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KOLF2.1J iPSCs carry CNVs associated with neurodevelopmental disorders. KOLF2.1J iPSCs携带与神经发育障碍有关的CNV。
Pub Date : 2024-03-07 DOI: 10.1016/j.stem.2024.02.007
Carolina Gracia-Diaz, Jonathan E Perdomo, Munir E Khan, Thomas Roule, Brianna L Disanza, Gregory G Cajka, Sunyimeng Lei, Alyssa L Gagne, Jean Ann Maguire, Ophir Shalem, Elizabeth J Bhoj, Rebecca C Ahrens-Nicklas, Deborah L French, Ethan M Goldberg, Kai Wang, Joseph T Glessner, Naiara Akizu
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引用次数: 0
Canonical Wnt signaling directs the generation of functional human PSC-derived atrioventricular canal cardiomyocytes in bioprinted cardiac tissues. 典型 Wnt 信号指导在生物打印心脏组织中生成功能性人类 PSC 衍生房室管心肌细胞。
Pub Date : 2024-03-07 Epub Date: 2024-02-15 DOI: 10.1016/j.stem.2024.01.008
Chenxi Ye, Chuanlai Yang, Heqiang Zhang, Rui Gao, Yingnan Liao, Yali Zhang, Lingjun Jie, Yanhui Zhang, Tong Cheng, Yan Wang, Jie Ren

The creation of a functional 3D bioprinted human heart remains challenging, largely due to the lack of some crucial cardiac cell types, including the atrioventricular canal (AVC) cardiomyocytes, which are essential to slow down the electrical impulse between the atrium and ventricle. By utilizing single-cell RNA sequencing analysis and a 3D bioprinting technology, we discover that stage-specific activation of canonical Wnt signaling creates functional AVC cardiomyocytes derived from human pluripotent stem cells. These cardiomyocytes display morphological characteristics and express molecular markers of AVC cardiomyocytes, including transcription factors TBX2 and MSX2. When bioprinted in prefabricated cardiac tissues, these cardiomyocytes successfully delay the electrical impulse, demonstrating their capability of functioning as the AVC cardiomyocytes in vitro. Thus, these findings not only identify canonical Wnt signaling as a key regulator of the AVC cardiomyocyte differentiation in vitro, but, more importantly, provide a critical cellular source for the biofabrication of a functional human heart.

创建功能性三维生物打印人类心脏仍然具有挑战性,这主要是由于缺乏一些关键的心脏细胞类型,包括房室管(AVC)心肌细胞,而这些细胞对减慢心房和心室之间的电脉冲至关重要。通过利用单细胞RNA测序分析和三维生物打印技术,我们发现,在特定阶段激活典型Wnt信号,可从人类多能干细胞中生成功能性AVC心肌细胞。这些心肌细胞显示出AVC心肌细胞的形态特征并表达其分子标记,包括转录因子TBX2和MSX2。在预制心脏组织中进行生物打印时,这些心肌细胞成功延迟了电脉冲,证明它们有能力在体外发挥AVC心肌细胞的功能。因此,这些发现不仅确定了典型 Wnt 信号是体外 AVC 心肌细胞分化的关键调控因子,更重要的是,它们为功能性人类心脏的生物制造提供了关键的细胞来源。
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引用次数: 0
A time- and single-cell-resolved model of murine bone marrow hematopoiesis. 小鼠骨髓造血的时间和单细胞分辨模型
Pub Date : 2024-02-01 Epub Date: 2024-01-05 DOI: 10.1016/j.stem.2023.12.001
Iwo Kucinski, Joana Campos, Melania Barile, Francesco Severi, Natacha Bohin, Pedro N Moreira, Lewis Allen, Hannah Lawson, Myriam L R Haltalli, Sarah J Kinston, Dónal O'Carroll, Kamil R Kranc, Berthold Göttgens

