Pub Date : 2024-01-04DOI: 10.1186/s40529-023-00408-6
K P Sahana, Arpita Srivastava, Anil Khar, Neelu Jain, P K Jain, Hemlata Bharti, Mohd Harun, Manisha Mangal
Background: Traditional breeding methods have long been employed worldwide for the evaluation and development of pepper cultivars. However, these methods necessitate multiple generations of screening, line development, evaluation, recognition, and crossing to obtain highly homozygous lines. In contrast, in vitro anther-derived microspore culture represents a rapid method to generate homozygous lines within a single generation. In the present study, we have optimized a protocol for microspore embryogenesis from anther cultures of pepper hybrids Orobelle and Bomby.
Results: We achieved early and successful embryo formation from both genotypes by subjecting the buds to a cold pretreatment at 4 °C for 4 days. Our optimized culture medium, comprised of MS medium supplemented with 4 mg/L NAA, 1 mg/L BAP, 0.25% activated charcoal, 2.6 g/L gelrite, 30 g/L sucrose, and 15 mg/L silver nitrate, exhibited the highest efficiency in embryo formation (1.85% and 1.46%) for Orobelle and Bomby, respectively. Furthermore, successful plant regeneration from the anther derived microspore embryos was accomplished using half-strength MS medium fortified with 2% sucrose and 0.1 mg/L 6-benzylaminopurine (BA), solidified with 2.6 g/L gelrite. The ploidy status of the microspore-derived plantlets was analyzed using flow cytometry technique. Notably, the haploid plants exhibited distinct characteristics such as reduced plant height, leaf length, leaf width, and shorter internode length when compared to their diploid counterparts derived from seeds.
Conclusion: Our findings highlight the potential of anther culture and microspore embryogenesis as an advanced method for accelerating pepper breeding programs, enabling the rapid production of superior homozygous lines.
{"title":"Anther-derived microspore embryogenesis in pepper hybrids orobelle and Bomby.","authors":"K P Sahana, Arpita Srivastava, Anil Khar, Neelu Jain, P K Jain, Hemlata Bharti, Mohd Harun, Manisha Mangal","doi":"10.1186/s40529-023-00408-6","DOIUrl":"10.1186/s40529-023-00408-6","url":null,"abstract":"<p><strong>Background: </strong>Traditional breeding methods have long been employed worldwide for the evaluation and development of pepper cultivars. However, these methods necessitate multiple generations of screening, line development, evaluation, recognition, and crossing to obtain highly homozygous lines. In contrast, in vitro anther-derived microspore culture represents a rapid method to generate homozygous lines within a single generation. In the present study, we have optimized a protocol for microspore embryogenesis from anther cultures of pepper hybrids Orobelle and Bomby.</p><p><strong>Results: </strong>We achieved early and successful embryo formation from both genotypes by subjecting the buds to a cold pretreatment at 4 °C for 4 days. Our optimized culture medium, comprised of MS medium supplemented with 4 mg/L NAA, 1 mg/L BAP, 0.25% activated charcoal, 2.6 g/L gelrite, 30 g/L sucrose, and 15 mg/L silver nitrate, exhibited the highest efficiency in embryo formation (1.85% and 1.46%) for Orobelle and Bomby, respectively. Furthermore, successful plant regeneration from the anther derived microspore embryos was accomplished using half-strength MS medium fortified with 2% sucrose and 0.1 mg/L 6-benzylaminopurine (BA), solidified with 2.6 g/L gelrite. The ploidy status of the microspore-derived plantlets was analyzed using flow cytometry technique. Notably, the haploid plants exhibited distinct characteristics such as reduced plant height, leaf length, leaf width, and shorter internode length when compared to their diploid counterparts derived from seeds.</p><p><strong>Conclusion: </strong>Our findings highlight the potential of anther culture and microspore embryogenesis as an advanced method for accelerating pepper breeding programs, enabling the rapid production of superior homozygous lines.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-01-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10766580/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139085879","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-11-30DOI: 10.1186/s40529-023-00406-8
Chia-Hao Chang, George Hsiao, Shih-Wei Wang, Juei-Yu Yen, Shu-Jung Huang, Wei-Chiung Chi, Tzong-Huei Lee
Background: Endophytic fungi have proven to be a rich source of novel natural products with a wide-array of biological activities and higher levels of structural diversity.
Results: Chemical investigation on the liquid- and solid-state fermented products of Chaetomium globosum Km1226 isolated from the littoral medicinal herb Atriplex maximowicziana Makino resulted in the isolation of compounds 1-14. Their structures were determined by spectroscopic analysis as three previously undescribed C13-polyketides, namely aureonitol C (1), mollipilins G (2), and H (3), along with eleven known compounds 4-14. Among these, mollipilin A (5) exhibited significant nitric oxide production inhibitory activity in LPS-induced BV-2 microglial cells with an IC50 value of 0.7 ± 0.1 µM, and chaetoglobosin D (10) displayed potent anti-angiogenesis property in human endothelial progenitor cells (EPCs) with an IC50 value of 0.8 ± 0.3 µM.
