The development of structurally controlled techniques inspired by the structural formation of living systems is of great importance for the fabrication of next-generation functional soft materials using environmentally friendly processes. This study aimed to investigate the formation mechanism of anisotropic structures of the gelatin network in a hydrogel through self-assembly on oriented templates. The effects of the oriented template having a uniaxially oriented surface on the anisotropic structure of the gelatin network were influenced by the structure at different scales: molecular (the secondary structure as the microstructure on the gelatin molecule) and molecular-assembled (the morphology of the gelatin network) scales. The mechanical properties and swelling behavior of the prepared gelatin hydrogels were characterized based on the anisotropic gelatin networks. The formation of an anisotropic gelatin network by self-assembly on the oriented template was presumably achieved by a two-step process due to the following two types of structural control factors: (1) the strength of the interaction between the template and gelatin molecules, and (2) the phase separation between the gelatin and water molecules induced during the hydrogelation process. The first process involves the formation of a thin molecular layer by the interaction between the template and gelatin molecules. The second process involves phase separation between the gelatin and water molecules during the cooling process of hydrogelation. These structurally controlled techniques for the formation of polymer networks inspired by biomineralization have two application prospects, which are the construction of biological tissue-like soft materials with complex hierarchical and anisotropic network structures through self-assembly processes, and expression of biological tissue-like functions.
{"title":"Formation mechanism of anisotropic gelatin hydrogel by self-assembly on oriented templates†","authors":"Kohei Kawaguchi, Tamaki Maeda, Syuuhei Komatsu, Yoshihiro Nomura and Kazuki Murai","doi":"10.1039/D4ME00023D","DOIUrl":"10.1039/D4ME00023D","url":null,"abstract":"<p >The development of structurally controlled techniques inspired by the structural formation of living systems is of great importance for the fabrication of next-generation functional soft materials using environmentally friendly processes. This study aimed to investigate the formation mechanism of anisotropic structures of the gelatin network in a hydrogel through self-assembly on oriented templates. The effects of the oriented template having a uniaxially oriented surface on the anisotropic structure of the gelatin network were influenced by the structure at different scales: molecular (the secondary structure as the microstructure on the gelatin molecule) and molecular-assembled (the morphology of the gelatin network) scales. The mechanical properties and swelling behavior of the prepared gelatin hydrogels were characterized based on the anisotropic gelatin networks. The formation of an anisotropic gelatin network by self-assembly on the oriented template was presumably achieved by a two-step process due to the following two types of structural control factors: (1) the strength of the interaction between the template and gelatin molecules, and (2) the phase separation between the gelatin and water molecules induced during the hydrogelation process. The first process involves the formation of a thin molecular layer by the interaction between the template and gelatin molecules. The second process involves phase separation between the gelatin and water molecules during the cooling process of hydrogelation. These structurally controlled techniques for the formation of polymer networks inspired by biomineralization have two application prospects, which are the construction of biological tissue-like soft materials with complex hierarchical and anisotropic network structures through self-assembly processes, and expression of biological tissue-like functions.</p>","PeriodicalId":91,"journal":{"name":"Molecular Systems Design & Engineering","volume":" 6","pages":" 561-570"},"PeriodicalIF":3.6,"publicationDate":"2024-03-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140124733","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Luke Dicks, David E. Graff, Kirk E. Jordan, Connor W. Coley and Edward O. Pyzer-Knapp
The story of machine learning in general, and its application to molecular design in particular, has been a tale of evolving representations of data. Understanding the implications of the use of a particular representation – including the existence of so-called ‘activity cliffs’ for cheminformatics models – is the key to their successful use for molecular discovery. In this work we present a physics-inspired methodology which exploits analogies between model response surfaces and energy landscapes to richly describe the relationship between the representation and the model. From these similarities, a metric emerges which is analogous to the commonly used frustration metric from the chemical physics community. This new property shows state-of-the-art prediction of model error, whilst belonging to a novel class of roughness measure that extends beyond the known data allowing the trivial identification of activity cliffs even in the absence of related training or evaluation data.
