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Study of glutathione S-transferase (CqGSTs) gene expression patterns, the response of basic helix–loop–helix (bHLH) transcription factor and genome-wide identification gene family in quinoa (Chenopodium quinoa Willd.) and its mechanisms of salt stress tolerance 藜(Chenopodium quinoa Willd.)谷胱甘肽 S-转移酶(CqGSTs)基因表达模式、碱性螺旋环螺旋(bHLH)转录因子的响应和全基因组鉴定基因家族及其耐盐胁迫机制研究
IF 1.6 4区 生物学 Q3 PLANT SCIENCES Pub Date : 2023-12-24 DOI: 10.1007/s40415-023-00968-8
Kaiyuan Cui, Hafeez Noor, Fida Noor, Pengcheng Ding, Min Sun, Zhiqiang Gao
<p>Quinoa grains are nutritionally rich and balanced, rich in protein, starch, VB1, folic acid, minerals (Ca, Zn, Fe) and other nutrients and grow at high altitude (> 3500 m above sea level) all year round; it is subjected to drought, low temperature, salt and other abiotic stresses during its growth and development; basic helix–loop–helix (<i>bHLH</i>) family is the second largest gene family in plants and is involved in many biological processes such as plant growth, development, metabolism and resistance to abiotic stress. In bioinformatics and expression analysis of glutathione <i>S</i>-transferase (<i>GST</i>) gene in quinoa in this study, 114 <i>CqGST</i> genes were identified from the whole genome of quinoa by bioinformatics methods. The phylogenetic tree showed that 114 <i>CqGST</i> genes were divided into seven subgroups. Phylogenetic analysis of these genes suggested that tandem and fragment replication events played a key role in the expansion of the <i>CqGSTs</i> gene family, and the <i>CqGST</i> genes may have undergone strong purification selection during the evolution process. Analysis of salt-treated transcriptome from the roots of salt-tolerant and salt-sensitive quinoa cultivars showed that salt treatment induced changes in the expression levels of <i>CqGSTs</i> genes. By comparing the sequences of the <i>bHLH</i> gene family members of Arabidopsis thaliana and the <i>bHLH</i> transcription factor family members Quinoa most of the <i>bHLH</i> transcription factors of quinoa have high homology with that of Arabidopsis thaliana. The number of exons contained in <i>CqGST</i> gene ranged from 1 to 14, among which <i>CqGSTL2</i> contained 14 exons, indicating that <i>CqGSTL2</i> contained 14 exons, the gene with the highest number of exons, respectively. The number of exons in six <i>CqGSTZ</i> members was significantly different, including three members have two exons and three have nine exons. Studies on chromosome distribution are that except for no <i>CqGST</i> gene on chromosome 09, all the other chromosomes were identical; there was <i>CqGST</i> gene distribution, and chromosome 07 contains 20 <i>CqGST</i> genes, which was one of <i>CqGST</i> gene distribution. C<i>qGSTL1</i> and <i>CqGSTU1</i> cannot locate specific chromosomes due to the quality of the genome. In order to explore the expression pattern of GST gene, different tissues or RNA-seq data of Quinoa from various developmental stages of organs were systematically analyzed. In class U, <i>CqGSTU22</i>, <i>CqGSTU67</i>, <i>CqGSTU43,</i> CqGSTU42, <i>CqGSTU15</i>, in class L, <i>CqGSTL1</i> and CqGSTL5, in class Z, <i>CqGSTZ5</i>, DHAR class <i>CqDHAR2</i> and <i>CqDHAR3</i> were strongly expressed in various varieties tissues and organs. The <i>CqGST</i>, U66, <i>CqGSTF20</i> and <i>CqGSTF23</i> were not expressed in the 11 tissues or organs tested. Related to the temporal and spatial expression patterns of these genes, there were multiple genes in each type in the s
藜麦营养丰富均衡,富含蛋白质、淀粉、VB1、叶酸、矿物质(钙、锌、铁)等营养成分,常年生长在高海拔地区(海拔 3500 米),在生长发育过程中会受到干旱、低温、盐分等非生物胁迫;基本螺旋-环-螺旋(bHLH)家族是植物中第二大基因家族,参与植物生长、发育、新陈代谢和抵抗非生物胁迫等许多生物过程。本研究对藜麦中的谷胱甘肽 S-转移酶(GST)基因进行了生物信息学和表达分析,通过生物信息学方法从藜麦全基因组中鉴定出 114 个 CqGST 基因。系统发生树显示,114 个 CqGST 基因分为 7 个亚群。这些基因的系统进化分析表明,串联复制和片段复制事件在 CqGSTs 基因家族的扩展过程中起了关键作用,CqGST 基因在进化过程中可能经历了强烈的纯化选择。对耐盐和盐敏感藜麦品种根部盐处理转录组的分析表明,盐处理诱导了CqGSTs基因表达水平的变化。通过比较拟南芥 bHLH 基因家族成员和藜麦 bHLH 转录因子家族成员的序列,发现藜麦的大部分 bHLH 转录因子与拟南芥的 bHLH 转录因子具有很高的同源性。CqGST基因所含外显子数从1到14不等,其中CqGSTL2含有14个外显子,表明CqGSTL2含有14个外显子,分别是外显子数最多的基因。6 个 CqGSTZ 成员的外显子数目有显著差异,其中 3 个成员有 2 个外显子,3 个成员有 9 个外显子。对染色体分布的研究表明,除 09 号染色体上没有 CqGST 基因外,其他染色体均相同;有 CqGST 基因分布,07 号染色体上有 20 个 CqGST 基因,是 CqGST 基因分布之一。由于基因组的质量问题,CqGSTL1 和 CqGSTU1 无法找到特定的染色体。为了探索 GST 基因的表达模式,系统分析了藜麦不同组织或器官不同发育阶段的 RNA-seq 数据。在 U 类中,CqGSTU22、CqGSTU67、CqGSTU43、CqGSTU42、CqGSTU15,在 L 类中,CqGSTL1 和 CqGSTL5,在 Z 类中,CqGSTZ5,DHAR 类中的 CqDHAR2 和 CqDHAR3 在不同品种的组织和器官中均有强表达。CqGST、U66、CqGSTF20 和 CqGSTF23 在测试的 11 个组织或器官中没有表达。与这些基因的时空表达模式有关的是,每种类型都有多个基因在幼苗中高表达,如 CqGSTL4、CqGSTL6 等。
{"title":"Study of glutathione S-transferase (CqGSTs) gene expression patterns, the response of basic helix–loop–helix (bHLH) transcription factor and genome-wide identification gene family in quinoa (Chenopodium quinoa Willd.) and its mechanisms of salt stress tolerance","authors":"Kaiyuan Cui, Hafeez Noor, Fida Noor, Pengcheng Ding, Min Sun, Zhiqiang Gao","doi":"10.1007/s40415-023-00968-8","DOIUrl":"https://doi.org/10.1007/s40415-023-00968-8","url":null,"abstract":"&lt;p&gt;Quinoa grains are nutritionally rich and balanced, rich in protein, starch, VB1, folic acid, minerals (Ca, Zn, Fe) and other nutrients and grow at high altitude (&gt; 3500 m above sea level) all year round; it is subjected to drought, low temperature, salt and other abiotic stresses during its growth and development; basic helix–loop–helix (&lt;i&gt;bHLH&lt;/i&gt;) family is the second largest gene family in plants and is involved in many biological processes such as plant growth, development, metabolism and resistance to abiotic stress. In bioinformatics and expression analysis of glutathione &lt;i&gt;S&lt;/i&gt;-transferase (&lt;i&gt;GST&lt;/i&gt;) gene in quinoa in this study, 114 &lt;i&gt;CqGST&lt;/i&gt; genes were identified from the whole genome of quinoa by bioinformatics methods. The phylogenetic tree showed that 114 &lt;i&gt;CqGST&lt;/i&gt; genes were divided into seven subgroups. Phylogenetic analysis of these genes suggested that tandem and fragment replication events played a key role in the expansion of the &lt;i&gt;CqGSTs&lt;/i&gt; gene family, and the &lt;i&gt;CqGST&lt;/i&gt; genes may have undergone strong purification selection during the evolution process. Analysis of salt-treated transcriptome from the roots of salt-tolerant and salt-sensitive quinoa cultivars showed that salt treatment induced changes in the expression levels of &lt;i&gt;CqGSTs&lt;/i&gt; genes. By comparing the sequences of the &lt;i&gt;bHLH&lt;/i&gt; gene family members of Arabidopsis thaliana and the &lt;i&gt;bHLH&lt;/i&gt; transcription factor family members Quinoa most of the &lt;i&gt;bHLH&lt;/i&gt; transcription factors of quinoa have high homology with that of Arabidopsis thaliana. The number of exons contained in &lt;i&gt;CqGST&lt;/i&gt; gene ranged from 1 to 14, among which &lt;i&gt;CqGSTL2&lt;/i&gt; contained 14 exons, indicating that &lt;i&gt;CqGSTL2&lt;/i&gt; contained 14 exons, the gene with the highest number of exons, respectively. The number of exons in six &lt;i&gt;CqGSTZ&lt;/i&gt; members was significantly different, including three members have two exons and three have nine exons. Studies on chromosome distribution are that except for no &lt;i&gt;CqGST&lt;/i&gt; gene on chromosome 09, all the other chromosomes were identical; there was &lt;i&gt;CqGST&lt;/i&gt; gene distribution, and chromosome 07 contains 20 &lt;i&gt;CqGST&lt;/i&gt; genes, which was one of &lt;i&gt;CqGST&lt;/i&gt; gene distribution. C&lt;i&gt;qGSTL1&lt;/i&gt; and &lt;i&gt;CqGSTU1&lt;/i&gt; cannot locate specific chromosomes due to the quality of the genome. In order to explore the expression pattern of GST gene, different tissues or RNA-seq data of Quinoa from various developmental stages of organs were systematically analyzed. In class U, &lt;i&gt;CqGSTU22&lt;/i&gt;, &lt;i&gt;CqGSTU67&lt;/i&gt;, &lt;i&gt;CqGSTU43,&lt;/i&gt; CqGSTU42, &lt;i&gt;CqGSTU15&lt;/i&gt;, in class L, &lt;i&gt;CqGSTL1&lt;/i&gt; and CqGSTL5, in class Z, &lt;i&gt;CqGSTZ5&lt;/i&gt;, DHAR class &lt;i&gt;CqDHAR2&lt;/i&gt; and &lt;i&gt;CqDHAR3&lt;/i&gt; were strongly expressed in various varieties tissues and organs. The &lt;i&gt;CqGST&lt;/i&gt;, U66, &lt;i&gt;CqGSTF20&lt;/i&gt; and &lt;i&gt;CqGSTF23&lt;/i&gt; were not expressed in the 11 tissues or organs tested. Related to the temporal and spatial expression patterns of these genes, there were multiple genes in each type in the s","PeriodicalId":9140,"journal":{"name":"Brazilian Journal of Botany","volume":"20 1","pages":""},"PeriodicalIF":1.6,"publicationDate":"2023-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139035362","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Physiological and biochemical alterations driven by light quality during germination and initial growth of the mandacaru cactus (Cereus jamacaru DC.) 曼达卡鲁仙人掌(Cereus jamacaru DC.)
IF 1.6 4区 生物学 Q3 PLANT SCIENCES Pub Date : 2023-12-24 DOI: 10.1007/s40415-023-00972-y
Cleice Fátima G. Alves, L. Felipe Daibes, Felipe dos Santos Barbosa, Flávia B. P. Moura, José Vieira Silva

