Pub Date : 2023-10-31DOI: 10.1093/botlinnean/boad058
Patrícia Gentz, Rhaniel Nicholas Lisowski Gonçalves, Jorge Ernesto de Araújo Mariath
Abstract The taxonomic history of Parodia Speg. is marked by many incongruences regarding its circumscription. The main question remains regarding the union of five genera into Notocactus s.l. and, later, the union of Notocactus s.l. with Parodia s.s., leading to Parodia s.l. Given that the ovules are conserved structures and that their anatomical structure remains unexplored within the genus, we sought to identify whether the anatomical traits of these structures show potential taxonomic applicability and whether they provide information that allows the genus to be circumscribed. Samples of flower buds of 15 species and two taxa in synonymy were processed and stained using plant anatomy methods for light microscopy. The ovules of Parodia are campylotropous, bitegmic, and crassinucellate, with the micropyle delimited by the inner integument; in Parodia s.s. we observed the nucellus and embryo sac projection and changes to the micropyle type, characteristics that reflect the circumscriptions that distinguish this genus from others in the synonymy of Parodia s.l. The results may also be useful with regard to infrageneric issues, allowing the distinction of some morphologically similar taxa, adding to the discussion of their infrageneric positions. Thus, we highlight the importance of ovule anatomical traits within the taxonomic context of Parodia.
{"title":"Contribution of ovule anatomy to the taxonomic context of <i>Parodia</i> Spegazzini (Cactaceae)","authors":"Patrícia Gentz, Rhaniel Nicholas Lisowski Gonçalves, Jorge Ernesto de Araújo Mariath","doi":"10.1093/botlinnean/boad058","DOIUrl":"https://doi.org/10.1093/botlinnean/boad058","url":null,"abstract":"Abstract The taxonomic history of Parodia Speg. is marked by many incongruences regarding its circumscription. The main question remains regarding the union of five genera into Notocactus s.l. and, later, the union of Notocactus s.l. with Parodia s.s., leading to Parodia s.l. Given that the ovules are conserved structures and that their anatomical structure remains unexplored within the genus, we sought to identify whether the anatomical traits of these structures show potential taxonomic applicability and whether they provide information that allows the genus to be circumscribed. Samples of flower buds of 15 species and two taxa in synonymy were processed and stained using plant anatomy methods for light microscopy. The ovules of Parodia are campylotropous, bitegmic, and crassinucellate, with the micropyle delimited by the inner integument; in Parodia s.s. we observed the nucellus and embryo sac projection and changes to the micropyle type, characteristics that reflect the circumscriptions that distinguish this genus from others in the synonymy of Parodia s.l. The results may also be useful with regard to infrageneric issues, allowing the distinction of some morphologically similar taxa, adding to the discussion of their infrageneric positions. Thus, we highlight the importance of ovule anatomical traits within the taxonomic context of Parodia.","PeriodicalId":9178,"journal":{"name":"Botanical Journal of the Linnean Society","volume":"23 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135808952","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-31DOI: 10.1093/botlinnean/boad061
José Arturo De-Nova, Daniela Sofía Villegas-Ortega, Madeleyne Cupido, Virginia Gabriela Cilia-López
Abstract Biodiversity in the Neotropics includes an extraordinary diversity of plant variation produced by evolution that is useful for human well-being. Traditional knowledge of the Tenek, a Huastec Mayan culture, represents an important biocultural heritage for this realm. Here, we used the information about their useful plants to explore evolutionary biocultural patterns occurring in Neotropics. Our goal was to analyse the phylogenetic distribution of usage guilds, their degree of evolutionary clustering, significant associations, and phylogenetic overlap between guilds to test the hypothesis that Tenek selection of plants is not random but phylogenetically clustered. We found significant phylogenetic clustering in all usage guilds except ceremonial and medicine. Tenek people use a variety of relatively deep plant lineages providing specific services that biocultural processes have promoted in the ecosystems they inhabit. The lineages Asterales, Caryophyllales, Fabales, Lamiales, Malpighiales, and Malvales in eudicots and Poales and Asparagales in monocots concentrated most of the Huastec Mayan useful plants. Multi-functional hot nodes, including Asterales, Fabales, Lamiales, Malvales, Poaceae Sapindales, and Solanales, with phylogenetic overlap between usage guilds, should be major priority targets in conservation planning.