{"title":"A physics-inspired approach to the understanding of molecular representations and models","authors":"Luke Dicks, David E. Graff, Kirk E. Jordan, Connor W. Coley and Edward O. Pyzer-Knapp","doi":"10.1039/D3ME00189J","DOIUrl":"10.1039/D3ME00189J","url":null,"abstract":"<p >The story of machine learning in general, and its application to molecular design in particular, has been a tale of evolving representations of data. Understanding the implications of the use of a particular representation – including the existence of so-called ‘activity cliffs’ for cheminformatics models – is the key to their successful use for molecular discovery. In this work we present a physics-inspired methodology which exploits analogies between model response surfaces and energy landscapes to richly describe the relationship between the representation and the model. From these similarities, a metric emerges which is analogous to the commonly used frustration metric from the chemical physics community. This new property shows state-of-the-art prediction of model error, whilst belonging to a novel class of roughness measure that extends beyond the known data allowing the trivial identification of activity cliffs even in the absence of related training or evaluation data.</p>","PeriodicalId":91,"journal":{"name":"Molecular Systems Design & Engineering","volume":" 5","pages":" 449-455"},"PeriodicalIF":3.6,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2024/me/d3me00189j?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140009926","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ghasidit Pornnoppadol, Soojeong Cho, Jeong Heon Yu, Shin-Hyun Kim and Yoon Sung Nam
Photothermal cancer therapy has gained increasing attention as a minimally invasive treatment via the localized heating of photothermal agents to eradicate cancer cells. However, its clinical translation has been limited by insufficient photothermal conversion in the near-infrared (NIR) range and low tumor-targeting efficiency. Here, synthetic melanin-like nanoparticles (∼190 nm in diameter) decorated with a cluster of smaller gold nanoparticles (∼20 nm in diameter) are developed as efficient NIR photothermal agents for in vivo cancer treatment. The melanin-gold hybrid nanoparticles are prepared by the oxidative polymerization of dopamine into colloidal melanin-like nanoparticles, followed by the spontaneous reduction of gold ion precursors into plasmonic nanoparticles on the surface of melanin nanoparticles. The gold nanoparticles significantly increase the NIR light absorption and photothermal conversion of the melanin nanoparticles, making their overall photothermal performance superior to conventional gold nanorods. Chemical conjugation of epidermal growth factor to the hybrid nanoparticles facilitates their cellular internalization into lung adenocarcinoma cells and enables in vivo tumor-targeting in a xenograft mouse model. The nanoparticles also exhibit excellent dispersion stability in serum and maintain high photothermal efficiency even after extensive laser irradiation. Our results suggest that the electronic hybridization of melanin and gold nanostructures provides a new opportunity to fine-tune their optical and chemical properties for tumor-targeted photothermal therapy.
{"title":"Cancer-targeting gold-decorated melanin nanoparticles for in vivo near-infrared photothermal therapy†","authors":"Ghasidit Pornnoppadol, Soojeong Cho, Jeong Heon Yu, Shin-Hyun Kim and Yoon Sung Nam","doi":"10.1039/D3ME00173C","DOIUrl":"10.1039/D3ME00173C","url":null,"abstract":"<p >Photothermal cancer therapy has gained increasing attention as a minimally invasive treatment <em>via</em> the localized heating of photothermal agents to eradicate cancer cells. However, its clinical translation has been limited by insufficient photothermal conversion in the near-infrared (NIR) range and low tumor-targeting efficiency. Here, synthetic melanin-like nanoparticles (∼190 nm in diameter) decorated with a cluster of smaller gold nanoparticles (∼20 nm in diameter) are developed as efficient NIR photothermal agents for <em>in vivo</em> cancer treatment. The melanin-gold hybrid nanoparticles are prepared by the oxidative polymerization of dopamine into colloidal melanin-like nanoparticles, followed by the spontaneous reduction of gold ion precursors into plasmonic nanoparticles on the surface of melanin nanoparticles. The gold nanoparticles significantly increase the NIR light absorption and photothermal conversion of the melanin nanoparticles, making their overall photothermal performance superior to conventional gold nanorods. Chemical conjugation of epidermal growth factor to the hybrid nanoparticles facilitates their cellular internalization into lung adenocarcinoma cells and enables <em>in vivo</em> tumor-targeting in a xenograft mouse model. The nanoparticles also exhibit excellent dispersion stability in serum and maintain high photothermal efficiency even after extensive laser irradiation. Our results suggest that the electronic hybridization of melanin and gold nanostructures provides a new opportunity to fine-tune their optical and chemical properties for tumor-targeted photothermal therapy.</p>","PeriodicalId":91,"journal":{"name":"Molecular Systems Design & Engineering","volume":" 5","pages":" 507-517"},"PeriodicalIF":3.6,"publicationDate":"2024-02-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2024/me/d3me00173c?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140009925","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Andre Nicolai Petelski, Tamara Bundrea and Nélida María Peruchena
Cooperativity in hydrogen bonds can be crucial for the stabilization of supramolecular systems. In this contribution, we propose a simple covalent modification within a pyrazole-based trimeric rosette that significantly improves its binding strength. Using dispersion-corrected density functional theory, at the BLYP-D3(BJ)/6-311++(d,p) level, we show how an intramolecular hydrogen bond acts as a bridge between an electron-donating group and an electron-withdrawing group by moving the electron density from one group to the other one through the sigma electron system. This effect strongly enhances the inductive ability of the substituents, and further increases the synergy of the cyclic trimer.
