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Hypoxia inducible factor 1α-driven steroidogenesis impacts systemic hematopoiesis. 缺氧诱导因子1α驱动的甾体生成影响全身造血。
IF 10.2 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-25 DOI: 10.1186/s11658-025-00777-9
Deepika Watts, Nicolas Eberz, Mangesh T Jaykar, Anupam Sinha, Cagdas Ermis, Johanna Tiebel, Ulrike Baschant, Martina Rauner, Tatyana Grinenko, Triantafyllos Chavakis, Peter Mirtschink, Ali El-Armouche, Ben Wielockx

Background: Glucocorticoids (GCs) are key regulators of hematopoiesis, but the effects of chronically elevated endogenous GC levels on hematopoietic stem cell (HSC) function and immune cell development remain poorly understood.

Methods: We used a mouse model with adrenocortical cell-specific deletion of hypoxia-inducible factor-1 alpha (HIF1α; P2H1Ad.Cortex), which results in sustained and systemic elevation of GC. Hematopoietic stem and progenitor cell (HSPC) populations were analyzed phenotypically and functionally. Transplantation assays assessed the regenerative capacity of HSCs. To determine the role of glucocorticoid receptor (GR) signaling, bone marrow from GR-deficient or wild-type donors was transplanted into P2H1Ad.Cortex or wild-type (WT) recipients.

Results: Chronic GC exposure in P2H1Ad.Cortex mice resulted in HSPC expansion and promoted HSC quiescence and metabolic restraint. Functionally, these HSCs showed enhanced regenerative capacity with superior donor chimerism upon transplantation. There was a marked increase in myeloid progenitors and their progeny, including monocytes and granulocytes. In contrast, B-cell development was significantly impaired, with a developmental block at the pre-pro-B-cell stage. Transplantation studies confirmed that these effects were dependent on GR signaling.

Conclusions: Our study reveals a critical role for chronic GC-GR signaling in modulating HSC function, promoting myeloid output, and impairing B-cell development. The P2H1Ad.Cortex mouse model provides a valuable system to study the hematopoietic consequences of prolonged endogenous glucocorticoid exposure and may aid in understanding the hematologic complications of chronic GC therapy.

背景:糖皮质激素(GCs)是造血的关键调节因子,但长期升高的内源性GC水平对造血干细胞(HSC)功能和免疫细胞发育的影响尚不清楚。方法:采用肾上腺皮质细胞特异性缺失缺氧诱导因子-1 α (HIF1α; P2H1Ad)小鼠模型。皮质),这导致持续和系统性的GC升高。对造血干细胞和祖细胞(HSPC)群体进行表型和功能分析。移植试验评估造血干细胞的再生能力。为了确定糖皮质激素受体(GR)信号的作用,将GR缺陷或野生型供者的骨髓移植到P2H1Ad中。皮质或野生型(WT)受体。结果:P2H1Ad患者慢性GC暴露。皮质小鼠导致HSC扩增,促进HSC静止和代谢抑制。在功能上,这些造血干细胞在移植时表现出增强的再生能力和优越的供体嵌合性。髓系祖细胞及其后代,包括单核细胞和粒细胞显著增加。相比之下,b细胞发育明显受损,在pre-pro- b细胞阶段发育受阻。移植研究证实,这些作用依赖于GR信号传导。结论:我们的研究揭示了慢性GC-GR信号在调节HSC功能、促进髓输出和损害b细胞发育中的关键作用。P2H1Ad。皮质小鼠模型为研究长期内源性糖皮质激素暴露对造血的影响提供了一个有价值的系统,并可能有助于理解慢性GC治疗的血液学并发症。
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引用次数: 0
Cell death signaling and immune regulation: new perspectives on targeted therapy for sepsis. 细胞死亡信号和免疫调节:败血症靶向治疗的新视角。
IF 10.2 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-15 DOI: 10.1186/s11658-025-00784-w
Huang Wu, Jiale Cui, Jie Huang, Yuqi Feng, Jiaxin Zhao, Yalin Zhu, Xiaoming Deng, Xinyu Li, Wangzheqi Zhang, Changli Wang

Cell death is essential for the preservation of tissue homeostasis, regulating inflammatory responses, and shaping immune status. The mechanism of cell death includes apoptosis, pyroptosis, necroptosis, ferroptosis and autophagy. The onset, progression, and unfavorable prognosis of sepsis are closely associated with these pathways. Here, the mechanisms associated with these five major cell death pathways in sepsis are reviewed, emphasizing two core aspects of the condition: excessive inflammation and immune suppression. These pathways play a fundamental role in modulating these characteristics and offer novel therapeutic prospects. The study provides valuable insights and detailed analyses, making a significant contribution to ongoing research in this domain. The interconnected nature of cell death is highlighted, not only by examining the distinct roles of individual pathways but also by exploring the interactions between different pathways and the crosstalk among key signaling molecules or pathways, including the caspase family, gasdermin family, and NF-κB pathway. Further research should continue to investigate well-established cell death mechanisms while also identifying previously unknown pathways. Therapeutic strategies targeting cell death pathways hold broad application potential. However, during the transition from preclinical research to clinical application, several challenges remain, including limitations of experimental models, as well as the safety and efficacy of treatments. Additionally, the development of personalized treatment approaches tailored to the unique immune profiles of patients is crucial for advancing precision medicine. In conclusion, the present review offers an extensive analysis of the diverse roles of cell death in sepsis, with novel insights into disease mechanisms and guiding therapeutic developments.

