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A vascularized three-dimensional model integrating primary breast tumor cells and microvascular fragments: mimicking the tumor microenvironment involved in chemoresistance. 整合原发乳腺肿瘤细胞和微血管碎片的血管化三维模型:模拟参与化疗耐药的肿瘤微环境。
IF 6 2区 医学 Q1 ONCOLOGY Pub Date : 2026-01-08 DOI: 10.1186/s12935-025-04154-6
Alessandra Lo Cicero, Francesco La Monica, Gabriele Lo Buglio, Simona Campora, Federico Gangemi, Paolo Cinà, Monica Salamone, Margot Lo Pinto, Simone Dario Scilabra, Giulio Ghersi

Background: Tumorigenesis is a complex and dynamic process in which the tumor microenvironment (TME) plays a central role. In solid tumors, the TME contributes to key mechanisms of tumor progression, including metastasis, immune evasion, and resistance to therapies. One major challenge in preclinical cancer research is the development of reliable three-dimensional (3D) in vitro models, which more accurately replicate the in vivo tumor architecture and microenvironmental conditions, such as hypoxia and extracellular matrix (ECM) organization. However, reproducing functional vascular networks and neo-angiogenesis within these models remains a key challenge.

Methods: In this study, an advanced 3D tumor model, referred to as angiotumoroids, was developed by co-culturing primary murine breast tumor cells (PTCs) with species-specific adipose-derived microvascular fragments (MVFs). Angiotumoroids were characterized using scanning electron microscopy and immunostaining, and angiogenesis was evaluated through collagen gel sprouting assays. High-resolution proteomic profiling was conducted, focusing on signatures associated with angiogenesis, extracellular matrix (ECM) composition, and tissue remodeling. Additionally, the response and internalization to anticancer drug treatments were evaluated.

Results: MVFs are successfully integrated in angiotumoroids, resulting in the formation of vasculature-like structures and demonstrating robust structural organization with dynamic modulation of matrix metalloproteinase 9. Formation of neovasculature was visualized through sprouting and branching, driven by both direct PTC-MVF interactions and PTC-conditioned media, highlighting the roles of juxtacrine and paracrine signaling. Proteomic profiling revealed distinct expression patterns associated with angiogenesis, ECM components (including collagen types I and IV), and active ECM remodeling with elevated MMP expression. Additionally, angiotumoroids showed increased expression of ATP-binding cassette (ABC) transporters, particularly ABCB1 (P-glycoprotein), suggesting potential mechanisms of drug efflux. Functionally, angiotumoroids demonstrated reduced sensitivity to doxorubicin compared to PTC spheroids, maintaining structural integrity and higher cell viability post-treatment. Time-course analysis revealed preferential doxorubicin accumulation in MVF-enriched regions, as confirmed by colocalization with CD31, indicating a spatially regulated distribution of the drug mediated by the vascular compartment.

Conclusions: Collectively, these findings establish angiotumoroids as a robust and physiologically relevant in vitro model for studying tumor vascularization, ECM dynamics, and therapeutic response. This platform holds significant promise for predictive cancer research and preclinical drug screening, bridging the gap between traditional in vitro systems and in vivo models.

背景:肿瘤发生是一个复杂的动态过程,其中肿瘤微环境(tumor microenvironment, TME)起着核心作用。在实体肿瘤中,TME参与肿瘤进展的关键机制,包括转移、免疫逃避和对治疗的抵抗。临床前癌症研究的一个主要挑战是开发可靠的三维(3D)体外模型,更准确地复制体内肿瘤结构和微环境条件,如缺氧和细胞外基质(ECM)组织。然而,在这些模型中复制功能血管网络和新血管生成仍然是一个关键的挑战。方法:在本研究中,通过将原代小鼠乳腺肿瘤细胞(ptc)与物种特异性脂肪源性微血管片段(MVFs)共培养,建立了一种先进的三维肿瘤模型,称为类血管肿瘤。通过扫描电镜和免疫染色对类血管瘤进行表征,并通过胶原凝胶发芽试验评估血管新生。进行了高分辨率蛋白质组学分析,重点关注与血管生成,细胞外基质(ECM)组成和组织重塑相关的特征。此外,对抗癌药物治疗的反应和内化进行了评估。结果:MVFs成功整合到类血管肿瘤中,形成血管样结构,并在基质金属蛋白酶9的动态调节下表现出稳健的结构组织。在PTC-MVF直接相互作用和ptc -调节介质的驱动下,通过发芽和分支形成新的脉管系统,突出了近分泌和旁分泌信号的作用。蛋白质组学分析显示不同的表达模式与血管生成、ECM成分(包括I型和IV型胶原)以及MMP表达升高的ECM活性重塑相关。此外,类血管肿瘤显示atp结合盒(ABC)转运蛋白的表达增加,特别是ABCB1 (p -糖蛋白),提示药物外排的潜在机制。功能上,与PTC球体相比,类血管肿瘤对阿霉素的敏感性降低,在处理后保持结构完整性和更高的细胞活力。时间过程分析显示,多柔比星在mvf富集区域优先积累,与CD31共定位证实了这一点,表明药物在血管间室介导的空间调节分布。结论:总的来说,这些发现建立了类血管肿瘤作为研究肿瘤血管化、ECM动力学和治疗反应的一个强大的和生理相关的体外模型。该平台在预测癌症研究和临床前药物筛选方面具有重要前景,弥合了传统体外系统和体内模型之间的差距。
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引用次数: 0
Recent advances in structural and functional diversities of cancer lncRNA-encoded peptides: current opportunities and challenges for enhancing cancer diagnosis and treatment. 肿瘤lncrna编码肽结构与功能多样性研究进展:加强癌症诊断与治疗的机遇与挑战
IF 6 2区 医学 Q1 ONCOLOGY Pub Date : 2026-01-07 DOI: 10.1186/s12935-025-04158-2
Aimin Guo, Shanshan Wang, Linan Huang, Yanping He, Qing Xi, David J Craik, Jun Zhang

