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Partial Reprogramming as a Method for Regenerating Neural Tissues in Aged Organisms. 部分重编程作为老化生物体神经组织再生的一种方法
IF 1.6 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-02-01 DOI: 10.1089/cell.2023.0123
Ali Saber Sichani, Somayeh Khoddam, Shayan Shakeri, Zahra Tavakkoli, Arad Ranji Jafroodi, Reza Dabbaghipour, Mohsen Sisakht, Jafar Fallahi

Aging causes numerous age-related diseases, leading the human species to death. Nevertheless, rejuvenating strategies based on cell epigenetic modifications are a possible approach to counteract disease progression while getting old. Cell reprogramming of adult somatic cells toward pluripotency ought to be a promising tool for age-related diseases. However, researchers do not have control over this process as cells lose their fate, and cause potential cancerous cells or unexpected cell phenotypes. Direct and partial reprogramming were introduced in recent years with distinctive applications. Although direct reprogramming makes cells lose their identity, it has various applications in regeneration medicine. Temporary and regulated in vivo overexpression of Yamanaka factors has been shown in several experimental contexts to be achievable and is used to rejuvenate mice models. This regeneration can be accomplished by altering the epigenetic adult cell signature to the signature of a younger cell. The greatest advantage of partial reprogramming is that this method does not allow cells to lose their identity when they are resetting their epigenetic clock. It is a regimen of short-term Oct3/4, Sox2, Klf4, and c-Myc expression in vivo that prevents full reprogramming to the pluripotent state and avoids both tumorigenesis and the presence of unwanted undifferentiated cells. We know that many neurological age-related diseases, such as Alzheimer's disease, stroke, dementia, and Parkinson's disease, are the main cause of death in the last decades of life. Therefore, scientists have a special tendency regarding neuroregeneration methods to increase human life expectancy.

衰老会引发许多与年龄有关的疾病,导致人类死亡。然而,基于细胞表观遗传修饰的返老还童策略是对抗衰老过程中疾病进展的一种可行方法。对成年体细胞进行细胞重编程,使其具有多能性,这应该是治疗老年相关疾病的一种很有前景的工具。然而,研究人员无法控制这一过程,因为细胞会失去其命运,导致潜在的癌细胞或意想不到的细胞表型。近年来,直接重编程和部分重编程相继问世,并得到了不同的应用。虽然直接重编程会使细胞失去其特性,但它在再生医学中却有多种应用。在一些实验环境中,山中因子的临时和调节性体内过表达已被证明是可以实现的,并被用于小鼠模型的再生。这种再生可通过改变成体细胞的表观遗传学特征,使之成为年轻细胞的特征来实现。部分重编程的最大优势在于,这种方法不会让细胞在重置表观遗传时钟时失去自己的身份。这是一种在体内短期表达 Oct3/4、Sox2、Klf4 和 c-Myc 的方案,可防止完全重编程为多能状态,避免肿瘤发生和出现不需要的未分化细胞。我们知道,许多与神经系统有关的老年疾病,如阿尔茨海默病、中风、痴呆症和帕金森病,是人在生命最后几十年死亡的主要原因。因此,科学家们特别倾向于采用神经再生方法来延长人类的寿命。
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引用次数: 0
Reprogramming Stars #14: Fast-Forwarding Cellular Reprogramming- An Interview with Dr. Mark Kotter. 重编程之星 #14:快速推进细胞重编程--马克-科特博士访谈。
IF 1.6 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-02-01 DOI: 10.1089/cell.2024.29111.mk
Mark R Kotter, Carlos-Filipe Pereira
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引用次数: 0
Gene Therapy-Mediated Partial Reprogramming Extends Lifespan and Reverses Age-Related Changes in Aged Mice. 基因疗法介导的部分重编程延长了老年小鼠的寿命并逆转了与年龄有关的变化。
IF 1.6 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-02-01 DOI: 10.1089/cell.2023.0072
Carolina Cano Macip, Rokib Hasan, Victoria Hoznek, Jihyun Kim, Yuancheng Ryan Lu, Louis E Metzger, Saumil Sethna, Noah Davidsohn

Aging is a complex progression of changes best characterized as the chronic dysregulation of cellular processes leading to deteriorated tissue and organ function. Although aging cannot currently be prevented, its impact on life- and healthspan in the elderly can potentially be minimized by interventions that aim to return these cellular processes to optimal function. Recent studies have demonstrated that partial reprogramming using the Yamanaka factors (or a subset; OCT4, SOX2, and KLF4; OSK) can reverse age-related changes in vitro and in vivo. However, it is still unknown whether the Yamanaka factors (or a subset) are capable of extending the lifespan of aged wild-type (WT) mice. In this study, we show that systemically delivered adeno-associated viruses, encoding an inducible OSK system, in 124-week-old male mice extend the median remaining lifespan by 109% over WT controls and enhance several health parameters. Importantly, we observed a significant improvement in frailty scores indicating that we were able to improve the healthspan along with increasing the lifespan. Furthermore, in human keratinocytes expressing exogenous OSK, we observed significant epigenetic markers of age reversal, suggesting a potential reregulation of genetic networks to a younger potentially healthier state. Together, these results may have important implications for the development of partial reprogramming interventions to reverse age-associated diseases in the elderly.