细胞死亡对于维持组织稳态、调节炎症反应和塑造免疫状态至关重要。细胞死亡的机制包括凋亡、焦亡、坏死、铁亡和自噬。脓毒症的发生、发展和不良预后与这些途径密切相关。本文综述了脓毒症中与这五种主要细胞死亡途径相关的机制,强调了脓毒症的两个核心方面:过度炎症和免疫抑制。这些途径在调节这些特征中起着重要作用,并提供了新的治疗前景。该研究提供了有价值的见解和详细的分析,为该领域正在进行的研究做出了重大贡献。强调细胞死亡的相互联系本质,不仅通过检查单个途径的不同作用,而且通过探索不同途径之间的相互作用和关键信号分子或途径之间的串扰,包括caspase家族、gasdermin家族和NF-κB途径。进一步的研究应继续调查已确立的细胞死亡机制,同时确定以前未知的途径。针对细胞死亡途径的治疗策略具有广泛的应用潜力。然而,在从临床前研究到临床应用的过渡过程中,仍然存在一些挑战,包括实验模型的局限性,以及治疗的安全性和有效性。此外,开发针对患者独特免疫特征的个性化治疗方法对于推进精准医疗至关重要。总之,本综述对脓毒症中细胞死亡的不同作用进行了广泛的分析,对疾病机制和指导治疗发展有了新的见解。
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引用次数: 0
Palmitoylation: an emerging therapeutic target bridging physiology and disease. 棕榈酰化:一个连接生理和疾病的新兴治疗靶点。
IF 10.2 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-15 DOI: 10.1186/s11658-025-00776-w
Weini Li, Jie Shen, Aojia Zhuang, Ruiheng Wang, Quanqi Li, Anas Rabata, Yanan Zhang, DuoYao Cao

Palmitoylation is a reversible post-translational lipid modification of proteins, catalyzed by the Zinc finger DHHC domain-containing (ZDHHC) family of palmitoyltransferases. Palmitoylation plays a pivotal role in regulating localization, stability, trafficking, and interactions, thereby contributing to a wide range of cellular processes. Dysregulation of palmitoylation has been implicated in numerous pathological conditions, including metabolic disorders, muscular diseases, mitochondrial disorders, cancer, and neurodegeneration. In this review, we summarize recent advances in understanding S-palmitoylation, emphasizing its critical roles in protein regulation, cellular and physiological processes, and its implications in both health and disease. Additionally, we highlight emerging therapeutic opportunities and novel strategies in therapeutic applications targeting this lipid modification.

棕榈酰化是一种可逆的蛋白质翻译后脂质修饰,由含锌指DHHC结构域(ZDHHC)棕榈酰转移酶家族催化。棕榈酰化在调节定位、稳定性、运输和相互作用中起着关键作用,从而促进了广泛的细胞过程。棕榈酰化的失调与许多病理状况有关,包括代谢紊乱、肌肉疾病、线粒体紊乱、癌症和神经变性。在这篇综述中,我们总结了最近在理解s -棕榈酰化方面的进展,强调了它在蛋白质调节、细胞和生理过程中的关键作用,以及它在健康和疾病中的意义。此外,我们强调了针对这种脂质修饰的治疗应用中的新兴治疗机会和新策略。
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引用次数: 0
Modeling the effects of radiation on the bone tumor microenvironment: opportunities for exploring combination therapies in microphysiologic systems. 模拟辐射对骨肿瘤微环境的影响:探索微生理系统中联合治疗的机会。
IF 10.2 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-14 DOI: 10.1186/s11658-025-00774-y
Kailey N Jackett, Devin L DaPonte, Pranav Soman, Jason A Horton

