inhibits the binding of human PD-1/PD-L1 and mouse PD-1/PD-L1, and effectively suppresses tumor growth in syngeneic mouse models. The epitope of GNUV201 mapped to the "FG loop" of hPD-1, distinct from those of Keytruda® ("C'D loop") and Opdivo® (N-term). Notably, the structural feature where the protruding epitope loop fits into GNUV201's binding pocket supports the enhanced binding affinity due to slower dissociation (8.7 times slower than Keytruda®). Furthermore, GNUV201 shows a stronger binding affinity at pH 6.0 (5.6 times strong than at pH 7.4), which mimics the hypoxic and acidic tumor microenvironment (TME). This phenomenon is not observed with marketed antibodies (Keytruda®, Opdivo®), implying that GNUV201 achieves more selective binding to and better occupancy on PD-1 in the TME.

Conclusions: In summary, GNUV201 exhibited enhanced affinity for PD-1 with slow dissociation and preferential binding in TME-mimicking low pH. Human/monkey/mouse inter-species cross-reactivity of GNUV201 could enable more predictable and translatable efficacy and toxicity preclinical studies. These results suggest that GNUV201 could be an ideal antibody candidate for anti-cancer drug development.

背景:几种被批准为抗癌疗法的 PD-1 抗体通过阻断 PD-1 与其配体 PD-L1 的相互作用,从而恢复抗癌 T 细胞的活性。这些 PD-1 抗体缺乏种间交叉反应,因此临床前研究必须使用替代抗体,这可能会限制研究的可预测性和可转化性:为了克服这一局限性,我们利用增强多样性小鼠平台(SHINE MOUSE™)开发了一种跨物种交叉反应的 PD-1 抗体 GNUV201。GNUV201 与人 PD-1 和小鼠 PD-1 的结合率相同,同样能抑制人 PD-1/PD-L1 和小鼠 PD-1/PD-L1 的结合,并能有效抑制合成小鼠模型中肿瘤的生长。GNUV201 的表位映射到 hPD-1 的 "FG 环",与 Keytruda® ("C'D 环")和 Opdivo® (N-端)的表位不同。值得注意的是,突出的表位环与 GNUV201 的结合口袋相吻合,这一结构特征支持了因解离速度较慢(比 Keytruda® 慢 8.7 倍)而增强的结合亲和力。此外,GNUV201 在模拟缺氧和酸性肿瘤微环境(TME)的 pH 值为 6.0 时显示出更强的结合亲和力(是 pH 值为 7.4 时的 5.6 倍)。这种现象在市场上销售的抗体(Keytruda®、Opdivo®)中没有观察到,这意味着GNUV201与TME中的PD-1实现了更有选择性的结合和更好的占据:总之,GNUV201 对 PD-1 的亲和力增强,解离速度慢,在模拟低 pH 的 TME 中优先结合。GNUV201 的人/猴/鼠种间交叉反应性可以使临床前研究的疗效和毒性更具可预测性和可转化性。这些结果表明,GNUV201 可能是抗癌药物开发的理想候选抗体。
{"title":"GNUV201, a novel human/mouse cross-reactive and low pH-selective anti-PD-1 monoclonal antibody for cancer immunotherapy.","authors":"Hae-Mi Kim, Kyoung-Jin Kim, Kwanghyun Lee, Myeong Jin Yoon, Jenny Choih, Tae-Joon Hong, Eun Ji Cho, Hak-Jun Jung, Jayoung Kim, Ji Soo Park, Hye Young Na, Yong-Seok Heo, Chae Gyu Park, Heungrok Park, Sungho Han, Donggoo Bae","doi":"10.1186/s12865-024-00609-z","DOIUrl":"10.1186/s12865-024-00609-z","url":null,"abstract":"<p><strong>Background: </strong>Several PD-1 antibodies approved as anti-cancer therapies work by blocking the interaction of PD-1 with its ligand PD-L1, thus restoring anti-cancer T cell activities. These PD-1 antibodies lack inter-species cross-reactivity, necessitating surrogate antibodies for preclinical studies, which may limit the predictability and translatability of the studies.</p><p><strong>Results: </strong>To overcome this limitation, we have developed an inter-species cross-reactive PD-1 antibody, GNUV201, by utilizing an enhanced diversity mouse platform (SHINE MOUSE™). GNUV201 equally binds to human PD-1 and mouse PD-1, equally inhibits the binding of human PD-1/PD-L1 and mouse PD-1/PD-L1, and effectively suppresses tumor growth in syngeneic mouse models. The epitope of GNUV201 mapped to the \"FG loop\" of hPD-1, distinct from those of Keytruda<sup>®</sup> (\"C'D loop\") and Opdivo<sup>®</sup> (N-term). Notably, the structural feature where the protruding epitope loop fits into GNUV201's binding pocket supports the enhanced binding affinity due to slower dissociation (8.7 times slower than Keytruda<sup>®</sup>). Furthermore, GNUV201 shows a stronger binding affinity at pH 6.0 (5.6 times strong than at pH 7.4), which mimics the hypoxic and acidic tumor microenvironment (TME). This phenomenon is not observed with marketed antibodies (Keytruda<sup>®</sup>, Opdivo<sup>®</sup>), implying that GNUV201 achieves more selective binding to and better occupancy on PD-1 in the TME.