{"title":"Augmentation of inductive effects through short range intramolecular hydrogen bonds for the improvement of cooperativity of trimeric rosettes†","authors":"Andre Nicolai Petelski, Tamara Bundrea and Nélida María Peruchena","doi":"10.1039/D4ME00008K","DOIUrl":"10.1039/D4ME00008K","url":null,"abstract":"<p >Cooperativity in hydrogen bonds can be crucial for the stabilization of supramolecular systems. In this contribution, we propose a simple covalent modification within a pyrazole-based trimeric rosette that significantly improves its binding strength. Using dispersion-corrected density functional theory, at the BLYP-D3(BJ)/6-311++(d,p) level, we show how an intramolecular hydrogen bond acts as a bridge between an electron-donating group and an electron-withdrawing group by moving the electron density from one group to the other one through the sigma electron system. This effect strongly enhances the inductive ability of the substituents, and further increases the synergy of the cyclic trimer.</p>","PeriodicalId":91,"journal":{"name":"Molecular Systems Design & Engineering","volume":" 4","pages":" 345-351"},"PeriodicalIF":3.6,"publicationDate":"2024-02-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139969031","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Chathumini Samarawickrama, Sebastian Pöhlker, Paul White, Ivan Cole and Patrick Keil
Atmospheric corrosion, an electrochemical phenomenon, initiates the degradation of materials, primarily metals, through their interaction with environmental droplets or aerosols. This degradation extends to various aspects such as material performance, longevity, and safety, emphasizing the critical need to comprehend and inhibit corrosion, particularly in industrial and environmental settings. Structural aluminum alloys, prominently used in aerospace, automotive, and marine industries, undergo extensive scrutiny due to their susceptibility to atmospheric corrosion. Nonetheless, the absence of suitable electrochemical techniques capable of accommodating droplet volumes underscores the urgent need for advancements in corrosion research. This paper introduces an innovative and efficient multielectrode cell setup aimed at rapid screening of droplet and thin film electrolyte volumes, presenting a new high-throughput screening method. Utilizing AA6014 as a substrate, this paper demonstrates a proof of concept for this methodology. It explores the influence of a crucial parameter, pH, while considering the effects of evaporation and secondary spreading. Various organic corrosion inhibitors, including some well-known inhibitors, were examined to evaluate the impact of chemically related structures on inhibition efficiency. This investigation predominately focuses on comparing and discussing differences and similarities in inhibition performance between bulk and droplet volumes. Ultimately, this comprehensive investigation aims to enhance the understanding and management of corrosion inhibition in droplet and thin film environments.