Long non-coding RNAs (lncRNAs) are broad-spectrum cellular transcripts that can directly act as RNA regulators and/or partly encode functional peptides (lncRNA-encoded peptides, LRPs) in cancer cells. Recently, cancer LRPs have been found to be involved in cancer cell variability and proliferation, thus gaining widespread attention for their potential in cancer diagnosis, prognosis and therapy. As structures determine functions, the structural diversities of LRPs are the sources of functional variations of LRPs in cancers. Since 6135 cancer LRPs are listed in SPENCER database and 24 SPENCER-unlisted cancer LRPs are reported in several previous studies, this article reviews recent advances of cancer LRPs, analyzes amino acid compositions of them, and undertakes in silico evaluations to assess their structural and functional attributes. These LRPs are dominated by the amino acids Glu, Leu, and Ser and are rarer in the amino acids Cys, His, and Trp, and that many of the LRPs are rich in secondary or tertiary structures. Like mRNA-encoded peptides, these structure-rich cancer LRPs have a wide range of functions, including anti-cancer, cell-penetrating, anti-inflammatory, and antibacterial activities. Relatively, two groups of anticancer values (predicted by AntiCP 2.0 and PreTP-Stack) of these LRPs commonly showed positive and negative correlations with their total charge content and metal-bind aa content, respectively. The increasing amount of data and analysis on cancer LRPs, as reported here, offers opportunities to enhance practical cancer diagnosis and treatment, and to overcome remaining research challenges for cancer LRPs.

长链非编码RNA (Long non-coding RNA, lncRNAs)是一种广谱细胞转录物,可以直接作为RNA调节剂和/或部分编码癌细胞中的功能肽(lncRNA-encoded peptides, LRPs)。近年来,肿瘤lrp被发现参与肿瘤细胞的变异性和增殖,在肿瘤诊断、预后和治疗方面的潜力受到广泛关注。由于结构决定功能,lrp的结构多样性是癌症中lrp功能变化的来源。由于SPENCER数据库中已收录了6135种癌症lrp,且已有研究报道了24种未被SPENCER收录的癌症lrp,本文综述了癌症lrp的最新进展,分析了它们的氨基酸组成,并对其结构和功能属性进行了计算机评价。这些lrp以氨基酸Glu、Leu和Ser为主,而在氨基酸Cys、His和Trp中较少,并且许多lrp具有丰富的二级或三级结构。与mrna编码的肽一样,这些富含结构的肿瘤lrp具有广泛的功能,包括抗癌、细胞穿透、抗炎和抗菌活性。相对而言,这两组lrp的抗癌值(通过AntiCP 2.0和prep - stack预测)通常分别与它们的总电荷含量和金属结合aa含量呈正相关和负相关。正如本文所报道的,关于癌症lrp的数据和分析数量的增加,为加强实际的癌症诊断和治疗,以及克服癌症lrp的剩余研究挑战提供了机会。
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引用次数: 0
Rho-related GTP-binding protein RhoE (RND3) regulates multiple myeloma bone disease. rho相关gtp结合蛋白RhoE (RND3)调控多发性骨髓瘤骨病。
IF 6 2区 医学 Q1 ONCOLOGY Pub Date : 2026-01-07 DOI: 10.1186/s12935-025-04166-2
Qianwen Gao, Wenjiao Tang, Ziyue Mi, Siyao He, Haonan Yang, Fangfang Wang, Jingcao Huang, Yue Zhang, Jingjing Wen, Linfeng Li, Hongmei Luo, Xiang Liu, Xinyu Zhai, Xiaohui Zhao, Li Zhang, Ting Niu, Yuhuan Zheng
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引用次数: 0
Leveraging the germ layer development patterns to predict prognosis and identify MEST as a novel therapeutic target in glioma. 利用胚层发育模式预测预后并确定MEST作为胶质瘤的新治疗靶点。
IF 6 2区 医学 Q1 ONCOLOGY Pub Date : 2026-01-07 DOI: 10.1186/s12935-025-04163-5
Wei Zhang, Shunjin Xia, Yanming Xiao, Hongwei Liu, Chaoqian Wang, Luohuan Dai, Yinhua Chen, Xuelei Lin, Hongyi Liu, Nian Jiang