Primary bone tumors and bone metastases represent significant challenges in oncology. Radiotherapy is an important adjuvant treatment for several primary bone and musculoskeletal tumors, as well as for palliative care for metastatic bone lesions. While effective in these applications, patients receiving skeletal radiation face a lifelong risk of fragility fracture at the irradiated sites, among other complications. Damage to bone could be reduced by development of tumor-selective radiosensitizers that would enhance the efficacy of radiotherapy, resulting in reducing the radiation dose delivered to the normal tissues. The creation of bone-selective radioprotection and radio-mitigant strategies that could respectively reduce the magnitude of off-target damage and stimulate functional recovery of the healthy bone microenvironment are warranted. Key barriers to progress in this field include the paucity and inconsistency of data on the skeletal effects of radiotherapy, low throughput and high cost of animal models, reproducibility challenges with in vitro experiments, and poor translational relevance of these models, which may not accurately replicate the human bone-tumor microenvironment. Microphysiological systems (MPS) will accelerate progress in this field by enabling rapid and cost-effective investigation while recapitulating the complexity of the bone-tumor microenvironment to more accurately model the collective response to therapy. Here, we summarize the current knowledge on the transient and long-lasting impacts of radiotherapy and explore opportunities for MPS to streamline and expand our knowledge base. We critically evaluate contemporary model systems, including MPS, and offer suggestions for how these systems can be used to efficiently model the intersection of skeletal radiobiology and bone cancer, and accelerate development of combination therapies.

原发性骨肿瘤和骨转移是肿瘤学领域的重大挑战。放射治疗是几种原发性骨和肌肉骨骼肿瘤的重要辅助治疗,也是转移性骨病变的姑息治疗。虽然在这些应用中有效,但接受骨骼放射治疗的患者在受照射部位面临终身脆性骨折的风险,以及其他并发症。肿瘤选择性放射增敏剂的开发可以减少对骨骼的损伤,从而提高放射治疗的疗效,从而减少输送到正常组织的辐射剂量。骨选择性放射保护和放射缓解策略的创建可以分别减少脱靶损伤的程度和刺激健康骨微环境的功能恢复是必要的。该领域进展的主要障碍包括放疗对骨骼影响的数据缺乏和不一致,动物模型的低通量和高成本,体外实验的可重复性挑战,以及这些模型的翻译相关性差,这些模型可能无法准确地复制人类骨肿瘤微环境。微生理系统(MPS)将加速这一领域的进展,使快速和具有成本效益的研究成为可能,同时概括骨肿瘤微环境的复杂性,更准确地模拟对治疗的集体反应。在这里,我们总结了目前关于放疗的短暂和长期影响的知识,并探索MPS简化和扩展我们知识库的机会。我们批判性地评估了包括MPS在内的当代模型系统,并就如何使用这些系统有效地模拟骨骼放射生物学和骨癌的交叉,以及加速联合治疗的发展提出了建议。
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引用次数: 0
M2 macrophage-derived extracellular vesicles protect against abdominal aortic aneurysm by modulating macrophage polarization through miR221-5p. M2巨噬细胞来源的细胞外囊泡通过miR221-5p调节巨噬细胞极化,保护腹主动脉瘤。
IF 10.2 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-10 DOI: 10.1186/s11658-025-00768-w
Yang Ma, Xiang-Jiu Ding, Si-Yu Lu, Xiao-Fang Huang, Yuan-Yuan Hu, Han Liu, Bin Liu, Ke-Yin Liu, Ming-Xiang Zhang, Hao Wang, Feng Xu, Wei-Dong Qin

Background: Extracellular vesicles (EVs) derived from M2 macrophages (M2-EVs) play a protective role in the pathogenesis of acute lung injury. However, their roles and mechanisms in abdominal aortic aneurysm (AAA) are unknown.

Methods: The effects of M2-EVs in AAA were examined in ApoE-/- mice with angiotensin II infusion. After M2 macrophages were stimulated with antisense oligonucleotides of miR221-5p (miR221-5p-ASOs), EVs were extracted and administered to mice via the tail vein. In vitro, the primary bone marrow-derived monocytes (BMDMs) were isolated and co-cultured with human aortic endothelial cells (HAECs) in Transwell chambers.

Results: M2-EVs significantly reduced AAA incidence and maximal aortic diameters, improved fiber continuity, increased α-SMA, and reduced macrophage infiltration in AAA mice. RNA sequencing revealed that miR221-5p was upregulated in M2-EVs and downregulated in AAA. miR221-5p-ASOs reduced the protection of M2-EVs in AAA mice. M2-EVs induced M2 macrophage polarization, while miR221-5p-ASOs had no effect. Moreover, M2-EVs alleviated oxidative stress and inflammatory responses in HAECs. Mechanistically, miR221-5p bound to poly(ADP-ribose) polymerase 1 (PARP-1) mRNA and reduced PARP-1 expression; PARP-1 was bound to protein phosphatase 1ɑ (PP-1ɑ) and negatively regulated its expression. In vitro experiments showed miR221-5p modulated macrophage polarization through the PARP-1/PP-1ɑ/JNK/c-Jun pathway. Macrophage deletion of PARP-1 inhibited AAA formation and phosphorylation of JNK/c-Jun in mice.

Conclusions: miR221-5p in M2-EVs plays a critical role in AAA pathophysiology by modulating macrophage polarization through PARP-1/PP-1ɑ/JNK/c-Jun signaling. M2-EVs and miR221-5p represent promising therapeutic options for AAA.