衰老是一个复杂的变化过程,其最大特点是细胞过程长期失调,导致组织和器官功能衰退。虽然衰老目前无法预防,但通过干预措施,使这些细胞过程恢复到最佳功能,就有可能最大限度地减少衰老对老年人生命和健康寿命的影响。最近的研究表明,利用山中因子(或其子集:OCT4、SOX2 和 KLF4;OSK)进行部分重编程,可以在体外和体内逆转与衰老有关的变化。然而,山中因子(或其子集)是否能延长野生型(WT)小鼠的寿命仍是一个未知数。在这项研究中,我们发现在124周大的雄性小鼠体内系统递送的腺相关病毒编码了一种可诱导的OSK系统,与WT对照组相比,中位剩余寿命延长了109%,并提高了多项健康指标。重要的是,我们观察到虚弱评分有了明显改善,这表明我们在延长寿命的同时也改善了健康状况。此外,在表达外源 OSK 的人类角质形成细胞中,我们观察到了显著的年龄逆转表观遗传标记,这表明基因网络有可能被重新调节到更年轻、更健康的状态。总之,这些结果可能对开发部分重编程干预措施以逆转老年人与年龄相关的疾病具有重要意义。
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引用次数: 0
Cloned Foal Born from Postmortem-Obtained Ear Sample Refrigerated for 5 Days Before Fibroblast Isolation and Decontamination of the Infected Monolayer Culture. 在成纤维细胞分离和净化受感染的单层培养物之前,将从死后获得的耳部样本冷藏 5 天,克隆出小马。
IF 1.6 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-02-01 Epub Date: 2024-01-23 DOI: 10.1089/cell.2023.0076
Jenin V Cortez, Kylie Hardwicke, Christopher G Grupen, Muren Herrid, Zoltan Machaty, Gábor Vajta

A 6-year-old mare, a valuable polo horse, died of complications following postcolic surgery. To preserve its genetics, ear skin samples were collected immediately after death and stored in an equine embryo transfer medium at 4°C for 5 days. After trypsin digestion, monolayer fibroblast cultures were established, but signs of massive bacterial infection were found in all of them. As an ultimate attempt for rescue, rigorously and repeatedly washed cells were individually cultured in all wells of four 96-well dishes. New monolayers were established from the few wells without contamination and used for somatic cell nuclear transfer. Four of the six Day 7 blastocysts derived from 14 reconstructed zygotes were transferred in four naturally cycling mares on Day 5 after ovulation. The embryo transfers resulted in 2 pregnancies, one from a fresh and one from a vitrified blastocyst. The vitrified embryo transfer resulted in a healthy offspring, now 21 months old, genetically and phenotypically identical to the somatic cell donor animal.