Gliomas represent one of the most common types of primary brain tumor. Due to their poor prognosis and propensity for recurrence, new therapeutic targets are urgently required. A consensus is emerging that there is a significant relationship between tumor formation and embryonic development. However, the precise mechanisms and regulatory targets remain unclear. A variety of bioinformatics techniques, including GSVA, differential expression analysis, machine learning algorithms and others, were employed to elucidate the significance of germ layer development (GLD) in glioma and identify MEST as the key gene. To validate the results, in vivo and in vitro experiments were conducted, including tumor xenografts, RT-qPCR, immunocytofluorescence, transwell assays and others, which confirmed the central role of the selected oncogenic gene. Here, we performed a comprehensive bioinformatics analysis of GLD genes, providing a novel insight into the landscape of the GLD in gliomas, and confirmed the GLD-related gene MEST as a key oncogenic therapeutic target via machine learning feature selection framework. Furthermore, we have identified the core gene MEST and have conducted extensive research to elucidate its pivotal role in glioma progression through in vivo and in vitro experiments. We leveraged the GLD patterns in glioma and found that the MEST might promote the glioma development through activating RAS signaling and Wnt signaling.

胶质瘤是最常见的原发性脑肿瘤之一。由于其预后差,易复发,迫切需要新的治疗靶点。肿瘤的形成与胚胎发育之间存在着重要的关系,这一共识正在形成。然而,确切的机制和监管目标仍不清楚。利用多种生物信息学技术,包括GSVA、差异表达分析、机器学习算法等,阐明了胚层发育(GLD)在胶质瘤中的意义,并确定了MEST是关键基因。为了验证结果,我们进行了体内和体外实验,包括肿瘤异种移植、RT-qPCR、免疫细胞荧光、transwell实验等,证实了所选择的致癌基因的核心作用。在这里,我们对GLD基因进行了全面的生物信息学分析,为胶质瘤中GLD的景观提供了新的见解,并通过机器学习特征选择框架证实了GLD相关基因MEST是一个关键的致癌治疗靶点。此外,我们已经确定了核心基因MEST,并通过体内和体外实验进行了广泛的研究,以阐明其在胶质瘤进展中的关键作用。我们利用胶质瘤中的GLD模式,发现MEST可能通过激活RAS信号和Wnt信号来促进胶质瘤的发展。
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引用次数: 0
Methotrexate-triggered ferroptosis suppresses oral cancer progression by phosphorylated KEAP1-mediated NRF2 degradation to inhibit SLC7A11/GPX4 signaling pathway. 甲氨蝶呤触发的铁上沉症通过磷酸化keap1介导的NRF2降解抑制SLC7A11/GPX4信号通路抑制口腔癌进展。
IF 6 2区 医学 Q1 ONCOLOGY Pub Date : 2026-01-06 DOI: 10.1186/s12935-025-04019-y
Chenchen Yu, Tingting Zhang, Jialu Yuan, Yijing Su, Hongli Zhang, Liqin Xu, Xiaomin Li, Jianan Cui, Rui Xu, Yan Zhou, Hongming Huang, Xiaorong Zhou, Yongqiang Zhou, Erhao Zhang

Background: Oral cancer (OC) is the most common type of head and neck cancer, with a high mortality rate, and is a leading cause of cancer-related deaths worldwide. Drug-induced ferroptosis is a novel form of non-apoptotic cell death that offers a promising strategy for cancer therapy. Accumulating evidence has emphasized the significant role of methotrexate (MTX) in the treatment of many malignancies; however, its role in the ferroptosis pathway in OCs and its underlying mechanisms remain poorly understood.

