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Hepatitis B Virus x Protein Increases Cellular OCT3/4 and MYC and Facilitates Cellular Reprogramming. 乙型肝炎病毒x蛋白增加细胞OCT3/4和MYC,促进细胞重新编程。
IF 1.6 4区 医学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-10-01 Epub Date: 2023-09-26 DOI: 10.1089/cell.2023.0055
Madhusudana Girija Sanal, Sarita Gupta, Rahul Saha, Nisha Vats, Shiv Kumar Sarin
Hepatitis B virus x (HBx) is a multifunctional protein coded by the Hepatitis B virus that is involved in various cellular processes such as proliferation, cell survival/apoptosis, and histone methylation. HBx was reported to be associated with liver "cancer stem cells." The stemness inducing properties of HBx could also facilitate the generation of pluripotent stem cells from somatic cells. It is well established that somatic cells can be reprogrammed to induced pluripotent stem cells (iPSCs) using a cocktail of transcription factors called Yamanaka's factors (YFs) (OCT4, SOX2, KLF4, and MYC). The reprogramming process proceeds step-by-step with reprogramming factor chromatin interactions, transcription, and chromatin states changing during transitions. HBx is a "broad spectrum trans-activator" and therefore could facilitate these transitions. We electroporated low passage and high passage (difficult to reprogram) fibroblasts using YFs with and without HBx and evaluated the reprogramming efficiency. We also investigated the tri-lineage and terminal differentiation potential of iPSC derived using HBx. We found that the addition of HBx to YF improves iPSC derivation, and it increases the efficiency of iPSC generation from "difficult or hard-to-reprogram samples" such as high passage/senescent fibroblasts. Further, we show that HBx can substitute the key transcription factor MYC in the YF cocktail to generate iPSC. The cellular levels of OCT3/4 and MYC were increased in HBx expressing cells. Our results have practical value in improving the efficiency of pluripotent stem cell derivation from "difficult to reprogram" somatic cells, in addition to providing some insights into the mechanisms of liver carcinogenesis in chronic hepatitis B. To conclude, HBx improves the reprogramming efficiency of YFs. HBx increases the cellular levels of OCT3/4 and MYC.
乙型肝炎病毒x(HBx)是一种由乙型肝炎病毒编码的多功能蛋白,参与各种细胞过程,如增殖、细胞存活/凋亡和组蛋白甲基化。据报道,HBx与肝脏“癌症干细胞”有关。HBx的干诱导特性也可以促进体细胞产生多能干细胞。众所周知,可以使用称为Yamanaka因子(YFs)的转录因子混合物(OCT4、SOX2、KLF4和MYC)将体细胞重新编程为诱导多能干细胞(iPSC)。重编程过程逐步进行,重编程因子-染色质相互作用、转录和染色质状态在转换过程中发生变化。HBx是一种“广谱反式激活剂”,因此可以促进这些转变。我们使用含有和不含有HBx的YFs对低传代和高传代(难以重新编程)成纤维细胞进行电穿孔,并评估了重新编程的效率。我们还研究了使用HBx衍生的iPSC的三谱系和末端分化潜力。我们发现,在YF中添加HBx可以改善iPSC的衍生,并提高“难以或难以重新编程的样品”(如高传代/衰老成纤维细胞)产生iPSC的效率。此外,我们发现HBx可以取代YF混合物中的关键转录因子MYC来产生iPSC。在表达HBx的细胞中,OCT3/4和MYC的细胞水平增加。除了为慢性乙型肝炎的肝癌发生机制提供一些见解外,我们的研究结果在提高从“难以重新编程”体细胞衍生的多能干细胞的效率方面具有实际价值。总之,HBx提高了YFs的重新编程效率。HBx增加OCT3/4和MYC的细胞水平。
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引用次数: 0
Induced Pluripotent Stem Cell-Derived Chimeric Antigen Receptor T Cells: The Intersection of Stem Cells and Immunotherapy. 诱导的多能干细胞衍生的嵌合抗原受体T细胞:干细胞与免疫治疗的交叉。
IF 1.6 4区 医学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-10-01 Epub Date: 2023-09-29 DOI: 10.1089/cell.2023.0041
Mohammad Reza Lahimchi, Faezeh Maroufi, Amirhosein Maali

