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Ptprd deficiency promotes tau hyperphosphorylation and impairs cognitive function in aged mice. Ptprd缺乏促进老年小鼠tau过度磷酸化并损害认知功能。
IF 4.3 2区 生物学 Q1 BIOLOGY Pub Date : 2025-05-06 DOI: 10.1186/s40659-025-00607-4
Analía Foncea, Nayhara Franchini, Isidora Tobar, Sebastián Thienel, Ignacio N Retamal, Gonzalo I Cancino, Francisca Cornejo

Background: Tau phosphorylation is a tightly regulated process that ensures proper neuronal function. Indeed, hyperphosphorylation of tau closely contributes to neuronal dysfunction leading to neurodegenerative diseases, including tauopathies, which are characterized by excessive and aberrant tau phosphorylation and cognitive decline. Therefore, it is important to understand how to regulate its phosphorylation. In this regard, the protein tyrosine phosphatase receptor delta (PTPRD) has been genetically implicated in tau pathology in humans, but the mechanisms underlying its role in tau regulation remain unclear. This study investigates the impact of Ptprd deficiency on tau phosphorylation, cognitive function, neuroinflammation, and synaptic markers in aging mice.

Results: Mice lacking Ptprd showed increased tau phosphorylation at multiple sites associated with its pathological aggregation. This effect was accompanied by the activation of the tau-related kinase Abl1, particularly in the hippocampus. Behavioral assessments revealed significant impairments in learning and memory, demonstrating the functional impact of these alterations. Moreover, Ptprd knockout mice showed increased microgliosis in both the entorhinal cortex and the hippocampus, suggesting a pro-inflammatory response. Furthermore, the synaptic protein PSD95 was also reduced in the cortex, indicating potential synaptic dysfunction.

Conclusions: The loss of Ptprd leads to increased tau phosphorylation, cognitive impairments, microgliosis, and synaptic alterations in older mice. Our findings also suggest that Ptprd plays a critical role in maintaining tau homeostasis through the Abl1 kinase. This indicates a new potential therapeutic approach for tauopathies, where PTPRD could serve a protective role against tau-related pathologies and may act as a key modulator in disease progression.

背景:Tau磷酸化是一个严格调控的过程,以确保适当的神经元功能。事实上,tau的过度磷酸化与神经功能障碍密切相关,导致神经退行性疾病,包括tau病,其特征是过度和异常的tau磷酸化和认知能力下降。因此,了解如何调节其磷酸化是很重要的。在这方面,蛋白酪氨酸磷酸酶受体delta (PTPRD)在遗传上与人类tau病理有关,但其在tau调节中的作用机制尚不清楚。本研究探讨了Ptprd缺乏对衰老小鼠tau磷酸化、认知功能、神经炎症和突触标志物的影响。结果:缺乏Ptprd的小鼠在其病理聚集相关的多个位点的tau磷酸化增加。这种效应伴随着tau蛋白相关激酶Abl1的激活,特别是在海马中。行为评估显示了学习和记忆方面的显著损伤,证明了这些改变对功能的影响。此外,Ptprd基因敲除小鼠内嗅皮质和海马的小胶质细胞增多,表明有促炎反应。此外,突触蛋白PSD95也在皮层中减少,表明潜在的突触功能障碍。结论:Ptprd缺失导致老年小鼠tau磷酸化增加、认知障碍、小胶质细胞增生和突触改变。我们的研究结果还表明,Ptprd通过Abl1激酶在维持tau稳态中起着关键作用。这表明了一种新的潜在治疗方法,PTPRD可以对tau相关病理起保护作用,并可能作为疾病进展的关键调节剂。
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引用次数: 0
Ameliorative effects of date palm kernel extract against fenpropathrin induced male reproductive toxicity. 枣仁提取物对甲氰菊酯雄性生殖毒性的改善作用。
IF 4.3 2区 生物学 Q1 BIOLOGY Pub Date : 2025-05-06 DOI: 10.1186/s40659-025-00605-6
Maher M Soliman, Marsail S Nashed, Eman I Hassanen, Marwa Y Issa, Abdelbary M Prince, Ahmed M Hussien, Adel F Tohamy

Background: The purpose of this work was to examine the fundamental mechanisms of reproductive toxicity in rat models following exposure to Fenpropathrin (FNP). Furthermore, our study explores the novel impacts of Date palm kernel extract (DPK) on these detrimental outcomes.