Conclusions: Three previously unreported compounds 1-3 were isolated and identified. Mollipilin A (5) and chaetoglobosin D (10) could possibly be developed as anti-inflammatory and anti-angiogenic lead drugs, respectively.
{"title":"Chemical constituents from the medicinal herb-derived fungus Chaetomium globosum Km1226.","authors":"Chia-Hao Chang, George Hsiao, Shih-Wei Wang, Juei-Yu Yen, Shu-Jung Huang, Wei-Chiung Chi, Tzong-Huei Lee","doi":"10.1186/s40529-023-00406-8","DOIUrl":"https://doi.org/10.1186/s40529-023-00406-8","url":null,"abstract":"<p><strong>Background: </strong>Endophytic fungi have proven to be a rich source of novel natural products with a wide-array of biological activities and higher levels of structural diversity.</p><p><strong>Results: </strong>Chemical investigation on the liquid- and solid-state fermented products of Chaetomium globosum Km1226 isolated from the littoral medicinal herb Atriplex maximowicziana Makino resulted in the isolation of compounds 1-14. Their structures were determined by spectroscopic analysis as three previously undescribed C<sub>13</sub>-polyketides, namely aureonitol C (1), mollipilins G (2), and H (3), along with eleven known compounds 4-14. Among these, mollipilin A (5) exhibited significant nitric oxide production inhibitory activity in LPS-induced BV-2 microglial cells with an IC<sub>50</sub> value of 0.7 ± 0.1 µM, and chaetoglobosin D (10) displayed potent anti-angiogenesis property in human endothelial progenitor cells (EPCs) with an IC<sub>50</sub> value of 0.8 ± 0.3 µM.</p><p><strong>Conclusions: </strong>Three previously unreported compounds 1-3 were isolated and identified. Mollipilin A (5) and chaetoglobosin D (10) could possibly be developed as anti-inflammatory and anti-angiogenic lead drugs, respectively.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2023-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10686906/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138457919","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-11-29DOI: 10.1186/s40529-023-00405-9
Juan Qiu, Musen Lin, Dunyan Tan
Background: Leaf morphology and epidermal characters are important for phylogenetic and taxonomic studies of many plants, but there is currently insufficient data to use them to help distinguish species of Gagea, which is a taxonomically difficult genus mainly due to polyploidy and hybridization. Therefore, leaf morphology and epidermal characters of Gagea were studied to assess the characters that can be used to elucidate the taxonomy and systematics of 14 species of Gagea collected in Xinjiang, China. Using light microscopy (LM), six qualitative and three quantitative leaf epidermal anatomical characters were examined for both the adaxial and abaxial surfaces. Hierarchical cluster analysis (HCA) was employed to reveal the similarities based on leaf morphology and epidermal characters of the investigated species.
Results: Basal leaf of these species can be terete or flat, and it is triangle, flat, or circular in transverse section. Anticlinal wall patterns of the leaf epidermal cells were straight and sinuous, and only three species had epidermal hairs. Shape of long cells varies, ranging from quadrangular to irregular. HCA revealed that the 14 species could be divided into two groups. Group A was arranged into three subgroups (A1, A2 and A3), based on the Euclidean distance of 6.96. Subgroup A1 consisted of three species with indumentum; subgroup A2 had four species with sinuous type anticlinal walls; and subgroup A3 comprised of two species with a fistulose basal leaf. Group B included five species with short cells.
Conclusions: Leaf morphology and epidermal characters did not differ significantly among populations of the same species in Gagea, whereas they differ significantly among species. Thus, leaf morphology and epidermal characters provide diagnostic information for differentiating G. nigra and G. filiformis; G. altaica, G. jensii and G. alberti, which are morphologically similar species.
