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Eicosatetraynoic Acid Regulates Profibrotic Pathways in an Induced Pluripotent Stem Cell-Derived Macrophage-Human Intestinal Organoid Model of Crohn's Disease. 二十碳四烯酸调控诱导多能干细胞衍生巨噬细胞:克罗恩病人类肠道类器官模型中的促纤维化途径
Pub Date : 2025-02-04 DOI: 10.1093/ecco-jcc/jjae139
Ingrid Jurickova, Benjamin W Dreskin, Elizabeth Angerman, Erin Bonkowski, Jack Nguyen, Richard Villarreal, Kentaro Tominaga, Kentaro Iwasawa, Tzipi Braun, Takanori Takebe, Michael A Helmrath, Yael Haberman, James M Wells, Lee A Denson

Background and aims: We previously identified small molecules predicted to reverse an ileal gene signature for future Crohn's Disease (CD) strictures. Here we used a new human intestinal organoid (HIO) model system containing macrophages to test a lead candidate, eicosatetraynoic acid (ETYA).

Methods: Induced pluripotent stem cell lines (iPSC) were derived from CD patients and differentiated into macrophages and HIOs. Macrophages and macrophage-HIO cocultures were exposed to lipopolysaccharide (LPS) with and without ETYA pretreatment. Cytospin and flow cytometry characterized macrophage morphology and activation markers, and RNA sequencing defined the global pattern of macrophage gene expression. TaqMan low-density array, Luminex multiplex assay, immunohistologic staining, and sirius red polarized light microscopy were performed to measure macrophage cytokine production and HIO profibrotic gene expression and collagen content.

Results: Induced PSC-derived macrophages exhibited morphology similar to primary macrophages and expressed inflammatory macrophage cell surface markers including CD64 and CD68. LPS-stimulated macrophages expressed a global pattern of gene expression enriched in CD ileal inflammatory macrophages and matrisome-secreted products and produced cytokines and chemokines including CCL2, IL1B, and OSM implicated in refractory disease. ETYA suppressed CD64 abundance and profibrotic gene expression pathways in LPS-stimulated macrophages. Coculture of LPS-primed macrophages with HIO led to upregulation of fibroblast activation genes including ACTA2 and COL1A1, and an increase in HIO collagen content. ETYA pretreatment prevented profibrotic effects of LPS-primed macrophages.

Conclusions: ETYA inhibits profibrotic effects of LPS-primed macrophages upon cocultured HIO. This model may be used in future untargeted screens for small molecules to treat refractory CD.

背景和目的:我们之前发现了一些小分子,这些小分子可逆转未来克罗恩病(CD)狭窄的回肠基因特征。在这里,我们使用一种新的含有巨噬细胞的人体肠道类器官(HIO)模型系统来测试一种主要候选药物--二十碳四炔酸(ETYA):方法:诱导多能干细胞系(iPSC)来源于CD患者,并分化成巨噬细胞和HIO。将巨噬细胞和巨噬细胞:HIO共培养物暴露于经或未经ETYA预处理的脂多糖(LPS)中。细胞计数法和流式细胞术描述了巨噬细胞的形态和活化标记,RNA测序确定了巨噬细胞基因表达的整体模式。结果:iPSC衍生的巨噬细胞表现出与原代巨噬细胞相似的形态,并表达包括CD64和CD68在内的炎性巨噬细胞表面标记物。LPS刺激下的巨噬细胞表达了富含CD回肠炎症巨噬细胞和matrisome分泌产物的全局基因表达模式,并产生了与难治性疾病有关的细胞因子和趋化因子,包括CCL2、IL1B和OSM。ETYA 可抑制 LPS 刺激巨噬细胞中的 CD64 丰度和促纤维化基因表达途径。LPS刺激的巨噬细胞与HIO共培养会导致成纤维细胞活化基因(包括ACTA2和COL1A1)上调,并增加HIO胶原蛋白含量。ETYA预处理可防止LPS诱导的巨噬细胞产生促纤维化效应:结论:ETYA 可抑制 LPS 诱导的巨噬细胞对共培养 HIO 的促纤维化作用。该模型可用于未来治疗难治性 CD 的小分子非靶向筛选。
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引用次数: 0
Correction to: Ulcerative Colitis Severity Classification and Localized Extent (UC-SCALE): An Artificial Intelligence Scoring System for a Spatial Assessment of Disease Severity in Ulcerative Colitis. 更正:溃疡性结肠炎严重程度分类和局部范围(UC-SCALE):用于溃疡性结肠炎疾病严重程度空间评估的人工智能评分系统。
Pub Date : 2025-02-04 DOI: 10.1093/ecco-jcc/jjaf031
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引用次数: 0
Systematic review on definitions of intestinal ultrasound treatment response and remission in inflammatory bowel disease. 炎症性肠病肠超声治疗反应和缓解定义的系统综述。
Pub Date : 2025-02-04 DOI: 10.1093/ecco-jcc/jjaf011
Mariangela Allocca, Ferdinando D'Amico, Gionata Fiorino, Vipul Jairath, Torsten Kucharzik, Laurent Peyrin-Biroulet, Silvio Danese

Background: Intestinal ultrasound (IUS) is emerging as a valuable tool to assess treatment response in inflammatory bowel disease (IBD) clinical trials. This study details how IUS defines response and remission to evaluate treatment efficacy in IBD patients.

