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Birth and death evolution of polyphenol oxidase (PPO) gene family in Oryza species. 水稻多酚氧化酶(PPO)基因家族的生灭演化
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2026-02-05 DOI: 10.1186/s40529-026-00491-5
Yuan-Ching Tsai, Yi-Jing Chen, Sou-Yu Cheng, Charng-Pei Li, Ming-Der Huang
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引用次数: 0
Comparative metabolomic analysis in roots of natural and cultivated Astragalus membranaceus in Mongolia. 蒙古天然黄芪与栽培黄芪根代谢组学比较分析。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2026-01-26 DOI: 10.1186/s40529-026-00490-6
Munkhtsetseg Tsednee, Chao-Yu Hsu, Shingo Sakamoto, Nobutaka Mitsuda, Bolor Tsolmon, Ming-Tsair Chan, Chuan-Ming Yeh

Background: Astragalus membranaceus, a valuable medicinal plant, is widely used in the pharmaceutical, food, and nutritional industries due to its rich bioactive compounds. Its increasing demand has led to extensive cultivation of A. membranaceus to supplement natural resources and ensure a stable supply. However, comparing the metabolic characteristics of natural and cultivated plants is essential for understanding their quality, authenticity, and potential pharmacological differences.

Results: We conducted a comparative analysis of polysaccharide and monosaccharide composition and untargeted metabolite profiling in the roots of natural and cultivated A. membranaceus plants in Mongolia. The levels of alcohol soluble total polysaccharides and the major abundant monosaccharides were similar between natural and cultivated A. membranaceus roots. Whereas several less abundant monosaccharides showed reduced levels in the cultivated roots. Untargeted metabolomic profiling identified a total of 157 metabolites, among which 42 and 35 were differentially accumulated in natural and cultivated roots, respectively. Most metabolites showed increased levels in the cultivated roots; however, 32 metabolites were enriched in natural roots. Functional pathway enrichment revealed distinct metabolic features between the two root types. In natural roots, pathways related to stress response, biosynthesis of secondary metabolites, and energy production were enriched. In cultivated roots, the enriched metabolic pathways were linked to primary metabolism, growth, and energy production.

Conclusions: Our findings reveal distinct metabolic characteristics between natural and cultivated A. membranaceus roots, likely shaped by differences in growth environments, soil conditions, and adaptive metabolic reprogramming. These results provide a valuable reference for evaluating, authenticating, and distinguishing natural and cultivated A. membranaceus roots, and offer insights into their pharmacological potential and quality control.

背景:黄芪是一种珍贵的药用植物,因其丰富的生物活性成分而被广泛应用于制药、食品和营养等行业。由于对黄芪的需求不断增加,人们开始广泛种植黄芪,以补充自然资源并确保稳定的供应。然而,比较天然植物和栽培植物的代谢特性对于了解它们的质量、真实性和潜在的药理差异至关重要。结果:我们对蒙古天然和栽培黄芪根中多糖和单糖组成及非靶向代谢物谱进行了比较分析。天然根和栽培根的醇溶性总多糖和主要丰度单糖含量相近。而一些含量较少的单糖在培养的根中含量降低。非靶向代谢组学分析共鉴定出157种代谢物,其中42种和35种代谢物在天然根和栽培根中分别有差异积累。大多数代谢物在栽培根中呈升高趋势;而天然根中有32种代谢物富集。功能途径富集揭示了两种根类型之间不同的代谢特征。在天然根系中,与应激反应、次生代谢产物的生物合成和能量生产相关的途径丰富。在栽培根中,丰富的代谢途径与初级代谢、生长和能量生产有关。结论:我们的研究结果揭示了天然和栽培黄芪根之间不同的代谢特征,这可能是由生长环境、土壤条件和适应性代谢重编程的差异决定的。这些结果为评价、鉴定和区分天然和栽培黄芪根提供了有价值的参考,并为黄芪根的药理潜力和质量控制提供了参考。
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引用次数: 0
Integrative taxonomic revision of three Camellia species from section Tuberculata (Camellia, Theaceae) by morphological, anatomical, palynological, and molecular evidence. 基于形态学、解剖学、孢粉学和分子证据对结核科三种山茶的综合分类修正。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2026-01-19 DOI: 10.1186/s40529-025-00489-5
Weihao Gu, Mingtai An, Chao Yan, Xu Xiao, Zhaohui Ran, Zhi Li
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引用次数: 0
Colourful agrobiodiversity: morphology and phenology of bean landraces to face commodification of the commons in the southern Andes. 丰富多彩的农业生物多样性:面对南安第斯地区公共资源商品化的大豆地方品种的形态和物候。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2026-01-15 DOI: 10.1186/s40529-025-00488-6
María J Romero-Silva, Rayén Liechti-Araneda, J Tomás Ibarra-Eliessetch, Constanza Monterrubio-Solís, Antonia Barreau-Daly
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引用次数: 0
Balancing nature and technology: enhancing flowering in ornamental plants. 平衡自然与技术:促进观赏植物开花。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-12-16 DOI: 10.1186/s40529-025-00487-7
Zhen-Rong Cai, Dewi Sukma, Ming-Tsair Chan
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引用次数: 0
Two new synonyms and a name at new rank of Oreocharis Benth. (Gesneriaceae) in China. 两个新的同义词和一个新的名字在Oreocharis Benth的等级。(苦苣苔科)在中国。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-12-16 DOI: 10.1186/s40529-025-00485-9
Xiaokai Xiong, Meijun Li, Zhi Li, Fang Wen, Xinxiang Bai
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引用次数: 0
Phylogenetic analysis of Dianthus using ITS and RAPD markers reveals insights for carnation breeding. 利用ITS和RAPD对石竹进行系统发育分析,为石竹育种提供参考。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-12-03 DOI: 10.1186/s40529-025-00475-x
Carlo Mascariola Cabillo, Yuan-Hua Tuan, Yen-Ming Chen, Yu-Ting Huang, Chia-Wen Li, I-Chun Pan

