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Redox regulation of TRIM28 facilitates neuronal ferroptosis by promoting SUMOylation and inhibiting OPTN-selective autophagic degradation of ACSL4
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-28 DOI: 10.1038/s41418-025-01452-4
Wei Liu, Yufeng Zhu, Wu Ye, Junjun Xiong, Haofan Wang, Yu Gao, Shixue Huang, Yinuo Zhang, Xin Zhou, Xuhui Zhou, Xuhui Ge, Weihua Cai, Xingdong Zheng

Ferroptosis is one of the cell death programs occurring after spinal cord injury (SCI) and is driven by iron-dependent phospholipid peroxidation. However, little is known about its underlying regulation mechanism. The present study demonstrated that lipid peroxidation was promoted in patients with SCI. Neurons affected by ferroptosis following SCI had a high expression of ferroptotic protein ACSL4. The E3 SUMOylase TRIM28 promoted neuronal ferroptosis by enhancing ACSL4 expression. Genetic deletion of Trim28 significantly attenuated neuronal ferroptosis and improved mouse hindlimb motor function following SCI. In contrast, mice with Trim28 overexpression demonstrated poor neurological function after SCI, which was attenuated by ferroptosis inhibitor Liproxstatin-1. Mechanistically, TRIM28 bound to ACSL4, promoted SUMO3 modification at lysine (K) 532, and inhibited K63-linked ACSL4 ubiquitination, thereby suppressing OPTN-dependent autophagic degradation. Additionally, SENP3 was identified as the deSUMOylation enzyme that can reverse this process and compete with TRIM28, which was transcriptionally upregulated due to excessive oxidative stress. These data unveiled a mechanism by which TRIM28-mediated SUMOylation regulated neuronal ACSL4 levels and ferroptosis, identified interactions and correlations involved in ACSL4 SUMOylation, ubiquitination, and autophagic degradation, and discovered a positive feedback loop where oxidative stress transcriptionally upregulated Trim28, and conversely TRIM28 promoted ferroptosis and oxidative stress. Notably, screening of the FDA-approved drug library revealed that pharmacological TRIM28/ACSL4 axis interventions with Rutin hydrate inhibited neuronal ferroptosis and improved hindlimb motor function in mice after SCI, thus providing a promising therapeutic strategy for its treatment.

{"title":"Redox regulation of TRIM28 facilitates neuronal ferroptosis by promoting SUMOylation and inhibiting OPTN-selective autophagic degradation of ACSL4","authors":"Wei Liu, Yufeng Zhu, Wu Ye, Junjun Xiong, Haofan Wang, Yu Gao, Shixue Huang, Yinuo Zhang, Xin Zhou, Xuhui Zhou, Xuhui Ge, Weihua Cai, Xingdong Zheng","doi":"10.1038/s41418-025-01452-4","DOIUrl":"https://doi.org/10.1038/s41418-025-01452-4","url":null,"abstract":"<p>Ferroptosis is one of the cell death programs occurring after spinal cord injury (SCI) and is driven by iron-dependent phospholipid peroxidation. However, little is known about its underlying regulation mechanism. The present study demonstrated that lipid peroxidation was promoted in patients with SCI. Neurons affected by ferroptosis following SCI had a high expression of ferroptotic protein ACSL4. The E3 SUMOylase TRIM28 promoted neuronal ferroptosis by enhancing ACSL4 expression. Genetic deletion of <i>Trim28</i> significantly attenuated neuronal ferroptosis and improved mouse hindlimb motor function following SCI. In contrast, mice with <i>Trim28</i> overexpression demonstrated poor neurological function after SCI, which was attenuated by ferroptosis inhibitor Liproxstatin-1. Mechanistically, TRIM28 bound to ACSL4, promoted SUMO3 modification at lysine (K) 532, and inhibited K63-linked ACSL4 ubiquitination, thereby suppressing OPTN-dependent autophagic degradation. Additionally, SENP3 was identified as the deSUMOylation enzyme that can reverse this process and compete with TRIM28, which was transcriptionally upregulated due to excessive oxidative stress. These data unveiled a mechanism by which TRIM28-mediated SUMOylation regulated neuronal ACSL4 levels and ferroptosis, identified interactions and correlations involved in ACSL4 SUMOylation, ubiquitination, and autophagic degradation, and discovered a positive feedback loop where oxidative stress transcriptionally upregulated <i>Trim28</i>, and conversely TRIM28 promoted ferroptosis and oxidative stress. Notably, screening of the FDA-approved drug library revealed that pharmacological TRIM28/ACSL4 axis interventions with Rutin hydrate inhibited neuronal ferroptosis and improved hindlimb motor function in mice after SCI, thus providing a promising therapeutic strategy for its treatment.</p>","PeriodicalId":9731,"journal":{"name":"Cell Death and Differentiation","volume":"89 1","pages":""},"PeriodicalIF":12.4,"publicationDate":"2025-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143049941","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Age-related p53 SUMOylation accelerates senescence and tau pathology in Alzheimer’s disease
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-28 DOI: 10.1038/s41418-025-01448-0
Lu Wan, Fumin Yang, Anqi Yin, Yong Luo, Yi Liu, Fei Liu, Jian-Zhi Wang, Rong Liu, Xiaochuan Wang