{"title":"Evolutionary clustering in Neotropical biocultural heritage: the Huastec Mayan useful plants","authors":"José Arturo De-Nova, Daniela Sofía Villegas-Ortega, Madeleyne Cupido, Virginia Gabriela Cilia-López","doi":"10.1093/botlinnean/boad061","DOIUrl":"https://doi.org/10.1093/botlinnean/boad061","url":null,"abstract":"Abstract Biodiversity in the Neotropics includes an extraordinary diversity of plant variation produced by evolution that is useful for human well-being. Traditional knowledge of the Tenek, a Huastec Mayan culture, represents an important biocultural heritage for this realm. Here, we used the information about their useful plants to explore evolutionary biocultural patterns occurring in Neotropics. Our goal was to analyse the phylogenetic distribution of usage guilds, their degree of evolutionary clustering, significant associations, and phylogenetic overlap between guilds to test the hypothesis that Tenek selection of plants is not random but phylogenetically clustered. We found significant phylogenetic clustering in all usage guilds except ceremonial and medicine. Tenek people use a variety of relatively deep plant lineages providing specific services that biocultural processes have promoted in the ecosystems they inhabit. The lineages Asterales, Caryophyllales, Fabales, Lamiales, Malpighiales, and Malvales in eudicots and Poales and Asparagales in monocots concentrated most of the Huastec Mayan useful plants. Multi-functional hot nodes, including Asterales, Fabales, Lamiales, Malvales, Poaceae Sapindales, and Solanales, with phylogenetic overlap between usage guilds, should be major priority targets in conservation planning.","PeriodicalId":9178,"journal":{"name":"Botanical Journal of the Linnean Society","volume":"74 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135808950","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-24DOI: 10.1093/botlinnean/boad052
Elizabeth W McCarthy, Jacob B Landis, Abigail G McCoy, Amber J Lawhorn, Amelda Kurti, Yimin Xu, James J Giovannoni, Amy Litt
Abstract Homeologue expression bias occurs when one progenitor copy of a gene is expressed at a higher level than the other in allopolyploids. Morphological variation, including differences in flower colour, exists between natural and synthetic allopolyploids of Nicotiana tabacum and their progenitors. In this study, we use a comparative transcriptomic approach to investigate gene expression differences as well as homeologue bias in the flavonoid biosynthetic pathway (FBP) in these accessions. We do not observe reciprocal homeologue bias between dark and light pink allopolyploids, but the production of light pink flowers is correlated with high FLAVONOL SYNTHASE:DIHYDROFLAVONOL-4-REDUCTASE (FLS:DFR) ratio at 60% of anthesis length due to delayed activation of DFR in these accessions. We do find that natural allopolyploids have stronger homeologue bias than synthetic allopolyploids in both FBP genes and across the transcriptome. While there is no overall subgenome dominance, there is a bias towards expression of N. tomentosiformis homeologues in FBP genes; however, the magnitude of this bias is reduced in allopolyploids compared to the progenitors, suggesting that N. sylvestris homeologues play an active role in the development of flower colour in N. tabacum allopolyploids. In addition, synthetic allopolyploids tend to exhibit trans regulation of homeologues whereas natural allopolyploids often have evolved cis-regulatory differences between homeologues since their origin.