Methods: Thirty male Wistar rats were used in the investigation. They were split into six groups: one group received corn oil as a control; two groups received DPK at 200 mg/kg and 400 mg/kg; a group received FNP at 4.7 mg/kg; and two combination groups received DPK and FNP at 200 mg/kg and 400 mg/kg, respectively for 60 days.

Results: FNP caused oxidative stress, reduced sperm count, and impaired motility. FNP decreased the expression of the StAR gene and reduced serum testosterone levels. We assessed the histological alterations. In a dose-dependent way, the concurrent administration of DPK extract successfully decreased all the toxicological parameters.

Conclusions: When taken orally, DPK extract may protect against FNP-induced male reproductive toxicity.

背景:本研究的目的是研究暴露于甲氰菊酯(FNP)后大鼠模型生殖毒性的基本机制。此外,我们的研究探讨了椰枣仁提取物(DPK)对这些有害结果的新影响。方法:选用30只雄性Wistar大鼠进行调查。他们被分成六组:一组服用玉米油作为对照;两组分别给予DPK 200 mg/kg和400 mg/kg;1组给予FNP 4.7 mg/kg;2个联合组分别给予200 mg/kg和400 mg/kg的DPK和FNP,疗程60 d。结果:FNP引起氧化应激,精子数量减少,运动能力受损。FNP降低StAR基因表达,降低血清睾酮水平。我们评估组织学改变。在剂量依赖的方式下,同时给药的DPK提取物成功地降低了所有毒理学参数。结论:口服DPK提取物对fnp诱导的男性生殖毒性有一定的保护作用。
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引用次数: 0
NAMPT regulates mitochondria and oxidative stress level for mouse early embryo development. NAMPT调节线粒体和氧化应激水平对小鼠早期胚胎发育的影响。
IF 4.3 2区 生物学 Q1 BIOLOGY Pub Date : 2025-05-04 DOI: 10.1186/s40659-025-00608-3
Mei-Hua Liao, Xin Liu, Xiao-Ting Yu, Shun Zhang, You-Zhu Li, Lin-Lin Hu, Shao-Chen Sun, Jun-Li Wang

Background: Nicotinamide phosphoribosyltransferase (NAMPT) is an enzyme that involves into NMN-NAD + synthesis which involves into cellular metabolism related with aging, immune function, and neurodegeneration. However, its roles in early embryo development are still unclear.

Methods: In present study we disturbed the NAMPT activity and employed immunofluorescence staining and live cell imaging to explore its roles during early embryo development.

Results: We showed that NAMPT mRNA level was stable during mouse early embryo development, and NAMPT accumulated in the nucleus of blastomeres in mouse embryos. The loss of NAMPT activity disturbed the early cleavage from zygote to 2-cell, 4-cell to morula formation in the dose-dependent manner. We found that NAMPT inhibition disrupted mitochondria function in 2-cell embryos, showing decreased mitochondria number and aberrant accumulation in the blastomeres, which further disturb mitochondrial membrane potential level and elevated ROS level in embryos, indicating the occurrence of oxidative stress. Moreover, NAMPT inhibition also increased the apoptotic index, showing with increased Annexin-V signals and apoptotic gene expression.

Conclusions: Taken together, our study provided the evidence that NAMPT was essential for the mitochondria function to control oxidative stress and apoptosis during mouse early embryo development.