</p><p><strong>Conclusions: </strong>In summary, GNUV201 exhibited enhanced affinity for PD-1 with slow dissociation and preferential binding in TME-mimicking low pH. Human/monkey/mouse inter-species cross-reactivity of GNUV201 could enable more predictable and translatable efficacy and toxicity preclinical studies. These results suggest that GNUV201 could be an ideal antibody candidate for anti-cancer drug development.</p>","PeriodicalId":9040,"journal":{"name":"BMC Immunology","volume":"25 1","pages":"29"},"PeriodicalIF":2.9,"publicationDate":"2024-05-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11088064/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140903925","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effect of immune-modulating metronomic capecitabine as an adjuvant therapy in locoregionally advanced nasopharyngeal carcinoma. 免疫调节甲氧卡培他滨作为局部晚期鼻咽癌辅助疗法的效果。
IF 3 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-05-06 DOI: 10.1186/s12865-024-00621-3
Qianyong He, Xiuling Luo, Lina Liu, Chaofen Zhao, Zhuoling Li, Feng Jin

Introduction: Metronomic capecitabine used as an adjuvant therapy improves survival in patients with locoregionally advanced nasopharyngeal carcinoma (LA-NPC). This therapeutic approach may also contribute to improving immune function, consequently enhancing overall therapeutic efficacy.

Aim: We aimed to evaluate the effect of metronomic capecitabine as adjuvant therapy on immune function and survival in cases of LA-NPC.

Subjects and methods: 28 patients with LA-NPC were enrolled in the study and equally assigned to two groups of 14 each: experimental and control group. The experimental group received induction chemotherapy + concurrent chemotherapy + adjuvant chemotherapy as well as oral capecitabine at a dose of 650 mg/m² of body surface area twice daily for 1 year, with the option to discontinue in case of intolerance. The control group did not receive additional chemotherapy or targeted drugs after the induction chemotherapy + concurrent chemoradiotherapy; however, they were followed up regularly. Changes in immune function and survival were compared between the two groups.

Results: The median follow-up time was 43.5 months. One year after adjuvant chemotherapy, the experimental group showed higher levels of CD8 + cells, CD28 + CD8 + cells, and activated CD8 + cells compared to the control group (P < 0.05). The CD4/CD8 ratio and proportion of monocyte-derived dendritic cells were also higher in the experimental group than in the control group, but the difference was not statistically significant (P ≥ 0.05). Comparisons of 3-year overall survival, local-regional recurrence-free survival, progression-free survival, and distant metastasis-free survival between the two groups showed percentages of 92.9% vs. 78.6%, 92.9% vs. 92.9%, 78.6% vs. 71.4%, and 85.7% vs. 0.78 0.6% respectively, but these differences were not significant (P > 0 0.05 ).