{"title":"Homeologue differential expression in the flavonoid biosynthetic pathway underlies flower colour variation in natural and synthetic polyploids of <i>Nicotiana tabacum</i> (Solanaceae)","authors":"Elizabeth W McCarthy, Jacob B Landis, Abigail G McCoy, Amber J Lawhorn, Amelda Kurti, Yimin Xu, James J Giovannoni, Amy Litt","doi":"10.1093/botlinnean/boad052","DOIUrl":"https://doi.org/10.1093/botlinnean/boad052","url":null,"abstract":"Abstract Homeologue expression bias occurs when one progenitor copy of a gene is expressed at a higher level than the other in allopolyploids. Morphological variation, including differences in flower colour, exists between natural and synthetic allopolyploids of Nicotiana tabacum and their progenitors. In this study, we use a comparative transcriptomic approach to investigate gene expression differences as well as homeologue bias in the flavonoid biosynthetic pathway (FBP) in these accessions. We do not observe reciprocal homeologue bias between dark and light pink allopolyploids, but the production of light pink flowers is correlated with high FLAVONOL SYNTHASE:DIHYDROFLAVONOL-4-REDUCTASE (FLS:DFR) ratio at 60% of anthesis length due to delayed activation of DFR in these accessions. We do find that natural allopolyploids have stronger homeologue bias than synthetic allopolyploids in both FBP genes and across the transcriptome. While there is no overall subgenome dominance, there is a bias towards expression of N. tomentosiformis homeologues in FBP genes; however, the magnitude of this bias is reduced in allopolyploids compared to the progenitors, suggesting that N. sylvestris homeologues play an active role in the development of flower colour in N. tabacum allopolyploids. In addition, synthetic allopolyploids tend to exhibit trans regulation of homeologues whereas natural allopolyploids often have evolved cis-regulatory differences between homeologues since their origin.","PeriodicalId":9178,"journal":{"name":"Botanical Journal of the Linnean Society","volume":"27 5","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135219377","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-16DOI: 10.1093/botlinnean/boad049
Mauricio J Cano, Louis Ronse De Craene
Abstract The Primuloid clade or Primulaceae sensus lato is well supported and contains several pollination syndromes, including wind pollination and insect pollination with pollen, nectar, or oil as a reward. Previous studies have recognized two types of nectaries (floral and extrafloral) with different distributions (e.g. ovary, stigma, style, pedicel). This study aimed to reassess the diversity of nectary types, and their distribution and evolution within the clade. Flowers were selected to represent the four subfamilies Maesoideae, Theophrastoideae, Primuloideae, and Myrsinoideae. The flowers were investigated for nectary tissue with electron microscopy, light microscopy, and sugar tests. Nectar is mainly exuded by gynoecial nectarostomata (in Maeseoideae, Theophrastoideae, Primuloideae, and a few basal Myrsinoideae, such as Stimpsonia and Coris) distributed at the base, middle, and top part of the ovary. Myrsinoideae is the exception with an absence of a nectary linked to buzz-pollination, or presenting nectariferous or oil-producing trichomes on the perianth and stamens. The evolution of nectaries is variable in the Primuloid clade, with Primuloideae apparently the starting point of an evolutionary reversal in terms of nectary evolution within this clade, and a high diversity of nectaries within the Myrsinoideae representing various trends that are currently under-investigated. The evolution of floral nectaries in Primulaceae presents an exciting shift from nectar-producing flowers towards a loss of nectaries, and an evolutionary reversal with a shift to the co-option of either oil-producing trichomes or nectar-producing trichomes.
{"title":"Evolution of the floral nectaries in the Primulaceae <i>sensus lato</i> (Ericales)","authors":"Mauricio J Cano, Louis Ronse De Craene","doi":"10.1093/botlinnean/boad049","DOIUrl":"https://doi.org/10.1093/botlinnean/boad049","url":null,"abstract":"Abstract The Primuloid clade or Primulaceae sensus lato is well supported and contains several pollination syndromes, including wind pollination and insect pollination with pollen, nectar, or oil as a reward. Previous studies have recognized two types of nectaries (floral and extrafloral) with different distributions (e.g. ovary, stigma, style, pedicel). This study aimed to reassess the diversity of nectary types, and their distribution and evolution within the clade. Flowers were selected to represent the four subfamilies Maesoideae, Theophrastoideae, Primuloideae, and Myrsinoideae. The flowers were investigated for nectary tissue with electron microscopy, light microscopy, and sugar tests. Nectar is mainly exuded by gynoecial nectarostomata (in Maeseoideae, Theophrastoideae, Primuloideae, and a few basal Myrsinoideae, such as Stimpsonia and Coris) distributed at the base, middle, and top part of the ovary. Myrsinoideae is the