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Integrated single-cell analysis defines the epigenetic basis of castration-resistant prostate luminal cells. 单细胞综合分析确定了耐阉割前列腺管腔细胞的表观遗传学基础。
IF 20.4 Pub Date : 2024-08-01 Epub Date: 2024-06-14 DOI: 10.1016/j.stem.2024.05.008
Jason S Kirk, Jie Wang, Mark Long, Spencer Rosario, Amanda Tracz, Yibing Ji, Rahul Kumar, Xiaozhuo Liu, Anmbreen Jamroze, Prashant K Singh, Igor Puzanov, Gurkamal Chatta, Qing Cheng, Jiaoti Huang, Jeffrey L Wrana, Jonathan Lovell, Han Yu, Song Liu, Michael M Shen, Tao Liu, Dean G Tang

Understanding prostate response to castration and androgen receptor signaling inhibitors (ARSI) is critical to improving long-term prostate cancer (PCa) patient survival. Here, we use a multi-omics approach on 229,794 single cells to create a mouse single-cell reference atlas for interpreting mouse prostate biology and castration response. Our reference atlas refines single-cell annotations and provides a chromatin context, which, when coupled with mouse lineage tracing, demonstrates that castration-resistant luminal cells are distinct from the pre-existent urethra-proximal stem/progenitor cells. Molecular pathway analysis and therapeutic studies further implicate AP1 (JUN/FOS), WNT/β-catenin, FOXQ1, NF-κB, and JAK/STAT pathways as major drivers of castration-resistant luminal populations with relevance to human PCa. Our datasets, which can be explored through an interactive portal (https://visportal.roswellpark.org/data/tang/), can aid in developing combination treatments with ARSI for advanced PCa patients.

了解前列腺对阉割和雄激素受体信号抑制剂(ARSI)的反应对于提高前列腺癌(PCa)患者的长期生存率至关重要。在这里,我们采用多组学方法对 229,794 个单细胞进行研究,建立了小鼠单细胞参考图谱,用于解释小鼠前列腺生物学和阉割反应。我们的参考图谱完善了单细胞注释并提供了染色质背景,结合小鼠系谱追踪,证明了耐阉割管腔细胞有别于之前存在的尿道近端干细胞/祖细胞。分子通路分析和治疗研究进一步表明,AP1(JUN/FOS)、WNT/β-catenin、FOXQ1、NF-κB 和 JAK/STAT 通路是阉割耐药管腔细胞的主要驱动因素,与人类 PCa 相关。我们的数据集可通过互动门户网站(https://visportal.roswellpark.org/data/tang/)进行浏览,有助于开发针对晚期PCa患者的ARSI联合疗法。
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引用次数: 0
Oscillation steers differentiation. 震荡引导分化。
Pub Date : 2024-07-05 DOI: 10.1016/j.stem.2024.06.008
Kyle A LaBella, Efren A Reyes, Louis Vermeulen

The differentiation trajectories defining enteroendocrine (EE) cell heterogeneity remain obscure. In this issue of Cell Stem Cell, Singh et al.1 map the differentiation landscape of EE cells, identifying early oscillating cell progenitor states, which play a critical role in generating terminal EE cell diversity.

定义肠内分泌(EE)细胞异质性的分化轨迹仍然模糊不清。在本期《细胞干细胞》(Cell Stem Cell)杂志上,辛格等人1绘制了肠内分泌细胞的分化图谱,确定了早期振荡细胞祖细胞状态,这种状态在产生终端肠内分泌细胞多样性方面发挥着关键作用。
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引用次数: 0
Monkey see, monkey do: Tracking iPS-cardiomyocyte survival and maturation in autografts. 猴子看,猴子干:跟踪 iPS 心肌细胞在自体移植物中的存活和成熟。
Pub Date : 2024-07-05 DOI: 10.1016/j.stem.2024.06.006
Xiaoqian Ji, Qiyuan Wang, Nan Cao

Induced pluripotent stem cell-derived cardiomyocyte (iPSC-CM) therapy has emerged as a highly promising field of heart repair. Lin et al.1 presented compelling evidence on the long-term engraftment and maturation of autologous iPSC-CMs in two rhesus macaques, demonstrating unprecedented cardiac autografting data in large animal models without the need of immunosuppressants.