Background: Carnation and Dianthus (Dianthus spp) are globally cultivated as a cut flower, yet high summer temperatures in Taiwan significantly reduce the yield and quality of commercial cultivars. To enhance stress tolerance traits such as heat resistance and disease resistance, interspecific and intergeneric hybridization with native species is a viable approach. Since the success of hybridization is influenced by genetic distance, this study aimed to clarify the phylogenetic relationships among native species, commercial cultivars, and interspecific hybrids using internal transcribed spacer (ITS) and random amplified polymorphic DNA (RAPD) markers.

Results: Phylogenetic analysis based on RAPD markers effectively differentiated among native Taiwanese species, commercial varieties, interspecific hybrids, and outgroup taxa. ITS markers, on the other hand, were more informative for identifying parent-offspring relationships. Notably, Dianthus superbus var. longicalycinus from Taiwan and Japan, despite sharing the same scientific name, exhibited clear distinctions in both morphological traits and molecular profiles.

Conclusions: The combined use of RAPD and ITS markers provides complementary insights into the genetic relationships within the Dianthus genus. These findings not only support the strategic use of molecular markers in breeding programs but also highlight the need to reassess taxonomic classifications among morphologically similar varieties. This study provides genetics, breeding tools, and germplasm information for future Dianthus breeding.

背景:康乃馨和石竹(石竹属)作为切花在全球种植,但台湾夏季高温显著降低了商业品种的产量和质量。通过与本地种的种间和属间杂交,提高植物的耐热性和抗病性等抗逆性是一种可行的途径。由于杂交的成功与否受遗传距离的影响,本研究旨在利用内部转录间隔(ITS)和随机扩增多态性DNA (RAPD)标记来阐明本地种、商业栽培品种和种间杂交品种之间的系统发育关系。结果:基于RAPD标记的系统发育分析可有效区分台湾本地种、商品品种、种间杂种和外群分类群。另一方面,ITS标记在识别亲子关系方面提供了更多信息。值得注意的是,台湾和日本的石竹(Dianthus superbus var. longicalycinus)虽然学名相同,但在形态特征和分子图谱上却有明显的差异。结论:RAPD和ITS标记的结合使用为石竹属植物的亲缘关系提供了互补的见解。这些发现不仅支持分子标记在育种计划中的战略性使用,而且强调了重新评估形态相似品种的分类分类的必要性。本研究为今后石竹育种提供了遗传学、育种工具和种质信息。
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引用次数: 0
The Biella paradox: the resilience of plant foraging in a post-industrial pre-alpine area of Northern Italy. 比埃拉悖论:意大利北部后工业前高山地区植物觅食的恢复力。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-11-21 DOI: 10.1186/s40529-025-00486-8
Mousaab Alrhmoun, Naji Sulaiman, Sofia Villa, Michele Filippo Fontefrancesco, Andrea Pieroni

Background: This study explores the continuity and transformation of wild plant foraging practices in Biella, Piedmont (northwestern Italy), over the past 55 years. The aim was to assess how cultural, economic, and environmental shifts have shaped local ethnobotanical knowledge and practices, using a 1970 survey as a baseline for comparison. Ethnobotanical fieldwork was conducted with 15 local informants to document current wild plant uses for food and herbal teas.