Methods: We conducted a comprehensive search of studies from 1984 to March 31, 2024, focusing on IUS use in assessing treatment efficacy in IBD.

Results: A total of 51 studies were included: 31 on Crohn's disease (CD), 12 on ulcerative colitis (UC) and 8 on IBD. Ileocolonoscopy was used as a reference standard in 53% of studies. IUS-defined response was reported in 47% of studies, with the majority (71%) using changes in bowel wall thickness (BWT) and color Doppler signals (CDS) as key indicators. IUS-defined remission was reported in 53% of studies, primarily using normalization of BWT to <3 mm and CDS to grades 0 or 1 as criteria. Ultrasonographic activity scores were used in 16% of studies, including the Bowel Ultrasound Score (BUSS) in two CD studies, the International Bowel Ultrasound Segmental Activity Score (IBUS-SAS) in one CD study, and the Milan Ultrasound Criteria (MUC) in one UC study The remaining four studies used unvalidated scores without clear definitions of response or remission. Assessment times varied, most commonly at weeks 8-16, and at 6, 12, and 24 months.

Conclusions: This systematic review reveals significant variability in IUS definitions of response and remission in IBD, highlighting the need to standardize eligibility criteria and outcome measures for IUS in IBD clinical trials.

背景:肠道超声(IUS)正在成为评估炎症性肠病(IBD)临床试验中治疗反应的一种有价值的工具。本研究详细介绍了IUS如何定义缓解和缓解,以评估IBD患者的治疗效果。方法:我们对1984年至2024年3月31日期间的研究进行了全面检索,重点关注在IBD治疗效果评估中使用IUS。结果:共纳入51项研究:31项关于克罗恩病(CD), 12项关于溃疡性结肠炎(UC), 8项关于IBD。53%的研究将回肠结肠镜检查作为参考标准。47%的研究报告了ius定义的反应,其中大多数(71%)使用肠壁厚度(BWT)和彩色多普勒信号(CDS)作为关键指标。53%的研究报告了ius定义的缓解,主要使用BWT正常化到小于3mm和CDS到0或1级作为标准。16%的研究使用了超声活动评分,包括两项CD研究中的肠超声评分(BUSS),一项CD研究中的国际肠超声节段活动评分(IBUS-SAS),一项UC研究中的米兰超声标准(MUC)。其余四项研究使用未经验证的评分,没有明确的反应或缓解定义。评估时间各不相同,最常见的是在8-16周、6个月、12个月和24个月。结论:本系统综述揭示了IBD缓解和缓解的IUS定义存在显著差异,强调需要标准化IBD临床试验中IUS的资格标准和结果测量。
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引用次数: 0
Comparative Efficacy of Novel Biologics, Anti-tumor Necrosis Factor Agents, and Immunomodulators to Prevent Postoperative Recurrence in Crohn's Disease: A Systematic Review and Network Meta-analysis. 新型生物制剂、抗肿瘤坏死因子制剂和免疫调节剂预防克罗恩病术后复发的疗效比较:系统综述与网络 Meta 分析》。
Pub Date : 2025-02-04 DOI: 10.1093/ecco-jcc/jjae143
Shihao Duan, Pingrun Chen, Chang Liang, Yan Zhang

Background and aims: Our objective was to compare the efficacy of novel biologics (such as vedolizumab and ustekinumab), anti-tumor necrosis factor (anti-TNF) agents, and immunomodulators (IMMs) in preventing postoperative recurrence (POR) of Crohn's disease (CD).

Methods: We searched the PubMed, Embase, and the Cochrane Library databases up to December 2023 to identify placebo-controlled, no-treatment comparison, or positive-controlled studies for the prevention of POR in CD. Endoscopic recurrence and clinical recurrence were the primary and secondary endpoints for the efficacy assessment. We conducted traditional direct and Bayesian network meta-analyses to evaluate the preventive effects of selected drugs. Additionally, we ranked interventions based on their scores under the Surface Under the Cumulative Ranking curve (SUCRA).

