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Impact of incomplete lineage sorting and natural selection on the phylogenetic and taxonomic uncertainties of Aspidistra in Taiwan. 不完全谱系分选与自然选择对台湾蜘蛛种系统发育与分类不确定性的影响。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-10-15 DOI: 10.1186/s40529-025-00482-y
Min-Xin Luo, Ming-Jen Yang, Chang-Tse Lu, Pei-Chun Liao

Background: The inconsistency between morphological and genetic evidence has consistently presented a challenge in taxonomy. The genus Aspidistra (Asparagaceae) comprises perennial herbs found primarily in eastern and southeastern Asia. This group has received limited systematic study despite the continuous publications of new species in recent years. Most species of Aspidistra have narrow distributions, and a large number of them are endemic. This study examined five Aspidistra species in Taiwan, which are part of a total of around 200 Aspidistra species found throughout Asia. In this study, we sampled all Aspidistra taxa in Taiwan to explore their phylogenetic relationships. We utilized transcriptome data for phylogenetic reconstruction and employed gene genealogy interrogation (GGI) to identify conflicts between gene trees and the species tree. Additionally, we tested nine evolutionary scenarios for these taxa by incorporating population-level genetic data. We obtained a well-supported species tree but also detected a high proportion of incomplete lineage sorting (ILS) phenomena.

Results: The results revealed that the two varieties of A. daibuensis failed to form monophyly despite morphological similarities. However, about 20.8% of the genes did not reject the topology that grouped them together. Among these genes, we identified positive signals in photosynthesis-related genes, suggesting their similarities arose from convergent evolution. Furthermore, we used a phylogenetic signal test to identify the evolutionary meaningful traits and found that the stigma width can reflect the phylogenetic relationships among these species.

Conclusions: Our study provides new insights into the evolutionary dynamics and taxonomy of Aspidistra in Taiwan, revealing key genetic and morphological patterns shaping species divergence. Phylogenetic analysis revealed substantial ILS, with numerous genes supporting alternative tree topologies. Despite morphological similarities, A. daibuensis var. daibuensis and var. longkiauensis exhibit non-monophyletic relationships, challenging their previous classification. Genes associated with chloroplastic function and photomorphogenic adaptation suggest convergent evolution. Moreover, stigma shape emerges as a robust diagnostic trait for species delimitation. These findings underscore the complex interplay of genetics, morphology, and adaptation, emphasizing the need for further integrative research.

背景:形态学和遗传学证据的不一致性一直是分类学研究的难点。芦笋属(天门冬科)由多年生草本植物组成,主要分布在东亚和东南亚。尽管近年来不断有新种发表,但这一类群的系统研究有限。大多数种分布狭窄,大量为特有种。本研究调查了台湾的五种蜘蛛,它们是整个亚洲约200种蜘蛛的一部分。本研究以台湾所有蛛形目为研究对象,探讨其系统发育关系。我们利用转录组数据进行系统发育重建,并利用基因谱系查询(GGI)来识别基因树与物种树之间的冲突。此外,通过结合种群水平的遗传数据,我们测试了这些分类群的9种进化情景。我们得到了一个支持良好的物种树,但也检测到高比例的不完全谱系分类(ILS)现象。结果:两个品种虽然形态相似,但未能形成单系。然而,大约20.8%的基因没有拒绝将它们组合在一起的拓扑结构。在这些基因中,我们发现了光合作用相关基因的阳性信号,表明它们的相似性源于趋同进化。此外,我们利用系统发育信号检验来鉴定有进化意义的性状,发现柱头宽度可以反映这些物种之间的系统发育关系。结论:本研究为台湾蜘蛛的进化动态和分类提供了新的见解,揭示了形成物种分化的关键遗传和形态模式。系统发育分析揭示了大量的ILS,许多基因支持替代树拓扑结构。尽管形态相似,但daibuensis var. daibuensis和var. longkiauensis表现出非单系关系,挑战了它们之前的分类。与叶绿体功能和光形态形成适应相关的基因表明趋同进化。此外,柱头形状作为一种可靠的物种划分诊断特征出现。这些发现强调了遗传、形态和适应的复杂相互作用,强调了进一步综合研究的必要性。
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引用次数: 0
Floral scents, cozy shelter, and edible spathes: brood-site weevil pollination in Stenospermation weberbaueri (Araceae). 花香,舒适的庇护,和可食用的路径:天南星科小孢子草的巢地象鼻虫授粉。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-10-10 DOI: 10.1186/s40529-025-00468-w
Luna Ibáñez, Eliana Álvarez-Valdez, Artur Campos Dália Maia, Luis Alberto Núñez-Avellaneda, Gonzalo Taborda-Ocampo, Alejandro Zuluaga-Trochez, Natalia Castaño-Rubiano