背景:叶片形态和表皮特征对许多植物的系统发育和分类研究具有重要意义,但目前没有足够的数据来利用它们来帮助区分Gagea属,这是一个分类困难的属,主要是由于多倍体和杂交。为此,本文对新疆地区14种盖亚属植物的叶片形态和表皮特征进行了研究,以确定其分类和系统特征。利用光镜(LM)对叶片正面和背面的6个定性解剖特征和3个定量解剖特征进行了研究。采用层次聚类分析(HCA)揭示了不同树种叶片形态和表皮特征的相似性。结果:基叶呈圆柱状或扁平状,横切面呈三角形、扁平或圆形。叶表皮细胞背斜壁型直而弯曲,仅有3种有表皮毛。长细胞的形状各异,从四边形到不规则。HCA显示,这14个物种可以分为两类。根据欧几里得距离为6.96,将A组分为A1、A2、A3三个亚组。A1亚群有3种具被毛;A2亚群有4种弯曲型背斜壁;A3亚群由两个种组成,具有具纤维的基叶。B组包括5种短细胞。结论:盖亚属同一种居群间叶片形态和表皮性状差异不显著,但种间差异显著。因此,叶片形态和表皮特征为区分黑毛茅和丝状毛茅提供了诊断信息;G. altaica, G. jensii和G. alberti是形态相似的物种。
{"title":"Taxonomic implications of leaf morphology and epidermal anatomy for 14 species of Gagea (Liliaceae) from Xinjiang, China.","authors":"Juan Qiu, Musen Lin, Dunyan Tan","doi":"10.1186/s40529-023-00405-9","DOIUrl":"10.1186/s40529-023-00405-9","url":null,"abstract":"<p><strong>Background: </strong>Leaf morphology and epidermal characters are important for phylogenetic and taxonomic studies of many plants, but there is currently insufficient data to use them to help distinguish species of Gagea, which is a taxonomically difficult genus mainly due to polyploidy and hybridization. Therefore, leaf morphology and epidermal characters of Gagea were studied to assess the characters that can be used to elucidate the taxonomy and systematics of 14 species of Gagea collected in Xinjiang, China. Using light microscopy (LM), six qualitative and three quantitative leaf epidermal anatomical characters were examined for both the adaxial and abaxial surfaces. Hierarchical cluster analysis (HCA) was employed to reveal the similarities based on leaf morphology and epidermal characters of the investigated species.</p><p><strong>Results: </strong>Basal leaf of these species can be terete or flat, and it is triangle, flat, or circular in transverse section. Anticlinal wall patterns of the leaf epidermal cells were straight and sinuous, and only three species had epidermal hairs. Shape of long cells varies, ranging from quadrangular to irregular. HCA revealed that the 14 species could be divided into two groups. Group A was arranged into three subgroups (A1, A2 and A3), based on the Euclidean distance of 6.96. Subgroup A1 consisted of three species with indumentum; subgroup A2 had four species with sinuous type anticlinal walls; and subgroup A3 comprised of two species with a fistulose basal leaf. Group B included five species with short cells.</p><p><strong>Conclusions: </strong>Leaf morphology and epidermal characters did not differ significantly among populations of the same species in Gagea, whereas they differ significantly among species. Thus, leaf morphology and epidermal characters provide diagnostic information for differentiating G. nigra and G. filiformis; G. altaica, G. jensii and G. alberti, which are morphologically similar species.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2023-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10684841/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138450897","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-11-14DOI: 10.1186/s40529-023-00404-w
Liliane E Petrini
Background: Morphology, hosts, and collecting sites of fungi assessed from herbarium material of special interest deserve to be brought to the attention of mycologists.
Results: Specimens of Lopadostoma and Oligostoma deposited at ZT are briefly described and listed to expand the knowledge about their distribution. Three yet unmentioned Rosellinia collections are reported. One could be identified as R. mastoidiformis, a second as R. neblina; both are known only from the type collections. The third one seems to be a yet undescribed taxon and is formally described as R. schueppii.
Conclusions: These observations emphasize the importance of keeping fungal collections and highlight the importance of field work and contributions by early mycologists.
{"title":"Lopadostoma, Oligostoma, and some Rosellinia specimens from the herbarium of the Swiss Federal Institute of Technology (ZT): the value of early fieldwork and the importance of keeping fungal collections.","authors":"Liliane E Petrini","doi":"10.1186/s40529-023-00404-w","DOIUrl":"10.1186/s40529-023-00404-w","url":null,"abstract":"<p><strong>Background: </strong>Morphology, hosts, and collecting sites of fungi assessed from herbarium material of special interest deserve to be brought to the attention of mycologists.</p><p><strong>Results: </strong>Specimens of Lopadostoma and Oligostoma deposited at ZT are briefly described and listed to expand the knowledge about their distribution. Three yet unmentioned Rosellinia collections are reported. One could be identified as R. mastoidiformis, a second as R. neblina; both are known only from the type collections. The third one seems to be a yet undescribed taxon and is formally described as R. schueppii.</p><p><strong>Conclusions: </strong>These observations emphasize the importance of keeping fungal collections and highlight the importance of field work and contributions by early mycologists.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2023-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10645784/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"92152742","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-28DOI: 10.1186/s40529-023-00397-6
Jacques Fournier, Huei-Mei Hsieh, Christian Lechat, Yu-Ming Ju, Delphine Chaduli, Anne Favel
Background: The genus Camillea was created in 1849 from collections made in French Guiana with eight species included. Numerous species assigned to Camillea were subsequently discovered, especially in the forests of the Amazon basin, but new discoveries have not been reported from French Guiana since 1849. Recent fieldwork in French Guiana has begun to fill this gap by identifying five new species, most of which were collected in the vicinity of Saül village.
Results: Based on macro- and micromorphological study of their stromata, including SEM images of ascospore wall ornamentation, five new species were recognized, including C. cribellum, C. heterostomoides, C. nitida, C. rogersii and C. saulensis. Cultures could be obtained for C. heterostomoides and C. rogersii, and ITS and LSU sequences were obtained for all of the five new species. Camillea heterostoma and its variety microspora were shown to be conspecific. Provisional molecular phylogenetic analyses support the possible reinstatement of Hypoxylon melanaspis, currently regarded as merely an applanate form of C. leprieurii.
