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Recombinant cellular model system for human muscle-type nicotinic acetylcholine receptor α12β1δε. 人肌肉型烟碱乙酰胆碱受体 α12β1δε 的重组细胞模型系统。
IF 3.8 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2023-11-01 DOI: 10.1007/s12192-023-01395-0
Sabrina Brockmöller, Thomas Seeger, Franz Worek, Simone Rothmiller

The human muscle-type nicotinic acetylcholine receptor α12β1δε (nAChR) is a complex transmembrane receptor needed for drug screening for disorders like congenital myasthenic syndromes and multiple pterygium syndrome. Until today, most models are still using the nAChR from Torpedo californica electric ray. A simple reproducible cellular system expressing functional human muscle-type nAChR is still missing. This study addressed this issue and further tested the hypothesis that different chaperones, both biological and chemical, and posttranslational modification supporting substances as well as hypothermic incubation are able to increase the nAChR yield. Therefore, Gibson cloning was used to generate transfer plasmids carrying the sequence of nAChR or chosen biological chaperones to support the nAChR folding in the cellular host. Viral transduction was used for stable integration of these transgenes in Chinese hamster ovary cells (CHO). Proteins were detected with Western blot, in-cell and on-cell Western, and the function of the receptor with voltage clamp analysis. We show that the internalization of nAChR into plasma membranes was sufficient for detection and function. Additional transgenic overexpression of biological chaperones did result in a reduced nAChR expression. Chemical chaperones, posttranslational modification supporting substances, and hypothermic conditions are well-suited supporting applications to increase the protein levels of different subunits. This study presents a stable and functional cell line that expresses human muscle-type nAChR and yields can be further increased using the chemical chaperone nicotine without affecting cell viability. The simplified access to this model system should enable numerous applications beyond drug development. GRAPHICAL ABSTRACT.

人类肌肉型烟碱乙酰胆碱受体α12β1δε(nAChR)是一种复杂的跨膜受体,需要用于先天性肌无力综合征和多发性翼状胬肉综合征等疾病的药物筛选。直到今天,大多数模型仍在使用来自加利福尼亚鱼雷的 nAChR。表达功能性人类肌肉型 nAChR 的简单可重现细胞系统仍然缺失。本研究解决了这一问题,并进一步检验了不同的生物和化学伴侣、翻译后修饰支持物质以及低温培养能够提高 nAChR 产量的假设。因此,利用吉布森克隆技术生成携带 nAChR 序列或所选生物伴侣的转运质粒,以支持 nAChR 在细胞宿主中折叠。病毒转导用于在中国仓鼠卵巢细胞(CHO)中稳定整合这些转基因。通过 Western 印迹、细胞内和细胞外 Western 检测蛋白质,并通过电压钳分析检测受体的功能。我们的研究表明,nAChR 内化到质膜中足以进行检测和发挥功能。生物伴侣素的额外转基因过表达确实导致了 nAChR 表达的减少。化学伴侣、翻译后修饰辅助物质和低温条件是提高不同亚基蛋白水平的理想辅助应用。本研究提出了一种表达人类肌肉型 nAChR 的稳定、功能性细胞系,使用化学伴侣物尼古丁可进一步提高产量,而不影响细胞活力。通过简化这一模型系统的获取途径,可在药物开发之外实现多种应用。图解摘要。
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引用次数: 0
Stem cells alleviate OGD/R mediated stress response in PC12 cells following a co-culture: modulation of the apoptotic cascade through BDNF-TrkB signaling. 干细胞通过共培养减轻 PC12 细胞中由 OGD/R 介导的应激反应:通过 BDNF-TrkB 信号调节凋亡级联。
IF 3.8 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2023-11-01 DOI: 10.1007/s12192-022-01319-4
Harpreet Kaur, Deepaneeta Sarmah, Aishika Datta, Anupom Borah, Dileep R Yavagal, Pallab Bhattacharya