Background and objectives: Araceae family is known for its entomophilous reproductive strategies, involving olfactory-driven pollinator attraction and diverse floral rewards. In the Neotropics, genera with unisexually-flowered inflorescences, feature short anthesis and intense thermogenesis, while those with bisexual flowers typically have longer anthesis and varied strategies. However, Monsteroideae, with short anthesis, remains an exception and is underexplored. This study focuses on the floral morphology, pollination ecology, and reproductive strategies of Stenospermation weberbaueri to enhance understanding of Neotropical aroid dynamics.

Material and methods: A natural population of S. weberbaueri was investigated in the Colombian Andes. Detailed examinations of inflorescence morphology, floral development and population phenology were conducted. Over a 1-year period, flowering and fruiting phenology were recorded, the reproductive system was assessed through controlled pollination experiments, and spadix temperatures were monitored during anthesis. Floral scent samples were collected and characterized using headspace and Gas Chromatography coupled to Mass Spectrometry methods, while pollen morphology and its position on floral visitor's body were described using scanning electron microscopy. Attractiveness assays with baited traps were employed to attract scent-oriented floral visitors.

Key results: The reproductive sequence of S. weberbaueri consists of six stages over 50 days. Anthesis, lasting three days, involves thermogenesis, spathe movements, floral chamber formation, and scent emission to attract and retain visitors. Temperature increases are synchronized with flowering, peaking at 5.4-7.2 °C above ambient during the male phase of anthesis. We identified 3-pentanol as a novel floral scent component in Araceae, which attracts Cyclanthura sp., the primary pollinators of S. weberbaueri. Controlled pollination experiments confirmed that S. weberbaueri cannot self-pollinate or undergo apomixis. We make the first report of brood-site pollination mutualism in Stenospermation and in the subfamily Monsteroideae.

Conclusions: This is the first comprehensive account of the pollination biology of genera Stenospermation, indicating a mutual dependence between S. weberbaueri and Cyclanthura sp., with weevils serving as pollen vectors and laying eggs on deciduous spathes. This BSPM in aroids, involving ectophagous and detritivorous larvae, highlights the complex interplay of floral traits-centered on long-range olfactory signals combined with putative visual and thermal signals-to attract specialized pollinators.

背景与目的:天南星科以其昆虫繁殖策略而闻名,包括嗅觉驱动的传粉者吸引和多样化的花奖励。在新热带地区,单性花序属的花期短,生热作用强,而双性花属的花期长,策略多样。然而,具有短花期的Monsteroideae仍然是一个例外,尚未得到充分的研究。本研究主要从植物的花形态、传粉生态学和繁殖策略等方面进行研究,以期加深对新热带植物的了解。材料与方法:对位于哥伦比亚安第斯山脉的一个自然种群进行了调查。对其花序形态、花发育和种群物候进行了详细的研究。在1年的时间里,记录了开花和结果物候,通过对照授粉试验评估了生殖系统,并监测了花期花粉的温度。利用顶空气色谱和气相色谱-质谱联用技术对花香样品进行了分析,并利用扫描电镜对花粉形态及其在访花蝇身上的位置进行了描述。采用诱捕饵引诱法,吸引有香味的访花者。关键结果:韦氏沙蚕的繁殖顺序在50天内分为6个阶段。花期持续三天,包括产热、花苞运动、花室形成和气味释放,以吸引和留住游客。温度的升高与开花同步,在花期雄花期温度最高,高于环境温度5.4-7.2℃。我们发现3-戊醇是天南星科植物中一种新的花香成分,它能吸引黄花楸的主要传粉者环花楸。对照传粉实验证实,黄花楸不能自花授粉,也不能无融合。本文首次报道了小孢子囊植物和小孢子囊亚科的亲本授粉互作现象。结论:本文首次全面阐述了窄孢属的传粉生物学,表明了S. weberbaueri和Cyclanthura sp.之间的相互依赖关系,象鼻虫作为花粉载体并在落叶通道上产卵。这种昆虫的BSPM,包括异食和食性幼虫,突出了花性状的复杂相互作用——以远程嗅觉信号为中心,结合假定的视觉和热信号——以吸引专门的传粉者。
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引用次数: 0
Novel inducible nitric oxide synthase-inhibiting cytochalasins from an oyster-derived fungus Westerdykella dispersa Ca4-13: structural insights and molecular docking analysis. 从一种牡蛎来源的真菌Westerdykella扩散Ca4-13中提取的新型诱导型一氧化氮合酶抑制细胞弛缓素:结构见解和分子对接分析。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-10-07 DOI: 10.1186/s40529-025-00481-z
Shu-Jung Huang, Su-Jung Hsu, Shih-Wei Wang, Yi-Chien Liu, Cheng-Yan Jiang, George Hsiao, Tzong-Huei Lee