Germination of many cacti across the Americas is light-dependent, but less has been explored regarding biochemical and morphophysiological alterations during germination and initial growth under different light spectra. Red and blue wavelengths, for instance, are predominantly absorbed by photosynthetic pigments, regulating plant growth. This study aimed to characterize physiological, anatomical and biochemical features of the mandacaru cactus (Cereus jamacaru DC.), an overexploited cactus crop from the Brazilian Caatinga, during germination and initial growth under white, red, and blue lights. Germination was tested under the three light treatments; the emerged seedlings were then cultivated under the same conditions. Seedling height and diameter were registered at 45, 60, 75, and 90 days after sowing. Photosynthetic pigments and total soluble sugars were quantified over time; anatomical analyses of the cladodes were also performed. White and red lights promoted the highest germination percentages (98–97%), with a decrease in the blue light (56%). Seedling height increased under the red light (35–36 mm) compared to the other treatments. Blue light tended to promote greater contents of chlorophylls and carotenoids. Total soluble sugars were greater in the blue light until 60 days, but equal among treatments at 75 and 90 days. Calcium oxalate crystals and amyloplasts were observed at 45 days in all treatments. This study shows contrasting physiological responses between light quality treatments, mostly related to the higher energy dissipation required under the blue wavelength. Future research should investigate seedling biomass production and relative growth rates, including comparisons with other populations of the mandacaru cactus.