Conclusion: The current study is based on a relatively limited fieldwork in its duration and sampling area but was able to substantially increase the number of Camillea species known from French Guiana. This augurs an exceptional and still unknown diversity of the genus in this area and by extension in the adjacent neotropical forests.
{"title":"Five new Camillea (Xylariales) species described from French Guiana.","authors":"Jacques Fournier, Huei-Mei Hsieh, Christian Lechat, Yu-Ming Ju, Delphine Chaduli, Anne Favel","doi":"10.1186/s40529-023-00397-6","DOIUrl":"10.1186/s40529-023-00397-6","url":null,"abstract":"<p><strong>Background: </strong>The genus Camillea was created in 1849 from collections made in French Guiana with eight species included. Numerous species assigned to Camillea were subsequently discovered, especially in the forests of the Amazon basin, but new discoveries have not been reported from French Guiana since 1849. Recent fieldwork in French Guiana has begun to fill this gap by identifying five new species, most of which were collected in the vicinity of Saül village.</p><p><strong>Results: </strong>Based on macro- and micromorphological study of their stromata, including SEM images of ascospore wall ornamentation, five new species were recognized, including C. cribellum, C. heterostomoides, C. nitida, C. rogersii and C. saulensis. Cultures could be obtained for C. heterostomoides and C. rogersii, and ITS and LSU sequences were obtained for all of the five new species. Camillea heterostoma and its variety microspora were shown to be conspecific. Provisional molecular phylogenetic analyses support the possible reinstatement of Hypoxylon melanaspis, currently regarded as merely an applanate form of C. leprieurii.</p><p><strong>Conclusion: </strong>The current study is based on a relatively limited fieldwork in its duration and sampling area but was able to substantially increase the number of Camillea species known from French Guiana. This augurs an exceptional and still unknown diversity of the genus in this area and by extension in the adjacent neotropical forests.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2023-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10611695/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"61560942","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-25DOI: 10.1186/s40529-023-00403-x
Nickolas N Rajtar, Joshua C Kielsmeier-Cook, Benjamin W Held, Cristina E Toapanta-Alban, Maria E Ordonez, Charles W Barnes, Robert A Blanchette
Background: Xylaria is a diverse and ecologically important genus in the Ascomycota. This paper describes the xylariaceous fungi present in an Ecuadorian Amazon Rainforest and investigates the decay potential of selected Xylaria species. Fungi were collected at Yasuní National Park, Ecuador during two collection trips to a single hectare plot divided into a 10-m by 10-m grid, providing 121 collection points. All Xylaria fruiting bodies found within a 1.2-m radius of each grid point were collected. Dried fruiting bodies were used for culturing and the internal transcribed spacer region was sequenced to identify Xylaria samples to species level. Agar microcosms were used to assess the decay potential of three selected species, two unknown species referred to as Xylaria 1 and Xylaria 2 and Xylaria curta, on four different types of wood from trees growing in Ecuador including balsa (Ochroma pyramidale), melina (Gmelina arborea), saman (Samanea saman), and moral (Chlorophora tinctoria). ANOVA and post-hoc comparisons were used to test for differences in biomass lost between wood blocks inoculated with Xylaria and uninoculated control blocks. Scanning electron micrographs of transverse sections of each wood and assay fungus were used to assess the type of degradation present.
Results: 210 Xylaria collections were sequenced, with 106 collections belonging to 60 taxa that were unknown species, all with less than 97% match to NCBI reference sequences. Xylaria with sequence matches of 97% or greater included X. aff. comosa (28 isolates), X. cuneata (9 isolates) X. curta and X. oligotoma (7 isolates), and X. apiculta (6 isolates)., All Xylaria species tested were able to cause type 1 or type 2 soft rot degradation in the four wood types and significant biomass loss was observed compared to the uninoculated controls. Balsa and melina woods had the greatest amount of biomass loss, with as much as 60% and 25% lost, respectively, compared to the controls.
Conclusions: Xylaria species were found in extraordinary abundance in the Ecuadorian rainforest studied. Our study demonstrated that the Xylaria species tested can cause a soft rot type of wood decay and with the significant amount of biomass loss that occurred within a short incubation time, it indicates these fungi likely play a significant role in nutrient cycling in the Amazonian rainforest.