{"title":"Corrosion inhibitor screening for AA6014 aluminum alloy under different ambient conditions using a novel multielectrode methodology","authors":"Chathumini Samarawickrama, Sebastian Pöhlker, Paul White, Ivan Cole and Patrick Keil","doi":"10.1039/D4ME00013G","DOIUrl":"10.1039/D4ME00013G","url":null,"abstract":"<p >Atmospheric corrosion, an electrochemical phenomenon, initiates the degradation of materials, primarily metals, through their interaction with environmental droplets or aerosols. This degradation extends to various aspects such as material performance, longevity, and safety, emphasizing the critical need to comprehend and inhibit corrosion, particularly in industrial and environmental settings. Structural aluminum alloys, prominently used in aerospace, automotive, and marine industries, undergo extensive scrutiny due to their susceptibility to atmospheric corrosion. Nonetheless, the absence of suitable electrochemical techniques capable of accommodating droplet volumes underscores the urgent need for advancements in corrosion research. This paper introduces an innovative and efficient multielectrode cell setup aimed at rapid screening of droplet and thin film electrolyte volumes, presenting a new high-throughput screening method. Utilizing AA6014 as a substrate, this paper demonstrates a proof of concept for this methodology. It explores the influence of a crucial parameter, pH, while considering the effects of evaporation and secondary spreading. Various organic corrosion inhibitors, including some well-known inhibitors, were examined to evaluate the impact of chemically related structures on inhibition efficiency. This investigation predominately focuses on comparing and discussing differences and similarities in inhibition performance between bulk and droplet volumes. Ultimately, this comprehensive investigation aims to enhance the understanding and management of corrosion inhibition in droplet and thin film environments.</p>","PeriodicalId":91,"journal":{"name":"Molecular Systems Design & Engineering","volume":" 5","pages":" 518-531"},"PeriodicalIF":3.6,"publicationDate":"2024-02-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139969042","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The feasibilities of the chemical reactions of indoline were analyzed with density functional theory (DFT) simulation. A series of azo disperse dyes using indoline as a coupling component were synthesized, namely D1–D6. The synthesized dyes were investigated by UV-visible, FT-IR, 1H-NMR and MS spectroscopies. DFT simulation was applied to analyze the spectrometric properties of designed dyes. The dyeing of polyethylene terephthalate (PET) and nylon (PA) fabrics were assessed and compared. The synthesized indoline azo disperse dyes exhibited a yellow to red hue on the PET and PA fabrics. Deep shades were achieved with increased dye concentrations for D1 and D2 for the PET and PA fabrics. Excellent rubbing fastness and good sublimation fastness were achieved. Interrelations between dye structures and dyeing performance on the PET and PA fabrics were investigated using DFT calculations.
利用密度泛函理论(DFT)模拟分析了吲哚啉化学反应的可行性。以吲哚啉为偶联组分合成了一系列偶氮分散染料,即 D1-D6。对合成的染料进行了紫外-可见光、傅立叶变换红外光谱、1H-核磁共振和质谱分析。应用 DFT 模拟分析了所设计染料的光谱特性。对聚对苯二甲酸乙二酯(PET)和尼龙(PA)织物的染色进行了评估和比较。合成的吲哚啉偶氮分散染料在 PET 和 PA 织物上呈现出黄色至红色的色调。在 PET 和 PA 织物上,随着染料浓度 D1 和 D2 的增加,可获得深色调。摩擦牢度和升华牢度极佳。利用 DFT 计算研究了染料结构与 PET 和 PA 织物染色性能之间的相互关系。
{"title":"Investigation of novel indoline azo disperse dyes: synthesis, DFT simulation, and dyeing performance on PET and PA fabrics†","authors":"Xiyu Song, Mingda Li, Chuang Dai, Jingyi Li, Yu Wang, Aiqin Hou and Hongfei Qian","doi":"10.1039/D3ME00187C","DOIUrl":"10.1039/D3ME00187C","url":null,"abstract":"<p >The feasibilities of the chemical reactions of indoline were analyzed with density functional theory (DFT) simulation. A series of azo disperse dyes using indoline as a coupling component were synthesized, namely D1–D6. The synthesized dyes were investigated by UV-visible, FT-IR, <small><sup>1</sup></small>H-NMR and MS spectroscopies. DFT simulation was applied to analyze the spectrometric properties of designed dyes. The dyeing of polyethylene terephthalate (PET) and nylon (PA) fabrics were assessed and compared. The synthesized indoline azo disperse dyes exhibited a yellow to red hue on the PET and PA fabrics. Deep shades were achieved with increased dye concentrations for D1 and D2 for the PET and PA fabrics. Excellent rubbing fastness and good sublimation fastness were achieved. Interrelations between dye structures and dyeing performance on the PET and PA fabrics were investigated using DFT calculations.</p>","PeriodicalId":91,"journal":{"name":"Molecular Systems Design & Engineering","volume":" 5","pages":" 500-506"},"PeriodicalIF":3.6,"publicationDate":"2024-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139927479","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The design of reactive biodegradable polymers and materials is an extremely important topic of research. This work presents the synthesis of a highly reactive and degradable poly(aminoamide) containing indole functional group in each repeating unit. The presence of indole functional groups allows for easy post-modification of such poly(aminoamide), enabling the synthesis of a library of functional poly(aminoamide)s via triazolinedione (TAD)–indole click reactions. Furthermore, the use of bifunctional TAD molecules facilitates the crosslinking of such poly(aminoamide), where the degree of crosslinking directly influencing the surface area of the resulting materials. The thermoreversible characteristics of such crosslinked material was also investigated. Additionally, such indole decorated poly(aminoamide) was used as an excellent platform for layer-by-layer coatings and surface functionalization. Degradation studies reveals that both the linear and crosslinked poly(aminoamide)s can be degraded in alkaline solution, where the crosslinked materials degrade faster compared to the linear analogues.