美洲许多仙人掌植物的发芽都依赖于光照,但对于不同光谱条件下发芽和初期生长过程中的生化和形态生理变化,研究较少。例如,红色和蓝色波长主要被光合色素吸收,从而调节植物的生长。本研究旨在描述巴西卡廷加地区被过度开发的仙人掌作物曼达卡鲁仙人掌(Cereus jamacaru DC.)在白光、红光和蓝光下发芽和初始生长期间的生理、解剖和生化特征。在三种光照条件下测试发芽情况;然后在相同条件下培育出苗。在播种后 45、60、75 和 90 天分别记录了幼苗的高度和直径。光合色素和可溶性糖总量随时间变化进行了定量分析;还对叶柄进行了解剖分析。白光和红光的发芽率最高(98%-97%),蓝光的发芽率最低(56%)。与其他处理相比,红光下的苗高有所增加(35-36 毫米)。蓝光往往能提高叶绿素和类胡萝卜素的含量。在 60 天前,蓝光下的总可溶性糖含量更高,但在 75 天和 90 天时,各处理的总可溶性糖含量相同。所有处理在 45 天时都能观察到草酸钙晶体和淀粉体。这项研究表明,不同光质处理的生理反应截然不同,这主要与蓝光波长下所需的较高能量耗散有关。未来的研究应调查幼苗生物量的产生和相对生长率,包括与曼达卡鲁仙人掌其他种群的比较。
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引用次数: 0
Influence of incompatible pollen grains on the reproductive success of Ipomoea asarifolia (Desr.) Roem. & Schult. (Convolvulaceae) in Restinga, RN, Brazil 不相容花粉粒对巴西雷斯廷加(RN)锥栗科植物 Ipomoea asarifolia (Desr.) Roem.
IF 1.6 4区 生物学 Q3 PLANT SCIENCES Pub Date : 2023-12-14 DOI: 10.1007/s40415-023-00965-x
Bruna Yvila Melo Santos, Karine de Matos Costa, Natan Messias de Almeida, Maria Teresa Buril, André Maurício Melo Santos, Ana Virgínia Leite