Results: A total of 17 studies involving 2786 patients were included. In the direct meta-analysis, anti-TNFs, vedolizumab, and IMMs showed greater efficacy in preventing endoscopic POR, compared with controls (placebo or no treatment). In preventing clinical POR, anti-TNFs and IMMs outperformed the controls. The network meta-analysis revealed that the risk of endoscopic POR was considerably lower in patients receiving anti-TNFs, vedolizumab, and ustekinumab compared with controls. Regarding the reduction of clinical POR, only anti-TNFs showed significant efficacy compared with controls. Vedolizumab and anti-TNFs were ranked as the most effective strategies in preventing endoscopic and clinical recurrence, respectively.

Conclusions: According to direct and network meta-analysis, in CD patients after surgical resection, novel biologics, especially vedolizumab, were quite effective in decreasing the risk of endoscopic POR, whereas anti-TNFs appeared to perform best in reducing the risk of clinical POR.

背景与目的我们的目的是比较新型生物制剂(如维妥珠单抗和乌斯特库单抗)、抗肿瘤坏死因子制剂(anti-TNFs)和免疫调节剂(IMMs)在预防克罗恩病(CD)术后复发(POR)方面的疗效:我们检索了截至 2023 年 12 月的 PubMed、Embase 和 Cochrane Library 数据库,以确定预防 CD 术后复发的安慰剂对照、无治疗比较或阳性对照研究。内镜和临床复发是疗效评估的主要和次要终点。我们进行了传统的直接分析和贝叶斯网络荟萃分析,以评估所选药物的预防效果。此外,我们还根据干预措施在累积排名曲线(Surface Under the Cumulative Ranking curve,SUCRA)下的得分进行了排名:结果:共纳入了 17 项研究,涉及 2786 名患者。在直接荟萃分析中,与对照组(安慰剂或不治疗)相比,抗肿瘤坏死因子、维多利珠单抗和IMM在预防内镜下POR方面显示出更大的疗效。在预防临床POR方面,抗肿瘤坏死因子和IMMs的疗效优于对照组。网络荟萃分析显示,与对照组相比,接受抗肿瘤坏死因子、维妥珠单抗和乌司替尼治疗的患者发生内镜下POR的风险要低得多。在降低临床 POR 方面,与对照组相比,只有抗肿瘤坏死因子具有显著疗效。在预防内镜复发和临床复发方面,维多珠单抗和抗肿瘤坏死因子分别被评为最有效的策略:根据直接分析和网络荟萃分析,对于手术切除后的 CD 患者,新型生物制剂,尤其是维多珠单抗,在降低内镜下 POR 风险方面相当有效,而抗 TNFs 在降低临床 POR 风险方面似乎表现最佳。
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引用次数: 0
Assessment of activity and severity of inflammatory bowel disease in cross-sectional imaging techniques: a systematic review.
Pub Date : 2025-02-04 DOI: 10.1093/ecco-jcc/jjaf023
Arianna Dal Buono, Francesco Faita, Alessandro Armuzzi, Vipul Jairath, Laurent Peyrin-Biroulet, Silvio Danese, Mariangela Allocca

Background and aims: Cross-sectional imaging techniques, including intestinal ultrasonography (IUS), computed tomography enterography (CTE), magnetic resonance enterography (MRE), are increasingly used for the evaluation of inflammatory bowel diseases (IBD). We aimed to systematically review literature evidence on the assessment of disease activity, and/or severity through cross-sectional imaging in IBD patients, and to offer guidance on their most effective utilization.

Methods: We performed a systematic review of PubMed, EMBASE, and Scopus to identify citations pertaining to the assessment of disease activity and/or severity at cross-sectional imaging techniques compared to a reference standard (ie, other radiological techniques, endoscopy, histopathology, and surgery) in IBD patients published until December 2023.

Results: Overall, 179 papers published between 1990 and 2023 were included, with a total of 10 988 IBD patients (9304 Crohn's disease [84.7%], 1206 ulcerative colitis [11.0%], 38 IBD-U [0.3%], 440 unspecified [4.0%]). Of the 179 studies, 39 investigated IUS, 22/179 CTE, and 101/179 MRE. In the remaining papers, 2 techniques were addressed together. In 81.6% of the papers, endoscopy (with or without histopathology) was used as a reference standard. All studies included evaluated disease activity, while just over half (100/179, 55.8%) also evaluated disease severity of the addressed cross-sectional methodology. Pooled sensitivity, specificity, and overall accuracy of IUS, MRE, and CTE compared to the reference standard were 60%-99%, 60%-100%, and 70%-99%, respectively.

Conclusions: All cross-sectional imaging techniques demonstrated moderate-to-good accuracy in assessing disease activity and severity of IBD. This finding highlights the potential, especially for MRE and IUS to be widely utilized in managing IBD in both clinical practice and clinical trials.