背景:烟酰胺磷酸核糖基转移酶(Nicotinamide phosphoribosyltransferase, NAMPT)是一种参与NMN-NAD +合成的酶,参与与衰老、免疫功能和神经退行性变性相关的细胞代谢。然而,其在早期胚胎发育中的作用尚不清楚。方法:采用免疫荧光染色和活细胞成像技术,对NAMPT活性进行干扰,探讨其在胚胎早期发育过程中的作用。结果:我们发现,在小鼠胚胎早期发育过程中,NAMPT mRNA水平是稳定的,并且NAMPT在小鼠胚胎卵裂球细胞核中积累。NAMPT活性的丧失以剂量依赖性的方式干扰了从受精卵到2细胞、4细胞到桑葚胚的早期分裂。我们发现,NAMPT抑制破坏了2细胞胚胎的线粒体功能,导致卵裂球中线粒体数量减少和异常积聚,进一步扰乱了胚胎线粒体膜电位水平,升高了ROS水平,表明发生了氧化应激。此外,NAMPT抑制还增加了凋亡指数,表现为Annexin-V信号和凋亡基因表达增加。综上所述,我们的研究提供了NAMPT在小鼠早期胚胎发育过程中线粒体功能控制氧化应激和细胞凋亡所必需的证据。
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引用次数: 0
Inhibition of CD45-specific phosphatase activity restores the differentiation potential of aged mesenchymal stromal cells: implications in regenerative medicine. 抑制cd45特异性磷酸酶活性恢复衰老间充质间质细胞的分化潜能:在再生医学中的意义
IF 4.3 2区 生物学 Q1 BIOLOGY Pub Date : 2025-05-02 DOI: 10.1186/s40659-025-00603-8
Madhurima Das, Isha Behere, Ganesh Ingavle, Anuradha Vaidya, Vaijayanti Prakash Kale

Background: Aging affects the reparative potency of mesenchymal stem/stromal cells (MSCs) by diminishing their proliferation and differentiation capability; making them unsuitable for regenerative purposes. Earlier we showed that MSCs acquire the expression of CD45 as a consequence of aging, and this increased expression is associated with downregulated expression of osteogenic markers and upregulated expression of adipogenic and osteoclastogenic markers. However, whether CD45 is actively involved in the aging-mediated deregulated differentiation in the MSCs was not elucidated.

Results: In the present study, we showed that pharmacological inhibition of CD45-specific phosphatase activity in the aged MSCs restores their differentiation potential to young-like. Investigation of the molecular mechanism involved in the process showed that several regulatory kinases like p38, p44/42, Src, and GSK3β are in their dephosphorylated form in the aged MSCs, and importantly, this status gets reversed by the application of a CD45-specific PTP inhibitor. Conversely, pharmacological inhibition of these kinases in young MSCs imposes an aged-like gene expression profile on them. Additionally, we also showed that the secretome of aged MSCs affects the viability and differentiation of primary chondrocytes, and this detrimental effect is reversed by treating aged MSCs with the PTP inhibitor. Our data demonstrate that the aging-mediated expression of CD45 in MSCs alters their differentiation profile by dephosphorylating several kinases and treating the aged MSCs with a CD45 PTP activity inhibitor rejuvenates them.

Conclusions: CD45 can be used as an aging marker for mesenchymal stem cells. Alteration of CD45 phosphatase activity could have significant implications for the use of MSCs in regenerative medicine.