背景:来源于M2巨噬细胞(M2-EVs)的细胞外囊泡(Extracellular vesicles, EVs)在急性肺损伤的发病机制中起保护作用。然而,它们在腹主动脉瘤(AAA)中的作用和机制尚不清楚。方法:观察ApoE-/-小鼠灌胃血管紧张素II后,m2 - ev对AAA的影响。用miR221-5p反义寡核苷酸(miR221-5p- asos)刺激M2巨噬细胞后,提取ev并经尾静脉给药。体外分离原代骨髓源性单核细胞(bmdm),并在Transwell腔中与人主动脉内皮细胞(HAECs)共培养。结果:m2 - ev显著降低AAA小鼠的发生率和最大主动脉直径,改善纤维连续性,增加α-SMA,减少巨噬细胞浸润。RNA测序结果显示,miR221-5p在m2 - ev中表达上调,在AAA中表达下调,miR221-5p- asos降低了AAA小鼠对m2 - ev的保护作用。M2- ev诱导M2巨噬细胞极化,而miR221-5p-ASOs无影响。此外,m2 - ev还能减轻haec的氧化应激和炎症反应。在机制上,miR221-5p结合聚adp核糖聚合酶1 (PARP-1) mRNA并降低PARP-1的表达;PARP-1与蛋白磷酸酶1 (PP-1)结合,负向调控其表达。体外实验表明,miR221-5p通过PARP-1/PP-1 /JNK/c-Jun通路调控巨噬细胞极化。巨噬细胞缺失PARP-1抑制小鼠AAA的形成和JNK/c-Jun的磷酸化。结论:m2 - ev中的miR221-5p通过PARP-1/PP-1 /JNK/c-Jun信号通路调节巨噬细胞极化,在AAA的病理生理中起关键作用。m2 - ev和miR221-5p是治疗AAA的有希望的选择。
{"title":"M2 macrophage-derived extracellular vesicles protect against abdominal aortic aneurysm by modulating macrophage polarization through miR221-5p.","authors":"Yang Ma, Xiang-Jiu Ding, Si-Yu Lu, Xiao-Fang Huang, Yuan-Yuan Hu, Han Liu, Bin Liu, Ke-Yin Liu, Ming-Xiang Zhang, Hao Wang, Feng Xu, Wei-Dong Qin","doi":"10.1186/s11658-025-00768-w","DOIUrl":"10.1186/s11658-025-00768-w","url":null,"abstract":"<p><strong>Background: </strong>Extracellular vesicles (EVs) derived from M2 macrophages (M2-EVs) play a protective role in the pathogenesis of acute lung injury. However, their roles and mechanisms in abdominal aortic aneurysm (AAA) are unknown.</p><p><strong>Methods: </strong>The effects of M2-EVs in AAA were examined in ApoE<sup>-/-</sup> mice with angiotensin II infusion. After M2 macrophages were stimulated with antisense oligonucleotides of miR221-5p (miR221-5p-ASOs), EVs were extracted and administered to mice via the tail vein. In vitro, the primary bone marrow-derived monocytes (BMDMs) were isolated and co-cultured with human aortic endothelial cells (HAECs) in Transwell chambers.</p><p><strong>Results: </strong>M2-EVs significantly reduced AAA incidence and maximal aortic diameters, improved fiber continuity, increased α-SMA, and reduced macrophage infiltration in AAA mice. RNA sequencing revealed that miR221-5p was upregulated in M2-EVs and downregulated in AAA. miR221-5p-ASOs reduced the protection of M2-EVs in AAA mice. M2-EVs induced M2 macrophage polarization, while miR221-5p-ASOs had no effect. Moreover, M2-EVs alleviated oxidative stress and inflammatory responses in HAECs. Mechanistically, miR221-5p bound to poly(ADP-ribose) polymerase 1 (PARP-1) mRNA and reduced PARP-1 expression; PARP-1 was bound to protein phosphatase 1ɑ (PP-1ɑ) and negatively regulated its expression. In vitro experiments showed miR221-5p modulated macrophage polarization through the PARP-1/PP-1ɑ/JNK/c-Jun pathway. Macrophage deletion of PARP-1 inhibited AAA formation and phosphorylation of JNK/c-Jun in mice.</p><p><strong>Conclusions: </strong>miR221-5p in M2-EVs plays a critical role in AAA pathophysiology by modulating macrophage polarization through PARP-1/PP-1ɑ/JNK/c-Jun signaling. M2-EVs and miR221-5p represent promising therapeutic options for AAA.</p>","PeriodicalId":9688,"journal":{"name":"Cellular & Molecular Biology Letters","volume":"30 1","pages":"96"},"PeriodicalIF":10.2,"publicationDate":"2025-08-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12335759/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144815885","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Hypoxia-induced genome-wide DNA demethylation by DNMT3A and EMT of cancer cells. 缺氧诱导肿瘤细胞DNMT3A和EMT全基因组DNA去甲基化。
IF 10.2 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-05 DOI: 10.1186/s11658-025-00775-x
Biswanath Chatterjee, Pritha Majumder, Chun-Chang Chen, Jing-Ping Wang, Po-Hsuan Su, Hung-Cheng Lai, Ching-Chen Liu, Hsin-Nan Lin, Chen-Hsin A Yu, Hanna S Yuan, Che-Kun James Shen