诱导多能干细胞衍生心肌细胞(iPSC-CM)疗法已成为极具前景的心脏修复领域。Lin等人1提出了令人信服的证据,证明自体iPSC-CMs在两只猕猴体内的长期移植和成熟,在大型动物模型中展示了前所未有的心脏自体移植数据,且无需使用免疫抑制剂。
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引用次数: 0
Cultivating awareness of donation in cutting-edge allogenic cell therapies. 在最前沿的异基因细胞疗法中培养捐赠意识。
Pub Date : 2024-07-05 DOI: 10.1016/j.stem.2024.06.002
Oscar Andrusier, Aviad Raz, Jusaku Minari
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引用次数: 0
Activation of fetal-like molecular programs during regeneration in the intestine and beyond. 在肠道再生及其他过程中激活胎儿样分子程序
Pub Date : 2024-07-05 DOI: 10.1016/j.stem.2024.05.009
Sara Viragova, Dong Li, Ophir D Klein

Tissue regeneration after damage is generally thought to involve the mobilization of adult stem cells that divide and differentiate into progressively specialized progeny. However, recent studies indicate that tissue regeneration can be accompanied by reversion to a fetal-like state. During this process, cells at the injury site reactivate programs that operate during fetal development but are typically absent in adult homeostasis. Here, we summarize our current understanding of the molecular signals and epigenetic mediators that orchestrate "fetal-like reversion" during intestinal regeneration. We also explore evidence for this phenomenon in other organs and species and highlight open questions that merit future examination.

损伤后的组织再生通常被认为涉及成体干细胞的动员,这些干细胞分裂并分化成逐渐特化的后代。然而,最近的研究表明,组织再生可能伴随着恢复到类似胎儿的状态。在这一过程中,损伤部位的细胞会重新激活在胎儿发育过程中运行、但在成人稳态中通常不存在的程序。在此,我们总结了目前我们对在肠道再生过程中协调 "类胎儿还原 "的分子信号和表观遗传介质的理解。我们还探讨了这一现象在其他器官和物种中的证据,并强调了值得未来研究的开放性问题。
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引用次数: 0
Unraveling the function of FGF signaling in human hypoblast specialization. 揭示 FGF 信号在人类低分化母细胞特化过程中的功能。
Pub Date : 2024-07-05 DOI: 10.1016/j.stem.2024.06.010
Hao Wu, Jinglei Zhai, Hongmei Wang

Dattani et al.1 developed a method for inducing hypoblast-like cells from human naive pluripotent stem cells. They elucidated the requirement for FGF signaling in human hypoblast specialization at a specific time window, which was previously controversial.

Dattani 等人1 开发了一种从人类幼稚多能干细胞中诱导出低分化母细胞样细胞的方法。他们阐明了在特定的时间窗口内,人的低母细胞特化需要 FGF 信号,而这在以前是有争议的。
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引用次数: 0
Subventricular zone stem cell niche injury is associated with intestinal perforation in preterm infants and predicts future motor impairment. 脑室下区干细胞龛损伤与早产儿肠穿孔有关,并可预测未来的运动障碍。
Pub Date : 2024-04-04 Epub Date: 2024-03-26 DOI: 10.1016/j.stem.2024.03.001
Adrian A Epstein, Sara N Janos, Luca Menozzi, Kelly Pegram, Vaibhav Jain, Logan C Bisset, Joseph T Davis, Samantha Morrison, Aswathy Shailaja, Yingqiu Guo, Agnes S Chao, Khadar Abdi, Blaire Rikard, Junjie Yao, Simon G Gregory, Kimberley Fisher, Rick Pittman, Al Erkanli, Kathryn E Gustafson, Caroline W T Carrico, William F Malcolm, Terrie E Inder, C Michael Cotten, Trevor D Burt, Mari L Shinohara, Charles M Maxfield, Eric J Benner