背景:衰老通过降低间充质干细胞(MSCs)的增殖和分化能力来影响其修复能力;使它们不适合用于再生目的。早期我们发现MSCs随着年龄的增长而获得CD45的表达,并且这种表达的增加与成骨标志物的表达下调以及脂肪生成和破骨细胞标志物的表达上调有关。然而,CD45是否积极参与MSCs中衰老介导的去调控分化尚不清楚。结果:在本研究中,我们发现药物抑制衰老MSCs的cd45特异性磷酸酶活性可以恢复其向年轻样分化的潜力。对参与这一过程的分子机制的研究表明,p38、p44/42、Src和GSK3β等几种调节激酶在衰老的MSCs中处于去磷酸化形式,重要的是,这种状态通过应用cd45特异性PTP抑制剂得到逆转。相反,在年轻间充质干细胞中,这些激酶的药理学抑制会在它们身上施加类似衰老的基因表达谱。此外,我们还发现衰老MSCs的分泌组会影响原代软骨细胞的活力和分化,而用PTP抑制剂治疗衰老MSCs可以逆转这种不利影响。我们的数据表明,衰老介导的MSCs中CD45的表达通过去磷酸化几个激酶和用CD45 PTP活性抑制剂治疗衰老的MSCs使它们恢复活力来改变它们的分化谱。结论:CD45可作为间充质干细胞的衰老标志物。CD45磷酸酶活性的改变可能对MSCs在再生医学中的应用具有重要意义。
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引用次数: 0
Palmitoylation in focus: bridging reproductive biology and translational research. 棕榈酰化的焦点:连接生殖生物学和转化研究。
IF 4.3 2区 生物学 Q1 BIOLOGY Pub Date : 2025-04-28 DOI: 10.1186/s40659-025-00601-w
Suriyaraj Shanmugasundaram Prema, Deepankumar Shanmugamprema
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引用次数: 0
Cardiac endothelial cells and cardiomyocytes alter their communication properties in diabetic mice. 糖尿病小鼠心脏内皮细胞和心肌细胞改变其通讯特性。
IF 4.3 2区 生物学 Q1 BIOLOGY Pub Date : 2025-04-28 DOI: 10.1186/s40659-025-00602-9
Yan Wen, Qing Wang

Objective: We aimed to explore the heterogeneities and communication properties of cardiac CMs and ECs in diabetes.

Methods: GSE213337 dataset was retrieved from NCBI Gene Expression Omnibus, containing the single-cell RNA sequencing data of hearts from the control and streptozotocin-induced diabetic mice. Cell cluster analysis was performed to identify the cell atlas. Data of CMs and ECs were extracted individually for re-cluster analysis, functional enrichment analysis and trajectory analysis. Cell communication analysis was conducted to explore the altered signals and significant ligand-receptor interactions.

Results: Eleven cell types were identified in the heart tissue. CMs were re-clustered into four subclusters, and cluster 4 was dominant in diabetic condition and enriched in cellular energy metabolism processes. ECs were re-clustered into six subclusters, and clusters 2, 4 and 5 were dominant in the diabetic condition and mainly enriched in cellular energy metabolism and lipid transport processes. The cellular communication network was altered in the diabetic heart. ECs dominated the overall signaling and notably increased the ANGPTL and SEMA4 signals in the diabetic heart. Four significant ligand-receptor pairs implicating the two signals contributed to the communication between ECs and other cell types, including Angptl1-(Itga1 + Itgb1), Angptl4-Cdh5, Angptl4-Sdc3, and Sema4a-(Nrp + Plxna2). The ligand Angptl4 engaged in ECs-CMs communication in a paracrine manner.

Conclusion: Single-cell sequencing analysis revealed heterogeneities of ECs and CMs in diabetes, Angptl4-Cdh5 and Angptl4-Sdc3 were involved in the communication between ECs and CMs in diabetes.