exception with an absence of a nectary linked to buzz-pollination, or presenting nectariferous or oil-producing trichomes on the perianth and stamens. The evolution of nectaries is variable in the Primuloid clade, with Primuloideae apparently the starting point of an evolutionary reversal in terms of nectary evolution within this clade, and a high diversity of nectaries within the Myrsinoideae representing various trends that are currently under-investigated. The evolution of floral nectaries in Primulaceae presents an exciting shift from nectar-producing flowers towards a loss of nectaries, and an evolutionary reversal with a shift to the co-option of either oil-producing trichomes or nectar-producing trichomes.","PeriodicalId":9178,"journal":{"name":"Botanical Journal of the Linnean Society","volume":"184 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136079821","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-16DOI: 10.1093/botlinnean/boad053
Tomoko Fukuda, Naoko Ishikawa, Olga A Chernyagina, Vyacheslav Y Barkalov, Aleksandr A Taran, Valentin V Yakubov, Elena A Marchuk, Elena V Linnik, Ichiro Tamaki
Abstract Micranthes nelsoniana possesses multiple different variants and numerous chromosomes. Based on the internal transcribed spacer (ITS) and chloroplast (cp)DNA sequences, the phylogeography of M. nelsoniana and its relatives in Northeast Asia was investigated, with extensive sampling around the Kuril Islands. The Arctic–Asian continent and a clade of marginal islands were the two main groupings that comprised the ITS phylogenetic tree. The island clade was separated into five well-supported clades: Kamchatka and Hokkaido highlands, Kuril–Aleutian Islands, southern Kuril Islands, Japanese archipelago, and Primorye region. Micranthes fusca was found in Japan and in the southern Kuril Islands. It is a separate species that created several types of hybrids between M. nelsoniana in the centre of the Kuril Islands based on a comparison of the ITS and cpDNA networks. Micranthes nelsoniana and M. ohwii appear to have hybridized in the northern Kuril Islands. Cytological investigation on the local species of M. nelsoniana showed that the chromosomal numbers are: 2n = 24, 26, 28, 30, 50, and 80. Among them, two usual numbers to this area, 2n = 24 and 50, appear to encourage interspecific gene exchange. The genomes of Hokkaido plants with high chromosome counts were cloned, revealing that they contained genes of both continental and marginal origins. This study revealed the crucial role of marginal islands along Northeast Asia in the genetic diversity of M. nelsoniana and related species.
{"title":"Phylogeography and chromosome number variation in <i>Micranthes nelsoniana</i> and related species (Saxifragaceae) in Northeast Asia","authors":"Tomoko Fukuda, Naoko Ishikawa, Olga A Chernyagina, Vyacheslav Y Barkalov, Aleksandr A Taran, Valentin V Yakubov, Elena A Marchuk, Elena V Linnik, Ichiro Tamaki","doi":"10.1093/botlinnean/boad053","DOIUrl":"https://doi.org/10.1093/botlinnean/boad053","url":null,"abstract":"Abstract Micranthes nelsoniana possesses multiple different variants and numerous chromosomes. Based on the internal transcribed spacer (ITS) and chloroplast (cp)DNA sequences, the phylogeography of M. nelsoniana and its relatives in Northeast Asia was investigated, with extensive sampling around the Kuril Islands. The Arctic–Asian continent and a clade of marginal islands were the two main groupings that comprised the ITS phylogenetic tree. The island clade was separated into five well-supported clades: Kamchatka and Hokkaido highlands, Kuril–Aleutian Islands, southern Kuril Islands, Japanese archipelago, and Primorye region. Micranthes fusca was found in Japan and in the southern Kuril Islands. It is a separate species that created several types of hybrids between M. nelsoniana in the centre of the Kuril Islands based on a comparison of the ITS and cpDNA networks. Micranthes nelsoniana and M. ohwii appear to have hybridized in the northern Kuril Islands. Cytological investigation on the local species of M. nelsoniana showed that the chromosomal numbers are: 2n = 24, 26, 28, 30, 50, and 80. Among them, two usual numbers to this area, 2n = 24 and 50, appear to encourage interspecific gene exchange. The genomes of Hokkaido plants with high chromosome counts were cloned, revealing that they contained genes of both continental and marginal origins. This study revealed the crucial role of marginal islands along Northeast Asia in the genetic diversity of M. nelsoniana and related species.","PeriodicalId":9178,"journal":{"name":"Botanical Journal of the Linnean Society","volume":"41 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136079040","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-14DOI: 10.1093/botlinnean/boad044
Fernando S Cabral, Duane F Lima, Magdalena Vaio, Pedro Fiaschi