Methods: After treating the OC cells with MTX, several cellular function assays were performed, including cell proliferation, apoptosis, colony formation, and wound healing assays. Distinctive features of ferroptosis were detected, and qPCR and western blot (WB) assays were performed to validate the expression of genes and proteins related to ferroptosis pathways in MTX-treated cells. In vitro experiments were conducted to further explore the mechanisms by which MTX regulates the stability of nuclear factor erythroid 2-related factor 2 (NRF2) in OC cells. Finally, in a mouse model using MOC1 cells, some experiments were performed to demonstrate MTX-induced ferroptosis and tumor suppression.

Results: In this study, based on in vitro and in vivo experiments, we found that MTX significantly reduced OC cell viability by inducing ferroptosis. Mechanistically, MTX administration increased the phosphorylation of Kelch-like ECH-associated protein 1 (KEAP1) at threonine 43 via activation of the ERK/MAPK signaling pathway, thereby maintaining the protein complex formed by KEAP1 and NRF2. As result of the decreased NRF2 expression, the levels of SLC7A11 and GPX4 proteins were markedly suppressed in MTX-treated OC cells, ultimately leading to the induction of ferroptosis in OC.

Conclusions: Our data demonstrated that MTX-mediated activation of the ERK/KEAP1 signaling pathway significantly induced ferroptosis by inhibiting the NRF2/HO-1/SLC7A11/GPX4 axis, thereby suppressing OC progression. These findings suggest that MTX is a promising candidate for OC treatment, offering a meaningful and effective therapeutic-strategy.