Apoptosis mediated by endoplasmic reticulum (ER) stress plays a crucial role in several neurovascular disorders, including ischemia/reperfusion injury (I/R injury). Previous in vitro and in vivo studies have suggested that following I/R injury, ER stress is vital for mediating CCAT-enhancer-binding protein homologous protein (CHOP) and caspase-12-dependent apoptosis. However, its modulation in the presence of stem cells and the underlying mechanism of cytoprotection remains elusive. In vivo studies from our lab have reported that post-stroke endovascular administration of stem cells renders neuroprotection and regulates apoptosis mediated by ER stress. In the current study, a more robust in vitro validation has been undertaken to decipher the mechanism of stem cell-mediated cytoprotection. Results from our study have shown that oxygen-glucose deprivation/reoxygenation (OGD/R) potentiated ER stress and apoptosis in the pheochromocytoma 12 (PC12) cell line as evident by the increase of protein kinase R (PKR)-like ER kinase (p-PERK), p-Eukaryotic initiation factor 2α subunit (EIF2α), activation transcription factor 4 (ATF4), CHOP, and caspase 12 expressions. Following the co-culture of PC12 cells with MSCs, ER stress was significantly reduced, possibly via modulating the brain-derived neurotrophic factor (BDNF) signaling. Furthermore, inhibition of BDNF by inhibitor K252a abolished the protective effects of BDNF secreted by MSCs following OGD/R. Our study suggests that inhibition of ER stress-associated apoptotic pathway with MSCs co-culture following OGD/R may help to alleviate cellular injury and further substantiate the use of stem cells as a therapeutic modality toward neuroprotection following hypoxic injury or stroke in clinical settings.

内质网(ER)应激介导的细胞凋亡在包括缺血/再灌注损伤(I/R 损伤)在内的多种神经血管疾病中起着至关重要的作用。之前的体外和体内研究表明,I/R 损伤后,ER 应激对于介导 CCAT-增强子结合蛋白同源蛋白(CHOP)和 caspase-12 依赖性凋亡至关重要。然而,干细胞存在时对ER应激的调控以及细胞保护的基本机制仍未确定。我们实验室的体内研究报告称,中风后血管内注射干细胞可提供神经保护,并调节由ER应激介导的细胞凋亡。在目前的研究中,我们进行了更有力的体外验证,以破译干细胞介导的细胞保护机制。我们的研究结果表明,氧-葡萄糖剥夺/复氧(OGD/R)增强了嗜铬细胞瘤12(PC12)细胞系的ER应激和细胞凋亡,表现为蛋白激酶R(PKR)-类ER激酶(p-PERK)、p-核糖体启动因子2α亚基(EIF2α)、活化转录因子4(ATF4)、CHOP和caspase 12表达的增加。PC12细胞与间充质干细胞共培养后,ER应激明显降低,这可能是通过调节脑源性神经营养因子(BDNF)信号传导实现的。此外,用抑制剂K252a抑制BDNF可消除间充质干细胞分泌的BDNF对OGD/R的保护作用。我们的研究表明,在OGD/R后与间充质干细胞共培养,抑制ER应激相关的细胞凋亡通路可能有助于减轻细胞损伤,并进一步证实了干细胞在缺氧损伤或中风后的临床神经保护治疗中的应用。
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引用次数: 0
Unveiling a differential metabolite modulation of sorghum varieties under increasing tunicamycin-induced endoplasmic reticulum stress. 揭示了在膜霉素诱导的内质网应激增加下高粱品种的差异代谢产物调节。
IF 3.8 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2023-11-01 Epub Date: 2023-09-29 DOI: 10.1007/s12192-023-01382-5
Francisco Lucas Pacheco Cavalcante, Sávio Justino da Silva, Lineker de Sousa Lopes, Stelamaris de Oliveira Paula-Marinho, Maria Izabel Florindo Guedes, Enéas Gomes-Filho, Humberto Henrique de Carvalho