{"title":"Diverse Xylaria in the Ecuadorian Amazon and their mode of wood degradation.","authors":"Nickolas N Rajtar, Joshua C Kielsmeier-Cook, Benjamin W Held, Cristina E Toapanta-Alban, Maria E Ordonez, Charles W Barnes, Robert A Blanchette","doi":"10.1186/s40529-023-00403-x","DOIUrl":"10.1186/s40529-023-00403-x","url":null,"abstract":"<p><strong>Background: </strong>Xylaria is a diverse and ecologically important genus in the Ascomycota. This paper describes the xylariaceous fungi present in an Ecuadorian Amazon Rainforest and investigates the decay potential of selected Xylaria species. Fungi were collected at Yasuní National Park, Ecuador during two collection trips to a single hectare plot divided into a 10-m by 10-m grid, providing 121 collection points. All Xylaria fruiting bodies found within a 1.2-m radius of each grid point were collected. Dried fruiting bodies were used for culturing and the internal transcribed spacer region was sequenced to identify Xylaria samples to species level. Agar microcosms were used to assess the decay potential of three selected species, two unknown species referred to as Xylaria 1 and Xylaria 2 and Xylaria curta, on four different types of wood from trees growing in Ecuador including balsa (Ochroma pyramidale), melina (Gmelina arborea), saman (Samanea saman), and moral (Chlorophora tinctoria). ANOVA and post-hoc comparisons were used to test for differences in biomass lost between wood blocks inoculated with Xylaria and uninoculated control blocks. Scanning electron micrographs of transverse sections of each wood and assay fungus were used to assess the type of degradation present.</p><p><strong>Results: </strong>210 Xylaria collections were sequenced, with 106 collections belonging to 60 taxa that were unknown species, all with less than 97% match to NCBI reference sequences. Xylaria with sequence matches of 97% or greater included X. aff. comosa (28 isolates), X. cuneata (9 isolates) X. curta and X. oligotoma (7 isolates), and X. apiculta (6 isolates)., All Xylaria species tested were able to cause type 1 or type 2 soft rot degradation in the four wood types and significant biomass loss was observed compared to the uninoculated controls. Balsa and melina woods had the greatest amount of biomass loss, with as much as 60% and 25% lost, respectively, compared to the controls.</p><p><strong>Conclusions: </strong>Xylaria species were found in extraordinary abundance in the Ecuadorian rainforest studied. Our study demonstrated that the Xylaria species tested can cause a soft rot type of wood decay and with the significant amount of biomass loss that occurred within a short incubation time, it indicates these fungi likely play a significant role in nutrient cycling in the Amazonian rainforest.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2023-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10600087/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"50156975","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-16DOI: 10.1186/s40529-023-00402-y
Seham M Hamed, Marwa Kamal, Nevein A S Messiha
Background: Ralstonia solanacearum causes potato brown rot disease, resulting in lower crop's production and quality. A sustainable and eco-friendly method for controlling the disease is required. Algae's bioactive chemicals have shown the potential to enhance plant defenses. For the first time, the efficacy of foliar application of Acanthophora spicifera and Spirulina platensis seaweed extracts, along with the utilization of dried algal biomasses (DABs) of Turbinaria ornata and a mixture of Caulerpa racemosa and Cystoseira myrica (1:1)on potato yield and brown rot suppression were investigated under field conditions. Field experiments were conducted in three locations: Location 1 (Kafr Shukr district, Kaliobeya governorate), Location 2 (Moneira district, Kaliobeya governorate), and Location 3 (Talia district, Minufyia governorate). Locations 1 and 2 were naturally infested with the pathogen, while location 3 was not. The study evaluated potato yield, plant nutritive status and antioxidants, soil available nitrogen-phosphorus-potassium (N-P-K), and organic matter percentage. Additionally, the shift in soil microbial diversity related to R. solanacearum suppression was examined for the most effective treatment.
Results: The results revealed that seaweed extracts significantly increased potato yield at all locations, which correlated with higher phosphorus absorption, while T. ornate DAB increased potato yield only at location 2, accompanied by noticeable increases in soil nitrogen and plant phosphorus. The mixed DABs of C. racemosa and C. myrica demonstrated greater disease suppression than foliar applications. The disease-suppressive effect of the mixed DABs was accompanied by significant increases in flavonoids and total antioxidant capacity (TAC). Moreover, the application of mixed DABs increased soil bacterial biodiversity, with a higher abundance of oligotrophic marine bacterial species such as Sphingopyxis alaskensis and growth-promoting species like Glutamicibacter arilaitensis, Promicromonospora sp., and Paenarthrobacter nitroguajacolicus in all three locations compared to the untreated control. Klebsiella sp., Pseudomonas putida, and P. brassicacearum abundances were increased by the mixed DABs in Location 1. These species were less abundant in locations 2 and 3, where Streptomyces sp., Bacillus sp., and Sphingobium vermicomposti were prevalent.
Conclusions: The results demonstrated that the used seaweed extracts improved potato yield and phosphorous absorption, while the mixed DABs potentially contributed in disease suppression and improved soil microbial diversity.