摘要-- 设计活性生物可降解聚合物和材料是极其重要的研究课题。本研究提出了一种高活性、可降解的聚酰胺,其每个重复单元中都含有吲哚官能团。由于吲哚官能团的存在,这种聚(氨基酰胺)可以很容易地进行后修饰,通过三唑二酮(TAD)-吲哚点击反应制备功能性聚(氨基酰胺)库。此外,使用双官能 TAD 分子可使这种聚(氨基酰胺)发生交联,而交联度会影响交联材料的表面积。此外,还研究了这种交联材料的热可逆特性。此外,这种吲哚装饰聚(氨基酰胺)被用作逐层涂层和表面功能化的绝佳平台。降解研究表明,线性和交联聚(氨基酰胺)都能在碱性溶液中降解,其中交联材料比线性类似物降解得更快。
{"title":"Reactive degradable linear poly(aminoamide)s: synthesis, post-polymerization modifications and layer-by-layer coating†","authors":"Sulbha Kumari and Subrata Chattopadhyay","doi":"10.1039/D4ME00003J","DOIUrl":"10.1039/D4ME00003J","url":null,"abstract":"<p >The design of reactive biodegradable polymers and materials is an extremely important topic of research. This work presents the synthesis of a highly reactive and degradable poly(aminoamide) containing indole functional group in each repeating unit. The presence of indole functional groups allows for easy post-modification of such poly(aminoamide), enabling the synthesis of a library of functional poly(aminoamide)s <em>via</em> triazolinedione (TAD)–indole click reactions. Furthermore, the use of bifunctional TAD molecules facilitates the crosslinking of such poly(aminoamide), where the degree of crosslinking directly influencing the surface area of the resulting materials. The thermoreversible characteristics of such crosslinked material was also investigated. Additionally, such indole decorated poly(aminoamide) was used as an excellent platform for layer-by-layer coatings and surface functionalization. Degradation studies reveals that both the linear and crosslinked poly(aminoamide)s can be degraded in alkaline solution, where the crosslinked materials degrade faster compared to the linear analogues.</p>","PeriodicalId":91,"journal":{"name":"Molecular Systems Design & Engineering","volume":" 5","pages":" 490-499"},"PeriodicalIF":3.6,"publicationDate":"2024-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139927490","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Changwei Liu, Congtao Wen, Zekai Zhang, Yuxin Chen, Huachao Yang, Jia-hui Li, Cheng Lian and Honglai Liu
In the catalytic hydrodeoxygenation (HDO) upgrading process of biomass pyrolysis, adsorption behavior plays a crucial role in subsequent reaction processes. A comprehensive understanding of the interfacial behavior is essential for advancing novel biomaterials and commercial bio-oil. We initially establish their precise orientation on the Ni(111) surface and identify the preferential binding site by calculating the binding energy of eight model components (n-butanol, acetic acid, methyl acetate, n-hexanal, toluene, catechol, guaiacol, and 3-methyl-1,2-cyclopentanone). Differences in the electrostatic potential of functional groups and their interactions with the surface lead to surface electrostatic potential distributions, with compounds containing aldehyde functionality demonstrating increased reactivity. To account for competitive adsorption behavior among multiple molecules, ReaxFF-MD simulations were conducted to investigate the adsorption of guaiacol molecules. The inclusion of acetic acid enhances the polarization effect and non-uniformity, indicating competitive adsorption between guaiacol and acetic acid molecules. The chair conformation of acetic acid was demonstrated to be more reasonable from a kinetic perspective, leading to a stronger surface charge induction effect compared to guaiacol. Additionally, this non-uniform distribution is closely correlated with the characteristic bond activations of adsorbed active molecules, serving as a driving force to enhance further hydrogenation and deoxygenation activities of the molecules.