背景:口腔癌(OC)是头颈部最常见的癌症类型,死亡率高,是全球癌症相关死亡的主要原因。药物诱导的铁下垂是一种新的非凋亡细胞死亡形式,为癌症治疗提供了一种有前途的策略。越来越多的证据强调了甲氨蝶呤(MTX)在治疗许多恶性肿瘤中的重要作用;然而,其在OCs中铁下垂途径中的作用及其潜在机制仍然知之甚少。方法:用MTX处理OC细胞后,进行细胞功能测定,包括细胞增殖、凋亡、菌落形成和伤口愈合测定。检测到铁下垂的独特特征,并采用qPCR和western blot (WB)方法验证mtx处理细胞中铁下垂通路相关基因和蛋白的表达。体外实验进一步探讨MTX调控OC细胞核因子红细胞2相关因子2 (NRF2)稳定性的机制。最后,在使用MOC1细胞的小鼠模型中,进行了一些实验来证明mtx诱导的铁下垂和肿瘤抑制。结果:本研究通过体外和体内实验,我们发现MTX通过诱导铁下垂显著降低OC细胞活力。机制上,MTX通过激活ERK/MAPK信号通路,增加kelch样ECH-associated protein 1 (KEAP1)苏氨酸43位点的磷酸化,从而维持KEAP1和NRF2形成的蛋白复合物。由于NRF2表达降低,mtx处理的OC细胞中SLC7A11和GPX4蛋白水平被显著抑制,最终导致OC中铁下垂。结论:我们的数据表明,mtx介导的ERK/KEAP1信号通路的激活通过抑制NRF2/HO-1/SLC7A11/GPX4轴显著诱导铁凋亡,从而抑制OC的进展。这些发现表明甲氨蝶呤是一种有希望的卵巢癌治疗候选药物,提供了一种有意义和有效的治疗策略。
{"title":"Methotrexate-triggered ferroptosis suppresses oral cancer progression by phosphorylated KEAP1-mediated NRF2 degradation to inhibit SLC7A11/GPX4 signaling pathway.","authors":"Chenchen Yu, Tingting Zhang, Jialu Yuan, Yijing Su, Hongli Zhang, Liqin Xu, Xiaomin Li, Jianan Cui, Rui Xu, Yan Zhou, Hongming Huang, Xiaorong Zhou, Yongqiang Zhou, Erhao Zhang","doi":"10.1186/s12935-025-04019-y","DOIUrl":"10.1186/s12935-025-04019-y","url":null,"abstract":"<p><strong>Background: </strong>Oral cancer (OC) is the most common type of head and neck cancer, with a high mortality rate, and is a leading cause of cancer-related deaths worldwide. Drug-induced ferroptosis is a novel form of non-apoptotic cell death that offers a promising strategy for cancer therapy. Accumulating evidence has emphasized the significant role of methotrexate (MTX) in the treatment of many malignancies; however, its role in the ferroptosis pathway in OCs and its underlying mechanisms remain poorly understood.</p><p><strong>Methods: </strong>After treating the OC cells with MTX, several cellular function assays were performed, including cell proliferation, apoptosis, colony formation, and wound healing assays. Distinctive features of ferroptosis were detected, and qPCR and western blot (WB) assays were performed to validate the expression of genes and proteins related to ferroptosis pathways in MTX-treated cells. In vitro experiments were conducted to further explore the mechanisms by which MTX regulates the stability of nuclear factor erythroid 2-related factor 2 (NRF2) in OC cells. Finally, in a mouse model using MOC1 cells, some experiments were performed to demonstrate MTX-induced ferroptosis and tumor suppression.</p><p><strong>Results: </strong>In this study, based on in vitro and in vivo experiments, we found that MTX significantly reduced OC cell viability by inducing ferroptosis. Mechanistically, MTX administration increased the phosphorylation of Kelch-like ECH-associated protein 1 (KEAP1) at threonine 43 via activation of the ERK/MAPK signaling pathway, thereby maintaining the protein complex formed by KEAP1 and NRF2. As result of the decreased NRF2 expression, the levels of SLC7A11 and GPX4 proteins were markedly suppressed in MTX-treated OC cells, ultimately leading to the induction of ferroptosis in OC.</p><p><strong>Conclusions: </strong>Our data demonstrated that MTX-mediated activation of the ERK/KEAP1 signaling pathway significantly induced ferroptosis by inhibiting the NRF2/HO-1/SLC7A11/GPX4 axis, thereby suppressing OC progression. These findings suggest that MTX is a promising candidate for OC treatment, offering a meaningful and effective therapeutic-strategy.</p>","PeriodicalId":9385,"journal":{"name":"Cancer Cell International","volume":" ","pages":"64"},"PeriodicalIF":6.0,"publicationDate":"2026-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12870982/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145910579","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Single-cell spatial analysis identifies ID1-high endothelial cells in tertiary lymphoid structures as predictors of durable response to immunotherapy in non-small cell lung cancer. 单细胞空间分析发现,三级淋巴样结构中id1高内皮细胞可作为非小细胞肺癌免疫治疗持久反应的预测因子。