目的:探讨糖尿病患者心脏CMs和ECs的异质性和通讯特性。方法:从NCBI Gene Expression Omnibus中检索GSE213337数据集,其中包含对照和链脲霉素诱导的糖尿病小鼠心脏单细胞RNA测序数据。细胞聚类分析鉴定细胞图谱。分别提取CMs和ec的数据进行重聚类分析、功能富集分析和轨迹分析。进行细胞通讯分析以探索改变的信号和显著的配体-受体相互作用。结果:在心脏组织中鉴定出11种细胞类型。CMs被重新聚为4个亚簇,其中簇4在糖尿病中占主导地位,并在细胞能量代谢过程中富集。ECs被重新聚为6个亚簇,其中簇2、4和5在糖尿病状态下占主导地位,主要富集于细胞能量代谢和脂质转运过程。糖尿病心脏的细胞通讯网络发生了改变。ECs主导了糖尿病心脏的整体信号,并显著增加了ANGPTL和SEMA4信号。包括Angptl1-(Itga1 + Itgb1)、Angptl4-Cdh5、angptl4 - sdh3和Sema4a-(Nrp + Plxna2)在内的四个重要的配体受体对参与了ECs与其他细胞类型之间的通信。配体Angptl4以旁分泌的方式参与ec - cms的通讯。结论:单细胞测序分析显示糖尿病ECs和CMs存在异质性,Angptl4-Cdh5和angptl4 - sdh3参与了糖尿病ECs和CMs之间的通讯。
{"title":"Cardiac endothelial cells and cardiomyocytes alter their communication properties in diabetic mice.","authors":"Yan Wen, Qing Wang","doi":"10.1186/s40659-025-00602-9","DOIUrl":"https://doi.org/10.1186/s40659-025-00602-9","url":null,"abstract":"<p><strong>Objective: </strong>We aimed to explore the heterogeneities and communication properties of cardiac CMs and ECs in diabetes.</p><p><strong>Methods: </strong>GSE213337 dataset was retrieved from NCBI Gene Expression Omnibus, containing the single-cell RNA sequencing data of hearts from the control and streptozotocin-induced diabetic mice. Cell cluster analysis was performed to identify the cell atlas. Data of CMs and ECs were extracted individually for re-cluster analysis, functional enrichment analysis and trajectory analysis. Cell communication analysis was conducted to explore the altered signals and significant ligand-receptor interactions.</p><p><strong>Results: </strong>Eleven cell types were identified in the heart tissue. CMs were re-clustered into four subclusters, and cluster 4 was dominant in diabetic condition and enriched in cellular energy metabolism processes. ECs were re-clustered into six subclusters, and clusters 2, 4 and 5 were dominant in the diabetic condition and mainly enriched in cellular energy metabolism and lipid transport processes. The cellular communication network was altered in the diabetic heart. ECs dominated the overall signaling and notably increased the ANGPTL and SEMA4 signals in the diabetic heart. Four significant ligand-receptor pairs implicating the two signals contributed to the communication between ECs and other cell types, including Angptl1-(Itga1 + Itgb1), Angptl4-Cdh5, Angptl4-Sdc3, and Sema4a-(Nrp + Plxna2). The ligand Angptl4 engaged in ECs-CMs communication in a paracrine manner.</p><p><strong>Conclusion: </strong>Single-cell sequencing analysis revealed heterogeneities of ECs and CMs in diabetes, Angptl4-Cdh5 and Angptl4-Sdc3 were involved in the communication between ECs and CMs in diabetes.</p>","PeriodicalId":9084,"journal":{"name":"Biological Research","volume":"58 1","pages":"23"},"PeriodicalIF":4.3,"publicationDate":"2025-04-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12036212/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143963651","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Olfactory dysfunction and altered cortical excitability in the mouse model of Fragile X Syndrome. 脆性X综合征小鼠模型的嗅觉功能障碍和皮质兴奋性改变。
IF 4.3 2区 生物学 Q1 BIOLOGY Pub Date : 2025-04-24 DOI: 10.1186/s40659-024-00582-2
Felipe Arancibia, Marcelo Rojas, Diego Becerra, Rocío Fuenzalida, Christian Cea-Del Rio, Jorge Mpodozis, Magdalena Sanhueza, Alexia Nunez-Parra

Fragile X Syndrome (FXS) is the most common monogenetic cause of autism and inherited intellectual disability. A key feature of FXS symptomatology is altered sensory processing greatly affecting FXS individual's life quality. Here, we use a combination of behavioral tests and slice physiology tools to study the neurophysiological alterations underlying aberrant sensory processing in the olfactory system of the FXS mouse model (Fmr1 KO). We focused on the piriform cortex (PC), since it is in this brain region where olfactory information is integrated and ultimately decoded. Using a go-no go behavioral task we have found that Fmr1 KO learn to discriminate between a rewarded and a not rewarded odorant but cannot distinguish complex odor mixtures, akin to what is found in the environment. Moreover, Fmr1 KO long-term memory is impaired compared to control mice suggesting possibly cortical processing alterations. In addition, electrophysiological data from PC layer II neurons of Fmr1 KO mice showed a hyperexcitable phenotype manifested by differences in active membrane properties and altered network connectivity. Taken together, our data suggest a possible causal link between the observed olfactory discrimination deficiencies in the Fmr1 KO mouse and the altered physiology of PC.