The deposition of incompatible pollen grains in the stigma can interfere with the performance of compatible pollen grains and compromise the reproductive success of the species in the community. Ipomoea asarifolia, a self-incompatible species, occurs in sympathy with I. brasiliana, sharing pollinators, but without hybrid formation. However, this condition favors the deposition of auto pollen and interspecific pollen in the stigma, which can compromise the reproductive success of the species in the community. Given this, we investigated the influence of incompatible intra- and interspecific pollen grains on their reproductive success of I. asarifolia, based on analyses of natural pollination and controlled experiments. Our hypothesis is that the presence of incompatible pollen grains in the stigma negatively interferes with the formation of fruits and seeds in I. asarifolia. Fruit yield was significantly higher in manual cross-pollination than in natural pollination and mixed pollination experiments of compatible (intraspecific: cross-pollinated pollen) and incompatible (intraspecific: self-pollen and interspecific: pollen of I. brasiliana) pollens. Seed yield was significantly higher in cross-pollination than between the two mixed pollination experiments. Seed production was not significantly different between cross-pollination and natural pollination, nor between natural pollination and mixed pollination experiments. However, fruit and seed production was higher in cross-pollination than in other situations. And experiments with incompatible amounts of pollens do not form fruits. Few fruits and seeds are formed in the presence of incompatible pollens (intra and interspecific), which may be interfering with reproductive success in I. asarifolia, especially in the long term. We reinforce the importance of the selection of reproductive displacement in the species to minimize the flow of incompatible pollens and their reproductive interferences.

不亲和性花粉粒在柱头中的沉积会干扰亲和性花粉粒的表现,从而影响该物种在群落中的繁殖成功。一种自交不亲和种,与巴西利亚同属,共享传粉媒介,但不形成杂种。然而,这种情况有利于柱头内自花粉和种间花粉的沉积,从而影响该物种在群落中的繁殖成功率。基于此,本文在自然授粉和对照试验的基础上,研究了种内和种间不亲和性花粉粒对细丝花生殖成功率的影响。我们的假设是,在柱头中存在不相容的花粉粒,不利于细丝叶果实和种子的形成。人工异花授粉的果实产量显著高于自然授粉和亲和性(种内异花授粉)和不亲和性(种内自交花粉和种间花粉)的混合授粉实验。异花授粉的种子产量显著高于两种混合授粉。异花授粉与自然授粉之间、自然授粉与混合授粉之间的种子产量差异不显著。然而,异花授粉的果实和种子产量高于其他情况。在实验中,不相容数量的花粉不会形成果实。在不相容的花粉(种内和种间)存在的情况下,很少有果实和种子形成,这可能会干扰asarifolia的繁殖成功,特别是从长远来看。我们强调了在物种中选择生殖位移的重要性,以尽量减少不相容花粉的流动及其对生殖的干扰。
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引用次数: 0
Overexpression of S-adenosylmethionine synthetase gene enhances polyamine content and antioxidant activity in transgenic plants s -腺苷甲硫氨酸合成酶基因的过表达提高了转基因植株的多胺含量和抗氧化活性
IF 1.6 4区 生物学 Q3 PLANT SCIENCES Pub Date : 2023-12-06 DOI: 10.1007/s40415-023-00966-w
Hye Lim Choi, Ji Won Seo, Mi Ran Jeon, Jae Geun Lee, Ji Hye Yoo, Chang Yeon Yu, Eun Soo Seong