Plants trigger endoplasmic reticulum (ER) pathways to survive stresses, but the assistance of ER in plant tolerance still needs to be explored. Thus, we selected sensitive and tolerant contrasting abiotic stress sorghum varieties to test if they present a degree of tolerance to ER stress. Accordingly, this work evaluated crescent concentrations of tunicamycin (TM µg mL-1): control (0), lower (0.5), mild (1.5), and higher (2.5) on the initial establishment of sorghum seedlings CSF18 and CSF20. ER stress promoted growth and metabolism reductions, mainly in CSF18, from mild to higher TM. The lowest TM increased SbBiP and SbPDI chaperones, as well as SbbZIP60, and SbbIRE1 gene expressions, but mild and higher TM decreased it. However, CSF20 exhibited higher levels of SbBiP and SbbIRE1 transcripts. It corroborated different metabolic profiles among all TM treatments in CSF18 shoots and similarities between profiles of mild and higher TM in CSF18 roots. Conversely, TM profiles of both shoots and roots of CSF20 overlapped, although it was not complete under low TM treatment. Furthermore, ER stress induced an increase of carbohydrates (dihydroxyacetone in shoots, and cellobiose, maltose, ribose, and sucrose in roots), and organic acids (pyruvic acid in shoots, and butyric and succinic acids in roots) in CSF20, which exhibited a higher degree of ER stress tolerance compared to CSF18 with the root being the most affected plant tissue. Thus, our study provides new insights that may help to understand sorghum tolerance and the ER disturbance as significant contributor for stress adaptation and tolerance engineering.

植物触发内质网(ER)途径在胁迫下存活,但ER在植物耐受中的辅助作用仍有待探索。因此,我们选择了敏感和耐受的对比非生物胁迫高粱品种,以测试它们是否对ER胁迫具有一定程度的耐受性。因此,本工作评估了在高粱幼苗CSF18和CSF20的初始建立过程中衣霉素(TMµg mL-1)的新月形浓度:对照(0)、较低(0.5)、温和(1.5)和较高(2.5)。ER胁迫促进生长和代谢减少,主要是在CSF18中,从轻度到较高的TM。最低的TM增加了SbBiP和SbPDI伴侣蛋白,以及SbbZIP60和SbbIRE1基因的表达,但轻度和较高的TM降低了它。然而,CSF20表现出较高水平的SbBiP和SbbIRE1转录物。它证实了CSF18芽中所有TM处理之间的不同代谢谱,以及CSF18根中温和和较高TM的代谢谱之间的相似性。相反,CSF20的地上部和根部的TM剖面重叠,尽管在低TM处理下并不完全。此外,内质网应激诱导CSF20中碳水化合物(地上部的二羟基丙酮,根中的纤维二糖、麦芽糖、核糖和蔗糖)和有机酸(地上部中的丙酮酸,根部中的丁酸和琥珀酸)的增加,与CSF18相比,CSF20表现出更高程度的内质网应激耐受性,根是受影响最大的植物组织。因此,我们的研究提供了新的见解,可能有助于理解高粱的耐受性和ER干扰是应激适应和耐受工程的重要贡献者。
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引用次数: 0
Responses of multifunctional immune complement component 1q (C1q) and apoptosis-related genes in Macrophthalmus japonicus tissues and human cells following exposure to environmental pollutants. 多功能免疫补体组分1q(C1q)和凋亡相关基因在日本大蠊组织和人类细胞暴露于环境污染物后的反应。
IF 3.8 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2023-11-01 Epub Date: 2023-10-26 DOI: 10.1007/s12192-023-01389-y
Kiyun Park, Byoung-San Moon, Ihn-Sil Kwak

Apoptosis is a key defense process for multiple immune system functions, playing a central role in maintaining homeostasis and cell development. The purpose of this study was to evaluate the effects of environmental pollutant exposure on immune-related apoptotic pathways in crab tissues and human cells. To do this, we characterized the multifunctional immune complement component 1q (C1q) gene and analyzed C1q expression in Macrophthalmus japonicus crabs after exposure to di(2-ethylhexyl) phthalate (DEHP) or hexabromocyclododecanes (HBCDs). Moreover, the responses of apoptotic signal-related genes were observed in M. japonicus tissues and human cell lines (HEK293T and HCT116). C1q gene expression was downregulated in the gills and hepatopancreas of M. japonicus after exposure to DEHP or HBCD. Pollutant exposure also increased antioxidant enzyme activities and altered transcription of 15 apoptotic signaling genes in M. japonicus. However, patterns in apoptotic signaling in response to these pollutants differed in human cells. HBCD exposure generated an apoptotic signal (cleaved caspase-3) and inhibited cell growth in both cell lines, whereas DEHP exposure did not produce such a response. These results suggest that exposure to environmental pollutants induced different levels of immune-related apoptosis depending on the cell or tissue type and that this induction of apoptotic signaling may trigger an initiation of carcinogenesis in M. japonicus and in humans as consumers.