Chimeric antigen receptor (CAR) T cell therapy is a promising cell-based immunotherapy applicable to various cancers. High cost of production, immune rejection, heterogeneity of cell product, limited cell source, limited expandability, and relatively long production time have created the need to achieve a universal allogeneic CAR-T cell product for "off-the-shelf" application. Since the innovation of induced pluripotent stem cells (iPSCs) by Yamanaka et al., extensive efforts have been made to prepare an unlimited cell source for regenerative medicine, that is, immunotherapy. In the autologous grafting approach, iPSCs prepare the desired cell source for generating autologous CAR-T cells through more accessible and available sources. In addition, generating iPSC-derived CAR-T cells is a promising approach to achieving a suitable source for producing an allogeneic CAR-T cell product. In brief, the first step is reprogramming somatic cells (accessible from peripheral blood, skin, etc.) to iPSCs. In the next step, CAR expression and T cell lineage differentiation should be applied in different arrangements. In addition, in an allogeneic manner, human leukocyte antigen/T cell receptor (TCR) deficiency should be applied in iPSC colonies. The allogeneic iPSC-derived CAR-T cell experiments showed that simultaneous performance of HLA/TCR deficiency, CAR expression, and T cell lineage differentiation could bring the production to the highest efficacy in generating allogeneic iPSC-derived CAR-T cells.

嵌合抗原受体(CAR)T细胞疗法是一种很有前途的细胞免疫疗法,适用于各种癌症。高生产成本、免疫排斥反应、细胞产物的异质性、有限的细胞来源、有限的可扩展性和相对较长的生产时间,都产生了实现通用异基因CAR-T细胞产品“现成”应用的需求。自从Yamanaka等人创新诱导多能干细胞(iPSC)以来,人们已经做出了广泛的努力来制备用于再生医学的无限细胞源,即免疫疗法。在自体移植方法中,iPSC通过更容易获得和可用的来源制备所需的细胞源,用于产生自体CAR-T细胞。此外,产生iPSC衍生的CAR-T细胞是获得生产异基因CAR-T细胞产物的合适来源的一种有前途的方法。简而言之,第一步是将体细胞(可从外周血、皮肤等获得)重新编程为iPSC。下一步,CAR表达和T细胞谱系分化应以不同的方式应用。此外,以同种异体的方式,人类白细胞抗原/T细胞受体(TCR)缺乏症应应用于iPSC集落。异基因iPSC衍生的CAR-T细胞实验表明,HLA/TCR缺乏、CAR表达和T细胞谱系分化的同时表现可以使该产物在产生异基因iPSC-衍生的CART细胞方面达到最高功效。
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引用次数: 0
Efficient A·T-to-C·G Base Editing via Adenine Transversion Editors. 通过Adenine Transversion Editors进行高效的A·T到C·G基础编辑。
IF 1.6 4区 医学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-10-01 Epub Date: 2023-09-19 DOI: 10.1089/cell.2023.0094
Muhammad Arslan Mahmood

Generating A-to-C transversions to correct defective alleles or introduce novel alleles has posed significant challenges. However, two recent studies focusing on adenine transversions have achieved successful A-to-C transversions in mouse embryos and plant cell. These remarkable accomplishments notably broaden the range of base editing and their applications both in fundamental research and in therapeutics.

产生A-to-C颠换以纠正缺陷等位基因或引入新的等位基因带来了重大挑战。然而,最近两项专注于腺嘌呤转换的研究已经在小鼠胚胎和植物细胞中成功地实现了A-to-C转换。这些显著的成就显著拓宽了基础编辑的范围及其在基础研究和治疗学中的应用。
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引用次数: 0
Reprogramming Cell Identity: Past Lessons, Challenges, and Future Directions. 重新编程细胞身份:过去的教训,挑战和未来的方向。
IF 1.6 4区 医学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-10-01 DOI: 10.1089/cell.2023.0100
José C R Silva

Reprogramming is traditionally defined as the fate conversion of a cell to a stage of increased developmental potential. In its broader meaning, the reprogramming term is also applied to all forms of cell fate conversion that do not follow a developmental trajectory. Reprogramming is now a well-established field of research that gained rapid progress upon the advent of induced pluripotency. In this perspective, I reflect on the reprogramming lessons of the past, in the contributions to other fields of research and on the potential transformative future use of reprogrammed cells and of its cell derivatives.