IF 6 2区 医学 Q1 ONCOLOGY Pub Date : 2026-01-06 DOI: 10.1186/s12935-025-04161-7
Kinnosuke Matsumoto, Yoshimi Noda, Kensuke Hachiya, Fumitaka Muramatsu, Naoki Okamoto, Weizhen Jia, Takayuki Shiroyama, Masahide Mori, Motohiro Tamiya, Yuhei Kinehara, Akihiro Tamiya, Shigeki Shimizu, Hidekazu Suzuki, Kiyonobu Ueno, Toshie Niki, Satoshi Tetsumoto, Osamu Morimura, Akio Osa, Toshiyuki Minami, Satoshi Nojima, Yoshito Takeda, Yasushi Shintani, Atsushi Kumanogoh, Nobuyuki Takakura
{"title":"Single-cell spatial analysis identifies ID1-high endothelial cells in tertiary lymphoid structures as predictors of durable response to immunotherapy in non-small cell lung cancer.","authors":"Kinnosuke Matsumoto, Yoshimi Noda, Kensuke Hachiya, Fumitaka Muramatsu, Naoki Okamoto, Weizhen Jia, Takayuki Shiroyama, Masahide Mori, Motohiro Tamiya, Yuhei Kinehara, Akihiro Tamiya, Shigeki Shimizu, Hidekazu Suzuki, Kiyonobu Ueno, Toshie Niki, Satoshi Tetsumoto, Osamu Morimura, Akio Osa, Toshiyuki Minami, Satoshi Nojima, Yoshito Takeda, Yasushi Shintani, Atsushi Kumanogoh, Nobuyuki Takakura","doi":"10.1186/s12935-025-04161-7","DOIUrl":"10.1186/s12935-025-04161-7","url":null,"abstract":"","PeriodicalId":9385,"journal":{"name":"Cancer Cell International","volume":" ","pages":"65"},"PeriodicalIF":6.0,"publicationDate":"2026-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12870244/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145910567","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SLC25A39 facilitates Sorafenib resistance in hepatocellular carcinoma by inhibiting mitochondrial oxidative stress-induced ferroptosis. SLC25A39通过抑制线粒体氧化应激诱导的铁下垂促进肝癌索拉非尼耐药。
IF 6 2区 医学 Q1 ONCOLOGY Pub Date : 2026-01-06 DOI: 10.1186/s12935-025-04151-9
Xilin Geng, Jibin Li, Bing Wu, Weifang Wang, Zeyu Li, Sinan Liu, Hui Li, Hulin Chang
{"title":"SLC25A39 facilitates Sorafenib resistance in hepatocellular carcinoma by inhibiting mitochondrial oxidative stress-induced ferroptosis.","authors":"Xilin Geng, Jibin Li, Bing Wu, Weifang Wang, Zeyu Li, Sinan Liu, Hui Li, Hulin Chang","doi":"10.1186/s12935-025-04151-9","DOIUrl":"10.1186/s12935-025-04151-9","url":null,"abstract":"","PeriodicalId":9385,"journal":{"name":"Cancer Cell International","volume":" ","pages":"63"},"PeriodicalIF":6.0,"publicationDate":"2026-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12870238/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145910530","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction: An integrative analysis of transcriptome, methylome and single-cell RNA sequencing data identifies UBE2H as a marker of oxaliplatin resistance in colorectal cancer. 更正:一项转录组、甲基组和单细胞RNA测序数据的综合分析确定UBE2H是结直肠癌患者奥沙利铂耐药的标志物。
IF 6 2区 医学 Q1 ONCOLOGY Pub Date : 2026-01-05 DOI: 10.1186/s12935-025-04098-x
Jinman Fang, Qizhi Zhu, Bo Hong, Xueling Li, Hongzhi Wang
{"title":"Correction: An integrative analysis of transcriptome, methylome and single-cell RNA sequencing data identifies UBE2H as a marker of oxaliplatin resistance in colorectal cancer.","authors":"Jinman Fang, Qizhi Zhu, Bo Hong, Xueling Li, Hongzhi Wang","doi":"10.1186/s12935-025-04098-x","DOIUrl":"10.1186/s12935-025-04098-x","url":null,"abstract":"","PeriodicalId":9385,"journal":{"name":"Cancer Cell International","volume":"26 1","pages":"1"},"PeriodicalIF":6.0,"publicationDate":"2026-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12766932/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145905679","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Circulating extracellular vesicle PTPRO methylation: an exploratory biomarker for minimally invasive diagnosis of early-stage lung adenocarcinoma. 循环细胞外囊泡PTPRO甲基化:早期肺腺癌微创诊断的探索性生物标志物。
IF 6 2区 医学 Q1 ONCOLOGY Pub Date : 2026-01-05 DOI: 10.1186/s12935-025-04127-9
Hongmei Dong, Shuanglong Chen, Weiheng Cui, Pingshan Yang, Fan Liu, Songwang Cai, Hongzheng Ren, Shuyao Zhang, Shegan Gao, Hao Zhang