细胞凋亡是多种免疫系统功能的关键防御过程,在维持体内平衡和细胞发育中发挥着核心作用。本研究的目的是评估环境污染物暴露对螃蟹组织和人类细胞免疫相关凋亡途径的影响。为此,我们对多功能免疫补体组分1q(C1q)基因进行了表征,并分析了暴露于邻苯二甲酸二(2-乙基己基)酯(DEHP)或六溴环十二烷(HBCDs)后日本巨眼蟹C1q的表达。此外,在日本血吸虫组织和人细胞系(HEK293T和HCT116)中观察到凋亡信号相关基因的反应。暴露于DEHP或HBCD后,日本血吸虫鳃和肝胰腺中C1q基因表达下调。污染物暴露还增加了刺参的抗氧化酶活性,并改变了15个凋亡信号基因的转录。然而,人类细胞对这些污染物的凋亡信号传导模式不同。六溴环十二烷暴露在两种细胞系中都产生凋亡信号(裂解的胱天蛋白酶-3)并抑制细胞生长,而DEHP暴露没有产生这种反应。这些结果表明,暴露于环境污染物诱导了不同水平的免疫相关细胞凋亡,这取决于细胞或组织类型,并且这种凋亡信号的诱导可能引发日本血吸虫和作为消费者的人类的致癌作用。
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引用次数: 0
RETRACTED ARTICLE: circABCA3 knockdown relieves hypoxia-induced human cardiac microvascular endothelial cell dysfunction by targeting the miR-671-5p/PCSK9 axis. 文章摘要:circABCA3敲低通过靶向miR-671-5p/PCSK9轴缓解缺氧诱导的人心脏微血管内皮细胞功能障碍。
IF 3.3 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2023-11-01 Epub Date: 2023-09-07 DOI: 10.1007/s12192-023-01377-2
Hui Hui, Gaowa Zhao, Mingliang Du, Qin Yu
{"title":"RETRACTED ARTICLE: circABCA3 knockdown relieves hypoxia-induced human cardiac microvascular endothelial cell dysfunction by targeting the miR-671-5p/PCSK9 axis.","authors":"Hui Hui, Gaowa Zhao, Mingliang Du, Qin Yu","doi":"10.1007/s12192-023-01377-2","DOIUrl":"10.1007/s12192-023-01377-2","url":null,"abstract":"","PeriodicalId":9684,"journal":{"name":"Cell Stress & Chaperones","volume":" ","pages":"1069"},"PeriodicalIF":3.3,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10746671/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10161845","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
In an experimental myocardial infarction model, L-arginine pre-intervention may exert cardioprotective effects by regulating OTULIN levels and mitochondrial dynamics. 在实验性心肌梗死模型中,L-精氨酸预干预可通过调节 OTULIN 水平和线粒体动力学发挥心脏保护作用。
IF 3.8 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2023-11-01 Epub Date: 2023-08-29 DOI: 10.1007/s12192-023-01373-6
Sercan Kaya, Tuba Yalcın

The experimental myocardial infarction (MI) model originating from isoproterenol (ISO) is frequently preferred in research due to its similarity to MI-induced damage in humans. Beneficial effects of L-arginine (L-Arg), a semi-essential amino acid, in cardiovascular diseases have been shown in many studies. This study was carried out to determine whether L-Arg pre-intervention has protective effects on heart tissue in the experimental MI model. The 28 rats used in the study were randomly divided into 4 equal groups: control, L-Arg, ISO, and L-Arg+ISO. Upon completion of all applications, cardiac markers in serum and biochemical, histopathological, and immunohistochemical examinations in cardiac tissues were performed. Cardiac markers, histopathological changes, oxidative stress, inflammation, and apoptosis were increased in the experimental MI model. In addition, administration of ISO deregulated OTULIN levels and mitochondrial dynamics in heart tissue. However, L-Arg pre-intervention showed a significant protective effect against changes in ISO-induced MI. L-Arg supplementation with cardioprotective effect may reduce the risks of possible pathophysiological processes in MI.

