Pub Date : 2025-12-01DOI: 10.1016/j.jid.2025.11.013
Madeline N Williams, Daniel Joffe, Jenna Mandel, Samuel Schepps, Molly Wallace, Carla Portocarrero, Oliver Abinader, Ramkrishna Mitra, Anjali Mishra, Neda Nikbakht
The most common subtype of cutaneous T-cell lymphoma, mycosis fungoides (MF), is characterized by proliferation of malignant T cells in the skin. In the more clinically aggressive folliculotropic MF (FMF), malignant T cells localize to follicular epithelium, whereas in classic MF, they infiltrate the dermis and epidermis. How the localization of neoplastic T cells to the follicular niche contributes to the clinical aggression in FMF is unclear. To uncover the tumor microenvironmental differences between perifollicular FMF and dermal classic MF regions, we analyzed patient samples using spatial transcriptomics. Transcripts were collected from specific cell subsets within follicular (FMF) and dermal (classic MF) regions of interest to compare gene expression, spatial deconvolution, and pathway activity. Our work revealed that the neoplastic CD4 T cells around the hair follicles in FMF had a highly inflammatory phenotype, better adaptation to cellular starvation, higher metabolic activity, and enhanced antigen presentation. In contrast, cutaneous T-cell lymphoma-associated macrophages in FMF exhibited an immunosuppressive phenotype with decreased IL-2 and IFN signaling. These findings suggest that the follicular microenvironment may provide survival advantages to malignant T cells while promoting a dysregulated antitumor immune response. These observations provide insight into the mechanisms underlying the more aggressive clinical features of FMF versus classic MF.
{"title":"Spatial transcriptomics uncovers unique tumor microenvironments in folliculotropic versus classic mycosis fungoides.","authors":"Madeline N Williams, Daniel Joffe, Jenna Mandel, Samuel Schepps, Molly Wallace, Carla Portocarrero, Oliver Abinader, Ramkrishna Mitra, Anjali Mishra, Neda Nikbakht","doi":"10.1016/j.jid.2025.11.013","DOIUrl":"10.1016/j.jid.2025.11.013","url":null,"abstract":"<p><p>The most common subtype of cutaneous T-cell lymphoma, mycosis fungoides (MF), is characterized by proliferation of malignant T cells in the skin. In the more clinically aggressive folliculotropic MF (FMF), malignant T cells localize to follicular epithelium, whereas in classic MF, they infiltrate the dermis and epidermis. How the localization of neoplastic T cells to the follicular niche contributes to the clinical aggression in FMF is unclear. To uncover the tumor microenvironmental differences between perifollicular FMF and dermal classic MF regions, we analyzed patient samples using spatial transcriptomics. Transcripts were collected from specific cell subsets within follicular (FMF) and dermal (classic MF) regions of interest to compare gene expression, spatial deconvolution, and pathway activity. Our work revealed that the neoplastic CD4 T cells around the hair follicles in FMF had a highly inflammatory phenotype, better adaptation to cellular starvation, higher metabolic activity, and enhanced antigen presentation. In contrast, cutaneous T-cell lymphoma-associated macrophages in FMF exhibited an immunosuppressive phenotype with decreased IL-2 and IFN signaling. These findings suggest that the follicular microenvironment may provide survival advantages to malignant T cells while promoting a dysregulated antitumor immune response. These observations provide insight into the mechanisms underlying the more aggressive clinical features of FMF versus classic MF.</p>","PeriodicalId":94239,"journal":{"name":"The Journal of investigative dermatology","volume":" ","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145673348","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nagashima-type palmoplantar keratosis (also referred to as SERPINB7-related palmoplantar epidermal differentiation disorder) is the most common form of palmoplantar keratoderma in East Asia. It is characterized by erythematous hyperkeratosis, palmoplantar hyperhidrosis, and a distinctive foot odor that significantly impairs QOL. In this study, we aimed to clarify the etiology of this odor by investigating the plantar microbiome and evaluating the therapeutic effects of topical benzoyl peroxide. Compared with healthy controls, individuals with Nagashima-type palmoplantar keratosis exhibited significantly higher objective odor scores; increased bacterial load, especially in the intertoe area; and reduced microbial diversity. Corynebacterium and Staphylococcus were the predominant dysbiotic flora species. The topical application of benzoyl peroxide significantly reduced foot odor and bacterial load; increased microbial diversity; and selectively decreased Corynebacterium abundance, particularly that of C tuberculostearicum. These changes correlate with the species-specific susceptibility of skin-resident bacteria to benzoyl peroxide. Our findings suggest that microbial dysbiosis, especially the overgrowth of Corynebacterium species, is central to the pathogenesis of foot odor in Nagashima-type palmoplantar keratosis. Topical benzoyl peroxide is a promising therapeutic intervention for mitigating dysbiosis and its associated foot odor. This study highlights the potential of microbiome-targeted therapies for symptom relief in inherited skin disorders such as Nagashima-type palmoplantar keratosis.