Brain injury is highly associated with preterm birth. Complications of prematurity, including spontaneous or necrotizing enterocolitis (NEC)-associated intestinal perforations, are linked to lifelong neurologic impairment, yet the mechanisms are poorly understood. Early diagnosis of preterm brain injuries remains a significant challenge. Here, we identified subventricular zone echogenicity (SVE) on cranial ultrasound in preterm infants following intestinal perforations. The development of SVE was significantly associated with motor impairment at 2 years. SVE was replicated in a neonatal mouse model of intestinal perforation. Examination of the murine echogenic subventricular zone (SVZ) revealed NLRP3-inflammasome assembly in multiciliated FoxJ1+ ependymal cells and a loss of the ependymal border in this postnatal stem cell niche. These data suggest a mechanism of preterm brain injury localized to the SVZ that has not been adequately considered. Ultrasound detection of SVE may serve as an early biomarker for neurodevelopmental impairment after inflammatory disease in preterm infants.

脑损伤与早产关系密切。早产并发症,包括自发性或坏死性小肠结肠炎(NEC)相关的肠穿孔,与终生神经功能损伤有关,但其机制却鲜为人知。早产儿脑损伤的早期诊断仍是一项重大挑战。在这里,我们通过头颅超声波确定了肠穿孔早产儿脑室下区回声(SVE)。SVE的出现与2岁时的运动障碍有明显关联。SVE在新生小鼠肠穿孔模型中得到了复制。对小鼠室管膜下区(SVZ)的回声检查发现,在多纤毛FoxJ1+上皮细胞中组装了NLRP3-炎症小体,并且在这个产后干细胞龛中丧失了上皮细胞边界。这些数据表明,早产儿脑损伤的机制定位在SVZ,而这一点尚未得到充分考虑。超声检测SVE可作为早产儿炎症后神经发育受损的早期生物标志物。
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引用次数: 0
Lung repair and regeneration: Advanced models and insights into human disease. 肺修复与再生:先进的模型和对人类疾病的见解。
Pub Date : 2024-04-04 Epub Date: 2024-03-15 DOI: 10.1016/j.stem.2024.02.009
Maria C Basil, Konstantinos-Dionysios Alysandratos, Darrell N Kotton, Edward E Morrisey

The respiratory system acts as both the primary site of gas exchange and an important sensor and barrier to the external environment. The increase in incidences of respiratory disease over the past decades has highlighted the importance of developing improved therapeutic approaches. This review will summarize recent research on the cellular complexity of the mammalian respiratory system with a focus on gas exchange and immunological defense functions of the lung. Different models of repair and regeneration will be discussed to help interpret human and animal data and spur the investigation of models and assays for future drug development.

呼吸系统既是气体交换的主要场所,也是外界环境的重要传感器和屏障。过去几十年来,呼吸系统疾病发病率的上升凸显了开发更好的治疗方法的重要性。本综述将总结哺乳动物呼吸系统细胞复杂性的最新研究,重点关注肺的气体交换和免疫防御功能。将讨论不同的修复和再生模型,以帮助解释人类和动物数据,并促进对未来药物开发模型和检测方法的研究。
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引用次数: 0
Preclinical efficacy and safety of encapsulated proliferating human hepatocyte organoids in treating liver failure. 封装增殖人肝细胞器官组织治疗肝衰竭的临床前疗效和安全性。
Pub Date : 2024-04-04 Epub Date: 2024-03-07 DOI: 10.1016/j.stem.2024.02.005
Xiang Yuan, Jingqi Wu, Zhen Sun, Jin Cen, Yajing Shu, Chenhua Wang, Hong Li, Dongni Lin, Kun Zhang, Baihua Wu, Anil Dhawan, Ludi Zhang, Lijian Hui

Alginate-encapsulated hepatocyte transplantation is a promising strategy to treat liver failure. However, its clinical application was impeded by the lack of primary human hepatocytes and difficulty in controlling their quality. We previously reported proliferating human hepatocytes (ProliHHs). Here, quality-controlled ProliHHs were produced in mass and engineered as liver organoids to improve their maturity. Encapsulated ProliHHs liver organoids (eLO) were intraperitoneally transplanted to treat liver failure animals. Notably, eLO treatment increased the survival of mice with post-hepatectomy liver failure (PHLF) and ameliorated hyperammonemia and hypoglycemia by providing liver functions. Additionally, eLO treatment protected the gut from PHLF-augmented permeability and normalized the increased serum endotoxin and inflammatory response, which facilitated liver regeneration. The therapeutic effect of eLO was additionally proved in acetaminophen-induced liver failure. Furthermore, we performed assessments of toxicity and biodistribution, demonstrating that eLO had no adverse effects on animals and remained non-tumorigenic.