The interaction between polyamine content and antioxidant activity in plants can confer resistance to environmental stress. In this study, polyamines and antioxidant activities in T2-generation transgenic plants overexpressing the MsSAMS (Miscanthus sinensis S-adenosylmethionine synthetase) gene were studied. First, the results of plant length, leaf length, leaf width, leaf number, stem diameter, and chlorophyll content in the T2-generation transgenic plants into which the MsSAMS gene was inserted showed that there were only slight differences in the agricultural phenotype, and no significant difference was observed. Result of the analyses of polyamine-based components: putrescine, spermidine, and spermine showed that there was no detectable amount of putrescine in the control group, whereas in the T6 line, it was 399.14 ± 15.46 μg/g FW. Spermidine level was 1497.16 ± 53.28 μg/g FW and 146.97 ± 12.58 μg/g FW in the T17 and T9 lines of transgenic plants, respectively. Furthermore, free radical scavenging activity was measured using DPPH (2,2-diphenyl-1-picrylhydrazyl) and ABTS [2,2′-azino-bis(3-ethylbenz-thiazoline-6-sulfonic acid)] assays. T17 line showed the highest antioxidant activity (1974.85 ± 18.06 μg/mL) in DPPH assay, whereas T6 line showed the highest activity (7390.12 ± 67.39 μg/mL) in ABTS assay. Results of the analysis of the total phenol and flavonoid content of the transgenic plants revealed that the T6 line and T2 line showed the highest values, respectively (208.20 ± 3.36 mg GAE/g and 22.07 ± 0.49 mg QE/g, respectively). These results suggest that the MsSAMS gene plays a role in enhancing antioxidant activity by increasing polyamine content.

多胺含量与植物抗氧化活性之间的相互作用可以使植物抵抗环境胁迫。本研究对过表达Miscanthus sinensis s -腺苷甲硫氨酸合成酶(MsSAMS)基因的t2代转基因植株的多胺和抗氧化活性进行了研究。首先,插入MsSAMS基因的t2代转基因植株的株长、叶长、叶宽、叶数、茎粗和叶绿素含量的结果显示,在农业表型上只有微小的差异,没有观察到显著差异。对多胺类成分腐胺、亚精胺、精胺的分析结果显示,对照组中未检出腐胺,而T6系中腐胺含量为399.14±15.46 μg/g FW。转基因植株T17系和T9系亚精胺含量分别为1497.16±53.28 μg/g FW和146.97±12.58 μg/g FW。此外,采用DPPH(2,2-二苯基-1-picrylhydrazyl)和ABTS [2,2 ' - azno -bis(3-乙基苯-噻唑-6-磺酸)]测定自由基清除活性。T17系DPPH抗氧化活性最高(1974.85±18.06 μg/mL), T6系ABTS抗氧化活性最高(7390.12±67.39 μg/mL)。结果显示,T6系和T2系的总酚和总黄酮含量最高,分别为208.20±3.36 mg GAE/g和22.07±0.49 mg QE/g。这些结果表明,MsSAMS基因通过增加多胺含量来增强抗氧化活性。
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引用次数: 0
Systematic identification and evolutionary analysis of cytochrome P450 genes in Platanus acerifolia induced by Corythucha ciliata damage 纤毛桃损伤诱导的尖叶扁桃细胞色素P450基因的系统鉴定和进化分析
IF 1.6 4区 生物学 Q3 PLANT SCIENCES Pub Date : 2023-11-30 DOI: 10.1007/s40415-023-00959-9
Chunyan Wu, Abudurusuli tusun, Youssef Dewer, Fengqi Li

The sycamore lace bug Corythucha ciliata (say) is the most important pest attacked the London planetree Platanus acerifolia worldwide. We propose that plant cytochrome P450s (CYP450s) are important and play key roles in P. acerifolia and C. ciliata interactions. Therefore, the identification of transcriptionally active CYP450 genes is considered essential for revealing the mechanisms involved in their interactions. So far, the CYP450 genes of P. acerifolia have not yet been reported. In this study, we identified and characterized 96 CYP450 genes in P. acerifolia. These genes were categorized into 8 clans, 41 families, and 60 subfamilies. Notably, 48 genes demonstrated a strong negative selection when compared with the CYP450 genes of Arabidopsis thaliana. The results of post-feeding induction of P. acerifolia by C. ciliata revealed ten CYP450 genes, which exhibited significant up-regulation. Gene expression levels of several identified CYP450 genes were validated by quantitative RT- PCR. Further, a putative allene oxide synthase gene encoding the key enzyme involved in the jasmonic acid biosynthesis (PaCYP74A187) was cloned, homology modeled, and subjected to molecular docking analysis. We propose PaCYP74A187 as a key candidate CYP450 gene in P. acerifolia induced by C. ciliata damage, altogether our findings enhance comprehensive understanding of the mechanisms associated with insect-plant interactions that will undoubtedly offer new targets for controlling C. ciliata populations.