Protein tyrosine phosphatase receptor-type O (PTPRO), a member of the PTP family, has garnered attention for its diagnostic and prognostic potential through the methylation of circulating tumor DNA (ctDNA). However, the utility of ctDNA has shown limited sensitivity and specificity, particularly in early-stage lung adenocarcinoma (LUAD). Given the enhanced stability of tumor-derived DNA in small extracellular vesicles (sEVs) from cancer cells, this research investigates the feasibility of using PTPRO methylation in saliva-derived sEVs as a non-invasive and easily accessible biomarker for the early detection of LUAD. To explore the relationship between PTPRO methylation and prognosis in early-stage LUAD, we conducted Kaplan-Meier survival analyses and assessed the methylation status of the PTPRO promoter using methylation-specific PCR (MSP) and q-MSP. Saliva samples were collected from 60 early-stage LUAD patients, 30 pneumonia patients, and 21 healthy controls, with isolation and characterization of salivary sEVs through transmission electron microscopy (TEM), nanoparticle tracking analysis (NTA), and immunoblotting. Kaplan-Meier analysis revealed hypermethylation of PTPRO was linked to poorer overall survival in early-stage LUAD patients. PTPRO methylation was detected in salivary sEVs of 73.3% of early-stage LUAD patients, compared to only 35% in plasma sEVs. Receiver operating characteristic (ROC) analysis confirmed that PTPRO methylation in salivary sEVs effectively distinguished early-stage LUAD patients from both pneumonia patients and healthy individuals. This suggests that PTPRO hypermethylation is associated with adverse prognosis in early-stage LUAD. The detection of PTPRO methylation in salivary sEVs demonstrates high sensitivity and specificity, indicating its potential as an epigenetic biomarker for the non-invasive diagnosis of early-stage LUAD.