Results: The resulting dataset of 82 species was compared with a historical record of 93 species to identify patterns of continuity, loss, and innovation. Three main patterns emerged: (1) the disappearance of certain traditionally foraged plants, not due to ecological absence but largely because of socio-economic changes like the decline of pastoralism and the loss of daily interaction with mountain environments (2) the emergence of new foraging practices involving species that grow near settlements, linked to evolving lifestyles and land use; and (3) a relatively robust preservation of traditional ecological knowledge when compared to other Alpine areas. This resilience is attributed to the area's geographic marginality, the socio-economic aftermath of the textile industry's collapse, and the strength of local traditions such as home gardening and communal land use.

Conclusion: Wild plant foraging remains a living tradition in Biella, marked by both persistence and adaptation. The findings underscore the dynamic nature of ethnobotanical knowledge and its potential role in sustainability, food security, and cultural heritage preservation amid rural and peri-urban change.

背景:本研究探讨了意大利皮埃蒙特比耶拉(Biella, Piedmont)过去55年来野生植物觅食方式的连续性和转变。目的是评估文化、经济和环境变化如何影响当地的民族植物学知识和实践,使用1970年的调查作为比较的基线。与15名当地线人一起进行了民族植物学实地调查,以记录目前野生植物用于食品和草药茶的情况。结果:将82个物种的数据集与93个物种的历史记录进行比较,以确定连续性、丧失和创新的模式。出现了三种主要模式:(1)某些传统的觅食植物的消失,不是由于生态缺失,而主要是由于社会经济变化,如畜牧业的衰落和与山地环境的日常互动的丧失;(2)与生活方式和土地利用的演变有关的、在定居点附近生长的物种出现了新的觅食方式;(3)与其他高寒地区相比,传统生态知识的保存相对较好。这种恢复力归因于该地区的地理边缘,纺织业崩溃的社会经济后果,以及当地传统的力量,如家庭园艺和公共土地使用。结论:野生植物觅食仍然是比耶拉的一种生活传统,具有持久性和适应性。研究结果强调了民族植物学知识的动态性质及其在农村和城郊变化中的可持续性、粮食安全和文化遗产保护方面的潜在作用。
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引用次数: 0
Fluridone stimulates in vitro seed germination of a rare hardy terrestrial orchid (Platanthera leucophaea). 氟立酮刺激一种罕见的耐寒陆生兰花(Platanthera leucophaea)的体外种子萌发。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-10-30 DOI: 10.1186/s40529-025-00484-w
Rachel E Helmich, Lawrence W Zettler, Caleb J Dvorak, Susanne DiSalvo

Background: Seeds of temperate terrestrial (hardy) orchids are considered more difficult to germinate compared to their tropical epiphytic counterparts, presumably because they have higher levels of abscisic acid (ABA) in their seed coats which prevents seeds from germinating prematurely during winter dormancy. In nature, ABA is gradually broken down (stripped) by natural weathering, triggering germination. This process can be shortened artificially, however, by using chemical bleaching agents and cold-moist stratification with mixed results. In this study, we explored the use of fluridoneto break seed dormancy in a hardy orchid native to North America, Platanthera leucophaea (Nutt.) Lindl. This organic compound (IUPAC name: 1-methyl-3-phenyl-5-[3-(trifluoromethyl) phenyl] pyridin-4(1H)-one) is a commercial herbicide that inhibits ABA biosynthesis. We added fluridone directly to agar media prior to seed sowing in vitro. Both symbiotic and asymbiotic germination techniques were applied that involved two different agar media, with and without added fluridone. Symbiotic germination was carried out using standard oatmeal agar inoculated with a mycorrhizal fungus (Ceratobasidium), whereas asymbiotic treatments utilized P723 agar medium.

Results: Seedling development within some of the replicate plates progressed to Stage 3 in all treatments, but development was marked in all asymbiotic plates containing fluridone leading to leaf elongation, 385 days after sowing.

Conclusions: As an herbicide, fluridone's use as a media additive to propagate a rare photosynthetic orchid seems counterintuitive, but its use in vitro to stimulate seedling development has the potential to benefit conservation efforts for this and possibly other hardy orchid species.