Background: Marine-derived microorganisms are renowned for producing structurally diverse secondary metabolites with notable biological activities, serving as a promising reservoir for pharmaceutical development. In this study, the fungal strain Westerdykella dispersa Ca4-13, isolated from the edible oyster Crassostrea angulata, was investigated for its potential anti-inflammatory and cytoprotective properties using BV-2 microglial cells as a model system.

Results: Metabolite profiling of the solid-state fermented products of W. dispersa Ca4-13 yielded seven compounds 1-7. Their structures were elucidated using NMR and MS techniques, revealing three previously undescribed cytochalasins, namely westerchalasin A (1), westerchalasin B (2), and westerchalasin C (3), along with four known compounds 4-7. Among these, westerchalasin B (2) and westerchalasin C (3) significantly exhibited nitric oxide (NO) production production in LPS-stimulated BV-2 microglial cells, with IC₅₀ values of 11.1 ± 0.4 and 9.9 ± 0.4 µM, respectively. Western blot analysis demonstrated that compounds 2 and 3 significantly downregulated inducible nitric oxide synthase (iNOS) expression at a concentration of 20 µM. Moreover, molecular docking analysis revealed that compound 3 exhibited a high binding affinity for iNOS synthase (ΔG = -18.8104 kcal/mol). The strong interaction was attributed to of hydrogen bonds between the catalytic residue Arg375 and the C-18 carbonyl group of the cycloundecene moiety, as well as Pi-alkyl interactions with Trp367, which contributed to enhanced stability of the complex.

Conclusions: This study reported the isolation and structural elucidation of three novel cytochalasins 1-3 from W. dispersa Ca4-13. Notably, compounds 2 and 3 demonstrated anti-inflammatory activity by inhibiting NO production and iNOS expression in LPS-stimulated BV-2 microglial cells. Molecular docking analysis further confirmed strong interactions between compound 3 and key iNOS residues. Given the crucial role of neuroinflammation in neurodegenerative disorders, these findings suggested that compounds 2 and 3 may possess dual neuroprotective properties, warranting further exploration for therapeutic applications.

背景:海洋微生物以产生结构多样的次生代谢物而闻名,具有显著的生物活性,是药物开发的一个有前途的储层。本研究以食用牡蛎角牡蛎(Crassostrea angulata)中分离的真菌Westerdykella分散菌Ca4-13为研究对象,以BV-2小胶质细胞为模型系统,研究其潜在的抗炎和细胞保护作用。结果:W. dispera Ca4-13固态发酵产物的代谢谱分析得到7个化合物1-7。利用核磁共振和质谱技术对它们的结构进行了鉴定,发现了三种先前未被描述的细胞松弛素,即westerchalasin A(1)、westerchalasin B(2)和westerchalasin C(3),以及四种已知化合物4-7。其中,westerchalasin B(2)和westerchalasin C(3)在lps刺激的BV-2小胶质细胞中显着表现出一氧化氮(NO)的产生,IC₅₀值分别为11.1±0.4和9.9±0.4µM。Western blot分析表明,化合物2和3在浓度为20µM时显著下调诱导型一氧化氮合酶(iNOS)的表达。此外,分子对接分析表明,化合物3对iNOS合酶具有较高的结合亲和力(ΔG = -18.8104 kcal/mol)。催化残渣Arg375与环十烯部分的C-18羰基之间的氢键以及与Trp367之间的pi -烷基相互作用增强了配合物的稳定性。结论:本研究报道了3个新的细胞松弛素1-3的分离和结构解析。值得注意的是,化合物2和3通过抑制lps刺激的BV-2小胶质细胞中NO的产生和iNOS的表达而显示出抗炎活性。分子对接分析进一步证实了化合物3与关键iNOS残基之间的强相互作用。鉴于神经炎症在神经退行性疾病中的重要作用,这些发现表明化合物2和3可能具有双重神经保护特性,值得进一步探索治疗应用。
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引用次数: 0
Reproductive barriers in Serapias x kelleri. 小红花的生殖障碍。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-09-30 DOI: 10.1186/s40529-025-00477-9
Francesco Carlomagno, Giuseppe Pellegrino