重新编程传统上被定义为细胞命运转换到发育潜力增加的阶段。在更广泛的意义上,重编程术语也适用于不遵循发育轨迹的所有形式的细胞命运转换。重新编程现在是一个公认的研究领域,在诱导多能性出现后取得了快速进展。从这个角度来看,我反思了过去的重编程经验,对其他研究领域的贡献,以及重编程细胞及其细胞衍生物未来潜在的变革性用途。
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引用次数: 0
Proteomic Analysis and Reprogramming Potential of the Porcine Intra-Ooplasmic Nanovesicles. 猪卵浆内纳米囊泡的蛋白质组学分析和重编程潜力。
IF 1.6 4区 医学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-10-01 Epub Date: 2023-09-19 DOI: 10.1089/cell.2023.0050
Islam M Saadeldin, Seonggyu Bang, Abdulkadir Y Maigoro, Sung Ho Yun, Seung Ii Kim, Sanghoon Lee, Jongki Cho

Oocytes contain reprogramming machinery that can transform somatic cells into totipotent cells. In this study, we aimed to isolate and characterize nanovesicles from mature porcine oocytes and described them for the first time as "intra-ooplasmic vesicles (IOVs)". Isolated IOVs had an average diameter of 186.3 ± 10.8 nm. Proteomic analysis revealed 467 peptide reads, with the top 20 proteins related to reprogramming, antioxidative defense, cytoskeleton, heat shock proteins, and metabolism. Protein-protein interaction and gene ontology analysis indicated that these proteins were involved in various biological pathways, including protein folding, metabolism, and cellular responses to stress. Supplementing cultured fibroblasts with IOVs resulted in the expression of the pluripotency marker OCT4 and the early trophoblastic marker CDX2 and increased expression of the corresponding mRNAs together with increasing KLF4 and SALL4 expression. IOV treatment of fibroblasts for 14 consecutive days resulted in changes in cell morphology, with increased expression of ZEB2 and YBX3 as markers for epithelial-to-mesenchymal transition (EMT). These results provide a rationale for further characterization of IOVs, investigation of potential reprogramming capabilities for EMT, and the generation of induced pluripotent or oligopotent stem cells.

卵母细胞含有重编程机制,可以将体细胞转化为全能细胞。在本研究中,我们旨在从成熟的猪卵母细胞中分离和表征纳米囊泡,并首次将其描述为“卵浆内囊泡(IOVs)”。孤立IOV的平均直径为186.3 ± 10.8 nm。蛋白质组学分析显示467个肽读数,前20个蛋白质与重编程、抗氧化防御、细胞骨架、热休克蛋白和代谢有关。蛋白质-蛋白质相互作用和基因本体论分析表明,这些蛋白质参与各种生物学途径,包括蛋白质折叠、代谢和细胞对应激的反应。用IOVs补充培养的成纤维细胞导致多能性标记物OCT4和早期滋养层标记物CDX2的表达,并增加相应mRNA的表达,同时增加KLF4和SALL4的表达。成纤维细胞连续14天的IOV处理导致细胞形态的变化,ZEB2和YBX3的表达增加,作为上皮-间充质转化(EMT)的标志物。这些结果为IOVs的进一步表征、EMT潜在重编程能力的研究以及诱导多能干细胞或寡能干细胞的产生提供了基本原理。
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引用次数: 0
The Ethics of Cellular Reprogramming. 细胞重新编程的伦理学。
IF 1.6 4区 医学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-10-01 Epub Date: 2023-09-22 DOI: 10.1089/cell.2023.0091
Anna Smajdor, Adrian Villalba

Louise Brown's birth in 1978 heralded a new era not just in reproductive technology, but in the relationship between science, cells, and society. For the first time, human embryos could be created, selected, studied, manipulated, frozen, altered, or destroyed, outside the human body. But with this possibility came a plethora of ethical questions. Is it acceptable to destroy a human embryo for the purpose of research? Or to create an embryo with the specific purpose of destroying it for research? In an attempt to construct ethical and legal frameworks for the new era of cellular reprogramming, legislators and ethicists have tried to distinguish between different kinds of biological entity. We treat cells differently depending on whether they are human or animal, somatic cells or gametes, and on whether they are embryos or not. But this approach to the ethics of cellular reprogramming is doomed to failure for the simple reason that cellular reprogramming in itself destroys the distinctions that the law requires to function. In this article, we explore the historical trajectory of cellular reprogramming and its relationship with ethics and society. We suggest that the early hype of embryo research has not obviously fulfilled expectations, but since new avenues of research are continuously opening, it is hard to say definitely that these promises have been broken. We explore the forthcoming challenges posed by the creation of DNA from scratch in the laboratory, and the implications of this for understandings of identity, privacy, and reproduction. We conclude that while ethics used to seek answers in biological facts, this is no longer possible, and a new approach is required.