一匹 6 岁的母马是一匹珍贵的马球马,在结肠手术后死于并发症。为了保存其基因,我们在其死后立即采集了耳部皮肤样本,并在 4°C 的马胚胎移植培养基中保存了 5 天。胰蛋白酶消化后,建立了单层成纤维细胞培养基,但在所有培养基中都发现了大量细菌感染的迹象。作为最终的拯救尝试,在四个 96 孔培养皿的所有孔中分别培养了经过严格和反复清洗的细胞。从少数未受污染的孔中培养出新的单层细胞,并用于体细胞核移植。在排卵后的第 5 天,将 14 个重建的合子所产生的 6 个第 7 天囊胚中的 4 个移植给 4 只自然周期母马。胚胎移植后,有两只母马怀孕,一只来自新鲜囊胚,一只来自玻璃化囊胚。玻璃化胚胎移植产生了一个健康的后代,现已 21 个月大,其基因和表型与体细胞供体动物完全相同。
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引用次数: 0
Acknowledgment of Reviewers 2023. 鸣谢 2023 年审稿人。
IF 1.6 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-22 DOI: 10.1089/cell.2024.29105.ack
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引用次数: 0
Sustained Vision Recovery by OSK Gene Therapy in a Mouse Model of Glaucoma 在青光眼小鼠模型中通过 OSK 基因疗法持续恢复视力
IF 1.6 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-07 DOI: 10.1089/cell.2023.0074
M. Karg, Y. Lu, Nasrin Refaian, James Cameron, Emma Hoffmann, Cindy Hoppe, Shintaro Shirahama, Madhura Shah, Drenushe Krasniqi, A. Krishnan, Maleeka Shrestha, Yinjie Guo, Jennifer M. Cermak, Michel Walthier, Kasia Broniowska, Sharon Rosenzweig-Lipson, M. Gregory-Ksander, David A. Sinclair, Bruce R. Ksander
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引用次数: 0
SIRT6 Knockdown in Buffalo Fetal Fibroblasts Exacerbates Premature Senescence Caused by DNA and Telomere Damage. 水牛胎儿成纤维细胞SIRT6基因敲除加剧DNA和端粒损伤引起的早衰。
IF 1.6 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-01 Epub Date: 2023-09-19 DOI: 10.1089/cell.2023.0048
Jingyuan Liang, Jiayu Cui, Juanru Cheng, Yu Pan, Ruimen Zhang, Sufang Yang, Lingxiu Zou

As a gene with antiaging functions, sirtuin6 (SIRT6) belonging to the sirtuin family plays a vital role in DNA repair, telomerase function, and cellular senescence, as well as maintains epigenomic stability and promotes longevity. However, its role in cell senescence in large animals, such as buffaloes, remains unknown. Fibroblasts are commonly used for somatic reprogramming, and their physiological characteristics affect the efficiency of this process. We aimed to elucidate the role of SIRT6 in cellular senescence and proliferation and analyze its effect on the biological function of buffalo fibroblasts to help improve the efficiency of buffalo somatic cell reprogramming. The expression of SIRT6 and related DNA damage was measured in buffalo fibroblasts obtained at different developmental stages (in the fetus and at 3 and 10 years of age), and the effect of SIRT6 knockdown on the senescence of buffalo fetal fibroblast was investigated. An inverse relationship was observed between SIRT6 expression and senescence in buffalo fibroblasts obtained from animals of various ages. This was accompanied by decreased cell growth, viability, and increased DNA damage. Short hairpin RNA-mediated SIRT6 knockdown accelerated the senescence of buffalo fetal fibroblasts. It blocked the cell cycle during in vitro cell culture, which further enhanced DNA damage, particularly with respect to the telomeres. Collectively, our findings suggest that SIRT6 expression was closely associated with buffalo senescence in fibroblasts. These findings serve as a foundation to better understand the cellular functions of SIRT6 and also aid in selecting donor cells for buffalo somatic cell reprogramming.

作为一种具有抗衰老功能的基因,属于sirtuin家族的sirtuin6(SIRT6)在DNA修复、端粒酶功能和细胞衰老中发挥着至关重要的作用,并保持表观基因组的稳定性和促进寿命。然而,它在大型动物(如水牛)细胞衰老中的作用尚不清楚。成纤维细胞通常用于体细胞重编程,其生理特性影响这一过程的效率。我们旨在阐明SIRT6在细胞衰老和增殖中的作用,并分析其对水牛成纤维细胞生物学功能的影响,以帮助提高水牛体细胞重编程的效率。测定了在不同发育阶段(胎儿、3岁和10岁)获得的水牛成纤维细胞中SIRT6的表达和相关的DNA损伤,并研究了SIRT6敲低对水牛胎儿成纤维细胞衰老的影响。在从不同年龄的动物获得的水牛成纤维细胞中观察到SIRT6表达与衰老之间的反比关系。这伴随着细胞生长、活力的下降和DNA损伤的增加。短发夹RNA介导的SIRT6敲除加速了水牛胎儿成纤维细胞的衰老。它在体外细胞培养过程中阻断了细胞周期,从而进一步增强了DNA损伤,尤其是端粒损伤。总之,我们的研究结果表明,SIRT6的表达与水牛成纤维细胞的衰老密切相关。这些发现为更好地了解SIRT6的细胞功能奠定了基础,也有助于选择水牛体细胞重编程的供体细胞。
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引用次数: 0
Low-Intensity Nanosecond Pulsed Electric Field Accelerates Osteogenic Transformation of Human Dermal Fibroblasts by Enhancing Cell Pluripotency. 低强度纳秒脉冲电场通过增强细胞多能性促进人真皮成纤维细胞成骨转化。
IF 1.6 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-01 Epub Date: 2023-11-27 DOI: 10.1089/cell.2023.0059
Jingtian Lai, Zewei Wang, Haiying Zhou, Pengfei Li, Hui Lu, Tian Tu