Background: Despite the comprehensive advancement in the field of cancer therapeutics, there remains an urgent need to identify new pathophysiological mechanisms that can be targeted in isolation or in combination with existing therapeutic regimens. The epithelial-to-mesenchymal transitions (EMT) induced by hypoxia, cytokines, and growth factors involves acquisition of invasive and migratory properties by cancer cells. Epigenetic alterations of DNA methylations and/or histone modifications cause substantial transcriptomic reprogramming in cancer cells during EMT and metastasis, which can be therapeutically targeted by a thorough understanding of the mutual interactions among the epigenetic processes. Previously, the mammalian DNA methyltransferases (DNMTs) have been shown to possess redox- and Ca++- dependent active DNA 5mC demethylation activities in addition to the cytosine methylation activity.

Methods: In this study, we have carried out experiments using a range of molecular, cellular, and genome editing approaches including cell culturing, CRISPR/Cas9-editing, si- or sh-RNA-mediated knockdown, quantitative RT-PCR, western blotting, ChIP-qPCR, Na-bisulfite sequencing, EMT and lung colonization assays in conjunction with DNA methylome and DNMT3A ChIP-Seq analyses, RESULTS: We found that active DNA demethylation activity of DNMT3A is essential for hypoxia-induced EMT of the SW480 colon cancer cells, its global genomic DNA demethylation, and promoter DNA demethylation/transcriptional activation of EMT-associated genes including TWIST1 and SNAIL1. DNMT3A also regulates hypoxia-induced HIF-1α binding to and transcriptional activation of the TWIST1 promoter as well as genome-wide DNA demethylation and EMT of breast cancer and liver cancer cells. Mechanistic analysis supports a regulatory model where hypoxia-induced H3K36me3 mark recruits DNMT3A to demethylate CpG in the hypoxia-responsive element (HRE), thereby facilitating HIF-1α binding and activation of the promoters of EMT genes.

Conclusions: Altogether, this study has provided the first demonstration of a physiological function of the active DNA demethylation activity of the DNMTs. Equally important, our findings have revealed a missing link between the HIF-1α pathway and the O2-sensing KDM pathway both of which are known to be essential for a wide set of normal and disease-associated cellular processes. Finally, the active DNA demethylation activity of DNMT3A has now emerged as a new potential target for therapeutic development to prevent EMT and metastasis of cancer cells.

Clinical trial number: Not applicable.

背景:尽管癌症治疗领域取得了全面进展,但仍然迫切需要确定新的病理生理机制,这些机制可以单独靶向或与现有治疗方案结合。缺氧、细胞因子和生长因子诱导的上皮-间质转化(EMT)涉及癌细胞获得侵袭和迁移特性。在EMT和转移过程中,DNA甲基化和/或组蛋白修饰的表观遗传改变会导致癌细胞中大量的转录组重编程,通过彻底了解表观遗传过程之间的相互作用,可以靶向治疗。此前,哺乳动物DNA甲基转移酶(dnmt)除了胞嘧啶甲基化活性外,还具有氧化还原和Ca++依赖的活性DNA 5mC去甲基化活性。方法:在本研究中,我们使用一系列分子、细胞和基因组编辑方法进行了实验,包括细胞培养、CRISPR/ cas9编辑、si-或sh- rna介导的敲低、定量RT-PCR、western blotting、ChIP-qPCR、na -亚硫酸酯测序、EMT和肺部定植测定,以及DNA甲基化组和DNMT3A ChIP-Seq分析。我们发现DNMT3A活跃的DNA去甲基化活性对于缺氧诱导的SW480结肠癌细胞的EMT、其整体基因组DNA去甲基化以及EMT相关基因(包括TWIST1和SNAIL1)的启动子DNA去甲基化/转录激活至关重要。DNMT3A还调节缺氧诱导的HIF-1α结合和TWIST1启动子的转录激活,以及乳腺癌和肝癌细胞的全基因组DNA去甲基化和EMT。机制分析支持一种调控模型,即缺氧诱导的H3K36me3标记招募DNMT3A去甲基化缺氧反应元件(HRE)中的CpG,从而促进HIF-1α结合和EMT基因启动子的激活。结论:总的来说,这项研究首次证明了dnmt活性DNA去甲基化活性的生理功能。同样重要的是,我们的研究结果揭示了HIF-1α途径和o2传感KDM途径之间缺失的联系,这两个途径对于广泛的正常和疾病相关的细胞过程都是必不可少的。最后,DNMT3A活跃的DNA去甲基化活性现在已经成为治疗开发的新的潜在靶点,以防止癌细胞的EMT和转移。临床试验号:不适用。
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引用次数: 0
Xanthosine alleviates myocardial ischemia-reperfusion injury through attenuation of cardiomyocyte ferroptosis. 黄嘌呤通过抑制心肌细胞铁下垂减轻心肌缺血再灌注损伤。
IF 10.2 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-28 DOI: 10.1186/s11658-025-00766-y
Yang Xu, Wenfeng Zhou, Zhongguo Fan, Yiwei Cheng, Yujia Xiao, Yu Liu, Xinxin Li, Zhenjun Ji, Yi Fan, Genshan Ma