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引用次数: 0
The Costs of Home Monitoring by Telemedicine vs Standard Care for Inflammatory Bowel Diseases-A Danish Register-Based, 5-Year Follow-up Study. 通过远程医疗对炎症性肠病进行家庭监测与标准护理的成本对比--一项基于丹麦登记册的五年跟踪研究。
Pub Date : 2025-02-04 DOI: 10.1093/ecco-jcc/jjae120
Marwah Al-Sheikh, Dorit Vedel Ankersen, Jens Olsen, Maria Spanggaard, Charlotte T Peters-Lehm, Rahim M Naimi, Mette Bennedsen, Johan Burisch, Pia Munkholm

Background and aims: There are few studies on the cost-effectiveness of telemedicine for inflammatory bowel diseases. We assessed the long-term cost-effectiveness of a telemedicine solution compared to standard care (sCare), as well as its efficacy according to patient-reported outcomes (PROs).

Methods: Between 2015 and 2020, we conducted a retrospective, register-based study among patients with ulcerative colitis and Crohn's disease. Direct and indirect healthcare costs over a 5-year period were obtained from Danish registers and compared to a control group. Costs were estimated on a yearly basis from 1 year before, until 5 years after, inclusion in the trial. Patients were divided into 2 groups: those not receiving biologics (Cohort 1) and those receiving biologics (Cohort 2).

Results: We recruited 574 patients with inflammatory bowel diseases. In Cohort 1 (61.5%), average total direct costs and total earnings per patient per year were €14 043 and €307 793, respectively, in telemedicine compared to €16 226 and €252 166, respectively, in sCare. In Cohort 2 (38.5%), average total direct costs and total earnings were €73 916 and €215 833, respectively, in telemedicine compared to €41 748 and €203 667, respectively, in sCare. PROs showed improved quality of life, which was higher in Cohort 1 than in Cohort 2. Disease activity among patients with Crohn's disease increased after Years 3 and 4 in Cohorts 1 and 2, respectively.

Conclusion: Telemedicine is cost-effective for patients not receiving biologics. However, treatment with biologics is more expensive for patients enrolled in telemedicine. Careful attention to PROs in telemedicine improves quality of life and could prolong the time to relapse.

背景和目的:有关炎症性肠病(IBD)远程医疗成本效益的研究很少。我们评估了远程医疗解决方案(eCare)与标准护理(sCare)相比的长期成本效益,以及根据患者报告结果(PRO)得出的疗效:在 2015 年至 2020 年期间,我们对溃疡性结肠炎(UC)和克罗恩病(CD)患者进行了一项基于登记的回顾性研究。我们从丹麦登记册中获取了五年内的直接和间接医疗成本,并与对照组进行了比较。从加入试验前一年到加入试验后五年,每年的成本都进行了估算。患者被分为未接受生物制剂治疗组(第一组)和接受生物制剂治疗组(第二组):我们招募了 574 名 IBD 患者。在组群 1(61.5%)中,eCare 的每位患者每年平均直接总成本和总收入分别为 14,043 欧元和 307,793 欧元,而 sCare 为 16,226 欧元和 252,166 欧元。在队列 2(38.5%)中,eCare 的平均直接总成本和总收入分别为 73,916 欧元和 215,833 欧元,而 sCare 为 41,748 欧元和 203,667 欧元。PRO显示生活质量在不断提高,且第一组患者的生活质量高于第二组患者。第一组和第二组 CD 患者的疾病活动分别在第 3 年和第 4 年后有所增加:结论:对于未接受生物制剂治疗的患者而言,远程医疗具有成本效益。结论:对于未接受生物制剂治疗的患者而言,远程医疗具有成本效益,但对于参与 eCare 的患者而言,生物制剂治疗的费用更高。在 eCare 中仔细关注 PRO 可提高生活质量,并可延长复发时间。
{"title":"The Costs of Home Monitoring by Telemedicine vs Standard Care for Inflammatory Bowel Diseases-A Danish Register-Based, 5-Year Follow-up Study.","authors":"Marwah Al-Sheikh, Dorit Vedel Ankersen, Jens Olsen, Maria Spanggaard, Charlotte T Peters-Lehm, Rahim M Naimi, Mette Bennedsen, Johan Burisch, Pia Munkholm","doi":"10.1093/ecco-jcc/jjae120","DOIUrl":"10.1093/ecco-jcc/jjae120","url":null,"abstract":"<p><strong>Background and aims: </strong>There are few studies on the cost-effectiveness of telemedicine for inflammatory bowel diseases. We assessed the long-term cost-effectiveness of a telemedicine solution compared to standard care (sCare), as well as its efficacy according to patient-reported outcomes (PROs).</p><p><strong>Methods: </strong>Between 2015 and 2020, we conducted a retrospective, register-based study among patients with ulcerative colitis and Crohn's disease. Direct and indirect healthcare costs over a 5-year period were obtained from Danish registers and compared to a control group. Costs were estimated on a yearly basis from 1 year before, until 5 years after, inclusion in the trial. Patients were divided into 2 groups: those not receiving biologics (Cohort 1) and those receiving biologics (Cohort 2).</p><p><strong>Results: </strong>We recruited 574 patients with inflammatory bowel diseases. In Cohort 1 (61.5%), average total direct costs and total earnings per patient per year were €14 043 and €307 793, respectively, in telemedicine compared to €16 226 and €252 166, respectively, in sCare. In Cohort 2 (38.5%), average total direct costs and total earnings were €73 916 and €215 833, respectively, in telemedicine compared to €41 748 and €203 667, respectively, in sCare. PROs showed improved quality of life, which was higher in Cohort 1 than in Cohort 2. Disease activity among patients with Crohn's disease increased after Years 3 and 4 in Cohorts 1 and 2, respectively.</p><p><strong>Conclusion: </strong>Telemedicine is cost-effective for patients not receiving biologics. However, treatment with biologics is more expensive for patients enrolled in telemedicine. Careful attention to PROs in telemedicine improves quality of life and could prolong the time to relapse.</p>","PeriodicalId":94074,"journal":{"name":"Journal of Crohn's & colitis","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11836881/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141899250","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Achievement of Endoscopic Remission After Induction Reduces Hospitalization Burden in Crohn's Disease: Findings From a Pooled Post Hoc Analysis of Risankizumab and Upadacitinib Phase III Trials. 诱导后达到内镜缓解可减轻克罗恩病的住院负担:利桑珠单抗和乌帕他替尼III期试验的汇总后分析结果》(Pooled Post Hoc Analysis of Risankizumab and Upadacitinib Phase III Trials)。
Pub Date : 2025-02-04 DOI: 10.1093/ecco-jcc/jjae128
Remo Panaccione, Christopher Ma, Vipul Jairath, Axel Dignass, Namita Joshi, Ryan Clark, Jenny Griffith, Kristina Kligys, Monika Semwal, Zachary Smith, Dominic Mitchell, Dominic Nunag, Marc Ferrante