Abstract Oxalis subg. Thamnoxys is a mostly South American group of Oxalis encompassing almost 80 species from tropical habitats that are currently separated into nine sections based on morphology and geographic distributions. In this study, we investigated whether Oxalis subg. Thamnoxys and its sections are monophyletic. DNA sequences of the nrITS, trnL-trnL-trnF, and petA-psbJ from 92 specimens of Oxalis (55 from O. subg. Thamnoxys, 37 from O. subg. Oxalis, and five outgroup taxa) were used to investigate phylogenetic relationships among its nine sections. Nuclear and plastid molecular markers were subjected to maximum likelihood and Bayesian inference analyses individually and in a combined data matrix. Our phylogenetic trees recovered O. subg. Thamnoxys as monophyletic only if O. praetexta, previously included in O. sect. Robustae, is transferred to O. subg. Oxalis. The remaining samples of the subgenus emerged in a clade with full bootstrap and posterior probability support. Within it, O. sect. Holophyllum was the only section that was recovered as monophyletic, whereas the remaining sections were not, either because of sampling a single species of each (O. sect. Foliosae, Hedysaroideae, and Phyllodoxys), to the unexpected placement of O. goyazensis (O. sect. Robustae) in O. sect. Psoraleoideae, or to the sister relationship between O. densifolia (O. sect. Foliosae) with O. pyrenea var. macrochaeta (O. sect. Thamnoxys), suggesting the need of revaluating some specific affinities and updating sectional circumscriptions. This phylogenetic study with an improved sampling of O. subg. Thamnoxys is the first step towards an updated classification of the subgenus and for interpreting both its morphological diversification and biogeographic history in South America.
{"title":"Molecular phylogenetics of <i>Oxalis</i> subg. <i>Thamnoxys</i> (Oxalidaceae) reveals artificial arrangements of traditional sections","authors":"Fernando S Cabral, Duane F Lima, Magdalena Vaio, Pedro Fiaschi","doi":"10.1093/botlinnean/boad044","DOIUrl":"https://doi.org/10.1093/botlinnean/boad044","url":null,"abstract":"Abstract Oxalis subg. Thamnoxys is a mostly South American group of Oxalis encompassing almost 80 species from tropical habitats that are currently separated into nine sections based on morphology and geographic distributions. In this study, we investigated whether Oxalis subg. Thamnoxys and its sections are monophyletic. DNA sequences of the nrITS, trnL-trnL-trnF, and petA-psbJ from 92 specimens of Oxalis (55 from O. subg. Thamnoxys, 37 from O. subg. Oxalis, and five outgroup taxa) were used to investigate phylogenetic relationships among its nine sections. Nuclear and plastid molecular markers were subjected to maximum likelihood and Bayesian inference analyses individually and in a combined data matrix. Our phylogenetic trees recovered O. subg. Thamnoxys as monophyletic only if O. praetexta, previously included in O. sect. Robustae, is transferred to O. subg. Oxalis. The remaining samples of the subgenus emerged in a clade with full bootstrap and posterior probability support. Within it, O. sect. Holophyllum was the only section that was recovered as monophyletic, whereas the remaining sections were not, either because of sampling a single species of each (O. sect. Foliosae, Hedysaroideae, and Phyllodoxys), to the unexpected placement of O. goyazensis (O. sect. Robustae) in O. sect. Psoraleoideae, or to the sister relationship between O. densifolia (O. sect. Foliosae) with O. pyrenea var. macrochaeta (O. sect. Thamnoxys), suggesting the need of revaluating some specific affinities and updating sectional circumscriptions. This phylogenetic study with an improved sampling of O. subg. Thamnoxys is the first step towards an updated classification of the subgenus and for interpreting both its morphological diversification and biogeographic history in South America.","PeriodicalId":9178,"journal":{"name":"Botanical Journal of the Linnean Society","volume":"13 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135766612","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-14DOI: 10.1093/botlinnean/boad055
Bokyung Choi, Marco F Duretto, Suk-Pyo Hong
Abstract The Eriostemon–Phebalium clade (Rutaceae) includes c. 200 species across 16 genera, and is distributed in Australia (including Tasmania), New Caledonia, New Hebrides, New Zealand, and New Guinea. Phylogenetic analyses based on DNA sequences have consistently shown that the Eriostemon–Phebalium group is robustly monophyletic. However, despite this, taxonomy within the group is still uncertain: relationships between the genera are not well understood, and the genus Philotheca is polyphyletic. Seed morphological characters can be useful in taxonomy in angiosperms, and in this study, 21 seed morphological characters for 29 taxa of all the 16 genera circumscribed in the Eriostemon–Phebalium clade were examined using stereo and scanning electron microscopy. Seed morphological traits such as testa type and hilum were informative for some of the robustly supported clades in molecular phylogenetic studies, and a combination of seed characters could be useful for species identification. This study highlights the potential of seed morphological traits for the systematics.