Autologous human fibroblasts have the potential to differentiate into the osteogenic lineage under specific conditions and can be utilized for bone regeneration. However, their efficiency is currently unsatisfactory. Recently, low-intensity nanosecond pulsed electric field (nsPEF) stimulation has been demonstrated to enhance cell pluripotency by activating epigenetic regulatory pathways. In this study, human dermal fibroblasts were exposed to different intensities of nsPEF to assess whether these exposures resulted in changes in proliferation rate, calcium salt deposition, and expression of differentiation-related markers in different experimental groups. The results showed a significant increase in cell proliferation, pluripotency, bone marker expression, and osteogenic differentiation efficiency when stimulating cells with 5 kV/cm of nsPEF. However, cell proliferation and differentiation significantly decreased at 25 kV/cm. Additionally, the proliferation and efficiency of osteogenic differentiation were reduced when the nsPEF intensity was increased to 50 kV/cm. Treatment with a 5 kV/cm of nsPEF led to increased and concentrated expression of Yes-Associated Protein (YAP) in the nucleus. These observations suggest that human dermal fibroblasts possess a heightened potential to differentiate into osteogenic cells when activated with nsPEF at 5 kV/cm. Consequently, the nsPEF strengthening strategy shows promise for fibroblast-based tissue-engineered bone repair research.

自体人成纤维细胞在特定条件下具有向成骨谱系分化的潜力,可用于骨再生。然而,目前它们的效率并不令人满意。最近,低强度纳秒脉冲电场(nsPEF)刺激已被证明通过激活表观遗传调控通路来增强细胞的多能性。在本研究中,我们将人真皮成纤维细胞暴露于不同强度的nsPEF中,以评估这些暴露是否会导致不同实验组中增殖率、钙盐沉积和分化相关标志物表达的变化。结果显示,以5kv /cm的nsPEF刺激细胞时,细胞增殖、多能性、骨标志物表达和成骨分化效率显著增加。但在25 kV/cm时,细胞增殖和分化明显降低。此外,当nsPEF强度增加到50 kV/cm时,细胞增殖和成骨分化效率降低。5kv /cm的nsPEF处理导致细胞核中yes相关蛋白(YAP)的表达增加和集中。这些观察结果表明,当用5kv /cm的nsPEF激活时,人类真皮成纤维细胞具有更高的分化成成骨细胞的潜力。因此,nsPEF增强策略显示了基于成纤维细胞的组织工程骨修复研究的前景。
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引用次数: 0
Allogeneic Mesenchymal Stem Cells After In Vivo Transplantation: A Review. 同种异体间充质干细胞体内移植研究进展
IF 1.6 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-01 Epub Date: 2023-11-16 DOI: 10.1089/cell.2023.0084
Derek B Asserson

Autologous mesenchymal stem cells (MSCs) are ideal for tissue regeneration because of their ability to circumvent host rejection, but their procurement and processing present logistical and time-sensitive challenges. Allogeneic MSCs provide an alternative cell-based therapy capable of positively affecting all human organ systems, and can be readily available. Extensive research has been conducted in the treatment of autoimmune, degenerative, and inflammatory diseases with such stem cells, and has demonstrated predominantly safe outcomes with minimal complications. Nevertheless, continued clinical trials are necessary to ascertain optimal harvest and transplant techniques.

自体间充质干细胞(MSCs)是组织再生的理想选择,因为它们具有规避宿主排斥反应的能力,但它们的获取和处理存在物流和时间敏感的挑战。同种异体间充质干细胞提供了一种替代性的基于细胞的治疗方法,能够对所有人体器官系统产生积极的影响,并且可以很容易地获得。在用这种干细胞治疗自身免疫性疾病、退行性疾病和炎症性疾病方面进行了广泛的研究,并证明了主要安全的结果和最小的并发症。然而,继续的临床试验是必要的,以确定最佳的收获和移植技术。
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引用次数: 0
Gene Regulatory Networks: Improving Inferences with Transfer Learning. 基因调控网络:利用迁移学习改进推断。
IF 1.6 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-01 DOI: 10.1089/cell.2023.0095
Marcelo Tigre Moura

Deep transfer learning improves the inference of gene regulatory networks in human cells, reveals disease-associated genes, and identifies network-based druggable targets in human heart disease.

深度迁移学习改进了人类细胞中基因调控网络的推断,揭示了疾病相关基因,并确定了人类心脏病中基于网络的药物靶点。
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引用次数: 0
期刊
Cellular reprogramming
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