Background: Endoscopic remission has emerged as an important treatment target in Crohn's disease (CD) and has been associated with improvement in long-term outcomes. We examined the relationship between achievement of endoscopic remission and hospitalizations using pooled data from 52-week Phase III maintenance trials of risankizumab and upadacitinib in patients with moderate-to-severe active CD.

Methods: Included patients received maintenance therapy after achieving a clinical response following a 12-week induction with risankizumab or upadacitinib. Endoscopic remission was defined as a Simple Endoscopic Score for Crohn's Disease (SES-CD) of no greater than 4, with at least a 2-point reduction vs induction baseline and no subscore greater than 1. All subsequent hospitalization events were recorded until completion of the maintenance trial or discontinuation. Exposure-adjusted negative binomial regression models were estimated to assess the relationship between post-induction endoscopic remission and long-term hospitalization, controlling for demographics, clinical variables, and treatment arm.

Results: Post-induction hospitalization rates were lower in patients who achieved endoscopic remission at the end of the induction period. In multivariable models, post-induction endoscopic remission was independently associated with incidence rate ratios of 0.45 (95% confidence interval [CI], 0.22-0.95, p = 0.036) and 0.71 (95% CI, 0.44-1.14, p = 0.156) for long-term disease-related and all-cause hospitalizations, respectively.

Conclusions: Week 12 endoscopic remission is independently associated with a reduction in 52-week disease-related hospitalizations. However, achieving this stringent endpoint within 12 weeks of therapy may be challenging. Endoscopic response may be a more realistic early endoscopic target in the post-induction timeframe. Additional research is needed to evaluate early achievement of alternative endoscopic endpoints in CD.

背景:内镜缓解已成为克罗恩病(CD)的一个重要治疗目标,并与长期预后的改善有关。我们对中度至重度活动性克罗恩病患者进行了为期 52 周的利桑珠单抗和乌达替尼维持治疗 III 期试验,研究了内镜缓解与住院治疗之间的关系:纳入的患者在使用利桑珠单抗或高达替尼进行为期 12 周的诱导治疗并获得临床应答后接受维持治疗。内镜下缓解的定义是:CD简单内镜评分不超过4分,与诱导基线相比至少降低2分,且没有子评分超过1分。在控制人口统计学、临床变量和治疗组的情况下,对暴露调整负二项回归模型进行了估计,以评估诱导后内镜缓解与长期住院之间的关系:结果:在诱导期结束时获得内镜缓解的患者诱导后住院率较低。在多变量模型中,诱导后内镜缓解与长期疾病相关住院和全因住院的IRR分别为0.45(95% CI [0.22-0.95],p=0.036)和0.71(95% CI [0.44-1.14],p=0.156):结论:第12周内镜治疗缓解与减少52周疾病相关住院率密切相关。结论:第12周内镜下缓解与减少52周疾病相关住院率密切相关。然而,在治疗12周内达到这一严格终点可能具有挑战性。内镜反应可能是诱导后更现实的早期内镜目标。还需要进行更多的研究来评估 CD 早期实现其他内镜终点的情况。
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引用次数: 0
Prevalence, incidence, and mortality of inflammatory bowel disease in the Netherlands: development and external validation of machine learning models.
Pub Date : 2025-02-04 DOI: 10.1093/ecco-jcc/jjaf017
Reinier C A van Linschoten, Nikki van Leeuwen, David van Klaveren, Marieke J Pierik, Rob Creemers, Evelien M B Hendrix, Jan A Hazelzet, C Janneke van der Woude, Rachel L West, Desirée van Noord