Conclusion: Metronomic capecitabine chemotherapy was observed to induce an immunomodulatory effect in LA-NPC.

Trial registration: NCT02958111, date of registration 04-11-2016.

简介将卡培他滨作为辅助疗法可提高局部晚期鼻咽癌(LA-NPC)患者的生存率。目的:我们旨在评估甲氧卡培他滨作为辅助疗法对 LA-NPC 患者免疫功能和生存期的影响。研究对象和方法:28 名 LA-NPC 患者被纳入研究,平均分为两组,每组 14 人:实验组和对照组。实验组接受诱导化疗+同期化疗+辅助化疗,以及口服卡培他滨,剂量为 650 毫克/平方米体表面积,每天两次,持续一年,如不耐受可选择停药。对照组在诱导化疗+同期化放疗后没有接受额外的化疗或靶向药物治疗;但他们会定期接受随访。对两组患者的免疫功能变化和存活率进行比较:中位随访时间为43.5个月。结果:中位随访时间为 43.5 个月,辅助化疗一年后,实验组的 CD8 + 细胞、CD28 + CD8 + 细胞和活化 CD8 + 细胞水平高于对照组(P 0 0.05):结论:观察到卡培他滨序贯化疗对 LA-NPC 有免疫调节作用:试验注册:NCT02958111,注册日期:2016年11月4日。
{"title":"Effect of immune-modulating metronomic capecitabine as an adjuvant therapy in locoregionally advanced nasopharyngeal carcinoma.","authors":"Qianyong He, Xiuling Luo, Lina Liu, Chaofen Zhao, Zhuoling Li, Feng Jin","doi":"10.1186/s12865-024-00621-3","DOIUrl":"10.1186/s12865-024-00621-3","url":null,"abstract":"<p><strong>Introduction: </strong>Metronomic capecitabine used as an adjuvant therapy improves survival in patients with locoregionally advanced nasopharyngeal carcinoma (LA-NPC). This therapeutic approach may also contribute to improving immune function, consequently enhancing overall therapeutic efficacy.</p><p><strong>Aim: </strong>We aimed to evaluate the effect of metronomic capecitabine as adjuvant therapy on immune function and survival in cases of LA-NPC.</p><p><strong>Subjects and methods: </strong>28 patients with LA-NPC were enrolled in the study and equally assigned to two groups of 14 each: experimental and control group. The experimental group received induction chemotherapy + concurrent chemotherapy + adjuvant chemotherapy as well as oral capecitabine at a dose of 650 mg/m² of body surface area twice daily for 1 year, with the option to discontinue in case of intolerance. The control group did not receive additional chemotherapy or targeted drugs after the induction chemotherapy + concurrent chemoradiotherapy; however, they were followed up regularly. Changes in immune function and survival were compared between the two groups.</p><p><strong>Results: </strong>The median follow-up time was 43.5 months. One year after adjuvant chemotherapy, the experimental group showed higher levels of CD8 + cells, CD28 + CD8 + cells, and activated CD8 + cells compared to the control group (P < 0.05). The CD4/CD8 ratio and proportion of monocyte-derived dendritic cells were also higher in the experimental group than in the control group, but the difference was not statistically significant (P ≥ 0.05). Comparisons of 3-year overall survival, local-regional recurrence-free survival, progression-free survival, and distant metastasis-free survival between the two groups showed percentages of 92.9% vs. 78.6%, 92.9% vs. 92.9%, 78.6% vs. 71.4%, and 85.7% vs. 0.78 0.6% respectively, but these differences were not significant (P > 0 0.05 ).</p><p><strong>Conclusion: </strong>Metronomic capecitabine chemotherapy was observed to induce an immunomodulatory effect in LA-NPC.</p><p><strong>Trial registration: </strong>NCT02958111, date of registration 04-11-2016.</p>","PeriodicalId":9040,"journal":{"name":"BMC Immunology","volume":"25 1","pages":"28"},"PeriodicalIF":3.0,"publicationDate":"2024-05-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11071185/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140847978","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A novel chimeric vaccine containing multiple epitopes for simulating robust immune activation against Klebsiella pneumoniae 一种含有多个表位的新型嵌合疫苗,可模拟针对肺炎克雷伯菌的强效免疫激活