藻酸盐包裹肝细胞移植是治疗肝功能衰竭的一种很有前景的策略。然而,由于缺乏原代人类肝细胞且难以控制其质量,其临床应用受到了阻碍。我们曾报道过增殖人肝细胞(ProliHHs)。在这里,我们批量生产了质量可控的 ProliHHs,并将其设计为肝脏器官组织,以提高其成熟度。将封装的ProliHHs肝脏器官组织(eLO)腹腔移植治疗肝衰竭动物。值得注意的是,eLO治疗提高了肝切除术后肝衰竭(PHLF)小鼠的存活率,并通过提供肝功能改善了高氨血症和低血糖症。此外,eLO 还能保护肠道免受 PHLF 导致的渗透性增强的影响,并使增加的血清内毒素和炎症反应恢复正常,从而促进肝脏再生。在对乙酰氨基酚诱导的肝衰竭中,eLO 的治疗效果也得到了证实。此外,我们还对毒性和生物分布进行了评估,结果表明 eLO 对动物没有不良影响,也不会致癌。
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引用次数: 0
Autofluorescence is a biomarker of neural stem cell activation state. 自发荧光是神经干细胞活化状态的生物标记。
Pub Date : 2024-04-04 Epub Date: 2024-03-22 DOI: 10.1016/j.stem.2024.02.011
Christopher S Morrow, Kelsey Tweed, Sabina Farhadova, Alex J Walsh, Bo P Lear, Avtar Roopra, Ryan D Risgaard, Payton C Klosa, Zachary P Arndt, Ella R Peterson, Michelle M Chi, Allison G Harris, Melissa C Skala, Darcie L Moore

Neural stem cells (NSCs) must exit quiescence to produce neurons; however, our understanding of this process remains constrained by the technical limitations of current technologies. Fluorescence lifetime imaging (FLIM) of autofluorescent metabolic cofactors has been used in other cell types to study shifts in cell states driven by metabolic remodeling that change the optical properties of these endogenous fluorophores. Using this non-destructive, live-cell, and label-free strategy, we found that quiescent NSCs (qNSCs) and activated NSCs (aNSCs) have unique autofluorescence profiles. Specifically, qNSCs display an enrichment of autofluorescence localizing to a subset of lysosomes, which can be used as a graded marker of NSC quiescence to predict cell behavior at single-cell resolution. Coupling autofluorescence imaging with single-cell RNA sequencing, we provide resources revealing transcriptional features linked to deep quiescence and rapid NSC activation. Together, we describe an approach for tracking mouse NSC activation state and expand our understanding of adult neurogenesis.

神经干细胞(NSC)必须退出静止期才能产生神经元;然而,我们对这一过程的了解仍然受到现有技术的限制。自发荧光代谢辅因子的荧光寿命成像(FLIM)已被用于其他细胞类型,以研究细胞状态在代谢重塑驱动下的转变,代谢重塑改变了这些内源性荧光团的光学特性。利用这种非破坏性、活细胞和无标记的策略,我们发现静止的 NSCs(qNSCs)和活化的 NSCs(aNSCs)具有独特的自发荧光特征。具体来说,qNSCs 的自发荧光富集于溶酶体亚群,可作为 NSC 静止的分级标记,以单细胞分辨率预测细胞行为。将自发荧光成像与单细胞 RNA 测序结合起来,我们提供了揭示与深度静止和快速 NSC 激活相关的转录特征的资源。我们共同描述了一种跟踪小鼠 NSC 激活状态的方法,并拓展了我们对成体神经发生的理解。
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引用次数: 0
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Cell stem cell
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