{"title":"Microbial dysbiosis and foot odor in Nagashima-type palmoplantar keratosis: Improvement with topical benzoyl peroxide.","authors":"Noriko Ono, Yoshihiro Ito, Satomi Aoki, Aiko Shiohama, Takashi Sasaki, Rina Kurokawa, Wataru Suda, Masayuki Amagai, Akiharu Kubo","doi":"10.1016/j.jid.2025.11.011","DOIUrl":"10.1016/j.jid.2025.11.011","url":null,"abstract":"<p><p>Nagashima-type palmoplantar keratosis (also referred to as SERPINB7-related palmoplantar epidermal differentiation disorder) is the most common form of palmoplantar keratoderma in East Asia. It is characterized by erythematous hyperkeratosis, palmoplantar hyperhidrosis, and a distinctive foot odor that significantly impairs QOL. In this study, we aimed to clarify the etiology of this odor by investigating the plantar microbiome and evaluating the therapeutic effects of topical benzoyl peroxide. Compared with healthy controls, individuals with Nagashima-type palmoplantar keratosis exhibited significantly higher objective odor scores; increased bacterial load, especially in the intertoe area; and reduced microbial diversity. Corynebacterium and Staphylococcus were the predominant dysbiotic flora species. The topical application of benzoyl peroxide significantly reduced foot odor and bacterial load; increased microbial diversity; and selectively decreased Corynebacterium abundance, particularly that of C tuberculostearicum. These changes correlate with the species-specific susceptibility of skin-resident bacteria to benzoyl peroxide. Our findings suggest that microbial dysbiosis, especially the overgrowth of Corynebacterium species, is central to the pathogenesis of foot odor in Nagashima-type palmoplantar keratosis. Topical benzoyl peroxide is a promising therapeutic intervention for mitigating dysbiosis and its associated foot odor. This study highlights the potential of microbiome-targeted therapies for symptom relief in inherited skin disorders such as Nagashima-type palmoplantar keratosis.</p>","PeriodicalId":94239,"journal":{"name":"The Journal of investigative dermatology","volume":" ","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145673278","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-29DOI: 10.1016/j.jid.2025.10.620
Lu Zhang, Lerong Lun, Maoqia Shen, Wanying Zhai, Jui-Wen Chang, Wenjing Jiang, Xiru Tang, Wenhui Liu, Yali Gao, Huilin Su, Jiande Han, Fengxian Li, Fang Wang
Chronic pruritus of unknown origin is a debilitating condition characterized by persistent itch without an identifiable cause, yet its underlying mechanisms remain elusive. Using single-cell RNA sequencing, we identified systemic immune dysregulation in patients with chronic pruritus of unknown origin, characterized by upregulated CCL3 expression in monocytes and NK cells. Plasma CCL3 levels effectively distinguished patients with chronic pruritus of unknown origin from healthy controls and strongly correlated with itch severity. Although CCL3 did not function as a direct pruritogen in mice, it enhanced sensory neuron sensitivity through CCR1, thereby amplifying scratching responses to diverse pruritogens. Furthermore, cutaneous CCL3 was markedly upregulated in a chronic dry-skin itch model. Inhibition of CCR1 or neutralization of CCL3 significantly suppressed scratching behavior in this model. Together, these findings identify CCL3 as a potential diagnostic biomarker for chronic pruritus of unknown origin and highlight the CCL3-CCR1 axis as a critical neuroimmune pathway underlying chronic itch. This CCL3-CCR1 signaling pathway may represent a promising therapeutic target for refractory pruritic disorders.