异丙肾上腺素(ISO)诱发的实验性心肌梗塞(MI)模型因其与人类心肌梗塞诱发的损伤相似而经常成为研究的首选。许多研究表明,L-精氨酸(L-Arg)这种半必需氨基酸对心血管疾病有益。本研究旨在确定 L-Arg 预先干预是否对实验性心肌梗死模型中的心脏组织具有保护作用。研究中使用的 28 只大鼠被随机分为 4 组:对照组、L-Arg 组、ISO 组和 L-Arg+ISO 组。在完成所有应用后,对血清中的心脏标记物和心脏组织进行生化、组织病理学和免疫组化检查。实验性心肌梗死模型的心脏标志物、组织病理学变化、氧化应激、炎症和细胞凋亡均有所增加。此外,服用 ISO 会降低心脏组织中的 OTULIN 水平和线粒体动力学。然而,在 ISO 诱导的心肌梗死中,L-Arg 的预先干预显示出显著的保护作用。补充具有心脏保护作用的 L-Arg 可降低心肌梗死中可能出现的病理生理过程的风险。
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引用次数: 0
Construction of a prognostic model for lung adenocarcinoma based on heat shock protein-related genes and immune analysis. 基于热休克蛋白相关基因和免疫分析构建肺腺癌预后模型
IF 3.8 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2023-11-01 Epub Date: 2023-09-11 DOI: 10.1007/s12192-023-01374-5
Wangyan Zhou, Wei Zeng, Dayang Zheng, Xu Yang, Yongcheng Qing, Chunxiang Zhou, Xiang Liu

Lung adenocarcinoma (LUAD) represents a prevalent form of cancer, with low early diagnosis rates and high mortality rates, posing a global health challenge. Heat shock proteins (HSPs) assume a crucial role within the tumor immune microenvironment (TME) of LUAD. Here, a collection of 97 HSP-related genes (HSPGs) was assembled based on prior literature reports, of which 36 HSPGs were differentially expressed in LUAD. In The Cancer Genome Atlas (TCGA) cohort, we constructed a prognostic model for risk stratification and prognosis prediction by integrating 13 HSPGs. In addition, the prognostic significance and predictive efficacy of the HSP-related riskscore were examined and validated in the Gene Expression Omnibus (GEO) cohort. To facilitate the clinical use of this riskscore, we also established a nomogram scale by verifying its effectiveness through different methods. In light of these outcomes, we concluded a significant correlation between HSPs and TME in LUAD, and the riskscore can be a reliable prognostic indicator. Furthermore, this study evaluated the differences in immunophenoscore, tumor immune dysfunction and exclusion score, and sensitivity to several common chemotherapy drugs among LUAD individuals in different risk groups, which may aid in clinical decision-making for immune therapy and chemotherapy in LUAD individuals.

肺腺癌(LUAD)是一种普遍存在的癌症,其早期诊断率低、死亡率高,对全球健康构成了挑战。热休克蛋白(HSP)在肺腺癌的肿瘤免疫微环境(TME)中发挥着至关重要的作用。在此,我们根据先前的文献报道收集了97个HSP相关基因(HSPGs),其中36个HSPGs在LUAD中有差异表达。在癌症基因组图谱(TCGA)队列中,我们整合了13个HSPGs,构建了一个用于风险分层和预后预测的预后模型。此外,我们还在基因表达总库(GEO)队列中检验并验证了HSP相关风险评分的预后意义和预测效果。为了便于临床使用该风险评分,我们还通过不同的方法验证了其有效性,从而建立了一个提名图量表。根据这些结果,我们得出结论:在 LUAD 中,HSP 与 TME 之间存在显著相关性,风险评分可作为可靠的预后指标。此外,本研究还评估了不同风险组LUAD患者的免疫表观评分、肿瘤免疫功能障碍和排异评分以及对几种常见化疗药物敏感性的差异,这可能有助于LUAD患者免疫治疗和化疗的临床决策。
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引用次数: 0
The beauty and complexity of the small heat shock proteins: a report on the proceedings of the fourth workshop on small heat shock proteins. 小热休克蛋白的美丽与复杂性:第四届小热休克蛋白研讨会会议记录报告。
IF 3.8 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2023-11-01 Epub Date: 2023-07-18 DOI: 10.1007/s12192-023-01360-x
Heath Ecroyd, Britta Bartelt-Kirbach, Anat Ben-Zvi, Raffaella Bonavita, Yevheniia Bushman, Elena Casarotto, Ciro Cecconi, Wilson Chun Yu Lau, Jonathan D Hibshman, Joep Joosten, Virginia Kimonis, Rachel Klevit, Krzysztof Liberek, Kathryn A McMenimen, Tsukumi Miwa, Axel Mogk, Daniele Montepietra, Carsten Peters, Maria Teresa Rocchetti, Dominik Saman, Angela Sisto, Valentina Secco, Annika Strauch, Hideki Taguchi, Morgan Tanguay, Barbara Tedesco, Melinda E Toth, Zihao Wang, Justin L P Benesch, Serena Carra