Background and aims: Large registries are promising tools to study the epidemiology of inflammatory bowel disease (IBD). We aimed to develop and validate machine learning models to identify IBD cases in administrative data, aiming to determine the prevalence, incidence, and mortality of IBD in the Netherlands.

Methods: We developed machine learning models for administrative data to identify IBD cases and classify them on subtype and incidence year. Models were developed in a population-based cohort and externally validated in a hospital cohort. Models were evaluated on Brier score, area under the receiver operating characteristic curve (AUC), calibration, and accuracy. The best models were used to determine the epidemiology of IBD in the Netherlands between 2013 and 2020.

Results: For identifying IBD cases the random forest model was best (AUC: 0.97, 95% CI [0.96; 0.97]). The gradient-boosted trees model for subtype was best (accuracy: 0.95, 95% CI [0.94; 0.95]) as was the random forest model for incidence year (0.88, 95% CI [0.86; 0.89]). The prevalence of IBD in the Netherlands was 577.6 (95% CI [566.7; 586.2]) per 100 000 on December 31, 2020, with varying prevalence across the Netherlands. Incidence of IBD was 20.1 (95% CI [18.0; 22.3]) per 100 000 in 2020 and stable over time. Mortality rates of IBD patients rose over time and were 11.6 (95% CI [10.5; 11.8]) per 1000 in 2020 as compared to 9.5 in the general population.

Conclusion: Inflammatory bowel disease cases can be accurately identified using administrative data. The prevalence of IBD in the Netherlands is increasing slower than expected, suggesting a trend towards the epidemiological stage of Prevalence Equilibrium.

{"title":"Prevalence, incidence, and mortality of inflammatory bowel disease in the Netherlands: development and external validation of machine learning models.","authors":"Reinier C A van Linschoten, Nikki van Leeuwen, David van Klaveren, Marieke J Pierik, Rob Creemers, Evelien M B Hendrix, Jan A Hazelzet, C Janneke van der Woude, Rachel L West, Desirée van Noord","doi":"10.1093/ecco-jcc/jjaf017","DOIUrl":"10.1093/ecco-jcc/jjaf017","url":null,"abstract":"<p><strong>Background and aims: </strong>Large registries are promising tools to study the epidemiology of inflammatory bowel disease (IBD). We aimed to develop and validate machine learning models to identify IBD cases in administrative data, aiming to determine the prevalence, incidence, and mortality of IBD in the Netherlands.</p><p><strong>Methods: </strong>We developed machine learning models for administrative data to identify IBD cases and classify them on subtype and incidence year. Models were developed in a population-based cohort and externally validated in a hospital cohort. Models were evaluated on Brier score, area under the receiver operating characteristic curve (AUC), calibration, and accuracy. The best models were used to determine the epidemiology of IBD in the Netherlands between 2013 and 2020.</p><p><strong>Results: </strong>For identifying IBD cases the random forest model was best (AUC: 0.97, 95% CI [0.96; 0.97]). The gradient-boosted trees model for subtype was best (accuracy: 0.95, 95% CI [0.94; 0.95]) as was the random forest model for incidence year (0.88, 95% CI [0.86; 0.89]). The prevalence of IBD in the Netherlands was 577.6 (95% CI [566.7; 586.2]) per 100 000 on December 31, 2020, with varying prevalence across the Netherlands. Incidence of IBD was 20.1 (95% CI [18.0; 22.3]) per 100 000 in 2020 and stable over time. Mortality rates of IBD patients rose over time and were 11.6 (95% CI [10.5; 11.8]) per 1000 in 2020 as compared to 9.5 in the general population.</p><p><strong>Conclusion: </strong>Inflammatory bowel disease cases can be accurately identified using administrative data. The prevalence of IBD in the Netherlands is increasing slower than expected, suggesting a trend towards the epidemiological stage of Prevalence Equilibrium.</p>","PeriodicalId":94074,"journal":{"name":"Journal of Crohn's & colitis","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11879025/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143412080","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Novel Microbial Engraftment Trajectories Following Microbiota Transplant Therapy in Ulcerative Colitis. 溃疡性结肠炎微生物群移植疗法后的新型微生物移植轨迹
Pub Date : 2025-02-04 DOI: 10.1093/ecco-jcc/jjae142
Daphne Moutsoglou, Aneesh Syal, Sharon Lopez, Elizabeth C Nelson, Lulu Chen, Amanda J Kabage, Monika Fischer, Alexander Khoruts, Byron P Vaughn, Christopher Staley