Background: Understanding the reproductive barriers in natural plant hybrids is fundamental for comprehending mechanisms of speciation and evolutionary divergence. Most studies focus on reproductive barriers and gene exchange material between parental species, whereas fewer emphasize the biological significance of hybrid viability and their ability to interbreed with each other or with the parental species. To address this gap, the present study focuses on the hybrid Serapias x kelleri and its parental species, Serapias vomeracea and Serapias cordigera to evaluate reproductive success and the role of prezygotic and postzygotic barriers. Specifically, the purpose of this study was to investigate and evaluate the reproductive success, the biological and evolutionary implications of Serapias x kelleri, in terms of fruit production and seeds produced through hand pollination of any possible bidirectional cross combinations between hybrid plants and both parental species.

Results: Controlled manual crosses between hybrids and parental species to assess fruit and viable seed production were conducted. Results revealed no prezygotic barriers, as all pollinated flowers formed fruit. However, postzygotic barriers were evident, with significant variability in viable seed production. Hybrid self-crosses showed the lowest seed viability (0.6%), indicating strong postzygotic isolation and possible inbreeding depression. Crosses between hybrids and parental species exhibited a variable embryo production, with average values ​​ranging from 5,6% to 29,1%. Remarkable is the fact that when the hybrid acts as a pollen donor, the percentage of viable seeds with embryos is higher, with average values ​​ranging from 18.9% to 29.1%. Opposite, when the hybrid receives pollen from one of the parental species, the values ​​of viable seeds decrease dramatically, with averages that do not exceed 10%. These data clearly show an asymmetric reproductive capacity of the hybrid, with significantly higher success when acting as the pollen parent compared to the maternal parent.

Conclusions: This study emphasizes the critical role of reproductive barriers in maintaining species integrity within the Serapias genus. Natural hybrids such as S. x kelleri can facilitate gene flow between parental species. However, strong postzygotic barriers significantly limit their fertility, thereby driving evolutionary divergence and preserving the genetic identity of each species. These barriers consequently reduce the likelihood of speciation.