{"title":"Potential of algal-based products for the management of potato brown rot disease.","authors":"Seham M Hamed, Marwa Kamal, Nevein A S Messiha","doi":"10.1186/s40529-023-00402-y","DOIUrl":"10.1186/s40529-023-00402-y","url":null,"abstract":"<p><strong>Background: </strong>Ralstonia solanacearum causes potato brown rot disease, resulting in lower crop's production and quality. A sustainable and eco-friendly method for controlling the disease is required. Algae's bioactive chemicals have shown the potential to enhance plant defenses. For the first time, the efficacy of foliar application of Acanthophora spicifera and Spirulina platensis seaweed extracts, along with the utilization of dried algal biomasses (DABs) of Turbinaria ornata and a mixture of Caulerpa racemosa and Cystoseira myrica (1:1)on potato yield and brown rot suppression were investigated under field conditions. Field experiments were conducted in three locations: Location 1 (Kafr Shukr district, Kaliobeya governorate), Location 2 (Moneira district, Kaliobeya governorate), and Location 3 (Talia district, Minufyia governorate). Locations 1 and 2 were naturally infested with the pathogen, while location 3 was not. The study evaluated potato yield, plant nutritive status and antioxidants, soil available nitrogen-phosphorus-potassium (N-P-K), and organic matter percentage. Additionally, the shift in soil microbial diversity related to R. solanacearum suppression was examined for the most effective treatment.</p><p><strong>Results: </strong>The results revealed that seaweed extracts significantly increased potato yield at all locations, which correlated with higher phosphorus absorption, while T. ornate DAB increased potato yield only at location 2, accompanied by noticeable increases in soil nitrogen and plant phosphorus. The mixed DABs of C. racemosa and C. myrica demonstrated greater disease suppression than foliar applications. The disease-suppressive effect of the mixed DABs was accompanied by significant increases in flavonoids and total antioxidant capacity (TAC). Moreover, the application of mixed DABs increased soil bacterial biodiversity, with a higher abundance of oligotrophic marine bacterial species such as Sphingopyxis alaskensis and growth-promoting species like Glutamicibacter arilaitensis, Promicromonospora sp., and Paenarthrobacter nitroguajacolicus in all three locations compared to the untreated control. Klebsiella sp., Pseudomonas putida, and P. brassicacearum abundances were increased by the mixed DABs in Location 1. These species were less abundant in locations 2 and 3, where Streptomyces sp., Bacillus sp., and Sphingobium vermicomposti were prevalent.</p><p><strong>Conclusions: </strong>The results demonstrated that the used seaweed extracts improved potato yield and phosphorous absorption, while the mixed DABs potentially contributed in disease suppression and improved soil microbial diversity.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2023-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10579212/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41232378","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-09-28DOI: 10.1186/s40529-023-00401-z
Kai-Wei Juang, Chiou-Pin Chen
Background: The restoration of conventional tea plantations and the adoption of organic farming practices could impact soil organic carbon (SOC) and nitrogen (N) stocks. This study investigated the soil properties, SOC and N contents and stocks, and their vertical distributions of a secondary forest restored from an abandoned conventional tea plantation and a converted organic tea plantation. An adjacent conventional tea plantation employing similar intermediate farming served as a comparison.
Results: Within a 50-cm depth, the secondary forest exhibited a higher SOC stock of 115.53 ± 7.23 Mg C ha- 1 compared to 92.1 ± 8.54 Mg C ha- 1 for the conventional tea plantation. No significant differences in N stocks were seen between the two land uses. Significantly high SOC and N contents and stocks were found in the 0-10 cm layer of the secondary forest compared to the conventional tea plantation. No significant disparities in SOC and N stocks were found between the conventional and organic tea plantations within the 50 cm depth (92.1 ± 8.54 Mg C ha- 1 and 10.06 ± 1.01 Mg N ha- 1 vs. 97.47 ± 1.53 Mg C ha- 1 and 9.70 ± 0.10 Mg N ha- 1). However, higher levels of SOC and N contents and stocks were observed at a depth of 10 cm in the conventional tea plantation and below 10 cm in the organic tea plantation.
Conclusions: The C and N inputs derived from high litter production at the top soil strongly contributed to higher SOC and N contents and stocks in the secondary forest. The application of soybean amendments in the conventional tea plantation and the longer tea plantation age of the organic tea plantation influenced their distribution of SOC and N contents and stocks, respectively. Reverting a conventional tea plantation into a secondary forest contributed to C recovery and reaccumulation. The conventional tea plantation, employing similar intermediate farming practices, increased SOC and N contents and stocks in the surface soil compared to the organic tea plantation. However, adopting organic farming did not significantly increase SOC stocks compared to the conventional tea plantation.