{"title":"Seed morphology of the <i>Eriostemon</i>–<i>Phebalium</i> clade (Rutaceae–Zanthoxyloideae) and implications for systematics","authors":"Bokyung Choi, Marco F Duretto, Suk-Pyo Hong","doi":"10.1093/botlinnean/boad055","DOIUrl":"https://doi.org/10.1093/botlinnean/boad055","url":null,"abstract":"Abstract The Eriostemon–Phebalium clade (Rutaceae) includes c. 200 species across 16 genera, and is distributed in Australia (including Tasmania), New Caledonia, New Hebrides, New Zealand, and New Guinea. Phylogenetic analyses based on DNA sequences have consistently shown that the Eriostemon–Phebalium group is robustly monophyletic. However, despite this, taxonomy within the group is still uncertain: relationships between the genera are not well understood, and the genus Philotheca is polyphyletic. Seed morphological characters can be useful in taxonomy in angiosperms, and in this study, 21 seed morphological characters for 29 taxa of all the 16 genera circumscribed in the Eriostemon–Phebalium clade were examined using stereo and scanning electron microscopy. Seed morphological traits such as testa type and hilum were informative for some of the robustly supported clades in molecular phylogenetic studies, and a combination of seed characters could be useful for species identification. This study highlights the potential of seed morphological traits for the systematics.","PeriodicalId":9178,"journal":{"name":"Botanical Journal of the Linnean Society","volume":"21 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135767015","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-14DOI: 10.1093/botlinnean/boad051
Francis J Nge, Jürgen Kellermann, Ed Biffin, Kevin R Thiele, Michelle Waycott
Abstract The Australian continent has experienced progressive aridification since the Miocene, spurring recent radiations of arid-adapted lineages and the likely decline of mesic biotic groups. While examples of the former have been relatively well-documented, post-Miocene declines of non-arid sclerophyllous floras are less well understood. Here, we present a well-sampled time-calibrated nuclear phylogeny (140 accessions representing 60/65 species) of an Australian plant genus (Cryptandra Sm.: Rhamnaceae) and using ancestral range reconstructions and diversification analyses, elucidate its evolutionary history through space and time. We used high-throughput sequencing to recover 30 orthologous nuclear loci and BioGeoBEARS to infer ancestral areas. We show that the present-day distribution of Cryptandra can be explained by multiple vicariance events followed by in situ diversification with little exchange between regions. All diversification models show a speciation rate decline in Cryptandra after its radiation in the Miocene (c. 23 Mya). This coincides with aridification episodes across Australia and indicates that diversification of this genus has been negatively affected by the expansion of aridity. We also show that there were no significant differences in diversification rates between spinescent and non-spinescent Cryptandra lineages, suggesting that spinescent lineages may be the legacies of selection from extinct megaherbivores.