The paradigmatic hematopoietic tree model is increasingly recognized to be limited, as it is based on heterogeneous populations largely defined by non-homeostatic assays testing cell fate potentials. Here, we combine persistent labeling with time-series single-cell RNA sequencing to build a real-time, quantitative model of in vivo tissue dynamics for murine bone marrow hematopoiesis. We couple cascading single-cell expression patterns with dynamic changes in differentiation and growth speeds. The resulting explicit linkage between molecular states and cellular behavior reveals widely varying self-renewal and differentiation properties across distinct lineages. Transplanted stem cells show strong acceleration of differentiation at specific stages of erythroid and neutrophil production, illustrating how the model can quantify the impact of perturbations. Our reconstruction of dynamic behavior from snapshot measurements is akin to how a kinetoscope allows sequential images to merge into a movie. We posit that this approach is generally applicable to understanding tissue-scale dynamics at high resolution.

人们越来越认识到,典型的造血树模型是有局限性的,因为它是建立在异质群体的基础上的,而异质群体主要是由测试细胞命运潜能的非同源试验确定的。在这里,我们将持续标记与时间序列单细胞 RNA 测序相结合,为小鼠骨髓造血建立了一个实时、定量的体内组织动态模型。我们将级联单细胞表达模式与分化和生长速度的动态变化结合起来。由此产生的分子状态与细胞行为之间的明确联系,揭示了不同品系之间千差万别的自我更新和分化特性。移植干细胞在红细胞和中性粒细胞生成的特定阶段显示出强烈的分化加速,说明了该模型如何量化扰动的影响。我们从快照测量中重建动态行为的方法,类似于动态显微镜如何将连续图像合并成一部电影。我们认为这种方法普遍适用于以高分辨率理解组织尺度的动态变化。
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引用次数: 0
Hallmarks of stemness in mammalian tissues. 哺乳动物组织干性的特征
Pub Date : 2024-01-04 DOI: 10.1016/j.stem.2023.12.006
Joep Beumer, Hans Clevers

All adult tissues experience wear and tear. Most tissues can compensate for cell loss through the activity of resident stem cells. Although the cellular maintenance strategies vary greatly between different adult (read: postnatal) tissues, the function of stem cells is best defined by their capacity to replace lost tissue through division. We discuss a set of six complementary hallmarks that are key enabling features of this basic function. These include longevity and self-renewal, multipotency, transplantability, plasticity, dependence on niche signals, and maintenance of genome integrity. We discuss these hallmarks in the context of some of the best-understood adult stem cell niches.

所有成人组织都会经历磨损。大多数组织可以通过常驻干细胞的活动来补偿细胞损失。虽然不同成人(解读:出生后)组织的细胞维持策略大相径庭,但干细胞的功能最好地定义为其通过分裂来替代流失组织的能力。我们讨论了这一基本功能的六大互补特征。这些特征包括长寿和自我更新、多能性、可移植性、可塑性、对生态位信号的依赖性以及保持基因组完整性。我们将结合一些最易理解的成体干细胞龛位来讨论这些特征。
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引用次数: 0
The KRAS tour: Studying metabolic reprogramming in isogenic pancreatic cancer organoids. KRAS 之旅:研究异源胰腺癌器官组织中的代谢重编程。
Pub Date : 2024-01-04 DOI: 10.1016/j.stem.2023.12.010
Shree Bose, Xiling Shen

Using an isogenic organoid platform to model pancreatic cancer, Duan et al. establish an important link between mutant KRAS and cholesterol metabolism and identify perhexiline maleate as a possible therapeutic to target this relationship.