在生物质热解的催化加氢脱氧(HDO)升级过程中,吸附行为在后续反应过程中起着至关重要的作用。全面了解界面行为对于开发新型生物材料和商业生物油至关重要。我们通过计算八种模型成分(正丁醇、乙酸、乙酸甲酯、正己醛、甲苯、邻苯二酚、愈创木酚、3-甲基-1,2-环戊酮)的结合能,初步确定了它们在 Ni (111) 表面的精确取向,并确定了优先结合位点。官能团的静电电位及其与表面的相互作用差异导致了表面静电电位分布,含有醛官能团的化合物显示出更高的反应活性。为了解释多个分子之间的竞争吸附行为,我们进行了 ReaxFF-MD 模拟,以研究愈创木酚分子的吸附情况。醋酸的加入增强了极化效应和不均匀性,表明愈创木酚和醋酸分子之间存在竞争性吸附。从动力学角度看,乙酸的椅子构象更合理,因此与愈创木酚相比,其表面电荷诱导效应更强。此外,这种不均匀分布与吸附的活性分子的键活化特征密切相关,成为进一步提高分子氢化和脱氧活性的驱动力。
{"title":"Adsorption variations on the Ni(111) surface: electron density diversity from oxygen-containing functional groups†","authors":"Changwei Liu, Congtao Wen, Zekai Zhang, Yuxin Chen, Huachao Yang, Jia-hui Li, Cheng Lian and Honglai Liu","doi":"10.1039/D3ME00168G","DOIUrl":"10.1039/D3ME00168G","url":null,"abstract":"<p >In the catalytic hydrodeoxygenation (HDO) upgrading process of biomass pyrolysis, adsorption behavior plays a crucial role in subsequent reaction processes. A comprehensive understanding of the interfacial behavior is essential for advancing novel biomaterials and commercial bio-oil. We initially establish their precise orientation on the Ni(111) surface and identify the preferential binding site by calculating the binding energy of eight model components (<em>n</em>-butanol, acetic acid, methyl acetate, <em>n</em>-hexanal, toluene, catechol, guaiacol, and 3-methyl-1,2-cyclopentanone). Differences in the electrostatic potential of functional groups and their interactions with the surface lead to surface electrostatic potential distributions, with compounds containing aldehyde functionality demonstrating increased reactivity. To account for competitive adsorption behavior among multiple molecules, ReaxFF-MD simulations were conducted to investigate the adsorption of guaiacol molecules. The inclusion of acetic acid enhances the polarization effect and non-uniformity, indicating competitive adsorption between guaiacol and acetic acid molecules. The chair conformation of acetic acid was demonstrated to be more reasonable from a kinetic perspective, leading to a stronger surface charge induction effect compared to guaiacol. Additionally, this non-uniform distribution is closely correlated with the characteristic bond activations of adsorbed active molecules, serving as a driving force to enhance further hydrogenation and deoxygenation activities of the molecules.</p>","PeriodicalId":91,"journal":{"name":"Molecular Systems Design & Engineering","volume":" 5","pages":" 477-489"},"PeriodicalIF":3.6,"publicationDate":"2024-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139927416","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Owing to their excellent fluorescence properties, coumarin derivatives have diverse applications in phototherapy and optoelectronics. Coumarin derivatives with a trifluoromethyl group at the 4-position have been extensively investigated; however, studies on the photophysical properties of fluorescent 3-trifluoromethylated coumarins in solution and in the solid state are rare. Hence, in this study, the photochemical properties of a coumarin derivative incorporating a promising electron-withdrawing fluoroalkyl group at the 3-position in solution and in the crystal form were investigated in detail by absorption and fluorescence spectral measurements, density functional theory and time-dependent density functional theory calculations, and single crystal X-ray structure analysis. The aim was to verify the reasons for its excellent fluorescence emission in solution and in the crystal form. These molecular compounds are expected to have potential applications as coumarin fluorophores in fluorescent emission probes and electronic light-emitting devices.