背景:恢复传统茶园和采用有机农业做法可能会影响土壤有机碳(SOC)和氮(N)储量。本研究调查了废弃的传统茶园和改造后的有机茶园恢复的次生林的土壤性质、有机碳和氮含量、储量及其垂直分布。邻近的传统茶园采用了类似的中间农业作为比较。结果:在50 cm深度内,次生林表现出较高的SOC存量,为115.53 ± 7.23 Mg C ha- 1,而92.1 ± 8.54 Mg C ha- 1个用于传统茶园。两种土地利用之间的氮储量没有显著差异。与传统茶园相比,在0-10厘米的次生林层中发现了显著高的SOC和N含量和储量。在50 cm深度内,传统茶园和有机茶园的SOC和N储量没有显著差异(92.1 ± 8.54 Mg C ha- 1和10.06 ± 1.01 Mg N ha- 1对97.47 ± 1.53 Mg C ha- 1和9.70 ± 0.10 Mg N ha- 1) 。然而,在传统茶园中,在10cm深度处和有机茶园中,观察到较高水平的SOC、N含量和库存。结论:表层土壤高枯枝落叶产生的碳和氮输入对次生林SOC、N含量和蓄积量的增加有很大贡献。大豆改良剂在常规茶园中的应用和有机茶园中较长的茶园龄分别影响其SOC、N含量和库存的分布。将传统茶园恢复为次生林有助于碳的恢复和再积累。与有机茶园相比,采用类似中间耕作方式的传统茶园增加了表层土壤的有机碳、氮含量和储量。然而,与传统茶园相比,采用有机农业并没有显著增加SOC储量。
{"title":"Changes in soil organic carbon and nitrogen stocks in organic farming practice and abandoned tea plantation.","authors":"Kai-Wei Juang, Chiou-Pin Chen","doi":"10.1186/s40529-023-00401-z","DOIUrl":"10.1186/s40529-023-00401-z","url":null,"abstract":"<p><strong>Background: </strong>The restoration of conventional tea plantations and the adoption of organic farming practices could impact soil organic carbon (SOC) and nitrogen (N) stocks. This study investigated the soil properties, SOC and N contents and stocks, and their vertical distributions of a secondary forest restored from an abandoned conventional tea plantation and a converted organic tea plantation. An adjacent conventional tea plantation employing similar intermediate farming served as a comparison.</p><p><strong>Results: </strong>Within a 50-cm depth, the secondary forest exhibited a higher SOC stock of 115.53 ± 7.23 Mg C ha<sup>- 1</sup> compared to 92.1 ± 8.54 Mg C ha<sup>- 1</sup> for the conventional tea plantation. No significant differences in N stocks were seen between the two land uses. Significantly high SOC and N contents and stocks were found in the 0-10 cm layer of the secondary forest compared to the conventional tea plantation. No significant disparities in SOC and N stocks were found between the conventional and organic tea plantations within the 50 cm depth (92.1 ± 8.54 Mg C ha<sup>- 1</sup> and 10.06 ± 1.01 Mg N ha<sup>- 1</sup> vs. 97.47 ± 1.53 Mg C ha<sup>- 1</sup> and 9.70 ± 0.10 Mg N ha<sup>- 1</sup>). However, higher levels of SOC and N contents and stocks were observed at a depth of 10 cm in the conventional tea plantation and below 10 cm in the organic tea plantation.</p><p><strong>Conclusions: </strong>The C and N inputs derived from high litter production at the top soil strongly contributed to higher SOC and N contents and stocks in the secondary forest. The application of soybean amendments in the conventional tea plantation and the longer tea plantation age of the organic tea plantation influenced their distribution of SOC and N contents and stocks, respectively. Reverting a conventional tea plantation into a secondary forest contributed to C recovery and reaccumulation. The conventional tea plantation, employing similar intermediate farming practices, increased SOC and N contents and stocks in the surface soil compared to the organic tea plantation. However, adopting organic farming did not significantly increase SOC stocks compared to the conventional tea plantation.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2023-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10533459/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41092561","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-09-27DOI: 10.1186/s40529-023-00400-0
Yung-I Lee, Edward C Yeung
Orchid seeds are 'dust-like.' The seed coat is usually thin, with only one to a few cell layers. It originates from the integuments formed during ovule development. In orchids, the outer integument is primarily responsible for forming a mature seed coat. The inner integument usually fails to develop after fertilization, becomes compressed, and collapses over the expanding embryo. Hence, the seed coat is formed from the funiculus, chalaza, and outer integumentary cells. The outermost layer of the seed coat, the testa, is lignified, usually at the radial and inner tangential walls. The subepidermal thin-walled layer(s), the tegmen, subsequently cold, resulting in seeds having only a single layer of seed coat cells. In some species, cells of the inner integument remain alive with the ability to synthesize and accumulate lipidic and or phenolic compounds in their walls covering the embryo. This cover is called the 'carapace,' a protective shield contributing to the embryo's added protection. A developmental and functional perspective of the integuments and seed coat during seed development and germination is presented in this review.