梧桐树花边虫(Corythucha ciliata)是全球范围内袭击伦敦行星树Platanus acerifolia的最重要害虫。我们认为植物细胞色素p4500s (cyp4500s)在毛蕊草和毛蕊草的相互作用中起着重要的作用。因此,鉴定具有转录活性的CYP450基因对于揭示其相互作用的机制至关重要。到目前为止,尚没有关于白杨CYP450基因的报道。在这项研究中,我们鉴定和鉴定了96个CYP450基因。这些基因被划分为8个氏族、41个家族和60个亚家族。值得注意的是,与拟南芥CYP450基因相比,48个基因表现出强烈的负选择。纤毛草取食后诱导的结果显示,10个CYP450基因显著上调。通过定量RT- PCR验证了几种CYP450基因的表达水平。此外,我们克隆了一个编码茉莉酸生物合成关键酶的推定的氧化丙烯合成酶基因PaCYP74A187,并进行了同源性建模和分子对接分析。我们提出PaCYP74A187是纤毛拟南芥(P. acerifolia)受纤毛拟南芥(C. ciliata)损伤诱导的CYP450基因的关键候选基因,这些发现增强了对昆虫-植物相互作用机制的全面理解,无疑将为控制纤毛拟南芥种群提供新的靶点。
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引用次数: 0
Evaluation of black gram (Vigna mungo (L.) Hepper) genotypes for coastal saline tolerance using microsatellite markers 黑克(Vigna mungo, L.)的鉴定利用微卫星标记对沿海盐耐受性进行基因型分析
IF 1.6 4区 生物学 Q3 PLANT SCIENCES Pub Date : 2023-11-30 DOI: 10.1007/s40415-023-00955-z
B. Priyadharshini, R. Anandan, S. Manikandan, J. Kanmani Bharathi, M. Prakash

Black gram is one of the important legume crops cultivated in the world, particularly in India mainly for protein requirements. It is grown mostly as a fallow crop in rotation with cereals. However, under saline stress conditions, the growth of the plants is reduced, ultimately resulting in a reduction in yield. The present investigations were carried out to evaluate the extent of genetic divergence and character association in 48 black gram genotypes for eleven biometric characters. In addition, the saline-tolerant genotypes were assessed in vitro. The analysis of variance revealed significant differences present in all the genotypes and showed a considerable amount of saline tolerance in the genotypes. Genetic diversity analysis using microsatellite markers revealed that out of a total of 21 SSR markers, 13 were polymorphic which revealed 47 alleles in forty-eight black gram genotypes with an average of 3 alleles per locus. Cluster analysis revealed that among the 21 markers used, 13 were found to be polymorphic with a transferability rate of 83%. From the present study, three genotypes, namely AUB 9, AUB 14 and AUB 20, were identified as saline-tolerant and were also confirmed by biometric and molecular analysis.

黑克是世界上重要的豆科作物之一,特别是在印度,主要用于蛋白质需求。它主要作为休耕作物与谷物轮作种植。然而,在盐胁迫条件下,植物的生长受到抑制,最终导致产量下降。本研究评估了48个黑克兰基因型的11个生物特征的遗传分化程度和性状关联。此外,对耐盐基因型进行了体外鉴定。方差分析显示,所有基因型之间存在显著差异,并显示出相当数量的盐耐受性。利用微卫星标记对21个SSR标记进行遗传多样性分析,发现13个SSR标记具有多态性,在48个黑克兰基因型中发现47个等位基因,平均每个位点有3个等位基因。聚类分析表明,21个标记中有13个多态性,可转移率为83%。从本研究中,AUB 9、AUB 14和AUB 20三个基因型被鉴定为耐盐型,并通过生物特征和分子分析得到了证实。
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引用次数: 0
Genome size and guard cell length are associated in four species of Miconia (Miconieae, Melastomataceae) 4种Miconia (Miconieae, Melastomataceae)基因组大小和保卫细胞长度的相关性研究
IF 1.6 4区 生物学 Q3 PLANT SCIENCES Pub Date : 2023-11-30 DOI: 10.1007/s40415-023-00962-0
Juliana K. Ziemmer, Patrícia Sperotto, Leila N. Vieira, Hugo P. F. Fraga, Erika Amano, Marcelo Reginato, Renato Goldenberg

Miconia Ruiz & Pav. (Melastomataceae) is the seventh largest genus of flowering plants, but despite the great diversity of species (ca. 1900), no genome size (GS) studies have been published on the group. Studies have shown that GS can strongly predict phenotypic characteristics such as guard cell length, stomatal density, and epidermal cell area. As more genome sizes become available, a more comprehensive understanding of the role that GS variation plays in cellular characteristics emerges. Here, for the first time, we estimate GS by flow cytometry in four Miconia species, Miconia australis (Cham.) R. Goldenb., Miconia hyemalis St. Hil. & Naud. ex Naud., Miconia sellowiana (DC.) Naudin, and Miconia nianga (DC.) R.Goldenb.). Subsequently, we carried out a comparative analysis of the relationship between GS and three phenotypic characteristics: guard cell length, stomatal density, and epidermal cell area. The estimated GS ranged from 0.56 to 1.2 pg, and this variation may be attributed to the distinct reproductive modes among the species analyzed. We found a strong positive correlation between GS and guard cell length (r2 = 0.92) and a low correlation in stomatal density and epidermal cell area (r2 = 0.07 and 0.06, respectively). In this pioneering study, we provide some conclusions or speculations, and point to new questions yet to be explored in Miconia.