蛋白酪氨酸磷酸酶受体O型(PTPRO)是PTP家族的一员,因其通过循环肿瘤DNA (ctDNA)甲基化的诊断和预后潜力而受到关注。然而,ctDNA的应用显示出有限的敏感性和特异性,特别是在早期肺腺癌(LUAD)中。鉴于癌细胞的小细胞外囊泡(sev)中肿瘤来源的DNA的稳定性增强,本研究探讨了将唾液来源的sev中的PTPRO甲基化作为LUAD早期检测的非侵入性和易于获取的生物标志物的可行性。为了探讨早期LUAD患者PTPRO甲基化与预后的关系,我们进行了Kaplan-Meier生存分析,并使用甲基化特异性PCR (methylation-specific PCR, MSP)和q-MSP评估了PTPRO启动子的甲基化状态。收集60例早期LUAD患者、30例肺炎患者和21例健康对照者的唾液样本,通过透射电子显微镜(TEM)、纳米颗粒跟踪分析(NTA)和免疫印迹法分离和表征唾液sev。Kaplan-Meier分析显示,PTPRO的高甲基化与早期LUAD患者较差的总生存率有关。73.3%的早期LUAD患者在唾液sev中检测到PTPRO甲基化,而在血浆sev中仅检测到35%。受试者工作特征(ROC)分析证实,唾液sev中的PTPRO甲基化可以有效区分早期LUAD患者与肺炎患者和健康个体。这表明PTPRO高甲基化与早期LUAD的不良预后有关。唾液sev中PTPRO甲基化的检测具有较高的敏感性和特异性,表明其有潜力作为早期LUAD非侵入性诊断的表观遗传生物标志物。
{"title":"Circulating extracellular vesicle PTPRO methylation: an exploratory biomarker for minimally invasive diagnosis of early-stage lung adenocarcinoma.","authors":"Hongmei Dong, Shuanglong Chen, Weiheng Cui, Pingshan Yang, Fan Liu, Songwang Cai, Hongzheng Ren, Shuyao Zhang, Shegan Gao, Hao Zhang","doi":"10.1186/s12935-025-04127-9","DOIUrl":"10.1186/s12935-025-04127-9","url":null,"abstract":"<p><p>Protein tyrosine phosphatase receptor-type O (PTPRO), a member of the PTP family, has garnered attention for its diagnostic and prognostic potential through the methylation of circulating tumor DNA (ctDNA). However, the utility of ctDNA has shown limited sensitivity and specificity, particularly in early-stage lung adenocarcinoma (LUAD). Given the enhanced stability of tumor-derived DNA in small extracellular vesicles (sEVs) from cancer cells, this research investigates the feasibility of using PTPRO methylation in saliva-derived sEVs as a non-invasive and easily accessible biomarker for the early detection of LUAD. To explore the relationship between PTPRO methylation and prognosis in early-stage LUAD, we conducted Kaplan-Meier survival analyses and assessed the methylation status of the PTPRO promoter using methylation-specific PCR (MSP) and q-MSP. Saliva samples were collected from 60 early-stage LUAD patients, 30 pneumonia patients, and 21 healthy controls, with isolation and characterization of salivary sEVs through transmission electron microscopy (TEM), nanoparticle tracking analysis (NTA), and immunoblotting. Kaplan-Meier analysis revealed hypermethylation of PTPRO was linked to poorer overall survival in early-stage LUAD patients. PTPRO methylation was detected in salivary sEVs of 73.3% of early-stage LUAD patients, compared to only 35% in plasma sEVs. Receiver operating characteristic (ROC) analysis confirmed that PTPRO methylation in salivary sEVs effectively distinguished early-stage LUAD patients from both pneumonia patients and healthy individuals. This suggests that PTPRO hypermethylation is associated with adverse prognosis in early-stage LUAD. The detection of PTPRO methylation in salivary sEVs demonstrates high sensitivity and specificity, indicating its potential as an epigenetic biomarker for the non-invasive diagnosis of early-stage LUAD.</p>","PeriodicalId":9385,"journal":{"name":"Cancer Cell International","volume":" ","pages":"62"},"PeriodicalIF":6.0,"publicationDate":"2026-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12870393/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145905610","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The prognostic predictive SER model for NK/T-cell lymphoma in the era of modern immunotherapy. 现代免疫治疗时代NK/ t细胞淋巴瘤SER预后预测模型
IF 6 2区 医学 Q1 ONCOLOGY Pub Date : 2026-01-04 DOI: 10.1186/s12935-025-04108-y
Runkun Han, Denghan Zhang, Shenrui Bai, Yifei Ma, Bushu Xu, Hao Chen, Ao Zhang
<p><strong>Background: </strong>As immune checkpoint inhibitors (ICI)-based combination therapies are increasingly explored for treating NK/T-cell lymphoma (NKTCL), there is a critical clinical need to identify patients who will benefit from ICI without relying on costly genomic testing.</p><p><strong>Methods: </strong>A machine learning model was developed using routine blood tests and clinical characteristics from 364 ICI-treated NKTCL patients. The case records of 1259 NKTCL patients discharged from Sun Yat-Sen University Cancer Center, Guangzhou, between January 2018 and December 2023 were retrospectively analyzed. After screening, 364 ICI-treated patients were included in the study. These patients were randomly assigned to training (n = 254) and validation (n = 110) cohorts in a 2:1 ratio. Lasso regression and five machine learning algorithms, including random forest (RF), were applied for feature selection and clinical benefit prediction. The RF model demonstrated optimal predictive performance using five key features. To predict overall survival, we combined the RF model with two critical clinical factors-Ann Arbor stage and Eastern Cooperative Oncology Group (ECOG) performance status-to develop the stage-ECOG-RF (SER) model. This model generates a risk score to quantify the probability of poor survival following ICI treatment. In total, the SER model including seven features is significantly associated with clinical outcomes and long-term survival.</p><p><strong>Results: </strong>Five feature variables-lymphocyte count, platelet count, bone marrow involvement, cholesterol (CHO), and EBV-DNA copy number-were selected from 23 laboratory tests and clinical characteristics with complete data (0% missing rate). In the training cohort, the RF algorithm showed an area under the receiver operating characteristic curve (AUC) of 0.878, outperforming extreme gradient boosting (XGBoost), support vector machine (SVM), decision trees (DT), logistic regression and SVM algorithms. The RF model demonstrated sensitivity of 83.3% and specificity of 78.9%. In the validation cohort, the AUC of the RF model was 0.752, with sensitivity of 68.8% and specificity of 69.1%. The SER model, which integrates the RF model with Ann Arbor stage and ECOG, attained time-dependent area under the receiver operating characteristic curve (AUC(t)) values of 0.736 and 0.650 for predicting 3- and 5-year overall survival. This surpasses the prognostic index of natural killer lymphoma (PINK-E) and the net reclassification index (NRI) models, which showed AUC(t) values of 0.722 and 0.532, and 0.707 and 0.541 at 3 and 5 years, respectively.</p><p><strong>Conclusions: </strong>Based on routine blood tests and clinical data, the SER model for ICI therapy of NKTCL-optimized with the RF algorithm and incorporating Ann Arbor stage and ECOG-demonstrates superior predictive performance compared to PINK-E and NRI. It provides a valuable reference for early prediction of ICI therapy failure a
背景:随着基于免疫检查点抑制剂(ICI)的联合疗法越来越多地用于治疗NK/ t细胞淋巴瘤(NKTCL),临床迫切需要在不依赖昂贵的基因组检测的情况下确定将从ICI中受益的患者。方法:利用364例ci治疗的NKTCL患者的血常规检查和临床特征建立机器学习模型。回顾性分析2018年1月至2023年12月广州中山大学肿瘤中心1259例NKTCL患者的病例记录。筛选后,364例ci治疗患者纳入研究。这些患者按2:1的比例随机分配到训练组(n = 254)和验证组(n = 110)。应用Lasso回归和随机森林(RF)等5种机器学习算法进行特征选择和临床获益预测。RF模型使用五个关键特征展示了最佳的预测性能。为了预测总生存期,我们将RF模型与两个关键临床因素- ann Arbor分期和Eastern Cooperative Oncology Group (ECOG)的表现状态相结合,建立了分期-ECOG-RF (SER)模型。该模型产生一个风险评分来量化ICI治疗后生存不良的概率。总的来说,包括7个特征的SER模型与临床结果和长期生存显著相关。结果:从23项实验室检查和临床特征中筛选出5个特征变量:淋巴细胞计数、血小板计数、骨髓受累、胆固醇(CHO)和EBV-DNA拷贝数,数据完整(缺失率0%)。在训练队列中,RF算法的接收者工作特征曲线下面积(AUC)为0.878,优于极端梯度增强(XGBoost)、支持向量机(SVM)、决策树(DT)、逻辑回归和支持向量机(SVM)算法。RF模型的敏感性为83.3%,特异性为78.9%。在验证队列中,RF模型的AUC为0.752,灵敏度为68.8%,特异性为69.1%。SER模型将RF模型与Ann Arbor分期和ECOG相结合,在预测3年和5年总生存时,受试者工作特征曲线下的时间依赖面积(AUC(t))分别为0.736和0.650。这超过了自然杀伤性淋巴瘤的预后指数(PINK-E)和净重分类指数(NRI)模型,后者在3年和5年的AUC(t)分别为0.722和0.532,0.707和0.541。结论:基于血常规检查和临床资料,采用RF算法优化并纳入Ann Arbor分期和ecog的nktcl ICI治疗SER模型的预测性能优于PINK-E和NRI。为ICI治疗失败的早期预测及远期生存提供了有价值的参考。
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Cancer Cell International
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