Duan 等人利用异源类器官平台建立了胰腺癌模型,在突变 KRAS 与胆固醇代谢之间建立了重要联系,并确定马来酸培苯二胺是针对这种关系的一种可能疗法。
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引用次数: 0
Decoding aging-dependent regenerative decline across tissues at single-cell resolution. 以单细胞分辨率解码跨组织的衰老依赖性再生衰退。
Pub Date : 2023-12-07 Epub Date: 2023-10-27 DOI: 10.1016/j.stem.2023.09.014
Yusheng Cai, Muzhao Xiong, Zijuan Xin, Chengyu Liu, Jie Ren, Xiying Yang, Jinghui Lei, Wei Li, Feifei Liu, Qun Chu, Yiyuan Zhang, Jian Yin, Yanxia Ye, Dingyi Liu, Yanling Fan, Shuhui Sun, Yaobin Jing, Qian Zhao, Liyun Zhao, Shanshan Che, Yandong Zheng, Haoteng Yan, Shuai Ma, Si Wang, Juan Carlos Izpisua Belmonte, Jing Qu, Weiqi Zhang, Guang-Hui Liu

Regeneration across tissues and organs exhibits significant variation throughout the body and undergoes a progressive decline with age. To decode the relationships between aging and regenerative capacity, we conducted a comprehensive single-cell transcriptome analysis of regeneration in eight tissues from young and aged mice. We employed diverse analytical models to study tissue regeneration and unveiled the intricate cellular and molecular mechanisms underlying the attenuated regenerative processes observed in aged tissues. Specifically, we identified compromised stem cell mobility and inadequate angiogenesis as prominent contributors to this age-associated decline in regenerative capacity. Moreover, we discovered a unique subset of Arg1+ macrophages that were activated in young tissues but suppressed in aged regenerating tissues, suggesting their important role in age-related immune response disparities during regeneration. This study provides a comprehensive single-cell resource for identifying potential targets for interventions aimed at enhancing regenerative outcomes in the aging population.

跨组织和器官的再生在整个身体中表现出显著的变化,并随着年龄的增长而逐渐下降。为了解开衰老和再生能力之间的关系,我们对年轻和衰老小鼠的八种组织的再生进行了全面的单细胞转录组分析。我们采用了多种分析模型来研究组织再生,并揭示了在衰老组织中观察到的衰减再生过程背后的复杂细胞和分子机制。具体而言,我们发现干细胞活动性受损和血管生成不足是导致这种与年龄相关的再生能力下降的主要原因。此外,我们发现了一种独特的Arg1+巨噬细胞亚群,它们在年轻组织中被激活,但在老年再生组织中被抑制,这表明它们在再生过程中与年龄相关的免疫反应差异中发挥着重要作用。这项研究为确定旨在增强老龄化人群再生结果的干预措施的潜在目标提供了全面的单细胞资源。
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引用次数: 0
VEGFA mRNA-LNP promotes biliary epithelial cell-to-hepatocyte conversion in acute and chronic liver diseases and reverses steatosis and fibrosis. VEGFA mRNA-LNP在急性和慢性肝病中促进胆道上皮细胞向肝细胞的转化,并逆转脂肪变性和纤维化。
Pub Date : 2023-12-07 Epub Date: 2023-11-28 DOI: 10.1016/j.stem.2023.10.008
Fatima Rizvi, Yu-Ri Lee, Ricardo Diaz-Aragon, Pushpinder S Bawa, Juhoon So, Rodrigo M Florentino, Susan Wu, Arianna Sarjoo, Emily Truong, Anna R Smith, Feiya Wang, Elissa Everton, Alina Ostrowska, Kyounghwa Jung, Ying Tam, Hiromi Muramatsu, Norbert Pardi, Drew Weissman, Alejandro Soto-Gutierrez, Donghun Shin, Valerie Gouon-Evans