脆性X染色体综合征(FXS)是自闭症和遗传性智力残疾最常见的单基因原因。FXS症状学的一个关键特征是感觉加工的改变极大地影响了FXS个体的生活质量。本研究采用行为测试和切片生理学相结合的方法,研究FXS小鼠模型(Fmr1 KO)嗅觉系统异常感觉加工的神经生理变化。我们把重点放在梨状皮质(PC)上,因为它是嗅觉信息被整合并最终解码的大脑区域。我们发现Fmr1 KO学会了区分有奖励和没有奖励的气味,但不能区分复杂的气味混合物,类似于在环境中发现的气味。此外,与对照小鼠相比,Fmr1 KO长期记忆受损,这可能表明皮质加工发生了改变。此外,来自Fmr1 KO小鼠的PC层II神经元的电生理数据显示出过度兴奋的表型,表现为活性膜性质的差异和网络连接的改变。综上所述,我们的数据表明,在Fmr1 KO小鼠中观察到的嗅觉辨别缺陷与PC生理改变之间可能存在因果关系。
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引用次数: 0
Chaperone-assisted E3 ligase-engineered mesenchymal stem cells target hyperglycemia-induced p53 for ubiquitination and proteasomal degradation ameliorates self-renewal. 伴侣辅助E3连接酶工程间充质干细胞靶向高血糖诱导的p53泛素化和蛋白酶体降解改善自我更新。
IF 4.3 2区 生物学 Q1 BIOLOGY Pub Date : 2025-04-24 DOI: 10.1186/s40659-025-00604-7
Ayaz Ali, Wei-Wen Kuo, Chia-Hua Kuo, Jeng-Feng Lo, Dennis Jine-Yuan Hsieh, Peiying Pai, Tsung-Jung Ho, Marthandam Asokan Shibu, Shinn-Zong Lin, Chih-Yang Huang

Background: Stem cell therapies may potentially be used in regenerative and reconstructive medicine due to their ability for self-renewal and differentiation. Stressful conditions, such as hyperglycemia, adversely affect stem cell functions, impairing their function and promoting differentiation by opposing self-renewal. The carboxyl terminus of HSP70 interacting protein (CHIP), which is a cochaperone and E3 ligase, maintains protein homeostasis and performs quality control of the cell via ubiquitylation. However, the role of CHIP in regulating stemness remains unknown.

Results: Hyperglycemia downregulated CHIP-induced p53, arrested the cell cycle at the gap (G1) phase, and promoted the loss of stemness in WJMSCs. Quantitative real-time polymerase chain reaction (qRT-PCR), Western blotting, immunofluorescence, and cell cycle analysis showed that CHIP-overexpressing WJMSCs downregulated the expression of phosphorylated p53 and shortened its half-life while enhancing self-renewal factors. Additionally, co-IP and Western blotting revealed that CHIP promoted the ubiquitination and proteasomal degradation of hyperglycemia-induced p53 through the chaperone system.

Conclusions: CHIP may promote ubiquitin-mediated proteasomal degradation of hyperglycemia-induced p53 rescues self-renewal genes, which can maintain the long-term undifferentiated state of WJMSCs. CHIP may be an alternative therapeutic option in regenerative medicine for hyperglycemic-related complications in diabetes.