IF 3 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-05-05 DOI: 10.1186/s12865-024-00617-z
Morteza Hakimian, Abbas Doosti, Ali Sharifzadeh
Due to antibiotic resistance, the Klebsiella genus is linked to morbidity and death, necessitating the development of a universally protective vaccine against Klebsiella pathogens. Core sequence analysis prioritized non-redundant host molecules and expected lipid bilayer peptides from fully sequenced Klebsiella genomes. These proteins were refined to identify epitopes, examining their immunogenicity, toxicity, solubility, and interaction with MHC alleles. Epitopes were linked to CPG ODN C274 via EAAAK, HEYGAEALERAG, and GGGS linkers to enhance immunological responses. The vaccine’s tertiary structure was modelled and docked with MHC-I and MHC-II. Fifty-five proteins were recognized in the Vaxign collection as having remarkable features. Twenty-three proteins with potential pathogenicity were then identified. Eight options for vaccines emerged after the immunogenicity of proteins was examined. The best antigens were three proteins: MrkD, Iron-regulated lipid membrane polypeptides, and RmpA. These compounds were selected for their sensitivity. The structural protein sequences of K. pneumoniae were utilized to identify seven CTL epitopes, seven HTL epitopes, and seven LBL epitopes, respectively. The produced immunization displayed a stable contact with the receptors, based on molecular dynamic simulations lasting 250 nanoseconds. Intermolecular binding free energies also indicated the dominance of the van der Waals and electrostatic energies. In summary, the results of this study might help scientists develop a novel vaccine to prevent K. pneumoniae infections.
由于抗生素耐药性,克雷伯氏菌属与发病和死亡有关,因此有必要开发一种针对克雷伯氏菌病原体的通用保护性疫苗。核心序列分析从完全测序的克雷伯氏菌基因组中优先选择了非冗余宿主分子和预期脂双层肽。对这些蛋白质进行了提炼,以确定表位,检查其免疫原性、毒性、可溶性以及与 MHC 等位基因的相互作用。表位通过 EAAAK、HEYGAEALERAG 和 GGGS 连接器与 CPG ODN C274 连接,以增强免疫反应。对疫苗的三级结构进行了建模,并与 MHC-I 和 MHC-II 进行了对接。Vaxign 收集的 55 种蛋白质被认为具有显著特征。随后又确定了 23 种具有潜在致病性的蛋白质。在对蛋白质的免疫原性进行检查后,出现了八种疫苗选择。最佳抗原是三种蛋白质:MrkD、铁调节脂膜多肽和 RmpA。这些化合物因其敏感性而被选中。利用肺炎双球菌的结构蛋白序列,分别确定了七个 CTL 表位、七个 HTL 表位和七个 LBL 表位。根据持续 250 纳秒的分子动力学模拟,所产生的免疫与受体有稳定的接触。分子间结合自由能也表明范德华能和静电能占主导地位。总之,这项研究的结果可能有助于科学家们开发出一种新型疫苗来预防肺炎双球菌感染。
{"title":"A novel chimeric vaccine containing multiple epitopes for simulating robust immune activation against Klebsiella pneumoniae","authors":"Morteza Hakimian, Abbas Doosti, Ali Sharifzadeh","doi":"10.1186/s12865-024-00617-z","DOIUrl":"https://doi.org/10.1186/s12865-024-00617-z","url":null,"abstract":"Due to antibiotic resistance, the Klebsiella genus is linked to morbidity and death, necessitating the development of a universally protective vaccine against Klebsiella pathogens. Core sequence analysis prioritized non-redundant host molecules and expected lipid bilayer peptides from fully sequenced Klebsiella genomes. These proteins were refined to identify epitopes, examining their immunogenicity, toxicity, solubility, and interaction with MHC alleles. Epitopes were linked to CPG ODN C274 via EAAAK, HEYGAEALERAG, and GGGS linkers to enhance immunological responses. The vaccine’s tertiary structure was modelled and docked with MHC-I and MHC-II. Fifty-five proteins were recognized in the Vaxign collection as having remarkable features. Twenty-three proteins with potential pathogenicity