The liver is known for its remarkable regenerative ability through proliferation of hepatocytes. Yet, during chronic injury or severe hepatocyte death, proliferation of hepatocytes is exhausted. To overcome this hurdle, we propose vascular-endothelial-growth-factor A (VEGFA) as a therapeutic means to accelerate biliary epithelial-cell (BEC)-to-hepatocyte conversion. Investigation in zebrafish establishes that blocking VEGF receptors abrogates BEC-driven liver repair, while VEGFA overexpression promotes it. Delivery of VEGFA via nonintegrative and safe nucleoside-modified mRNA encapsulated into lipid nanoparticles (mRNA-LNPs) in acutely or chronically injured mouse livers induces robust BEC-to-hepatocyte conversion and elimination of steatosis and fibrosis. In human and murine diseased livers, we further identified VEGFA-receptor KDR-expressing BECs associated with KDR-expressing cell-derived hepatocytes. This work defines KDR-expressing cells, most likely being BECs, as facultative progenitors. This study reveals unexpected therapeutic benefits of VEGFA delivered via nucleoside-modified mRNA-LNP, whose safety is widely validated with COVID-19 vaccines, for harnessing BEC-driven repair to potentially treat liver diseases.

肝脏因其通过肝细胞增殖而具有显著的再生能力而闻名。然而,在慢性损伤或严重的肝细胞死亡过程中,肝细胞的增殖被耗尽。为了克服这一障碍,我们提出血管内皮生长因子A (VEGFA)作为加速胆道上皮细胞(BEC)向肝细胞转化的治疗手段。在斑马鱼中的研究表明,阻断VEGF受体会破坏becc驱动的肝脏修复,而VEGFA过表达则会促进这种修复。在急性或慢性损伤小鼠肝脏中,通过包裹在脂质纳米颗粒(mRNA- lnps)内的非整合和安全的核苷修饰mRNA递送VEGFA,可诱导bc到肝细胞的强大转化,并消除脂肪变性和纤维化。在人类和小鼠患病肝脏中,我们进一步鉴定了表达vegfa受体kdr的BECs与表达kdr的细胞源性肝细胞相关。这项工作将表达kdr的细胞(最有可能是BECs)定义为兼性祖细胞。这项研究揭示了通过核苷修饰的mRNA-LNP递送VEGFA的意想不到的治疗益处,其安全性已被COVID-19疫苗广泛验证,用于利用becc驱动的修复来潜在地治疗肝脏疾病。
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引用次数: 0
Epigenetic regulation of early human embryo development. 人类早期胚胎发育的表观遗传学调控。
Pub Date : 2023-12-07 Epub Date: 2023-10-18 DOI: 10.1016/j.stem.2023.09.010
Amy L Wilkinson, Irene Zorzan, Peter J Rugg-Gunn

Studies of mammalian development have advanced our understanding of the genetic, epigenetic, and cellular processes that orchestrate embryogenesis and have uncovered new insights into the unique aspects of human embryogenesis. Recent studies have now produced the first epigenetic maps of early human embryogenesis, stimulating new ideas about epigenetic reprogramming, cell fate control, and the potential mechanisms underpinning developmental plasticity in human embryos. In this review, we discuss these new insights into the epigenetic regulation of early human development and the importance of these processes for safeguarding development. We also highlight unanswered questions and key challenges that remain to be addressed.

对哺乳动物发育的研究促进了我们对协调胚胎发生的遗传、表观遗传和细胞过程的理解,并揭示了对人类胚胎发生独特方面的新见解。最近的研究已经产生了人类早期胚胎发生的第一张表观遗传学图谱,激发了关于表观遗传学重编程、细胞命运控制以及支撑人类胚胎发育可塑性的潜在机制的新想法。在这篇综述中,我们讨论了这些对人类早期发育的表观遗传学调控的新见解,以及这些过程对保护发育的重要性。我们还强调了尚未解决的问题和有待解决的主要挑战。
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引用次数: 0
TGFB1 induces fetal reprogramming and enhances intestinal regeneration. TGFB1诱导胎儿重编程并增强肠道再生。
Pub Date : 2023-11-02 Epub Date: 2023-10-20 DOI: 10.1016/j.stem.2023.09.015
Lei Chen, Xia Qiu, Abigail Dupre, Oscar Pellon-Cardenas, Xiaojiao Fan, Xiaoting Xu, Prateeksha Rout, Katherine D Walton, Joseph Burclaff, Ruolan Zhang, Wenxin Fang, Rachel Ofer, Alexandra Logerfo, Kiranmayi Vemuri, Sheila Bandyopadhyay, Jianming Wang, Gaetan Barbet, Yan Wang, Nan Gao, Ansu O Perekatt, Wenwei Hu, Scott T Magness, Jason R Spence, Michael P Verzi