路易斯·布朗1978年的出生不仅预示着生殖技术的新时代,也预示着科学、细胞和社会之间的关系的新时代。人类胚胎首次可以在人体外被创造、选择、研究、操作、冷冻、改变或破坏。但随之而来的是大量的伦理问题。为了研究目的而破坏人类胚胎是可以接受的吗?或者创造一个胚胎,目的是为了研究而破坏它?为了为细胞重新编程的新时代构建伦理和法律框架,立法者和伦理学家试图区分不同种类的生物实体。我们对细胞的处理方式不同,这取决于它们是人还是动物,体细胞还是配子,以及它们是否是胚胎。但这种细胞重编程伦理的方法注定会失败,原因很简单,细胞重编程本身就破坏了法律所要求的功能区别。在这篇文章中,我们探讨了细胞重编程的历史轨迹及其与伦理和社会的关系。我们认为,早期对胚胎研究的炒作显然没有达到预期,但由于新的研究途径不断开辟,很难说这些承诺已经破灭。我们探讨了在实验室从头开始创造DNA所带来的即将到来的挑战,以及这对理解身份、隐私和繁殖的影响。我们得出的结论是,尽管伦理学过去常常从生物学事实中寻求答案,但这已经不可能了,需要一种新的方法。
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引用次数: 0
Human Induced Pluripotent Stem Cell-Derived Pericytes as Scalable and Editable Source to Study Direct Lineage Reprogramming Into Induced Neurons. 人类诱导的多能干细胞衍生的周细胞作为可扩展和可编辑的来源,研究将谱系重新编程为诱导的神经元。
IF 1.6 4区 医学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-10-01 Epub Date: 2023-06-27 DOI: 10.1089/cell.2023.0008
Radhika Menon, Linda Petrucci, Benjamin Lohrer, Jingzhong Zhang, Markus Schulze, Christian Schichor, Beate Winner, Jürgen Winkler, Markus J Riemenschneider, Ralf Kühn, Sven Falk, Marisa Karow

Studying human somatic cell-to-neuron conversion using primary brain-derived cells as starting cell source is hampered by limitations and variations in human biopsy material. Thus, delineating the molecular variables that allow changing the identity of somatic cells, permit adoption of neuronal phenotypes, and foster maturation of induced neurons (iNs) is challenging. Based on our previous results that pericytes derived from the adult human cerebral cortex can be directly converted into iNs (Karow et al., 2018; Karow et al., 2012), we here introduce human induced pluripotent stem cell (hiPSC)-derived pericytes (hiPSC-pericytes) as a versatile and more uniform tool to study the pericyte-to-neuron conversion process. This strategy enables us to derive scalable cell numbers and allows for engineering of the starting cell population such as introducing reporter tools before differentiation into hiPSC-pericytes and subsequent iN conversion. Harvesting the potential of this approach, we established hiPSC-derived human-human neuronal cocultures that not only allow for independent manipulation of each coculture partner but also resulted in morphologically more mature iNs. In summary, we exploit hiPSC-based methods to facilitate the analysis of human somatic cell-to-neuron conversion.

使用原代脑源细胞作为起始细胞源研究人类体细胞到神经元的转化受到人类活检材料的局限性和变异性的阻碍。因此,描述允许改变体细胞身份、允许采用神经元表型和促进诱导神经元(iNs)成熟的分子变量是具有挑战性的。基于我们之前的研究结果,即来源于成人大脑皮层的周细胞可以直接转化为iNs(Karow等人,2018;Karow et al.,2012),我们在这里介绍了人类诱导多能干细胞(hiPSC)来源的周细胞(hiPSC-周细胞),作为一种多功能、更统一的工具来研究周细胞到神经元的转化过程。这种策略使我们能够获得可扩展的细胞数量,并允许对起始细胞群体进行工程设计,例如在分化为hiPSC周细胞和随后的iN转化之前引入报告工具。利用这种方法的潜力,我们建立了hiPSC衍生的人-人神经元共培养物,不仅可以独立操纵每个共培养伙伴,还可以产生形态上更成熟的iNs。总之,我们利用基于hiPSC的方法来促进对人类体细胞到神经元转化的分析。
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引用次数: 0
Microscopic Analysis of Cell Fate Alteration Induced by Cell Fusion. 细胞融合诱导的细胞命运改变的显微镜分析。
IF 1.6 4区 医学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-10-01 DOI: 10.1089/cell.2023.0073
Taisei Kumazaki, Chinatsu Yonekawa, Tomomi Tsubouchi