Miconia Ruiz &;奶油水果蛋白饼。(Melastomataceae)是开花植物的第七大属,但尽管物种多样性很大(约1900年),尚未发表关于该组的基因组大小(GS)研究。研究表明,GS可以很好地预测保护细胞长度、气孔密度和表皮细胞面积等表型特征。随着更多基因组大小的可用性,对GS变异在细胞特征中所起作用的更全面的理解出现了。本研究首次利用流式细胞术对4种Miconia (Miconia australis, Cham;r . Goldenb。圣希尔薇根草;,Naud。Naud交货。紫薇花(华盛顿)Naudin和Miconia nianga (DC.)R.Goldenb)。随后,我们比较分析了GS与保护细胞长度、气孔密度和表皮细胞面积三个表型特征之间的关系。估计的GS值在0.56 ~ 1.2 pg之间,这种差异可能归因于所分析物种之间不同的生殖模式。结果表明,GS与保卫细胞长度呈正相关(r2 = 0.92),与气孔密度和表皮细胞面积呈低相关(r2分别为0.07和0.06)。在这项开创性的研究中,我们提供了一些结论或推测,并指出了Miconia有待探索的新问题。
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引用次数: 0
Enhanced root growth and nitric oxide content in ‘Mandarin’ lime under drought stress: experimental evidence 干旱胁迫下‘Mandarin’石灰根系生长和一氧化氮含量的增强:实验证据
IF 1.6 4区 生物学 Q3 PLANT SCIENCES Pub Date : 2023-11-29 DOI: 10.1007/s40415-023-00964-y
Neidiquele M. Silveira, Maria Isabel M. de Oliveira, Simone F. da Silva, Marcela T. Miranda, Matheus P. Passos, Eduardo C. Machado, Rafael V. Ribeiro

Our aim was to test the hypothesis that root growth of ‘Mandarin’ lime—a drought tolerant citrus rootstock—under water deficit is associated with higher nitric oxide (NO) content in roots. As a reference, ‘Swingle’ citrumelo was compared with ‘Mandarin’ lime, two well-known citrus rootstocks. ‘Valencia’ sweet orange plants grafted on ‘Mandarin’ lime or ‘Swingle’ citrumelo were kept well-hydrated or grown under water withholding. After 14 days of water deficit, root morphology was evaluated, and leaf and root samples were collected for NO analysis. Under low water availability, ‘Mandarin’ lime exhibited higher root NO content and root growth than ‘Swingle’ citrumelo. Indeed, NO seems to modulate not only root biomass accumulation but also root morphology as higher NO was associated with large increase in root length and area. Such findings suggest that root NO content is a relevant marker for early screening of drought-tolerant citrus genotypes. As a novelty, we show that ‘Mandarin’ lime drought tolerance is significantly associated with root NO content.

我们的目的是验证“柑桔”(柑橘类耐旱砧木)在缺水条件下根系生长与根系一氧化氮(NO)含量升高有关的假设。作为参考,“Swingle”citrumelo与“Mandarin”lime这两种著名的柑橘砧木进行了比较。嫁接在‘Mandarin’lime或‘Swingle’citrumelo上的‘Valencia’甜橙植株保持水分充足或在不浇水的情况下生长。亏水14 d后,评估根系形态,并采集叶片和根系样品进行NO分析。在低水分有效度条件下,‘柑桔’的根系NO含量和根系生长均高于‘柑橘’。事实上,NO似乎不仅调节根系生物量积累,还调节根系形态,因为较高的NO与根系长度和面积的大幅增加有关。这些结果表明,根系NO含量是早期筛选耐旱柑橘基因型的相关指标。作为一个新发现,我们发现' Mandarin ' lime耐旱性与根系NO含量显著相关。
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引用次数: 0
Did Moldenhawera flowers evolve through mimicry with oil-producing Malpighiaceae? Moldenhawera花是通过模仿产油的Malpighiaceae进化而来的吗?
IF 1.6 4区 生物学 Q3 PLANT SCIENCES Pub Date : 2023-11-29 DOI: 10.1007/s40415-023-00961-1
Luciano Paganucci de Queiroz, Jorge Antonio Silva Costa, Cristiana Barros Nascimento Costa

Floral mimicry is a captivating phenomenon wherein flowers imitate traits of other plants to attract specific pollinators. The Caesalpinioideae legumes in general have relatively unspecialized flowers, which has allowed the development of disparate morphologies adapted to different groups of pollinators. This study describes the pollination of Moldenhawera nutans L.P. Queiroz, G.P. Lewis & Allkin, and explores its potential floral mimicry toward Malpighiaceae flowers. Our investigation revealed that M. nutans is pollinated by bees of the genera Centris and Xylocopa. It also presents compelling evidence supporting the hypothesis of floral mimicry, including striking similarities in floral display, shared oil-collecting pollinators, oil collection behavior in M. nutans despite the absence of oil production, and the reliance on exogenous pollen for reproduction. These findings suggest that species of Centris visit M. nutans flowers under the mistaken impression of oil availability, subsequently transitioning to pollen collection. We explored other potential cases of floral mimicry with Malpighiaceae in the Caesalpinioideae legumes by optimizing the Malpighiaceae-like floral display on a dated phylogeny of this subfamily. However, current information does not allow us to determine whether the similarities in floral morphology represent cases of floral mimicry, phylogenetic inertia, or simple convergence. Hypothesis tests are suggested that can guide the study of these fascinating evolutionary processes in the group.