The gut epithelium has a remarkable ability to recover from damage. We employed a combination of high-throughput sequencing approaches, mouse genetics, and murine and human organoids and identified a role for TGFB signaling during intestinal regeneration following injury. At 2 days following irradiation (IR)-induced damage of intestinal crypts, a surge in TGFB1 expression is mediated by monocyte/macrophage cells at the location of damage. The depletion of macrophages or genetic disruption of TGFB signaling significantly impaired the regenerative response. Intestinal regeneration is characterized by the induction of a fetal-like transcriptional signature during repair. In organoid culture, TGFB1 treatment was necessary and sufficient to induce the fetal-like/regenerative state. Mesenchymal cells were also responsive to TGFB1 and enhanced the regenerative response. Mechanistically, pro-regenerative factors, YAP/TEAD and SOX9, are activated in the epithelium exposed to TGFB1. Finally, pre-treatment with TGFB1 enhanced the ability of primary epithelial cultures to engraft into damaged murine colon, suggesting promise for cellular therapy.

肠道上皮细胞具有显著的从损伤中恢复的能力。我们结合高通量测序方法、小鼠遗传学、小鼠和人类类器官,确定了TGFB信号在损伤后肠道再生中的作用。在辐射(IR)诱导的肠隐窝损伤后2天,损伤部位的单核细胞/巨噬细胞介导TGFB1表达激增。巨噬细胞的耗竭或TGFB信号的遗传破坏显著损害了再生反应。肠道再生的特征是在修复过程中诱导胎儿样转录信号。在类器官培养中,TGFB1处理对于诱导胎儿样/再生状态是必要和充分的。间充质细胞对TGFB1也有反应,并增强了再生反应。从机制上讲,促再生因子YAP/TEAD和SOX9在暴露于TGFB1的上皮中被激活。最后,用TGFB1预处理增强了原代上皮培养物植入受损小鼠结肠的能力,这表明有希望进行细胞治疗。
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引用次数: 0
Stem cell mutations, associated cancer risk, and consequences for regenerative medicine. 干细胞突变,相关的癌症风险,以及再生医学的后果。
Pub Date : 2023-11-02 Epub Date: 2023-10-12 DOI: 10.1016/j.stem.2023.09.008
Lucca L M Derks, Ruben van Boxtel

Mutation accumulation in stem cells has been associated with cancer risk. However, the presence of numerous mutant clones in healthy tissues has raised the question of what limits cancer initiation. Here, we review recent developments in characterizing mutation accumulation in healthy tissues and compare mutation rates in stem cells during development and adult life with corresponding cancer risk. A certain level of mutagenesis within the stem cell pool might be beneficial to limit the size of malignant clones through competition. This knowledge impacts our understanding of carcinogenesis with potential consequences for the use of stem cells in regenerative medicine.

干细胞中的突变积累与癌症风险相关。然而,健康组织中大量突变克隆的存在引发了一个问题,即是什么限制了癌症的发生。在此,我们回顾了表征健康组织中突变积累的最新进展,并比较了干细胞在发育和成年生活中的突变率与相应的癌症风险。干细胞库中一定水平的诱变可能有利于通过竞争限制恶性克隆的大小。这一知识影响了我们对致癌作用的理解,并对干细胞在再生医学中的应用产生潜在影响。
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引用次数: 0
期刊
Cell stem cell
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