In mammals, differentiated cells generally do not de-differentiate nor undergo cell fate alterations. However, they can be experimentally guided toward a different lineage. Cell fusion involving two different cell types has long been used to study this process, as this method induces cell fate alterations within hours to days in a subpopulation of fused cells, as evidenced by changes in gene-expression profiles. Despite the robustness of this system, its use has been restricted by low fusion rates and difficulty in eliminating unfused populations, thereby compromising resolution. In this study, we address these limitations by isolating fused cells using antibody-conjugated beads. This approach enables the microscopic tracking of fused cells starting as early as 5 hours after fusion. By taking advantage of species-specific FISH probes, we show that a small population of fused cells resulting from the fusion of mouse ES and human B cells, expresses OCT4 from human nuclei at levels comparable to human induced pluripotent stem cells (iPSCs) as early as 25 hours after fusion. We also show that this response can vary depending on the fusion partner. Our study broadens the usage of the cell fusion system for comprehending the mechanisms underlying cell fate alterations. These findings hold promise for diverse fields, including regenerative medicine and cancer.

在哺乳动物中,分化的细胞通常不会去分化,也不会发生细胞命运的改变。然而,可以通过实验引导它们走向不同的谱系。涉及两种不同细胞类型的细胞融合长期以来一直被用于研究这一过程,因为这种方法在数小时至数天内诱导融合细胞亚群中的细胞命运改变,基因表达谱的变化就是明证。尽管该系统具有稳健性,但其使用受到低融合率和难以消除未融合人群的限制,从而影响了分辨率。在这项研究中,我们通过使用抗体偶联的珠分离融合细胞来解决这些限制。这种方法能够最早在融合后5小时开始对融合细胞进行显微镜跟踪。通过利用物种特异性FISH探针,我们发现,由小鼠ES细胞和人B细胞融合产生的一小群融合细胞最早在融合后25小时就从人细胞核表达OCT4,其水平与人诱导多能干细胞(iPSC)相当。我们还表明,这种反应可能因聚变伙伴的不同而有所不同。我们的研究拓宽了细胞融合系统的用途,以了解细胞命运改变的潜在机制。这些发现为包括再生医学和癌症在内的各个领域带来了希望。
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引用次数: 0
Reprogramming Stars #13: Establishing Connections with Cellular Reprogramming-An Interview with Dr. Daniella Rylander Ottosson. 重编程明星 #13:与细胞重编程建立联系--专访 Daniella Rylander Ottosson 博士。
IF 1.6 4区 医学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-08-01 DOI: 10.1089/cell.2023.0078
Daniella Rylander Ottosson, Carlos-Filipe Pereira
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引用次数: 0
Unleashing Ascl1: Exploring Cross-Lineage Potential in Reprogramming and Regenerative Frontiers. 释放Ascl1:探索重编程和再生前沿的跨谱系潜力。
IF 1.6 4区 医学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-08-01 DOI: 10.1089/cell.2023.0080
Camila Vazquez Echegaray

In the era of stem cell research and regenerative medicine, understanding the regulatory networks that drive cellular reprogramming is fundamental. The study entitled "Cross-lineage potential of Ascl1 uncovered by comparing diverse reprogramming regulatomes" published in Stem Cell Reports sheds light on the remarkable versatility of Ascl1, a transcription factor known for its pivotal role in neurogenesis. By comparing regulatomes across multiple cell lineages, the authors have elucidated the potential of Ascl1 to facilitate the conversion of non-neural cells into various lineages beyond its canonical neural fate, suggesting its potential as a master regulator for lineage reprogramming. These observations challenge our current understanding of cell fate determination and open exciting avenues for regenerative medicine.

在干细胞研究和再生医学的时代,理解驱动细胞重编程的调控网络是至关重要的。这项名为“通过比较不同重编程调节因子发现Ascl1的跨谱系潜力”的研究发表在《干细胞报告》上,揭示了Ascl1的显著多功能性,Ascl1是一种在神经发生中起关键作用的转录因子。通过比较多个细胞系的调节因子,作者阐明了Ascl1促进非神经细胞向各种细胞系转化的潜力,而不是其典型的神经命运,这表明它有可能成为谱系重编程的主要调节因子。这些观察结果挑战了我们目前对细胞命运决定的理解,并为再生医学开辟了令人兴奋的途径。
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引用次数: 0
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