背景:了解天然植物杂交种的生殖障碍是理解物种形成和进化分化机制的基础。大多数研究集中在亲本种之间的生殖障碍和基因交换物质上,而很少强调杂种生存能力及其与亲本种或彼此杂交的能力的生物学意义。为了解决这一问题,本研究以杂交小鳞鳞虾及其亲本小鳞虾(Serapias vomeracea)和cordigera小鳞虾为研究对象,评估其繁殖成功率以及合子前和合子后屏障的作用。具体而言,本研究的目的是调查和评估塞拉皮(Serapias x kelleri)的生殖成功率、生物学和进化意义,以及杂交植物与亲本物种之间任何可能的双向杂交组合通过手传粉产生的果实和种子。结果:进行了杂种与亲本间的人工对照杂交,以评价其果实和活种产量。结果显示,所有授粉的花都结了果,不存在前合子障碍。然而,合子后的屏障是明显的,在有活力的种子生产中有显著的差异。杂种自交的种子活力最低(0.6%),表明合子后分离性强,可能存在近交抑制。杂种与亲本杂交的胚率变化较大,平均值在5.6% ~ 29.1%之间。值得注意的是,当杂交种作为花粉供体时,具有胚胎的活籽百分比更高,平均为18.9%至29.1%。相反,当杂交种接受来自亲本种之一的花粉时,可活种子的值急剧下降,平均不超过10%。这些数据清楚地显示了杂种的不对称繁殖能力,作为花粉亲本的成功率明显高于母本。结论:本研究强调了生殖屏障在维持沙鳞属物种完整性中的重要作用。天然杂交种(如s.x kelleri)可以促进亲本种之间的基因流动。然而,强大的合子后屏障极大地限制了它们的生育能力,从而推动了进化分歧并保持了每个物种的遗传特性。因此,这些障碍降低了物种形成的可能性。
{"title":"Reproductive barriers in Serapias x kelleri.","authors":"Francesco Carlomagno, Giuseppe Pellegrino","doi":"10.1186/s40529-025-00477-9","DOIUrl":"10.1186/s40529-025-00477-9","url":null,"abstract":"<p><strong>Background: </strong>Understanding the reproductive barriers in natural plant hybrids is fundamental for comprehending mechanisms of speciation and evolutionary divergence. Most studies focus on reproductive barriers and gene exchange material between parental species, whereas fewer emphasize the biological significance of hybrid viability and their ability to interbreed with each other or with the parental species. To address this gap, the present study focuses on the hybrid Serapias x kelleri and its parental species, Serapias vomeracea and Serapias cordigera to evaluate reproductive success and the role of prezygotic and postzygotic barriers. Specifically, the purpose of this study was to investigate and evaluate the reproductive success, the biological and evolutionary implications of Serapias x kelleri, in terms of fruit production and seeds produced through hand pollination of any possible bidirectional cross combinations between hybrid plants and both parental species.</p><p><strong>Results: </strong>Controlled manual crosses between hybrids and parental species to assess fruit and viable seed production were conducted. Results revealed no prezygotic barriers, as all pollinated flowers formed fruit. However, postzygotic barriers were evident, with significant variability in viable seed production. Hybrid self-crosses showed the lowest seed viability (0.6%), indicating strong postzygotic isolation and possible inbreeding depression. Crosses between hybrids and parental species exhibited a variable embryo production, with average values ​​ranging from 5,6% to 29,1%. Remarkable is the fact that when the hybrid acts as a pollen donor, the percentage of viable seeds with embryos is higher, with average values ​​ranging from 18.9% to 29.1%. Opposite, when the hybrid receives pollen from one of the parental species, the values ​​of viable seeds decrease dramatically, with averages that do not exceed 10%. These data clearly show an asymmetric reproductive capacity of the hybrid, with significantly higher success when acting as the pollen parent compared to the maternal parent.</p><p><strong>Conclusions: </strong>This study emphasizes the critical role of reproductive barriers in maintaining species integrity within the Serapias genus. Natural hybrids such as S. x kelleri can facilitate gene flow between parental species. However, strong postzygotic barriers significantly limit their fertility, thereby driving evolutionary divergence and preserving the genetic identity of each species. These barriers consequently reduce the likelihood of speciation.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":"66 1","pages":"32"},"PeriodicalIF":3.1,"publicationDate":"2025-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12484518/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145198288","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Margins of adaptation at the desert frontier: genetic responses of Ammopiptanthus mongolicus in arid northwestern China. 荒漠边缘的适应边缘:西北干旱地区蒙古沙蓬的遗传响应。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-09-29 DOI: 10.1186/s40529-025-00476-w
Yong-Zhi Yang, De-Ming Gao, Pei-Wei Sun, Chong-Yi Ke, Qihui Fong, Min-Xin Luo, Run-Hong Gao, Pei-Chun Liao

Background: Understanding plant adaptation to extreme environments is crucial for conservation and evolutionary biology. Ammopiptanthus mongolicus, a drought-resistant evergreen shrub native to northwestern China, provides an excellent model for studying genetic and ecological responses to arid conditions. Climatic fluctuations, especially during the Quaternary, have shaped its distribution and genetic diversity, influencing its ability to survive in desert environments. However, the mechanisms underlying its adaptation remain insufficiently explored.

Main body: We synthesize findings from previous genomic, ecological, and biogeographical studies to evaluate the adaptive mechanisms of A. mongolicus and assess the conservation implications for desert plant populations. Northwestern China encompasses vast arid regions characterized by extreme environmental conditions, including low precipitation, high evaporation rates, and significant temperature fluctuations. The uplift of the Qinghai-Tibet Plateau increased aridity by blocking moist air, leading to the transformation of humid forests into drought-resistant deserts. Ammopiptanthus mongolicus, a broad-leaved evergreen shrub, serves as a model for studying plant adaptation to arid environments. Genomic studies have identified several genes and pathways associated with drought and cold adaptation in this species. Core populations of A. mongolicus inhabit stable environments and exhibit high genetic diversity, whereas marginal populations endure extreme conditions and show strong local adaptations and distinct genetic traits. In this review, we hypothesize that the geographical distribution of core and peripheral populations may shift in response to future climate change, with peripheral populations potentially serving as sources of adaptive alleles for extreme climatic conditions.

Conclusions: Marginal populations of A. mongolicus are essential reservoirs of adaptive traits, providing genetic resources for coping with environmental stressors such as drought and cold. However, they face a higher risk of local extinction due to genetic load and habitat fragmentation. Gene flow between core and marginal populations may be crucial for maintaining genetic diversity and adaptive potential. Conservation strategies should prioritize protecting marginal populations to reduce genetic load, enhance resilience, and preserve genetic diversity in response to intensifying climate change.