Background: Ischemic heart disease remains a leading cause of morbidity and mortality worldwide, with myocardial ischemia-reperfusion (I/R) injury significantly contributing to cardiomyocyte death and poor outcomes post-acute myocardial infarction (AMI). Emerging evidence highlights metabolic changes during myocardial injury, particularly in purine metabolism. This study investigates the protective role of xanthosine (XTS), a purine metabolism intermediate, in alleviating I/R injury.

Methods: Neonatal and adult mouse myocardial tissues post-myocardial infarction (MI) were analyzed using untargeted and targeted metabolomics to explore metabolic profiles. The effects of XTS on I/R injury were evaluated in vivo using a murine I/R model and in vitro with hypoxia/reoxygenation-treated neonatal rat cardiomyocytes (NRCMs). Cardiac function, fibrosis, apoptosis, oxidative stress markers, and ferroptosis-related pathways were assessed via echocardiography, biochemical assays, western blotting, and electron microscopy. Integrated drug affinity responsive target stability (DARTS)-based drug target screening and RNA-seq transcriptomic profiling elucidate XTS-mediated mechanisms against I/R injury.

Results: Metabolomics revealed distinct differences in purine metabolism between neonatal and adult mice post-MI, with significant XTS accumulation observed in neonatal hearts. In vivo, XTS treatment in adult mice enhanced left ventricular function, reduced fibrosis, and alleviated lipid peroxidation and mitochondrial damage post-I/R injury. In vitro, XTS significantly improved cardiomyocyte viability, reduced oxidative stress, and mitigated ferroptosis by restoring glutathione peroxidase 4 (GPX4) levels and reducing acyl-coenzyme A synthetase long-chain family member 4 (ACSL4) expression. Mechanistically, XTS stabilized metabolic enzymes, upregulated L-arginine and glutathione (GSH) to mitigate reactive oxygen species(ROS), and inhibited ferroptosis.

Conclusions: XTS, a key purine metabolism intermediate, improves cardiac remodeling and function following I/R injury by suppressing ferroptosis and reducing mitochondrial ROS production. These findings provide novel insights into the therapeutic potential of XTS as an adjunctive treatment for patients with AMI undergoing revascularization.

背景:缺血性心脏病仍然是世界范围内发病率和死亡率的主要原因,心肌缺血再灌注(I/R)损伤显著导致心肌细胞死亡和急性心肌梗死(AMI)后预后不良。新出现的证据强调心肌损伤期间的代谢变化,特别是嘌呤代谢。本研究探讨了嘌呤代谢中间体黄嘌呤(XTS)在减轻I/R损伤中的保护作用。方法:采用非靶向代谢组学和靶向代谢组学方法分析心肌梗死后新生小鼠和成年小鼠心肌组织的代谢谱。采用小鼠I/R模型和体外缺氧/再氧处理的新生大鼠心肌细胞(NRCMs)评估XTS对I/R损伤的影响。心功能、纤维化、细胞凋亡、氧化应激标志物和凋亡相关途径通过超声心动图、生化分析、免疫印迹和电子显微镜进行评估。基于药物亲和反应性靶标稳定性(DARTS)的药物靶标筛选和RNA-seq转录组学分析阐明了xts介导的I/R损伤机制。结果:代谢组学显示,心肌梗死后新生小鼠和成年小鼠的嘌呤代谢存在明显差异,在新生小鼠心脏中观察到显著的XTS积累。在体内,XTS治疗成年小鼠可增强左心室功能,减少纤维化,减轻i /R损伤后的脂质过氧化和线粒体损伤。在体外,XTS通过恢复谷胱甘肽过氧化物酶4 (GPX4)水平和降低酰基辅酶A合成酶长链家族成员4 (ACSL4)的表达,显著提高心肌细胞活力,降低氧化应激,减轻铁下垂。在机制上,XTS稳定代谢酶,上调l -精氨酸和谷胱甘肽(GSH)以减轻活性氧(ROS),并抑制铁下垂。结论:XTS是一种关键的嘌呤代谢中间体,通过抑制铁下沉和减少线粒体ROS的产生,改善I/R损伤后的心脏重塑和功能。这些发现为XTS作为AMI血运重建术患者辅助治疗的治疗潜力提供了新的见解。
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引用次数: 0
Perspectives on mitochondrial dysfunction in the regeneration of aging skeletal muscle. 老化骨骼肌再生中线粒体功能障碍的研究进展。
IF 10.2 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-28 DOI: 10.1186/s11658-025-00771-1
Kai Wang, Mailin Gan, Yuhang Lei, Tianci Liao, Jiaxin Li, Lili Niu, Ye Zhao, Lei Chen, Yan Wang, Li Zhu, Linyuan Shen