{"title":"Rise and fall of a continental mesic radiation in Australia: spine evolution, biogeography, and diversification of <i>Cryptandra</i> (Rhamnaceae: Pomaderreae)","authors":"Francis J Nge, Jürgen Kellermann, Ed Biffin, Kevin R Thiele, Michelle Waycott","doi":"10.1093/botlinnean/boad051","DOIUrl":"https://doi.org/10.1093/botlinnean/boad051","url":null,"abstract":"Abstract The Australian continent has experienced progressive aridification since the Miocene, spurring recent radiations of arid-adapted lineages and the likely decline of mesic biotic groups. While examples of the former have been relatively well-documented, post-Miocene declines of non-arid sclerophyllous floras are less well understood. Here, we present a well-sampled time-calibrated nuclear phylogeny (140 accessions representing 60/65 species) of an Australian plant genus (Cryptandra Sm.: Rhamnaceae) and using ancestral range reconstructions and diversification analyses, elucidate its evolutionary history through space and time. We used high-throughput sequencing to recover 30 orthologous nuclear loci and BioGeoBEARS to infer ancestral areas. We show that the present-day distribution of Cryptandra can be explained by multiple vicariance events followed by in situ diversification with little exchange between regions. All diversification models show a speciation rate decline in Cryptandra after its radiation in the Miocene (c. 23 Mya). This coincides with aridification episodes across Australia and indicates that diversification of this genus has been negatively affected by the expansion of aridity. We also show that there were no significant differences in diversification rates between spinescent and non-spinescent Cryptandra lineages, suggesting that spinescent lineages may be the legacies of selection from extinct megaherbivores.","PeriodicalId":9178,"journal":{"name":"Botanical Journal of the Linnean Society","volume":"17 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135767399","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-11DOI: 10.1093/botlinnean/boad032
Farzaneh Habibi, Sergei L Mosyakin, Oleksandr I Shynder, Karol Krak, Dijana Čortan, Gabrielle A Filippi, Bohumil Mandák
Abstract In 2020, S. Mosyakin and B. Mandák described a new species from the Chenopodium album aggregate, C. ucrainicum. The description of the species was based mainly on its distinct morphological characters. This study aims to improve our understanding of C. ucrainicum by combining karyological, cytological, molecular, and distribution information. All analyses demonstrated that C. ucrainicum is closely related to C. ficifolium and C. suecicum, the species with the ‘BB’ subgenome. It has the same diploid number of chromosomes (2n = 2x = 18), has very similar genome size (mean ± SD, 1.865 ± 0.026 pg), and is included in the same haplogroup together with polyploid species with the subgenome combination ‘BBDD’. Nevertheless, the haplotype of C. ucrainicum is unique and is not shared with any known closely related species, indicating that the species is very well delimited from other related taxa. A similar result was obtained by RAD-seq data. This finding is particularly significant because species with the ‘BB’ genome played an integral part in the evolution of several allopolyploid taxa, some of which are widespread weeds (C. album s.s., C. berlandieri) or economically important species (C. quinoa). Morphologically, the closest species remains C. suecicum, which is, however, very well genetically differentiated.
2020年，S. Mosyakin和B. Mandák报道了Chenopodium album aggregate中的一个新种C. ucrainicum。对该物种的描述主要基于其独特的形态特征。本研究旨在结合核学、细胞学、分子和分布等方面的信息，提高我们对乌克兰弧菌的认识。结果表明，C. ucrainicum与具有BB亚基因组的C. ficifolium和C. suecicum亲缘关系较近。它具有相同的二倍体染色体数目(2n = 2x = 18)，具有非常相似的基因组大小(平均值±SD, 1.865±0.026 pg)，并与具有亚基因组组合“BBDD”的多倍体物种包括在同一个单倍群中。然而，C. ucrainicum的单倍型是独特的，并且没有与任何已知的近缘物种共享，这表明该物种与其他相关分类群有很好的区分。RAD-seq数据也得到了类似的结果。这一发现具有特别重要的意义，因为具有“BB”基因组的物种在几个异源多倍体分类群的进化中发挥了不可或缺的作用，其中一些是广泛分布的杂草(C. album s.s, C. berlandieri)或经济上重要的物种(C. quinoa)。在形态上，最接近的物种仍然是C. suecicum，然而，这是非常好的遗传分化。
{"title":"<i>Chenopodium ucrainicum</i> (Amaranthaceae), a new ‘BB’ genome diploid species: karyological, cytological, and molecular evidence","authors":"Farzaneh Habibi, Sergei L Mosyakin, Oleksandr I Shynder, Karol Krak, Dijana Čortan, Gabrielle A Filippi, Bohumil Mandák","doi":"10.1093/botlinnean/boad032","DOIUrl":"https://doi.org/10.1093/botlinnean/boad032","url":null,"abstract":"Abstract In 2020, S. Mosyakin and B. Mandák described a new species from the Chenopodium album aggregate, C. ucrainicum. The description of the species was based mainly on its distinct morphological characters. This study aims to improve our understanding of C. ucrainicum by combining karyological, cytological, molecular, and distribution information. All analyses demonstrated that C. ucrainicum is closely related to C. ficifolium and C. suecicum, the species with the ‘BB’ subgenome. It