背景:了解植物对极端环境的适应对保护和进化生物学至关重要。摘要蒙古Ammopiptanthus mongolicus是中国西北地区的一种抗旱常绿灌木,为研究干旱条件下的遗传和生态响应提供了一个很好的模型。气候波动,特别是第四纪的气候波动,塑造了其分布和遗传多样性,影响了其在沙漠环境中生存的能力。然而,其适应机制仍未得到充分探讨。摘要:本文综合基因组学、生态学和生物地理学的研究成果,对沙冬青的适应机制和对荒漠植物种群的保护意义进行了探讨。中国西北辽阔的干旱地区以极端的环境条件为特征,包括低降水、高蒸发速率和显著的温度波动。摘要常绿阔叶灌木沙冬青(Ammopiptanthus mongolicus)是研究植物适应干旱环境的典型植物。基因组研究已经确定了该物种与干旱和寒冷适应相关的几个基因和途径。蒙古冬虫夏草核心居群生存环境稳定,遗传多样性高,边缘居群生存环境极端,地方适应性强,遗传特征明显。在这篇综述中,我们假设核心种群和边缘种群的地理分布可能会随着未来气候变化而发生变化,边缘种群可能成为极端气候条件下适应性等位基因的来源。结论:蒙古沙冬虫夏草的边缘种群是适应性状的重要储存库,为蒙古沙冬虫夏草应对干旱、寒冷等环境胁迫提供了遗传资源。然而,由于遗传负荷和栖息地破碎化,它们面临着更高的局部灭绝风险。核心种群和边缘种群之间的基因流动可能对维持遗传多样性和适应潜力至关重要。保护策略应优先保护边缘种群,以减少遗传负荷,增强适应能力,保护遗传多样性,以应对日益加剧的气候变化。
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引用次数: 0
Effects of plant growth regulators on Orobanche coerulescens seed germination. 植物生长调节剂对玉米种子萌发的影响。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-09-29 DOI: 10.1186/s40529-025-00479-7
Yu-Hsuan Wang, Kuan-Hung Lin, Yu-Hsin Tseng, Cung-I Chen, Chang-Chang Chen, Ching-Wen Wang, Meng-Yuan Huang
{"title":"Effects of plant growth regulators on Orobanche coerulescens seed germination.","authors":"Yu-Hsuan Wang, Kuan-Hung Lin, Yu-Hsin Tseng, Cung-I Chen, Chang-Chang Chen, Ching-Wen Wang, Meng-Yuan Huang","doi":"10.1186/s40529-025-00479-7","DOIUrl":"10.1186/s40529-025-00479-7","url":null,"abstract":"","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":"66 1","pages":"30"},"PeriodicalIF":3.1,"publicationDate":"2025-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12480180/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145184658","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Anti-ageing and attenuating cognitive declines of Dicliptera chinensis extracts and purified compounds in vitro and in scopolamine-induced cognitive dysfunction mice. 东莨菪碱诱导的认知功能障碍小鼠的抗衰老和认知功能减退作用。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-09-29 DOI: 10.1186/s40529-025-00478-8
Yi-Yan Sie, Mei-Hsien Lee, Wen-Chi Hou

Background: The cognitive decline is one of the age-associated physical dysfunctions and also found in Alzheimer's disease (AD). The whole plants of Dicliptera chinensis (L.) Nees (DC) are belonged to edible materials as fresh vegetables, and dried DC powders as tea materials or used as folk medicines for clearing heat and removing toxic substance in Taiwan. However, DC extracts and the active compounds on anti-ageing and attenuating cognitive declines are not clear.

Results: The dried powders of the whole DC plants are extracted with 95% ethanol to get DC-95EE. The DC-95EE is partitioned in sequences to get ethyl acetate fraction, butanol fraction (BuOH fraction), and water faction. Two flavone C-glycosides (vicenin II and schaftoside) are purified from the BuOH fraction. It is found that the pre-treatments of DC-95EE, BuOH fraction, and vicenin II and schaftoside show to elevate cell viabilities, reduce the senescence-associated β-galactosidase (SAβG) activity and intracellular reactive oxygen species (ROS) levels in galactose-treated SH-SY5Y neuronal cell models. The pre-treatments of vicenin II or schaftoside also show to lower ageing-associated p16 and p21 gene expressions and enhance SIRT-1 gene expressions in galactose-treated SH-SY5Y cells. The DC-95EE, vicenin II, and schaftoside show dose-dependent anti-acetylcholinesterase activities. The oral administrations of DC-95EE (200 mg/kg) and purified schaftoside (25 and 50 mg/kg) daily for 7 days ameliorate cognitive declines in scopolamine-induced ICR mice evaluated by Morris water maze. The quantification of vicenin II and schaftoside, respectively, account for 2.53% and 8.17% of DC-95EE by HPLC quantifications, which may be active compounds in the DC-95EE for anti-ageing activities.