由于具有出色的荧光特性,香豆素衍生物在光疗和光电子领域有着广泛的应用。在 4 位上带有三氟甲基的香豆素衍生物已被广泛研究;然而,有关 3-三氟甲基化香豆素在溶液和固态中的荧光光物理特性的研究却很少见。因此,在本研究中,通过吸收和荧光光谱测量、密度泛函理论和时变密度泛函理论计算以及单晶 X 射线结构分析,详细研究了一种在 3 位加入了一个有前景的吸电子氟烷基的香豆素衍生物在溶液和晶体中的光化学性质。研究的目的是验证其在溶液和晶体中发出优异荧光的原因。这些分子化合物有望作为香豆素荧光体应用于荧光发射探针和电子发光器件。
{"title":"3-Perfluoroalkylated fluorescent coumarin dyes: rational molecular design and photophysical properties†","authors":"Ayano Ikemura, Yukiko Karuo, Yuki Uehashi, Tomohiro Agou, Masahiro Ebihara, Yasuhiro Kubota, Toshiyasu Inuzuka, Masaaki Omote and Kazumasa Funabiki","doi":"10.1039/D4ME00006D","DOIUrl":"10.1039/D4ME00006D","url":null,"abstract":"<p >Owing to their excellent fluorescence properties, coumarin derivatives have diverse applications in phototherapy and optoelectronics. Coumarin derivatives with a trifluoromethyl group at the 4-position have been extensively investigated; however, studies on the photophysical properties of fluorescent 3-trifluoromethylated coumarins in solution and in the solid state are rare. Hence, in this study, the photochemical properties of a coumarin derivative incorporating a promising electron-withdrawing fluoroalkyl group at the 3-position in solution and in the crystal form were investigated in detail by absorption and fluorescence spectral measurements, density functional theory and time-dependent density functional theory calculations, and single crystal X-ray structure analysis. The aim was to verify the reasons for its excellent fluorescence emission in solution and in the crystal form. These molecular compounds are expected to have potential applications as coumarin fluorophores in fluorescent emission probes and electronic light-emitting devices.</p>","PeriodicalId":91,"journal":{"name":"Molecular Systems Design & Engineering","volume":" 4","pages":" 332-344"},"PeriodicalIF":3.6,"publicationDate":"2024-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139769926","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Recent progress in bone tissue engineering (BTE) has introduced alternative treatments for sizable and non-healing bone defects. Electrical stimulation (ES) has recently been shown to influence bone cells and foster processes such as adhesion, migration, proliferation, and differentiation, which can enhance the bone regeneration process. In this study, we synthesized molybdenum disulfide (MoS2) nanoparticles (NPs) and incorporated them into a polycaprolactone (PCL) polymeric matrix to enhance the electrical conductivity of scaffolds. The PCL/MoS2 nanocomposites were analysed using scanning electron microscopy (SEM), water contact angle measurement, electrical conductivity, and tensile strength assessments. In vitro studies evaluated the adhesion of mesenchymal stem cells (MSCs) and the biocompatibility of the fabricated scaffolds using the MTT assay. Biomineral crystal deposition was determined via in vitro simulated body fluid (SBF) biomineralization, and alizarin red S assays demonstrated enhanced calcium phosphate deposition on the PCL/MoS2 composite scaffold. Additionally, qPCR analysis revealed that exposing MSCs cultured on PCL/MoS2 to ES for two weeks transcriptionally upregulated osteogenic markers (osteocalcin (OC) and alkaline phosphatase (ALP)) in cells. Using either ES or a differentiation medium alone could enhance osteogenesis. However, when both stimuli were applied concurrently, improved levels of osteogenic markers were observed. Our findings suggest that ES plays a significant role in boosting osteogenic differentiation, particularly when combined with MoS2NPs as an osteogenic enhancer. Therefore, PCL/MoS2 nanofibrous scaffolds can be proposed as suitable candidates for BTE, and ES holds great potential as an effective tool along with commonly used biomaterial scaffolds.