花的模仿是一种迷人的现象,花模仿其他植物的特征来吸引特定的传粉者。豆科植物通常有相对不特殊的花,这使得不同的形态发展适应不同的传粉者群体。本研究描述了Moldenhawera nutans L.P. Queiroz, G.P. Lewis &Allkin,并探索其潜在的花模仿的malpipiiaceae花。我们的调查表明,大鼠是由Centris属和Xylocopa属的蜜蜂传粉的。它还提供了令人信服的证据来支持花的模仿假说,包括在花的展示、共享的采油传粉媒介、在不产油的情况下在M. nutans中采集油的行为以及对外源花粉的依赖方面的惊人相似性。这些发现表明,Centris物种在油的可用性的错误印象下访问胡桃花,随后过渡到花粉收集。我们通过优化该亚科malpiighiaceae类花的系统发育,探索了该亚科中与malpiighiaceae类花相似的其他潜在案例。然而,目前的信息还不能让我们确定花形态的相似性是否代表了花的模仿,系统发育惰性,或简单的趋同。假设检验的建议,可以指导研究这些迷人的进化过程的群体。
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引用次数: 0
Genome-wide characterization and expression analysis of cyclic nucleotide-gated ion channels (CNGCs) gene family in Arabidopsis thaliana L. and Helianthus annuus L. for drought stress 干旱胁迫下拟南芥和向日葵环核苷酸门控离子通道(CNGCs)基因家族的全基因组特征及表达分析
IF 1.6 4区 生物学 Q3 PLANT SCIENCES Pub Date : 2023-11-29 DOI: 10.1007/s40415-023-00957-x
Sadaf Oranab, Hafiz Muhammad Ahmad, Sajid Fiaz, Athar Hussain, Muhammad Rizwan, Shazia Arif, Saira Ishaq, Shahnaz Zakia, Asmaa M. Abushady, Itoh Kimiko, Kotb A. Attia

Cyclic nucleotide-gated ion channels (CNGCs) genes play an important role to tolerate the abiotic stress tolerance in crop plants. The present study was designed to compare the molecular aspects of CNCG genes in Arabidopsis thaliana L. and Helianthus annuus L. using various computational tools. Through protein blast analysis, we identified nine CNGCs in H. annuus and subcellular locations indicated that these genes were unevenly distributed in various cellular components. The phylogenetic analysis of CNGCs genes was conducted among of A. thaliana, H. annuus, Gossypium hirsutum L., Brassica oleracea L. and Brassica rapa L. It was noted that in phylogenetic tree CNCG proteins of these crops were divided into four clads. Expression profiling of RNA-seq-data indicated that HanCNGC16 and HanCNGC15 play putative role under drought stress. The cis-regulatory analysis also identified several stress-responsive elements in HanCNGCs. The comparative genomics provided insights into the evolutionary history, duplication, divergence, gene gain and loss, species relationship, and structural diversity of CNGC in five species. These findings will not only provide widespread implications of CNGCs for their roles under drought stress in various crop species but also provided a reference study for the CNGC gene family in H. annuus.

环核苷酸门控离子通道(CNGCs)基因在作物抗非生物胁迫中起着重要作用。本研究旨在利用各种计算工具比较拟南芥(Arabidopsis thaliana L.)和向日葵(Helianthus annuus L.) CNCG基因的分子特征。通过蛋白母细胞分析,我们在黄杨中鉴定出9个CNGCs,亚细胞位置表明这些基因在不同细胞组分中的分布不均匀。对拟南芥(a.thaliana)、棉花(H. annus)、毛棉(Gossypium hirsutum L.)、甘蓝(Brassica ereracea L.)和油菜(Brassica rapa L.)的CNCG基因进行了系统发育分析,发现这些作物的CNCG蛋白在系统发育树上可划分为4个支系。rna -seq数据的表达谱分析表明,hangngc16和hangngc15可能在干旱胁迫下发挥作用。顺式调控分析还在hangngcs中发现了几个应激响应元件。比较基因组学对5个物种CNGC的进化史、复制、分化、基因得失、物种关系和结构多样性等方面进行了深入研究。这些研究结果不仅为CNGC基因在干旱胁迫下在不同作物中的作用提供了广泛的启示,也为棉蚜CNGC基因家族的研究提供了参考。
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引用次数: 0
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Brazilian Journal of Botany
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