Conclusion: The DC-95EE exhibit anti-ageing in neuron cell models and attenuate cognitive declines in mice models, which may be potentials in developing functional foods for anti-ageing purposes and need further investigations.

背景:认知能力下降是与年龄相关的身体功能障碍之一,在阿尔茨海默病(AD)中也有发现。中国双翅目(diliptera chinensis, L.)在台湾,树属新鲜蔬菜食用材料,干燥的树粉作为茶叶原料或用作清热解毒的民间药物。然而,DC提取物及其抗衰老和减缓认知能力下降的活性成分尚不清楚。结果:用95%乙醇提取全株DC- 95ee干粉。将DC-95EE按顺序拆分得到乙酸乙酯馏分、丁醇馏分(BuOH馏分)和水馏分。两种黄酮c -苷(vicenin II和schaftoside)从BuOH部分纯化。结果表明,DC-95EE、BuOH组分、vicenin II和schaftoside预处理可提高半乳糖处理的SH-SY5Y神经元细胞的细胞活力,降低衰老相关β-半乳糖苷酶(SAβG)活性和细胞内活性氧(ROS)水平。在半乳糖处理的SH-SY5Y细胞中,vicenin II或schaftoside预处理也可以降低衰老相关的p16和p21基因的表达,并提高sit -1基因的表达。DC-95EE、vicenin II和schaftoside的抗乙酰胆碱酯酶活性呈剂量依赖性。Morris水迷宫评价,DC-95EE (200 mg/kg)和纯化谷草苷(25和50 mg/kg)每天口服7天,可改善东莨菪碱诱导的ICR小鼠的认知功能下降。通过HPLC定量分析,DC-95EE中vicenin II和schaftoside分别占总含量的2.53%和8.17%,可能是DC-95EE中具有抗衰老活性的活性化合物。结论:DC-95EE在神经元细胞模型中具有抗衰老作用,在小鼠模型中具有减轻认知能力下降的作用,具有开发抗衰老功能食品的潜力,有待进一步研究。
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引用次数: 0
From biophysical interaction to structural modeling: bi-terminal G and TGS domains drive rice OsYchF1-OsGAP1 complex formation. 从生物物理相互作用到结构建模:双端G和TGS结构域驱动水稻OsYchF1-OsGAP1复合物的形成
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-09-29 DOI: 10.1186/s40529-025-00480-0
Suchang Huang, Ziting Wu, Kuang Wang, Yunchuan Liao, Jiaqiang Zeng, Rui Miao
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引用次数: 0
Identification of hotspots of crop wild relatives in Germany to promote their in situ conservation in a network of genetic reserves. 确定德国作物野生近缘种质资源热点,促进其在遗传保护网络中的原位保护。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-09-02 DOI: 10.1186/s40529-025-00473-z
Maria Bönisch, Vera Senße, Thomas Engst, Alica Sander, Diethart Matthies, Eckhard Jedicke, Nadine Bernhardt

Background: Crop wild relatives (CWR) represent a valuable resource for ensuring food security. Although they are negatively affected by the loss of habitats due to climate change and land use change, they are underrepresented in conservation programmes. The establishment of genetic reserve (GR) networks has been put forward as an approach to protect CWR. The objective of this study was to identify CWR hotspots in Germany, which are suitable candidates for the establishment of GRs. CWR observation data were collected on a national scale from various sources and a hotspot analysis was performed to identify potential GR sites. A number of these sites were visited and the plant species occurring were recorded.

Results: 76 GR candidate sites were identified. The sites are distributed across the biogeographic regions of Germany and could conserve 73% of all CWR and 85% of the CWR that were assigned a conservation priority for Germany. Our on-site surveys for 27 GR candidates found discrepancies between the species records available and the species currently occurring.

Conclusions: We propose five hectares as an appropriate size for GRs, as such an area can be monitored and the number of stakeholders involved is usually low. The discrepancies concerning species records highlight the need for more frequent, regular nationwide CWR monitoring as a prerequisite for their conservation. Our results further suggest that GRs should also be set up outside of protected areas to protect CWR efficiently.