{"title":"Multiomics reveals CCL3-driving neuronal sensitization in chronic pruritus of unknown origin.","authors":"Lu Zhang, Lerong Lun, Maoqia Shen, Wanying Zhai, Jui-Wen Chang, Wenjing Jiang, Xiru Tang, Wenhui Liu, Yali Gao, Huilin Su, Jiande Han, Fengxian Li, Fang Wang","doi":"10.1016/j.jid.2025.10.620","DOIUrl":"10.1016/j.jid.2025.10.620","url":null,"abstract":"<p><p>Chronic pruritus of unknown origin is a debilitating condition characterized by persistent itch without an identifiable cause, yet its underlying mechanisms remain elusive. Using single-cell RNA sequencing, we identified systemic immune dysregulation in patients with chronic pruritus of unknown origin, characterized by upregulated CCL3 expression in monocytes and NK cells. Plasma CCL3 levels effectively distinguished patients with chronic pruritus of unknown origin from healthy controls and strongly correlated with itch severity. Although CCL3 did not function as a direct pruritogen in mice, it enhanced sensory neuron sensitivity through CCR1, thereby amplifying scratching responses to diverse pruritogens. Furthermore, cutaneous CCL3 was markedly upregulated in a chronic dry-skin itch model. Inhibition of CCR1 or neutralization of CCL3 significantly suppressed scratching behavior in this model. Together, these findings identify CCL3 as a potential diagnostic biomarker for chronic pruritus of unknown origin and highlight the CCL3-CCR1 axis as a critical neuroimmune pathway underlying chronic itch. This CCL3-CCR1 signaling pathway may represent a promising therapeutic target for refractory pruritic disorders.</p>","PeriodicalId":94239,"journal":{"name":"The Journal of investigative dermatology","volume":" ","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145650671","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-27DOI: 10.1016/j.jid.2025.10.617
Paola Oliveira Lopes, Carlos Henrique Fantecelle, Bruna Amorim Barboza, Celio Geraldo Freire-de-Lima, Debora Decote-Ricardo, Herbert Leonel de Matos Guedes, Alessandra M da Fonseca-Martins, Lucas Pedreira Carvalho, Viviane S Boaventura, David M Mosser, Aloisio Falqueto, Marcelo Lemos de Almeida, Mark Coles, Arne N Akbar, Valéria M Borges, Luciana Polaco Covre, Daniel Claudio Oliveira Gomes
{"title":"Spatial profiling of human diffuse cutaneous leishmaniasis lesions reveals immunosuppressive microenvironments that coincide with parasite localization.","authors":"Paola Oliveira Lopes, Carlos Henrique Fantecelle, Bruna Amorim Barboza, Celio Geraldo Freire-de-Lima, Debora Decote-Ricardo, Herbert Leonel de Matos Guedes, Alessandra M da Fonseca-Martins, Lucas Pedreira Carvalho, Viviane S Boaventura, David M Mosser, Aloisio Falqueto, Marcelo Lemos de Almeida, Mark Coles, Arne N Akbar, Valéria M Borges, Luciana Polaco Covre, Daniel Claudio Oliveira Gomes","doi":"10.1016/j.jid.2025.10.617","DOIUrl":"10.1016/j.jid.2025.10.617","url":null,"abstract":"","PeriodicalId":94239,"journal":{"name":"The Journal of investigative dermatology","volume":" ","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145644327","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-26DOI: 10.1016/j.jid.2025.11.007
Jackelyn R Raymundo, Jasson Makkar, Michael G Fasci, Ryan R Driskell, Alexander G Marneros
The contributions of specific growth factors (GFs) to hair follicle maintenance during aging remain poorly understood. The GF TGFα affects postnatal hair morphogenesis, and its loss leads to wavy hairs in young mice. Whether TGFα is required for proper hair follicle function during aging has not been explored. In this study, we find that loss of TGFα results in severe progressive alopecia, leading to an almost complete absence of back hairs in aged mice. Deep hair phenomics shows that the progressive hair loss is associated with a switch of hair-type proportions toward zigzag hairs, increased hair waviness, decreased hair length, and increased trichoptilosis with multiple hair breakage points. Hair loss is associated with a progressive dilatation of the upper hair follicle, which showed keratinocyte differentiation abnormalities. Metabolomic analyses of epidermal sheets identified diminished levels of prostaglandin H2 in Tgfa-/- mice. Transcriptomic analyses linked the hair loss in aged Tgfa-/- mice to upregulation of genes involved in retinyl ester synthesis in keratinocytes, which resulted in increased retinyl stearate in skin of aged Tgfa-/- mice. Collectively, these findings identify TGFα as a critical regulator of hair follicles during aging, whose loss leads to progressive alopecia, associated with dysregulation of prostaglandin and retinoid metabolism.