背景:由于干细胞具有自我更新和分化的能力,干细胞疗法可能潜在地用于再生和重建医学。应激条件,如高血糖,会对干细胞功能产生不利影响,损害其功能,并通过反对自我更新来促进分化。HSP70相互作用蛋白(CHIP)的羧基端是一种协同伴侣和E3连接酶,通过泛素化维持蛋白稳态并对细胞进行质量控制。然而,CHIP在调节干性中的作用尚不清楚。结果:高血糖可下调chip诱导的p53,使细胞周期阻滞在间隙期(G1),促进WJMSCs的干性丧失。定量实时聚合酶链反应(qRT-PCR)、Western blotting、免疫荧光和细胞周期分析显示,chip过表达的WJMSCs下调了磷酸化p53的表达,缩短了其半衰期,同时增强了自我更新因子。此外,co-IP和Western blotting显示CHIP通过伴侣系统促进高血糖诱导的p53的泛素化和蛋白酶体降解。结论:CHIP可促进高血糖诱导的p53拯救自我更新基因的泛素介导的蛋白酶体降解,维持WJMSCs的长期未分化状态。CHIP可能是再生医学治疗糖尿病高血糖相关并发症的替代治疗选择。
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引用次数: 0
Uncovering leading compounds for alzheimer's disease treatment: mendelian randomization and virtual screening insights into plasma protein modulation. 发现治疗阿尔茨海默病的主要化合物:泯灭随机化和虚拟筛选对血浆蛋白调节的启示。
IF 4.3 2区 生物学 Q1 BIOLOGY Pub Date : 2025-04-05 DOI: 10.1186/s40659-025-00598-2
Xiaohan Sun, Xiaofei Hu, Jianming Wei, Haoyu An

Alzheimer's disease (AD) is a neurodegenerative disorder influenced by both genetic and environmental factors. Identifying therapeutic targets and interventions remains challenging. This study utilized Mendelian Randomization (MR) to investigate causal relationships between plasma proteins, lifestyle factors, and AD, along with virtual screening to identify potential drug compounds. A two-sample MR analysis assessed associations between plasma proteins, identified through genome-wide association studies (GWAS), and AD risk. Co-localization analysis (CA) confirmed the overlap between protein expression and AD susceptibility loci, and reverse MR ruled out reverse causality. A protein-protein interaction (PPI) network was constructed to explore therapeutic targets, followed by virtual screening to identify small-molecule inhibitors for selected proteins. The analysis found significant associations between eight plasma proteins and AD, with five proteins (GSTP1, BIN1, Siglec-3, SERPINF2, and GRN) showing strong evidence of involvement in AD pathogenesis. Virtual screening identified six compounds as potential inhibitors of GSTP1 and four compounds as potential inhibitors of BIN1. Furthermore, MR analysis of lifestyle factors, such as dietary behaviors and smoking cessation, indicated they may influence AD risk through their effects on specific proteins. These findings offer novel insights into the genetic mechanisms underlying AD and highlight the potential of combining MR with virtual screening to identify therapeutic targets. The study also suggests that lifestyle modifications could offer alternative prevention and treatment strategies for AD. Future research should focus on the experimental validation of the identified compounds and further explore the mechanisms linking lifestyle factors to AD.

阿尔茨海默病(AD)是一种受遗传和环境因素影响的神经退行性疾病。确定治疗目标和干预措施仍然具有挑战性。本研究利用孟德尔随机化(MR)技术研究血浆蛋白、生活方式因素和阿尔茨海默病之间的因果关系,并通过虚拟筛选确定潜在的药物化合物。双样本MR分析评估了通过全基因组关联研究(GWAS)确定的血浆蛋白与AD风险之间的关联。共定位分析(CA)证实了蛋白质表达与AD易感基因位点之间的重叠,反向MR则排除了反向因果关系。研究人员构建了一个蛋白质-蛋白质相互作用(PPI)网络来探索治疗靶点,随后进行了虚拟筛选以确定选定蛋白质的小分子抑制剂。分析发现,八种血浆蛋白与注意力缺失症之间存在重大关联,其中五种蛋白(GSTP1、BIN1、Siglec-3、SERPINF2 和 GRN)显示出参与注意力缺失症发病机制的有力证据。虚拟筛选确定了六种化合物为 GSTP1 的潜在抑制剂,四种化合物为 BIN1 的潜在抑制剂。此外,对饮食行为和戒烟等生活方式因素的磁共振分析表明,这些因素可能会通过对特定蛋白质的影响来影响注意力缺失症的风险。这些研究结果为了解注意力缺失症的遗传机制提供了新的视角,并凸显了将磁共振分析与虚拟筛选相结合以确定治疗靶点的潜力。该研究还表明,改变生活方式可以为艾滋病的预防和治疗提供替代策略。未来的研究应重点关注已鉴定化合物的实验验证,并进一步探索生活方式因素与注意力缺失症的关联机制。
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引用次数: 0
Functional characterization of two KCND3 variants associated with SCA 19/22 ataxia in Latin American families. 拉丁美洲家庭中与SCA 19/22共济失调相关的两个KCND3变异的功能特征
IF 4.3 2区 生物学 Q1 BIOLOGY Pub Date : 2025-03-26 DOI: 10.1186/s40659-025-00589-3
Felipe Arancibia, Fernanda Martin, Jenny Ruiz-Fuentes, Erbio Diaz, Tamara Hermosilla, Wendy Gonzalez, Felipe Simon, Diana Avila-Jaque, Mariana Luna-Álvarez, David José Dávila Ortiz de Montellano, Marcelo Miranda, M Leonor Bustamante, Diego Varela