As the global population trends toward aging, the number of individuals suffering from age-related debilitating diseases is increasing. With advancing age, skeletal muscle undergoes progressive oxidative stress infiltration, coupled with detrimental factors such as impaired protein synthesis and mitochondrial DNA (mtDNA) mutations, culminating in mitochondrial dysfunction. Muscle stem cells (MuSCs), essential for skeletal muscle regeneration, also experience functional decline during this process, leading to irreversible damage to muscle integrity in older adults. A critical contributing factor is the loss of mitochondrial metabolism and function in MuSCs within skeletal muscle. The mitochondrial quality control system plays a pivotal role as a modulator, counteracting aging-associated abnormalities in energy metabolism and redox imbalance. Mitochondria meet functional demands through processes such as fission, fusion, and mitophagy. The significance of mitochondrial morphology and dynamics in the mechanisms of muscle regeneration has been consistently emphasized. In this review, we provide a comprehensive summary of recent advances in understanding the mechanisms of aging-related mitochondrial dysfunction and its role in hindering skeletal muscle regeneration. Additionally, we present novel insights into therapeutic approaches for treating aging-related myopathies.

随着全球人口走向老龄化,患有与年龄有关的衰弱性疾病的人数正在增加。随着年龄的增长,骨骼肌经历渐进式氧化应激浸润,再加上蛋白质合成受损和线粒体DNA (mtDNA)突变等不利因素,最终导致线粒体功能障碍。骨骼肌再生所必需的肌肉干细胞(MuSCs)在这一过程中也会经历功能衰退,导致老年人肌肉完整性受到不可逆转的损伤。一个关键的促成因素是骨骼肌中musc线粒体代谢和功能的丧失。线粒体质量控制系统作为一种调节剂,在能量代谢和氧化还原失衡中起着关键作用。线粒体通过裂变、融合和线粒体自噬等过程来满足功能需求。线粒体形态和动力学在肌肉再生机制中的重要性一直被强调。在这篇综述中,我们提供了一个全面的总结,了解与衰老相关的线粒体功能障碍的机制及其在阻碍骨骼肌再生中的作用的最新进展。此外,我们提出了新的见解,治疗方法的衰老相关的肌病。
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引用次数: 0
FLNA, a disulfidptosis-related gene, modulates tumor immunity and progression in colorectal cancer. FLNA是一种二硫分解相关基因,可调节结直肠癌的肿瘤免疫和进展。
IF 10.2 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-26 DOI: 10.1186/s11658-025-00761-3
Qiong Li, Renhong Huang, Lingling Lv, Haifeng Ying, Yuan Wu, YuQing Huang, Yuxi Li, Wen Ma, Xiaoshuang Liu, Qinghui Meng, Fengying Xing, Yan Shen, Lan Zheng

Background: Disulfidptosis represents a novel type of regulated cell death induced by excessively high intracellular levels of cystine. Targeting disulfide imbalance is considered a promising treatment approach for colorectal cancer (CRC). However, the involvement of disulfidptosis in CRC immunotherapy is undefined.

Methods: Unsupervised clustering was applied to The Cancer Genome Atlas (TCGA) datasets to classify disulfidptosis-related phenotypes. The tumor microenvironment (TME) was characterized using diverse bioinformatics algorithms, including gene set variation analysis (GSVA) for pathway enrichment analysis and CIBERSORT for immune cell profiling. A disulfidptosis-related gene (DRG) signature was generated for stratifying CRC cases, and univariate Cox regression was utilized for identifying prognostic DRGs. Filamin A (FLNA) was pinpointed as a pivotal regulator of disulfidptosis, and its functional impacts on tumor progression and immunotherapy response were further investigated.

Results: Two different groups were determined on the basis of the built disulfidptosis-related signature (DRS), showing distinct clinical outcomes, as well as different pathway activation, drug sensitivity, and immune infiltration patterns. The high-DRS subgroup correlated with poorer prognosis, elevated immunosuppressive cell activity, and reduced cytotoxic immune cell infiltration. FLNA emerged as a critical mediator of disulfidptosis in CRC, with its knockdown suppressing tumor cell migration and invasion in vitro. The FLNA inhibitor PTI-125 attenuated tumor growth and epithelial-mesenchymal transition (EMT), while FLNA depletion reversed glucose-driven metastasis. Notably, combined glucose transporter 1 (GLUT1) inhibition and anti-programmed cell death protein 1 (PD-1) therapy enhanced CD8+ T cell recruitment and suppressed EMT.