{"title":"TGFα is required for hair follicle function during aging and its loss leads to progressive alopecia.","authors":"Jackelyn R Raymundo, Jasson Makkar, Michael G Fasci, Ryan R Driskell, Alexander G Marneros","doi":"10.1016/j.jid.2025.11.007","DOIUrl":"10.1016/j.jid.2025.11.007","url":null,"abstract":"<p><p>The contributions of specific growth factors (GFs) to hair follicle maintenance during aging remain poorly understood. The GF TGFα affects postnatal hair morphogenesis, and its loss leads to wavy hairs in young mice. Whether TGFα is required for proper hair follicle function during aging has not been explored. In this study, we find that loss of TGFα results in severe progressive alopecia, leading to an almost complete absence of back hairs in aged mice. Deep hair phenomics shows that the progressive hair loss is associated with a switch of hair-type proportions toward zigzag hairs, increased hair waviness, decreased hair length, and increased trichoptilosis with multiple hair breakage points. Hair loss is associated with a progressive dilatation of the upper hair follicle, which showed keratinocyte differentiation abnormalities. Metabolomic analyses of epidermal sheets identified diminished levels of prostaglandin H2 in Tgfa<sup>-/-</sup> mice. Transcriptomic analyses linked the hair loss in aged Tgfa<sup>-/-</sup> mice to upregulation of genes involved in retinyl ester synthesis in keratinocytes, which resulted in increased retinyl stearate in skin of aged Tgfa<sup>-/-</sup> mice. Collectively, these findings identify TGFα as a critical regulator of hair follicles during aging, whose loss leads to progressive alopecia, associated with dysregulation of prostaglandin and retinoid metabolism.</p>","PeriodicalId":94239,"journal":{"name":"The Journal of investigative dermatology","volume":" ","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12741946/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145644316","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-26DOI: 10.1016/j.jid.2025.11.008
Evangeline Breeta Raja David Isac, Sara Sigurbjörnsdóttir, Ramile Dilshat, Robert A Cornell, Colin Kenny, Eiríkur Steingrímsson
Melanoma cells evade drug treatment by changing their phenotype from proliferative to migrative cells and vice versa in a process known as phenotype switching. The Microphthalmia-associated transcription factor (MITF) is a key regulator of phenotype switching in melanoma. Previous studies have shown that loss of MITF affects the expression of epithelial-to-mesenchymal transition marker genes such as E-cadherin (CDH1) and N-cadherin (CDH2). However, the specific roles of CDH1 and CDH2 in phenotype switching as well as their direct correlation with MITF remain unclear. This study aimed to investigate how MITF regulates CDH1 expression in melanoma. The results showed that a 1 kb intronic CDH1 fragment (CDH1-B) leads to MITF-dependent activation of CDH1 expression through specific binding sites. Although MITF represses the expression of the epithelial-to-mesenchymal transition transcription factors SNAIL, ZEB1, and TWIST1, knockdown of SNAI1 and TWIST1 did not affect CDH1 expression or expression from the CDH1-B element. In addition, ZEB1 did not affect expression from the CDH1-B element, suggesting that MITF activates CDH1 directly through this regulatory element. Our results show the direct role of MITF in regulating CDH1 expression in melanoma, highlighting an important step in the phenotype switching process.
{"title":"Phenotype switching in melanoma cells: MITF regulates the expression of CDH1 through E-boxes in an intronic region.","authors":"Evangeline Breeta Raja David Isac, Sara Sigurbjörnsdóttir, Ramile Dilshat, Robert A Cornell, Colin Kenny, Eiríkur Steingrímsson","doi":"10.1016/j.jid.2025.11.008","DOIUrl":"10.1016/j.jid.2025.11.008","url":null,"abstract":"<p><p>Melanoma cells evade drug treatment by changing their phenotype from proliferative to migrative cells and vice versa in a process known as phenotype switching. The Microphthalmia-associated transcription factor (MITF) is a key regulator of phenotype switching in melanoma. Previous studies have shown that loss of MITF affects the expression of epithelial-to-mesenchymal transition marker genes such as E-cadherin (CDH1) and N-cadherin (CDH2). However, the specific roles of CDH1 and CDH2 in phenotype switching as well as their direct correlation with MITF remain unclear. This study aimed to investigate how MITF regulates CDH1 expression in melanoma. The results showed that a 1 kb intronic CDH1 fragment (CDH1-B) leads to MITF-dependent activation of CDH1 expression through specific binding sites. Although MITF represses the expression of the epithelial-to-mesenchymal transition transcription factors SNAIL, ZEB1, and TWIST1, knockdown of SNAI1 and TWIST1 did not affect CDH1 expression or expression from the CDH1-B element. In addition, ZEB1 did not affect expression from the CDH1-B element, suggesting that MITF activates CDH1 directly through this regulatory element. Our results show the direct role of MITF in regulating CDH1 expression in melanoma, highlighting an important step in the phenotype switching process.</p>","PeriodicalId":94239,"journal":{"name":"The Journal of investigative dermatology","volume":" ","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145644291","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-25DOI: 10.1016/j.jid.2025.10.616