背景:作物野生近缘种(CWR)是保障粮食安全的宝贵资源。虽然它们受到气候变化和土地利用变化造成的栖息地丧失的负面影响,但它们在保护方案中的代表性不足。建立遗传保护区(GR)网络是保护CWR的有效途径。本研究的目的是确定德国的CWR热点,这些热点是建立GRs的合适候选者。在全国范围内收集了不同来源的CWR观测数据,并进行了热点分析,以确定潜在的GR站点。对其中一些地点进行了考察,并记录了发生的植物种类。结果:共鉴定出76个GR候选位点。这些地点分布在德国的生物地理区域,可以保护73%的CWR和85%的德国优先保护的CWR。我们对27个候选物种进行了现场调查,发现现有物种记录与目前发生的物种之间存在差异。结论:我们建议5公顷作为GRs的合适规模,因为这样的面积可以监测,而且涉及的利益相关者数量通常很低。有关物种记录的差异突出了需要更频繁,定期的全国范围内的CWR监测,作为保护它们的先决条件。我们的研究结果进一步表明,为了有效地保护CWR,还应在保护区外建立GRs。
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引用次数: 0
Twenty-nine new host records of powdery mildew fungi (Erysiphaceae) in Taiwan with an updated checklist. 台湾白粉病真菌29份新寄主记录及更新清单。
IF 3.1 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2025-08-25 DOI: 10.1186/s40529-025-00471-1
Yu-Wei Yeh, Meike Piepenbring, Roland Kirschner

Background: Powdery mildews (Erysiphaceae, Ascomycota) belong to the most important plant pathogenic fungi that cause stress to forest and fruit trees and lead to a considerable loss of economic crops worldwide as well as in Taiwan. The checklist of Erysiphaceae in Taiwan is an important basis to control these pathogens. However, it has been published 25 years ago without any updating, while taxonomic concepts of genera and species changed and many new fungus and host records have been published. We update the checklist of Erysiphaceae by applying new taxonomical concepts and we add several new host records worldwide or for Taiwan based on own, recent collections.

Results: The updated checklist of powdery mildew in Taiwan is presented including data on 13 species of Erysiphaceae on 28 species of host plants. Doubtful records are marked as such and proposed for further investigation. For agricultural application, information on the usage of host plants was added to the checklist. Besides, over twenty specimens of Erysiphaceae on common plants in Taiwan recently collected by the authors were identified based on ITS sequences and anamorphic morphology. Among the collections, twelve represented new host records worldwide, while seventeen were new host records for Taiwan. Six species of Erysiphaceae were found in Taiwan for the first time.

Conclusions: The checklist of Erysiphaceae in Taiwan is an important basis for taxonomic and biogeographical studies as well as for quarantine sanctions referring to powdery mildews. Our results reveal that the host spectra of these pathogens are still incompletely known worldwide. Moreover, the list includes some doubtful old records that might be synonyms or wrong identifications. Morphological characteristics and ITS sequences are usually useful for the identification of Erysiphaceae. Several species in certain genera, however, cannot be distinguished since the variation in sequence data of those closely related species is quite low. New collections and re-investigation of old specimens are imperative to clarify some doubtful records.

背景:白粉病(Erysiphaceae, Ascomycota)是最重要的植物病原真菌,对森林和果树造成胁迫,并导致全球和台湾经济作物的大量损失。台湾地区丹参科植物名录是防治丹参科病原菌的重要依据。然而,它已经出版25年了,没有任何更新,而属和种的分类概念发生了变化,并发表了许多新的真菌和宿主记录。我们采用新的分类概念更新了丹参科的清单,并根据自己最近的收藏增加了一些新的世界或台湾的寄主记录。结果:更新了台湾地区的白粉病名录,收录了28种寄主植物上13种丹毒科白粉病的资料。可疑的记录被标记为这样,并建议进一步调查。在农业应用方面,清单中增加了寄主植物使用情况的信息。此外,作者还收集了20余份台湾常见植物丹参科植物标本,利用ITS序列和变形形态学对其进行了鉴定。其中12项为全球新主机纪录,17项为台湾新主机纪录。台湾首次发现丹参科植物6种。结论:台湾地区丹参科植物名录是开展白粉病分类学、生物地理学研究和检疫制裁的重要依据。我们的结果表明,这些病原体的宿主谱在世界范围内仍然不完全清楚。此外,该列表包括一些可疑的旧记录,可能是同义词或错误的标识。形态学特征和ITS序列通常是鉴别丹参科植物的重要依据。然而,某些属中有几个种无法区分,因为这些密切相关的物种序列数据的变化很低。为了澄清一些可疑的记录,新的标本收集和对旧标本的重新调查是必要的。
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Botanical Studies
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