背景:温带陆生(耐寒)兰花的种子被认为比热带附生兰花更难发芽,可能是因为它们的种皮中有更高水平的脱落酸(ABA),这可以防止种子在冬季休眠期间过早发芽。在自然界中,ABA被自然风化逐渐分解(剥离),触发萌发。然而,这一过程可以通过使用化学漂白剂和冷湿分层来人为地缩短。在这项研究中,我们探索了使用氟酮来打破一种原产于北美的耐寒兰花的种子休眠,Platanthera leucophaea (Nutt.)。采用。这种有机化合物(IUPAC名称:1-甲基-3-苯基-5-[3-(三氟甲基)苯基]吡啶-4(1H)- 1)是一种抑制ABA生物合成的商业除草剂。在离体播种前,我们将氟立酮直接添加到琼脂培养基中。采用了两种不同的琼脂培养基,加氟立酮和不加氟立酮的共生和非共生发芽技术。共生萌发使用接种菌根真菌(Ceratobasidium)的标准燕麦琼脂进行,而非共生处理使用P723琼脂培养基。结果:在所有处理中,一些重复板内的幼苗发育进展到第3阶段,但在所有含有氟啶酮的非共生板中,播种后385天,幼苗发育明显,导致叶片伸长。结论:作为一种除草剂,氟啶酮作为一种培养基添加剂用于繁殖一种稀有的光合兰花似乎是违反直觉的,但在体外使用氟啶酮来刺激幼苗发育有可能有利于保护这种和其他耐寒兰花物种。
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引用次数: 0
Novel biostimulants-mediate tolerance to drought stress in Phaseolus vulgaris plants by optimizing osmoprotectants and antioxidant defense systems. 新型生物刺激素:通过优化渗透保护剂和抗氧化防御系统介导菜豆植物对干旱胁迫的耐受性。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-10-20 DOI: 10.1186/s40529-025-00483-x
Hussein E E Belal, Amr Elkelish, Mohamed M Zaid, Abdulrahman Alhudhaibi, Mohamed S A El-Roby, Yasmine H Abd Elmohsen, Amany H A Abeed, Celestin Ukozehasi, Mostafa M Rady, Ali A S Sayed

Background: Drought stress is a major constraint to the growth and productivity of Phaseolus vulgaris, particularly in dry regions. Utilizing natural biostimulants offers an eco-friendly approach to enhancing drought tolerance by modulating plant physio-biochemical responses. This study investigates the effectiveness of diluted lemon fruit juice (DLFJ) and diluted bee honey (DBH) as foliar biostimulants to mitigate drought-induced stress in P. vulgaris under two irrigation regimes: full (100% ETc) and deficit irrigation (60% ETc).

Results: Both DLFJ and DBH treatments significantly enhanced photosynthetic efficiency, relative water content (RWC), membrane stability index (MSI), osmoprotectant levels, antioxidant activity, and nutrient accumulation under drought conditions. Among all treatments (4% and 8% DBH, and 3% and 6% DLFJ), DBH-4% was the most effective. It significantly increased chlorophyll and carotenoid contents, photosynthetic efficiency, leaf integrity (RWC and MSI), osmoprotectant levels, antioxidant activities, and green pod yield under 60% ETc compared to untreated controls. It also markedly reduced oxidative stress markers (e.g., malondialdehyde and hydrogen peroxide) and further boosted enzyme activities, including superoxide dismutase, catalase, ascorbate peroxidase, and glutathione reductase.

Conclusions: These findings demonstrate that DBH-4% is a promising and sustainable biostimulant for improving drought resilience in P. vulgaris. Its rich content of antioxidants and osmoprotectants confers significant physiological and agronomic gains under water-limited conditions.

背景:干旱胁迫是制约菜豆(Phaseolus vulgaris)生长和生产力的主要因素,特别是在干旱地区。利用天然生物刺激剂提供了一种生态友好的方法,通过调节植物的生理生化反应来提高抗旱性。本研究研究了稀释柠檬汁(DLFJ)和稀释蜜蜂蜂蜜(DBH)作为叶面生物刺激剂在两种灌溉制度下的效果:充分灌溉(100% ETc)和亏缺灌溉(60% ETc)。结果:DLFJ和DBH处理均显著提高了干旱条件下植物的光合效率、相对含水量(RWC)、膜稳定性指数(MSI)、渗透保护剂水平、抗氧化活性和养分积累。在所有处理(4%和8% DBH, 3%和6% DLFJ)中,DBH-4%最有效。与未经处理的对照相比,叶绿素和类胡萝卜素含量、光合效率、叶片完整性(RWC和MSI)、渗透保护剂水平、抗氧化活性和60% ETc以下的绿豆荚产量显著提高。它还显著降低了氧化应激标志物(如丙二醛和过氧化氢),并进一步提高了酶活性,包括超氧化物歧化酶、过氧化氢酶、抗坏血酸过氧化物酶和谷胱甘肽还原酶。结论:DBH-4%是一种有前景的、可持续的生物刺激素,可提高紫荆的抗旱性。其丰富的抗氧化剂和渗透保护剂的含量赋予显著的生理和农艺收益在水限制条件下。
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引用次数: 0
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Botanical Studies
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