Background: Spinocerebellar ataxia 19/22 (SCA19/22) represents a rare autosomal dominant genetic disorder resulting in progressive ataxia and cerebellar atrophy. SCA19/22 is caused by variants in the KCND3 gene, which encodes a voltage-gated potassium channel subunit essential for cerebellar Purkinje cell function. To date, 22 variants have been reported worldwide, with incomplete functional studies.

Results: We present four Chilean and Mexican cases in whom two single-nucleotide variants were identified through whole-exome sequencing of the probands. One variant (G371R) was initially cataloged as pathogenic and the other (S357W) as likely pathogenic according to the American College of Medical Genetics and Genomics criteria. The pathogenicity of the G371R variation was confirmed by in-silico mutagenesis. Our molecular models, that include electrostatic potential analysis and algorithms to analyze the pore dimensions (HOLE), indicated that the longer side chain of the arginine narrowed the channel's selectivity filter, while the positive charge modified its surface electrostatic potential, presumably preventing potassium flux. Functional characterization of the S357W variant was performed in AD293 cells. When overexpressed, KV4.3S357W channels alone showed no current. Protein electrophoresis revealed that the total number of KV4.3 channels expressed did not differ between the wild-type and mutated phenotypes, suggesting a protein trafficking malfunction. Co-expression of the KChIP2 auxiliary subunit partially rescued the potassium currents when the variant was expressed, albeit with very different biophysical characteristics, including faster inactivation vs. wild-type channels.

Conclusions: This functional characterization of two KCND3 variants associated with SCA19/22 adds new evidence for the pathogenic role of Kv4.3 loss-of-function mutations and establishes a correlation between functional dominance and clinical severity in SCA19/22.

背景:脊髓小脑性共济失调19/22 (SCA19/22)是一种罕见的常染色体显性遗传疾病,导致进行性共济失调和小脑萎缩。SCA19/22是由KCND3基因变异引起的,该基因编码电压门控钾通道亚基,对小脑浦肯野细胞功能至关重要。迄今为止,全世界已报道了22种变异,但功能研究不完整。结果:我们提出了四个智利和墨西哥的病例,其中两个单核苷酸变体通过先证者的全外显子组测序被鉴定出来。根据美国医学遗传学和基因组学学院的标准,一种变异(G371R)最初被归类为致病性,另一种(S357W)被归类为可能致病性。G371R变异的致病性通过硅诱变得到证实。我们的分子模型,包括静电电位分析和孔尺寸(HOLE)分析算法,表明精氨酸较长的侧链缩小了通道的选择性过滤器,而正电荷修饰了其表面静电电位,可能阻止了钾通量。在AD293细胞中对S357W变异体进行功能表征。当过表达时,单独KV4.3S357W通道无电流显示。蛋白质电泳显示,KV4.3通道的表达总数在野生型和突变表型之间没有差异,这表明蛋白质运输出现故障。KChIP2辅助亚基的共表达在表达变体时部分挽救了钾电流,尽管具有非常不同的生物物理特性,包括与野生型通道相比更快的失活。结论:与SCA19/22相关的两种KCND3变异的功能特征为Kv4.3功能丧失突变的致病作用提供了新的证据,并在SCA19/22中建立了功能优势与临床严重程度之间的相关性。
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