has the same diploid number of chromosomes (2n = 2x = 18), has very similar genome size (mean ± SD, 1.865 ± 0.026 pg), and is included in the same haplogroup together with polyploid species with the subgenome combination ‘BBDD’. Nevertheless, the haplotype of C. ucrainicum is unique and is not shared with any known closely related species, indicating that the species is very well delimited from other related taxa. A similar result was obtained by RAD-seq data. This finding is particularly significant because species with the ‘BB’ genome played an integral part in the evolution of several allopolyploid taxa, some of which are widespread weeds (C. album s.s., C. berlandieri) or economically important species (C. quinoa). Morphologically, the closest species remains C. suecicum, which is, however, very well genetically differentiated.","PeriodicalId":9178,"journal":{"name":"Botanical Journal of the Linnean Society","volume":"25 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136063972","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-05DOI: 10.1093/botlinnean/boad054
Dora Yovana Barrios-Leal, Rodolpho S T Menezes, Daniela Zappi, Maura Helena Manfrin
Abstract The Caatinga biogeographical region, located in the semi-arid region of northeastern Brazil, is characterized by high levels of cactus diversity and endemism. In this study, we investigated the genetic diversity, differentiation, and phylogeography of three Tacinga species (Tacinga inamoena, Tacinga subcylindrica, and Tacinga palmadora), which are endemic and widely distributed in the Caatinga. We collected 222 samples from 108 locations and used plastid (3ʹrps16-5ʹtrnK, PsbE-PetL) and nuclear (PhyC) molecular markers for a multilocus approach. Our results suggest that diversification of the three Tacinga species occurred during the middle Pleistocene, with the Southern Sertaneja Depression ecoregion of the Caatinga being identified as the ancestral area. Interestingly, analyses of genetic structure did not show any evidence that the major river in the region (the Sao Francisco River) and the Caatinga ecoregions acted as biogeographical barriers for gene flow in these species. This suggests that the three Tacinga species exhibited different responses to widely accepted geographical and geomorphological barriers known to affect other taxonomic groups in the Caatinga. Overall, our findings provide new insights into the biogeographical history of the Caatinga and the factors that have shaped diversification and genetic structure of species in this region. Our study underlines the importance of considering the unique natural history and biological characteristics of individual taxonomic groups when investigating the biogeography of the Caatinga.
{"title":"Unravelling the genetic diversity and population dynamics of three <i>Tacinga</i> species (Cactaceae: Opuntioideae) in the Caatinga","authors":"Dora Yovana Barrios-Leal, Rodolpho S T Menezes, Daniela Zappi, Maura Helena Manfrin","doi":"10.1093/botlinnean/boad054","DOIUrl":"https://doi.org/10.1093/botlinnean/boad054","url":null,"abstract":"Abstract The Caatinga biogeographical region, located in the semi-arid region of northeastern Brazil, is characterized by high levels of cactus diversity and endemism. In this study, we investigated the genetic diversity, differentiation, and phylogeography of three Tacinga species (Tacinga inamoena, Tacinga subcylindrica, and Tacinga palmadora), which are endemic and widely distributed in the Caatinga. We collected 222 samples from 108 locations and used plastid (3ʹrps16-5ʹtrnK, PsbE-PetL) and nuclear (PhyC) molecular markers for a multilocus approach. Our results suggest that diversification of the three Tacinga species occurred during the middle Pleistocene, with the Southern Sertaneja Depression ecoregion of the Caatinga being identified as the ancestral area. Interestingly, analyses of genetic structure did not show any evidence that the major river in the region (the Sao Francisco River) and the Caatinga ecoregions acted as biogeographical barriers for gene flow in these species. This suggests that the three Tacinga species exhibited different responses to widely accepted geographical and geomorphological barriers known to affect other taxonomic groups in the Caatinga. Overall, our findings provide new insights into the biogeographical history of the Caatinga and the factors that have shaped diversification and genetic structure of species in this region. Our study underlines the importance of considering the unique natural history and biological characteristics of individual taxonomic groups when investigating the biogeography of the Caatinga.","PeriodicalId":9178,"journal":{"name":"Botanical Journal of the Linnean Society","volume":"96 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135546175","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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