Afua Ofori-Darko, Devin Barzallo, Sinead M Sinnott, Haley B Naik, Tina Hernandez-Boussard, Hermioni L Amonoo, Leandra A Barnes
{"title":"Biologic therapy and risk of mental health diagnosis in patients with hidradenitis suppurativa.","authors":"Afua Ofori-Darko, Devin Barzallo, Sinead M Sinnott, Haley B Naik, Tina Hernandez-Boussard, Hermioni L Amonoo, Leandra A Barnes","doi":"10.1016/j.jid.2025.10.616","DOIUrl":"10.1016/j.jid.2025.10.616","url":null,"abstract":"","PeriodicalId":94239,"journal":{"name":"The Journal of investigative dermatology","volume":" ","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-11-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12885631/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145644300","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-21DOI: 10.1016/j.jid.2025.10.540
Amy van Ee, Luis A Garza
{"title":"New Insights into the Neglected Disease Vulvar Lichen Sclerosus.","authors":"Amy van Ee, Luis A Garza","doi":"10.1016/j.jid.2025.10.540","DOIUrl":"10.1016/j.jid.2025.10.540","url":null,"abstract":"","PeriodicalId":94239,"journal":{"name":"The Journal of investigative dermatology","volume":" ","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12747584/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145582783","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-21DOI: 10.1016/j.jid.2025.11.006
Markus Fehrholz, Lisa Epping, Ilaria Piccini, Sabrina Altendorf, Ludovica Timperi, Xiaolin Li, Francisco Jimenez, Daniela Pinto, Janin Edelkamp, Ralf Paus, Marta Bertolini
Characterizing the transcriptome of defined human hair follicle (HF) compartments remains a fundamental hair research challenge. In this study, we have used laser-capture microdissection coupled with RNA sequencing to reveal gene expression profiles of 8 selected compartments of human anagen VI HFs. Principal component analysis identified a high degree of similarity in the distinct transcriptional profiles of each examined compartment as well as a sex-specific clustering. To validate our transcriptomic analysis, we demonstrated that well-known signature genes map to the correct HF compartment. Comparison with published microarray and single-cell RNA-sequencing data on human anagen VI HFs or selected cell populations showed that we were able to corroborate significant elements of their transcriptomic signatures, confirming the accuracy of our experimental pipeline. Furthermore, we identified, to our knowledge, previously unreported compartment-specific markers and confirmed the expression of selected ones, namely PAPPA2 for the dermal papilla, FOXM1 for the germinative hair matrix, APOD for the connective tissue sheath, and EHF for the bulge outer root sheath, by in situ hybridization. Finally, we conducted a CellChat analysis to uncover intercompartmental communication patterns and generated an-as yet unavailable-transcriptomic atlas of distinct human anagen VI HF compartments, which can be utilized to develop compartment-specific therapeutic interventions for the management of human HF disorders.
{"title":"Toward the generation of a laser-capture microdissection-based human hair follicle transcriptome atlas.","authors":"Markus Fehrholz, Lisa Epping, Ilaria Piccini, Sabrina Altendorf, Ludovica Timperi, Xiaolin Li, Francisco Jimenez, Daniela Pinto, Janin Edelkamp, Ralf Paus, Marta Bertolini","doi":"10.1016/j.jid.2025.11.006","DOIUrl":"10.1016/j.jid.2025.11.006","url":null,"abstract":"<p><p>Characterizing the transcriptome of defined human hair follicle (HF) compartments remains a fundamental hair research challenge. In this study, we have used laser-capture microdissection coupled with RNA sequencing to reveal gene expression profiles of 8 selected compartments of human anagen VI HFs. Principal component analysis identified a high degree of similarity in the distinct transcriptional profiles of each examined compartment as well as a sex-specific clustering. To validate our transcriptomic analysis, we demonstrated that well-known signature genes map to the correct HF compartment. Comparison with published microarray and single-cell RNA-sequencing data on human anagen VI HFs or selected cell populations showed that we were able to corroborate significant elements of their transcriptomic signatures, confirming the accuracy of our experimental pipeline. Furthermore, we identified, to our knowledge, previously unreported compartment-specific markers and confirmed the expression of selected ones, namely PAPPA2 for the dermal papilla, FOXM1 for the germinative hair matrix, APOD for the connective tissue sheath, and EHF for the bulge outer root sheath, by in situ hybridization. Finally, we conducted a CellChat analysis to uncover intercompartmental communication patterns and generated an-as yet unavailable-transcriptomic atlas of distinct human anagen VI HF compartments, which can be utilized to develop compartment-specific therapeutic interventions for the management of human HF disorders.</p>","PeriodicalId":94239,"journal":{"name":"The Journal of investigative dermatology","volume":" ","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145590591","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}