Background and aims: Microbiota transplant therapy (MTT) is an emerging treatment for ulcerative colitis (UC). One proposed mechanism for the benefit of MTT is through engraftment of donor microbiota; however, engraftment kinetics are unknown. We identified SourceTracker as an efficient method both to determine engraftment and for the kinetic study of engrafting donor taxa to aid in determining the mechanism of how this therapy may treat UC.

Methods: Ulcerative colitis patients received either encapsulated (drug name MTP-101C) or placebo capsules daily for 8 weeks followed by a 4-week washout period. Amplicon sequence data from donors and patients were analyzed using the Bayesian algorithm SourceTracker.

Results: Twenty-seven patients were enrolled, 14 to placebo and 13 to MTT. Baseline Shannon and Chao1 indices negatively correlated with week 12 donor engraftment for patients treated with active drug capsules but not for placebo patients. SourceTracker engraftment positively correlated with the week 12 distance from donors measured using the Bray-Curtis similarity metric in treated patients but not with placebo. Engraftment at week 12 was significantly higher in the MTT group than in the placebo group. We identified engrafting taxa from donors in our patients and quantified the proportion of donor similarity or engraftment during weeks 1 through 8 (active treatment) and week 12, 4 weeks after the last dose.

Conclusion: SourceTracker can be used as a simple and reliable method to quantify donor microbial community engraftment and donor taxa contribution in patients with UC and other inflammatory conditions treated with MTT.

背景和目的:微生物群移植疗法是治疗溃疡性结肠炎的一种新兴疗法。微生物群移植疗法获益的一个拟议机制是通过供体微生物群的移植。然而,移植的动力学尚不清楚。我们发现,SourceTracker 是一种有效的方法,既能确定移植情况,又能对移植供体分类群进行动力学研究,从而帮助确定这种疗法治疗溃疡性结肠炎的机制:溃疡性结肠炎患者每天服用胶囊剂(药名 MTP-101C)或安慰剂,疗程为八周,然后是四周的冲洗期。使用贝叶斯算法 SourceTracker 分析供体和患者的扩增子序列数据:27 名患者入组,其中安慰剂组 14 人,微生物群移植疗法组 13 人。接受活性药物胶囊治疗的患者的基线香农指数和Chao1指数与第12周的供体移植物率呈负相关,而安慰剂患者则不相关。在接受治疗的患者中,SourceTracker 移植率与使用 Bray-Curtis 相似度指标测量的第 12 周与供体的距离呈正相关,而安慰剂患者则不然。我们确定了患者体内供体的移植分类群,并量化了第 1 到 8 周(积极治疗)和第 12 周(最后一次用药后 4 周)期间供体相似度或移植的比例:SourceTracker可作为一种简单可靠的方法,用于量化接受微生物群移植治疗的溃疡性结肠炎和其他炎症患者的供体微生物群落移植情况和供体分类群贡献。
{"title":"Novel Microbial Engraftment Trajectories Following Microbiota Transplant Therapy in Ulcerative Colitis.","authors":"Daphne Moutsoglou, Aneesh Syal, Sharon Lopez, Elizabeth C Nelson, Lulu Chen, Amanda J Kabage, Monika Fischer, Alexander Khoruts, Byron P Vaughn, Christopher Staley","doi":"10.1093/ecco-jcc/jjae142","DOIUrl":"10.1093/ecco-jcc/jjae142","url":null,"abstract":"<p><strong>Background and aims: </strong>Microbiota transplant therapy (MTT) is an emerging treatment for ulcerative colitis (UC). One proposed mechanism for the benefit of MTT is through engraftment of donor microbiota; however, engraftment kinetics are unknown. We identified SourceTracker as an efficient method both to determine engraftment and for the kinetic study of engrafting donor taxa to aid in determining the mechanism of how this therapy may treat UC.</p><p><strong>Methods: </strong>Ulcerative colitis patients received either encapsulated (drug name MTP-101C) or placebo capsules daily for 8 weeks followed by a 4-week washout period. Amplicon sequence data from donors and patients were analyzed using the Bayesian algorithm SourceTracker.</p><p><strong>Results: </strong>Twenty-seven patients were enrolled, 14 to placebo and 13 to MTT. Baseline Shannon and Chao1 indices negatively correlated with week 12 donor engraftment for patients treated with active drug capsules but not for placebo patients. SourceTracker engraftment positively correlated with the week 12 distance from donors measured using the Bray-Curtis similarity metric in treated patients but not with placebo. Engraftment at week 12 was significantly higher in the MTT group than in the placebo group. We identified engrafting taxa from donors in our patients and quantified the proportion of donor similarity or engraftment during weeks 1 through 8 (active treatment) and week 12, 4 weeks after the last dose.</p><p><strong>Conclusion: </strong>SourceTracker can be used as a simple and reliable method to quantify donor microbial community engraftment and donor taxa contribution in patients with UC and other inflammatory conditions treated with MTT.</p>","PeriodicalId":94074,"journal":{"name":"Journal of Crohn's & colitis","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142142194","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Adverse maternal outcomes after vaginal versus caesarean delivery in women with Crohn's disease and prior perianal surgery: a population-based study.
Pub Date : 2025-02-04 DOI: 10.1093/ecco-jcc/jjaf028
Xiaocen Zhang, Bente Mertz Nørgård, Olav Sivertsen Garvik, Jan Nielsen, Mette Louise Andersen, Sonia Friedman