{"title":"The orchid seed coat: a developmental and functional perspective.","authors":"Yung-I Lee, Edward C Yeung","doi":"10.1186/s40529-023-00400-0","DOIUrl":"10.1186/s40529-023-00400-0","url":null,"abstract":"<p><p>Orchid seeds are 'dust-like.' The seed coat is usually thin, with only one to a few cell layers. It originates from the integuments formed during ovule development. In orchids, the outer integument is primarily responsible for forming a mature seed coat. The inner integument usually fails to develop after fertilization, becomes compressed, and collapses over the expanding embryo. Hence, the seed coat is formed from the funiculus, chalaza, and outer integumentary cells. The outermost layer of the seed coat, the testa, is lignified, usually at the radial and inner tangential walls. The subepidermal thin-walled layer(s), the tegmen, subsequently cold, resulting in seeds having only a single layer of seed coat cells. In some species, cells of the inner integument remain alive with the ability to synthesize and accumulate lipidic and or phenolic compounds in their walls covering the embryo. This cover is called the 'carapace,' a protective shield contributing to the embryo's added protection. A developmental and functional perspective of the integuments and seed coat during seed development and germination is presented in this review.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2023-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10533777/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41123400","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-09-22DOI: 10.1186/s40529-023-00399-4
Po-Hao Chen, An-Ching Chung, Hung-Chih Lin, Sheng-Zehn Yang
Background: The climbing strategies of lianas and herbaceous vines influence climber competition abilities and survival. The aim of this study was to investigate the climbing strategies of each plant species and observe their organs of origin.
Results: The results showed that all Taiwan climbers were approximately 555 species, accounting for 11% of the native flora. Among the 555 climbers, the twining stem type was the most common, with a total of 255 species (46%), the remaining climbing methods accounted for 300 species. Approximately twenty one climbing methods, including nine combination types, were exhibited, of which the most common type was the twining stem, followed by simple scrambling and twining tendrils. Most species of Fabaceae and Apocynaceae were twining stems in dextrorse, excluding Wisteriopsis reticulata and Alyxia taiwanensis, which were in sinistrorse. The prehensile branch of Fissistigma genus, Ventilago genus, and Dalbergia benthamii, originated from second-order or modified stems. In the simple scrambling type, some climbers were covered spines and prickles to attach the host, and the others were clinging to the supports or creeping on the ground without speculation. The hooks or grapnels of the genus Uncaria are derived from the branches, and a pair of curved hooks or a spine of Artabotrys hexapetalus are originated from the inflorescence to tightly attach to a host. The Piper genus use adhesive roots to climb their hosts. Among the genus Trichosanthes, only Trichosanthes homophylla exhibits a combination of twining modified shoots and adhesive roots. Gentianales includes four families with seven climbing mechanisms, while Fabales includes only Fabaceae, which presents six climbing methods.
Conclusions: The twining tendrils had nine organs of origin in Taiwan climber, that these opinions of originated organs might be available to the studies of convergent evolution. The data presented herein provide crucial basic information of the climber habits types and origin structures, which are available for terms standardization to improve field investigation. The terminologies would aid in the establishment of climber habits as commonly taxon-specific and the combination of two climber habits could be a characteristic of taxonomic value.
{"title":"Climbing strategies of Taiwan climbers.","authors":"Po-Hao Chen, An-Ching Chung, Hung-Chih Lin, Sheng-Zehn Yang","doi":"10.1186/s40529-023-00399-4","DOIUrl":"10.1186/s40529-023-00399-4","url":null,"abstract":"<p><strong>Background: </strong>The climbing strategies of lianas and herbaceous vines influence climber competition abilities and survival. The aim of this study was to investigate the climbing strategies of each plant species and observe their organs of origin.</p><p><strong>Results: </strong>The results showed that all Taiwan climbers were approximately 555 species, accounting for 11% of the native flora. Among the 555 climbers, the twining stem type was the most common, with a total of 255 species (46%), the remaining climbing methods accounted for 300 species. Approximately twenty one climbing methods, including nine combination types, were exhibited, of which the most common type was the twining stem, followed by simple scrambling and twining tendrils. Most species of Fabaceae and Apocynaceae were twining stems in dextrorse, excluding Wisteriopsis reticulata and Alyxia taiwanensis, which were in sinistrorse. The prehensile branch of Fissistigma genus, Ventilago genus, and Dalbergia benthamii, originated from second-order or modified stems. In the simple scrambling type, some climbers were covered spines and prickles to attach the host, and the others were clinging to the supports or creeping on the ground without speculation. The hooks or grapnels of the genus Uncaria are derived from the branches, and a pair of curved hooks or a spine of Artabotrys hexapetalus are originated from the inflorescence to tightly attach to a host. The Piper genus use adhesive roots to climb their hosts. Among the genus Trichosanthes, only Trichosanthes homophylla exhibits a combination of twining modified shoots and adhesive roots. Gentianales includes four families with seven climbing mechanisms, while Fabales includes only Fabaceae, which presents six climbing methods.</p><p><strong>Conclusions: </strong>The twining tendrils had nine organs of origin in Taiwan climber, that these opinions of originated organs might be available to the studies of convergent evolution. The data presented herein provide crucial basic information of the climber habits types and origin structures, which are available for terms standardization to improve field investigation. The terminologies would aid in the establishment of climber habits as commonly taxon-specific and the combination of two climber habits could be a characteristic of taxonomic value.</p>","PeriodicalId":9185,"journal":{"name":"Botanical Studies","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2023-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10516820/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41108134","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}