were then identified. Eight options for vaccines emerged after the immunogenicity of proteins was examined. The best antigens were three proteins: MrkD, Iron-regulated lipid membrane polypeptides, and RmpA. These compounds were selected for their sensitivity. The structural protein sequences of K. pneumoniae were utilized to identify seven CTL epitopes, seven HTL epitopes, and seven LBL epitopes, respectively. The produced immunization displayed a stable contact with the receptors, based on molecular dynamic simulations lasting 250 nanoseconds. Intermolecular binding free energies also indicated the dominance of the van der Waals and electrostatic energies. In summary, the results of this study might help scientists develop a novel vaccine to prevent K. pneumoniae infections.","PeriodicalId":9040,"journal":{"name":"BMC Immunology","volume":"104 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140834408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Atypical memory B cells increase in the peripheral blood of patients with breast cancer regardless of lymph node involvement 乳腺癌患者外周血中的非典型记忆 B 细胞增多,与淋巴结受累无关
IF 3 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-05-03 DOI: 10.1186/s12865-024-00620-4
Atefeh Azizi, Fereshteh Mehdipour, Morteza Samadi, Reza Rasolmali, Abdol-Rasoul Talei, Abbas Ghaderi
Breast cancer is the most common cancer in females. The immune system has a crucial role in the fight against cancer. B and T cells, the two main components of the adaptive immunity, are critical players that specifically target tumor cells. However, B cells, in contrast to T cells, and their role in cancer inhibition or progression is less investigated. Accordingly, in this study, we assessed and compared the frequency of naïve and different subsets of memory B cells in the peripheral blood of patients with breast cancer and healthy women. We found no significant differences in the frequencies of peripheral CD19+ B cells between the patients and controls. However, there was a significant decrease in the frequency of CD19+IgM+ B cells in patients compared to the control group (P=0.030). Moreover, the patients exhibited higher percentages of atypical memory B cells (CD19+CD27‒IgM‒, P=0.006) and a non-significant increasing trend in switched memory B cells (CD19+CD27+IgM‒, P=0.074). Further analysis revealed a higher frequency of atypical memory B cells (aMBCs) in the peripheral blood of patients without lymph node involvement as well as those with a tumor size greater than 2cm or with estrogen receptor (ER) negative/progesterone receptor (PR) negative tumors, compared with controls (P=0.030, P=0.040, P=0.031 and P=0.054, respectively). Atypical memory B cells (CD19+CD27‒IgM‒) showed a significant increase in the peripheral blood of patients with breast cancer compared to the control group. This increase seems to be associated with tumor characteristics. Nevertheless, additional research is necessary to determine the precise role of these cells during breast cancer progression
乳腺癌是女性最常见的癌症。免疫系统在抗癌过程中起着至关重要的作用。B 细胞和 T 细胞是适应性免疫的两个主要组成部分,它们是专门针对肿瘤细胞的关键角色。然而,与 T 细胞相比,B 细胞及其在癌症抑制或进展中的作用却鲜有研究。因此,在这项研究中,我们评估并比较了乳腺癌患者和健康女性外周血中原始 B 细胞和不同亚群记忆 B 细胞的频率。我们发现,患者和对照组外周 CD19+ B 细胞的频率没有明显差异。然而,与对照组相比,患者体内 CD19+IgM+ B 细胞的频率明显下降(P=0.030)。此外,患者的非典型记忆 B 细胞(CD19+CD27-IgM-,P=0.006)比例较高,而转换记忆 B 细胞(CD19+CD27+IgM-,P=0.074)的增加趋势不明显。进一步分析发现,与对照组相比,无淋巴结受累、肿瘤大小超过2厘米或雌激素受体(ER)阴性/孕激素受体(PR)阴性的患者外周血中非典型记忆B细胞(aMBCs)的频率更高(分别为P=0.030、P=0.040、P=0.031和P=0.054)。与对照组相比,乳腺癌患者外周血中的非典型记忆 B 细胞(CD19+CD27-IgM-)显著增加。这种增加似乎与肿瘤特征有关。然而,要确定这些细胞在乳腺癌进展过程中的确切作用,还需要进行更多的研究。