The Fourth Cell Stress Society International workshop on small heat shock proteins (sHSPs), a follow-up to successful workshops held in 2014, 2016 and 2018, took place as a virtual meeting on the 17-18 November 2022. The meeting was designed to provide an opportunity for those working on sHSPs to reconnect and discuss their latest work. The diversity of research in the sHSP field is reflected in the breadth of topics covered in the talks presented at this meeting. Here we summarise the presentations at this meeting and provide some perspectives on exciting future topics to be addressed in the field.

继2014年、2016年和2018年成功举办小热休克蛋白(sHSPs)国际研讨会之后,第四届细胞应激学会小热休克蛋白(sHSPs)国际研讨会于2022年11月17-18日以虚拟会议的形式举行。此次会议旨在为从事小热休克蛋白研究的人员提供一个重新建立联系和讨论最新工作的机会。在本次会议上发表的演讲涵盖了广泛的主题,反映了 sHSP 领域研究的多样性。在此,我们对本次会议的发言进行了总结,并对该领域未来令人兴奋的研究课题提出了一些展望。
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引用次数: 0
Genome-wide analysis of the SPL transcription factor family and its response to water stress in sunflower (Helianthus annuus). 向日葵(Helianthus annuus)中 SPL 转录因子家族的全基因组分析及其对水分胁迫的响应。
IF 3.8 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2023-11-01 DOI: 10.1007/s12192-023-01388-z
Kundansing R Jadhao, Sonam S Kale, Nilesh S Chavan, Pandharinath H Janjal

SPL (SQUAMOSA promoter binding proteins-like) are plant-specific transcription factors that play essential roles in a variety of developmental processes as well as the ability to withstand biotic and abiotic stresses. To date, numerous species have been investigated for the SPL gene family, but so far, no SPL family genes have been thoroughly identified and characterized in the sunflower (Helianthus annuus). In this study, 25 SPL genes were identified in the sunflower genome and were unevenly distributed on 11 chromosomes. According to phylogeny analysis, 59 SPL genes from H. annuus, O. sativa, and A. thaliana were clustered into seven groups. Furthermore, the SPL genes in groups-I and II were demonstrated to be potential targets of miR156. Synteny analysis showed that 7 paralogous gene pairs exist in HaSPL genes and 26 orthologous gene pairs exist between sunflower and rice, whereas 21 orthologous gene pairs were found between sunflower and Arabidopsis. Segmental duplication appears to have played a vital role in the expansion processes of sunflower SPL genes, and because of selection pressure, all duplicated genes have undergone purifying selection. Tissue-specific gene expression analysis of the HaSBP genes proved their diverse spatiotemporal expression patterns, which were predominantly expressed in floral organs and differentially expressed in stem, axil, and root tissues. The expression pattern of HaSPL genes under water stress showed broad involvement of HaSPLs in the response to flood and drought stresses. This genome-wide identification investigation provides detailed information on the sunflower SPL transcription factor gene family and establishes a strong platform for future research on sunflower responses to abiotic stress tolerance.