Conclusions: This study elucidates the interplay between disulfidptosis and the CRC immune landscape, highlighting FLNA as a therapeutic target. These findings suggest that modulating disulfidptosis in conjunction with immunotherapy may offer a novel treatment paradigm for CRC.

背景:双曲下垂是一种由细胞内胱氨酸水平过高引起的新型细胞死亡。靶向二硫失衡被认为是治疗结直肠癌(CRC)的一种有前景的方法。然而,在CRC的免疫治疗中,双曲下垂的参与是不明确的。方法:将无监督聚类应用于癌症基因组图谱(TCGA)数据集,对二硫塌陷相关表型进行分类。肿瘤微环境(TME)使用多种生物信息学算法进行表征,包括用于途径富集分析的基因集变异分析(GSVA)和用于免疫细胞谱分析的CIBERSORT。生成二硫分解相关基因(DRG)标记用于对CRC病例进行分层,并使用单变量Cox回归来识别预后DRG。Filamin A (FLNA)被确定为二翘下垂的关键调节因子,并进一步研究其对肿瘤进展和免疫治疗反应的功能影响。结果:根据建立的双硫中毒相关特征(DRS)确定了两组不同的患者,显示出不同的临床结果,以及不同的途径激活、药物敏感性和免疫浸润模式。高drs亚组预后较差,免疫抑制细胞活性升高,细胞毒性免疫细胞浸润减少。FLNA作为结直肠癌二亢的重要介质,其敲低可抑制肿瘤细胞在体外的迁移和侵袭。FLNA抑制剂PTI-125减弱肿瘤生长和上皮-间质转化(EMT),而FLNA耗尽逆转葡萄糖驱动的转移。值得注意的是,葡萄糖转运蛋白1 (GLUT1)抑制和抗程序性细胞死亡蛋白1 (PD-1)联合治疗增强了CD8+ T细胞募集,抑制了EMT。结论:本研究阐明了双曲下垂与结直肠癌免疫景观之间的相互作用,突出了FLNA作为治疗靶点。这些研究结果表明,结合免疫治疗调节双侧下垂可能为结直肠癌提供一种新的治疗模式。
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引用次数: 0
Molecular mechanisms and functions of protein acetylation in sepsis and sepsis-associated organ dysfunction. 蛋白乙酰化在败血症和败血症相关器官功能障碍中的分子机制和功能。
IF 10.2 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-26 DOI: 10.1186/s11658-025-00773-z
Yang-Fan Xu, Ni Yang, Peng-Hui Hao, Ri Wen, Tie-Ning Zhang

Sepsis, a life-threatening condition characterized by organ dysfunction due to dysregulated host response to infection, remains a global health challenge with high morbidity, mortality, and long-term sequelae. The development of sepsis-associated organ dysfunction (SAODs) substantially worsens prognosis. Despite extensive studies, the pathophysiological mechanisms underlying sepsis and SAODs remain unclear. Protein acetylation is a widespread and reversible post-translational modification regulated by acetyltransferases and deacetylases that occurs on both histone and non-histone proteins. This modification plays a critical role in modulating various cellular processes by modifying target proteins. Emerging evidence indicates that acetylation is involved in sepsis and SAODs through regulation of key biological processes. In this review, we discuss the regulatory enzymes and mechanisms of acetylation, highlight their roles in sepsis and associated organ dysfunction, and explore the potential of acetylation modulators as therapeutic agents, offering new insights into understanding sepsis and developing novel therapeutic strategies.

脓毒症是一种危及生命的疾病,其特征是由于宿主对感染的反应失调而导致器官功能障碍,是一种具有高发病率、高死亡率和长期后遗症的全球性健康挑战。脓毒症相关器官功能障碍(SAODs)的发展大大恶化了预后。尽管进行了广泛的研究,但脓毒症和SAODs的病理生理机制仍不清楚。蛋白质乙酰化是一种广泛的、可逆的翻译后修饰,由乙酰转移酶和去乙酰化酶调节,发生在组蛋白和非组蛋白上。这种修饰通过修饰靶蛋白在调节各种细胞过程中起着关键作用。新出现的证据表明,乙酰化通过调节关键的生物过程参与败血症和SAODs。在本文中,我们讨论了乙酰化的调控酶和机制,强调了它们在脓毒症和相关器官功能障碍中的作用,并探讨了乙酰化调节剂作为治疗药物的潜力,为理解脓毒症和开发新的治疗策略提供了新的见解。
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引用次数: 0
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