{"title":"Atypical memory B cells increase in the peripheral blood of patients with breast cancer regardless of lymph node involvement","authors":"Atefeh Azizi, Fereshteh Mehdipour, Morteza Samadi, Reza Rasolmali, Abdol-Rasoul Talei, Abbas Ghaderi","doi":"10.1186/s12865-024-00620-4","DOIUrl":"https://doi.org/10.1186/s12865-024-00620-4","url":null,"abstract":"Breast cancer is the most common cancer in females. The immune system has a crucial role in the fight against cancer. B and T cells, the two main components of the adaptive immunity, are critical players that specifically target tumor cells. However, B cells, in contrast to T cells, and their role in cancer inhibition or progression is less investigated. Accordingly, in this study, we assessed and compared the frequency of naïve and different subsets of memory B cells in the peripheral blood of patients with breast cancer and healthy women. We found no significant differences in the frequencies of peripheral CD19+ B cells between the patients and controls. However, there was a significant decrease in the frequency of CD19+IgM+ B cells in patients compared to the control group (P=0.030). Moreover, the patients exhibited higher percentages of atypical memory B cells (CD19+CD27‒IgM‒, P=0.006) and a non-significant increasing trend in switched memory B cells (CD19+CD27+IgM‒, P=0.074). Further analysis revealed a higher frequency of atypical memory B cells (aMBCs) in the peripheral blood of patients without lymph node involvement as well as those with a tumor size greater than 2cm or with estrogen receptor (ER) negative/progesterone receptor (PR) negative tumors, compared with controls (P=0.030, P=0.040, P=0.031 and P=0.054, respectively). Atypical memory B cells (CD19+CD27‒IgM‒) showed a significant increase in the peripheral blood of patients with breast cancer compared to the control group. This increase seems to be associated with tumor characteristics. Nevertheless, additional research is necessary to determine the precise role of these cells during breast cancer progression","PeriodicalId":9040,"journal":{"name":"BMC Immunology","volume":"41 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140834291","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The role of the immune system in early-onset schizophrenia: identifying immune characteristic genes and cells from peripheral blood 免疫系统在早发型精神分裂症中的作用:从外周血中识别免疫特征基因和细胞
IF 3 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-05-03 DOI: 10.1186/s12865-024-00618-y
Zi Chen, Yuxue Li, Yao Gao, Xiaoxuan Fan, Xinzhe Du, Xinrong Li, Zhifen Liu, Sha Liu, Xiaohua Cao
Early-onset schizophrenia (EOS) is a type of schizophrenia (SCZ) with an age of onset of < 18 years. An abnormal inflammatory immune system may be involved in the occurrence and development of SCZ. We aimed to identify the immune characteristic genes and cells involved in EOS and to further explore the pathogenesis of EOS from the perspective of immunology. We obtained microarray data from a whole-genome mRNA expression in peripheral blood mononuclear cells (PBMCs); 19 patients with EOS (age range: 14.79 ± 1.90) and 18 healthy controls (HC) (age range: 15.67 ± 2.40) were involved. We screened for differentially expressed genes (DEGs) using the Limma software package and modular genes using weighted gene co-expression network