骨组织工程(BTE)的最新进展为治疗大面积骨缺损和非愈合性骨缺损提供了替代疗法。最近的研究表明,电刺激(ES)可影响骨细胞并促进骨细胞的粘附、迁移、增殖和分化等过程,从而促进骨再生过程。在这项研究中,我们合成了二硫化钼(MoS2)纳米颗粒(NPs),并将其加入到聚己内酯(PCL)聚合物基质中,以增强支架的导电性。利用扫描电子显微镜(SEM)、水接触角测量、电导率和拉伸强度评估对 PCL/MoS2 纳米复合材料进行了分析。体外研究使用 MTT 试验评估了间充质干细胞(MSCs)的粘附性和所制支架的生物相容性。通过体外模拟体液(SBF)生物矿化测定了生物矿物质晶体沉积,茜素红 S 分析表明 PCL/MoS2 复合支架上的磷酸钙沉积增强。此外,qPCR 分析表明,将 PCL/MoS2 上培养的间充质干细胞暴露于 ES 中两周后,细胞中的成骨标志物(骨钙素(OC)和碱性磷酸酶(ALP))转录上调。单独使用 ES 或分化培养基都能促进成骨。然而,当两种刺激同时使用时,成骨标志物的水平会有所提高。我们的研究结果表明,ES 在促进成骨分化方面起着重要作用,尤其是与作为成骨增强剂的 MoS2NPs 结合使用时。因此,PCL/MoS2 纳米纤维支架可作为 BTE 的合适候选材料,而 ES 作为常用生物材料支架的一种有效工具具有巨大潜力。
{"title":"Enhancing osteogenic differentiation of mesenchymal stem cells seeded on a polycaprolactone/MoS2 nanofibrous scaffold through electrical stimulation","authors":"Elahe Amiri, Mehrdad Khakbiz, Behnaz Bakhshandeh, Nika Ranjbar and Javad Mohammadnejad","doi":"10.1039/D3ME00135K","DOIUrl":"10.1039/D3ME00135K","url":null,"abstract":"<p >Recent progress in bone tissue engineering (BTE) has introduced alternative treatments for sizable and non-healing bone defects. Electrical stimulation (ES) has recently been shown to influence bone cells and foster processes such as adhesion, migration, proliferation, and differentiation, which can enhance the bone regeneration process. In this study, we synthesized molybdenum disulfide (MoS<small><sub>2</sub></small>) nanoparticles (NPs) and incorporated them into a polycaprolactone (PCL) polymeric matrix to enhance the electrical conductivity of scaffolds. The PCL/MoS<small><sub>2</sub></small> nanocomposites were analysed using scanning electron microscopy (SEM), water contact angle measurement, electrical conductivity, and tensile strength assessments. <em>In vitro</em> studies evaluated the adhesion of mesenchymal stem cells (MSCs) and the biocompatibility of the fabricated scaffolds using the MTT assay. Biomineral crystal deposition was determined <em>via in vitro</em> simulated body fluid (SBF) biomineralization, and alizarin red S assays demonstrated enhanced calcium phosphate deposition on the PCL/MoS<small><sub>2</sub></small> composite scaffold. Additionally, qPCR analysis revealed that exposing MSCs cultured on PCL/MoS<small><sub>2</sub></small> to ES for two weeks transcriptionally upregulated osteogenic markers (osteocalcin (OC) and alkaline phosphatase (ALP)) in cells. Using either ES or a differentiation medium alone could enhance osteogenesis. However, when both stimuli were applied concurrently, improved levels of osteogenic markers were observed. Our findings suggest that ES plays a significant role in boosting osteogenic differentiation, particularly when combined with MoS<small><sub>2</sub></small>NPs as an osteogenic enhancer. Therefore, PCL/MoS<small><sub>2</sub></small> nanofibrous scaffolds can be proposed as suitable candidates for BTE, and ES holds great potential as an effective tool along with commonly used biomaterial scaffolds.</p>","PeriodicalId":91,"journal":{"name":"Molecular Systems Design & Engineering","volume":" 6","pages":" 581-596"},"PeriodicalIF":3.6,"publicationDate":"2024-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2024/me/d3me00135k?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139769864","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}