SPL(SQUAMOSA 启动子结合蛋白样)是植物特异性转录因子,在各种发育过程以及抵御生物和非生物胁迫的能力中发挥着重要作用。迄今为止,已对许多物种的 SPL 基因家族进行了研究,但向日葵(Helianthus annuus)中的 SPL 家族基因迄今尚未得到彻底鉴定和表征。本研究在向日葵基因组中发现了 25 个 SPL 基因,它们不均匀地分布在 11 条染色体上。根据系统进化分析,向日葵、向日葵和大连向日葵的 59 个 SPL 基因被分为 7 组。此外,第一组和第二组中的 SPL 基因被证明是 miR156 的潜在靶标。合成分析表明,HaSPL基因中存在7对同源基因,向日葵与水稻之间存在26对同源基因,向日葵与拟南芥之间存在21对同源基因。片段复制似乎在向日葵 SPL 基因的扩增过程中发挥了重要作用,由于选择压力,所有复制基因都经历了纯化选择。HaSBP基因的组织特异性基因表达分析证明了其多样的时空表达模式,主要在花器官中表达,在茎、腋和根组织中有差异表达。HaSPL基因在水分胁迫下的表达模式表明,HaSPLs广泛参与了对洪水和干旱胁迫的响应。这项全基因组鉴定调查提供了向日葵 SPL 转录因子基因家族的详细信息,为今后研究向日葵对非生物胁迫耐受性的响应建立了一个强有力的平台。
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引用次数: 0
Genomic loss of the HSP70cA gene in the vertebrate lineage. 脊椎动物中 HSP70cA 基因的基因组缺失。
IF 3.8 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2023-11-01 DOI: 10.1007/s12192-023-01370-9
Alisha Merchant, Bradly I Ramirez, Melinda N Reyes, Dysocheata Van, Marilin Martinez-Colin, Damilola O Ojo, Esmeralda L Mazuca, Heidi J De La O, Abigayle M Glenn, Claudia G Lira, Hashimul Ehsan, Ermeng Yu, Gen Kaneko

Metazoan 70 kDa heat shock protein (HSP70) genes have been classified into four lineages: cytosolic A (HSP70cA), cytosolic B (HSP70cB), endoplasmic reticulum (HSP70er), and mitochondria (HSP70m). Because previous studies have identified no HSP70cA genes in vertebrates, we hypothesized that this gene was lost on the evolutionary path to vertebrates. To test this hypothesis, the present study conducted a comprehensive database search followed by phylogenetic and synteny analyses. HSP70cA genes were found in invertebrates and in two of the three subphyla of Chordata, Cephalochordata (lancelets) and Tunicata (tunicates). However, no HSP70cA gene was found in the genomes of Craniata (another subphylum of Chordata; lamprey, hagfish, elephant shark, and coelacanth), suggesting the loss of the HSP70cA gene in the early period of vertebrate evolution. Synteny analysis using available genomic resources indicated that the synteny around the HSP70 genes was generally conserved between tunicates but was largely different between tunicates and lamprey. These results suggest the presence of dynamic chromosomal rearrangement in early vertebrates that possibly caused the loss of the HSP70cA gene in the vertebrate lineage.

元古脊椎动物的 70 kDa 热休克蛋白(HSP70)基因被分为四系:细胞质 A(HSP70cA)、细胞质 B(HSP70cB)、内质网(HSP70er)和线粒体(HSP70m)。由于之前的研究在脊椎动物中没有发现 HSP70cA 基因,我们假设该基因在脊椎动物的进化过程中丢失了。为了验证这一假设,本研究进行了全面的数据库搜索,然后进行了系统发育和同源关系分析。在无脊椎动物以及脊索动物三个亚门中的两个亚门--头索类(Cephalochordata)和鳞鳃纲(Tunicata)--中发现了 HSP70cA 基因。然而,在颅骨动物(脊索动物的另一个亚门;灯鱼、长尾鳕、象鲨和腔棘鱼)的基因组中没有发现 HSP70cA 基因,这表明在脊椎动物进化的早期,HSP70cA 基因已经消失。利用现有基因组资源进行的合成分析表明,HSP70基因周围的合成在鳞翅目动物之间基本保持不变,但在鳞翅目动物和灯鱼之间则有很大差异。这些结果表明,在早期脊椎动物中存在动态染色体重排,可能导致脊椎动物系中 HSP70cA 基因的缺失。
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引用次数: 0
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Cell Stress & Chaperones
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