Background and aims: For pregnant women with perianal Crohn's disease (CD), major guidelines recommend delivery by caesarean section (c-section) for active disease, and that delivery mode be governed by obstetric indications for women with inactive disease. However, a significant gray zone exists between active versus inactive disease, such as for women who had a history of prior perianal surgery. We examined adverse maternal outcomes of vaginal delivery versus c-section in women with perianal CD and prior perianal surgeries.

Methods: We used the Danish national registries to collect information on singleton live births from 1997 through 2022 by mothers with CD and previous perianal surgery. Adverse postpartum maternal outcomes included new perianal or intestinal surgery within 12 months, hospital diagnosed infection or outpatient antibiotic prescription within 6 months, and major haemorrhage within 3 days. Adjusted odds ratios (aOR) were estimated in logistic regression models.

Results: There were 704 deliveries by women with CD and prior perianal surgery, including 245 vaginal deliveries (34.8%) and 459 c-sections (65.2%). Women who delivered vaginally versus by c-section had less new perianal surgery (aOR 0.47, 95% CI, 0.24-0.93) and no significant differences in intestinal CD surgery (aOR 0.87, 95% CI, 0.43-1.75), hospital diagnosed infection (aOR 0.50, 95% CI, 0.18-1.38), outpatient antibiotic prescription (aOR 0.92, 95% CI, 0.65-1.28), or major hemorrhage (aOR 0.79, 95% CI, 0.39-1.59).

Conclusions: Vaginal delivery was not associated with increased important adverse maternal outcomes in mothers with CD and prior perianal surgery.

{"title":"Adverse maternal outcomes after vaginal versus caesarean delivery in women with Crohn's disease and prior perianal surgery: a population-based study.","authors":"Xiaocen Zhang, Bente Mertz Nørgård, Olav Sivertsen Garvik, Jan Nielsen, Mette Louise Andersen, Sonia Friedman","doi":"10.1093/ecco-jcc/jjaf028","DOIUrl":"10.1093/ecco-jcc/jjaf028","url":null,"abstract":"<p><strong>Background and aims: </strong>For pregnant women with perianal Crohn's disease (CD), major guidelines recommend delivery by caesarean section (c-section) for active disease, and that delivery mode be governed by obstetric indications for women with inactive disease. However, a significant gray zone exists between active versus inactive disease, such as for women who had a history of prior perianal surgery. We examined adverse maternal outcomes of vaginal delivery versus c-section in women with perianal CD and prior perianal surgeries.</p><p><strong>Methods: </strong>We used the Danish national registries to collect information on singleton live births from 1997 through 2022 by mothers with CD and previous perianal surgery. Adverse postpartum maternal outcomes included new perianal or intestinal surgery within 12 months, hospital diagnosed infection or outpatient antibiotic prescription within 6 months, and major haemorrhage within 3 days. Adjusted odds ratios (aOR) were estimated in logistic regression models.</p><p><strong>Results: </strong>There were 704 deliveries by women with CD and prior perianal surgery, including 245 vaginal deliveries (34.8%) and 459 c-sections (65.2%). Women who delivered vaginally versus by c-section had less new perianal surgery (aOR 0.47, 95% CI, 0.24-0.93) and no significant differences in intestinal CD surgery (aOR 0.87, 95% CI, 0.43-1.75), hospital diagnosed infection (aOR 0.50, 95% CI, 0.18-1.38), outpatient antibiotic prescription (aOR 0.92, 95% CI, 0.65-1.28), or major hemorrhage (aOR 0.79, 95% CI, 0.39-1.59).</p><p><strong>Conclusions: </strong>Vaginal delivery was not associated with increased important adverse maternal outcomes in mothers with CD and prior perianal surgery.</p>","PeriodicalId":94074,"journal":{"name":"Journal of Crohn's & colitis","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143412079","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Journal of Crohn's & colitis
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