analysis (WGCNA). In addition, to identify immune characteristic genes and cells, we performed enrichment analysis, immune infiltration analysis, and receiver operating characteristic (ROC) curve analysis; we also used a random forest (RF), a support vector machine (SVM), and the LASSO-Cox algorithm. We selected the following immune characteristic genes: CCL8, PSMD1, AVPR1B and SEMG1. We employed a RF, a SVM, and the LASSO-Cox algorithm. We identified the following immune characteristic cells: activated mast cells, CD4+ memory resting T cells, resting mast cells, neutrophils and CD4+ memory activated T cells. In addition, the AUC values of the immune characteristic genes and cells were all > 0.7. Our results indicate that immune system function is altered in SCZ. In addition, CCL8, PSMD1, AVPR1B and SEMG1 may regulate peripheral immune cells in EOS. Further, immune characteristic genes and cells are expected to be diagnostic markers and therapeutic targets of SCZ.
早发型精神分裂症(EOS)是精神分裂症(SCZ)的一种类型,发病年龄为 0.7 岁。我们的研究结果表明,SCZ 患者的免疫系统功能发生了改变。此外,CCL8、PSMD1、AVPR1B 和 SEMG1 可调控 EOS 的外周免疫细胞。此外,免疫特征基因和细胞有望成为 SCZ 的诊断标记和治疗靶点。
{"title":"The role of the immune system in early-onset schizophrenia: identifying immune characteristic genes and cells from peripheral blood","authors":"Zi Chen, Yuxue Li, Yao Gao, Xiaoxuan Fan, Xinzhe Du, Xinrong Li, Zhifen Liu, Sha Liu, Xiaohua Cao","doi":"10.1186/s12865-024-00618-y","DOIUrl":"https://doi.org/10.1186/s12865-024-00618-y","url":null,"abstract":"Early-onset schizophrenia (EOS) is a type of schizophrenia (SCZ) with an age of onset of < 18 years. An abnormal inflammatory immune system may be involved in the occurrence and development of SCZ. We aimed to identify the immune characteristic genes and cells involved in EOS and to further explore the pathogenesis of EOS from the perspective of immunology. We obtained microarray data from a whole-genome mRNA expression in peripheral blood mononuclear cells (PBMCs); 19 patients with EOS (age range: 14.79 ± 1.90) and 18 healthy controls (HC) (age range: 15.67 ± 2.40) were involved. We screened for differentially expressed genes (DEGs) using the Limma software package and modular genes using weighted gene co-expression network analysis (WGCNA). In addition, to identify immune characteristic genes and cells, we performed enrichment analysis, immune infiltration analysis, and receiver operating characteristic (ROC) curve analysis; we also used a random forest (RF), a support vector machine (SVM), and the LASSO-Cox algorithm. We selected the following immune characteristic genes: CCL8, PSMD1, AVPR1B and SEMG1. We employed a RF, a SVM, and the LASSO-Cox algorithm. We identified the following immune characteristic cells: activated mast cells, CD4+ memory resting T cells, resting mast cells, neutrophils and CD4+ memory activated T cells. In addition, the AUC values of the immune characteristic genes and cells were all > 0.7. Our results indicate that immune system function is altered in SCZ. In addition, CCL8, PSMD1, AVPR1B and SEMG1 may regulate peripheral immune cells in EOS. Further, immune characteristic genes and cells are expected to be diagnostic markers and therapeutic targets of SCZ.","PeriodicalId":9040,"journal":{"name":"BMC Immunology","volume":"83 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140834407","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
BMC Immunology
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1