Aging is a major risk factor for Alzheimer’s disease (AD). With the prevalence of AD increased, a mechanistic linkage between aging and the pathogenesis of AD needs to be further addressed. Here, we report that a small ubiquitin-related modifier (SUMO) modification of p53 is implicated in the process which remarkably increased in AD patient’s brain. Mechanistically, SUMOylation of p53 at K386 residue causes the dissociation of SET/p53 complex, thus releasing SET into the cytoplasm, SET further interacts with cytoplasmic PP2A and inhibits its activity, resulting in tau hyperphosphorylation in neurons. In addition, SUMOylation of p53 promotes the p53 Ser15 phosphorylation that mediates neuronal senescence. Notably, p53 SUMOylation contributes to synaptic damage and cognitive defects in AD model mice. We also demonstrate that the SUMOylation inhibiter, Ginkgolic acid, recovering several senescent phenotypes drove by p53 SUMOylation in primary neurons. These findings suggest a previously undiscovered etiopathogenic relationship between aging and AD that is linked to p53 SUMOylation and the potential of SUMOylated p53-based therapeutics for neurodegeneration such as Alzheimer’s disease.

{"title":"Age-related p53 SUMOylation accelerates senescence and tau pathology in Alzheimer’s disease","authors":"Lu Wan, Fumin Yang, Anqi Yin, Yong Luo, Yi Liu, Fei Liu, Jian-Zhi Wang, Rong Liu, Xiaochuan Wang","doi":"10.1038/s41418-025-01448-0","DOIUrl":"https://doi.org/10.1038/s41418-025-01448-0","url":null,"abstract":"<p>Aging is a major risk factor for Alzheimer’s disease (AD). With the prevalence of AD increased, a mechanistic linkage between aging and the pathogenesis of AD needs to be further addressed. Here, we report that a small ubiquitin-related modifier (SUMO) modification of p53 is implicated in the process which remarkably increased in AD patient’s brain. Mechanistically, SUMOylation of p53 at K386 residue causes the dissociation of SET/p53 complex, thus releasing SET into the cytoplasm, SET further interacts with cytoplasmic PP2A and inhibits its activity, resulting in tau hyperphosphorylation in neurons. In addition, SUMOylation of p53 promotes the p53 Ser15 phosphorylation that mediates neuronal senescence. Notably, p53 SUMOylation contributes to synaptic damage and cognitive defects in AD model mice. We also demonstrate that the SUMOylation inhibiter, Ginkgolic acid, recovering several senescent phenotypes drove by p53 SUMOylation in primary neurons. These findings suggest a previously undiscovered etiopathogenic relationship between aging and AD that is linked to p53 SUMOylation and the potential of SUMOylated p53-based therapeutics for neurodegeneration such as Alzheimer’s disease.</p>","PeriodicalId":9731,"journal":{"name":"Cell Death and Differentiation","volume":"20 1","pages":""},"PeriodicalIF":12.4,"publicationDate":"2025-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143049943","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
YAP/TEAD4/SP1-induced VISTA expression as a tumor cell-intrinsic mechanism of immunosuppression in colorectal cancer
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-28 DOI: 10.1038/s41418-025-01446-2
Zhehui Zhu, Rui Ding, Wei Yu, Yun Liu, Zhaocai Zhou, Chen-Ying Liu

Hyperactivation of the YAP/TEAD transcriptional complex in cancers facilitates the development of an immunosuppressive tumor microenvironment. Herein, we observed that the transcription factor SP1 physically interacts with and stabilizes the YAP/TEAD complex at regulatory genomic loci in colorectal cancer (CRC). In response to serum stimulation, PKCζ (protein kinase C ζ) was found to phosphorylate SP1 and enhance its interaction with TEAD4. As a result, SP1 enhanced the transcriptional activity of YAP/TEAD and coregulated the expression of a group of YAP/TEAD target genes. The immune checkpoint V-domain Ig suppressor of T-cell activation (VISTA) was identified as a direct target of the SP1-YAP/TEAD4 complex and found to be widely expressed in CRC cells. Importantly, YAP-induced VISTA upregulation in human CRC cells was found to strongly suppress the antitumor function of CD8+ T cells. Consistently, elevated VISTA expression was found to be correlated with hyperactivation of the SP1-YAP/TEAD axis and associated with poor prognosis of CRC patients. In addition, we found by serendipity that enzymatic deglycosylation significantly improved the anti-VISTA antibody signal intensity, resulting in more accurate detection of VISTA in clinical tumor samples. Overall, our study identified SP1 as a positive modulator of YAP/TEAD for the transcriptional regulation of VISTA and developed a protein deglycosylation strategy to better detect VISTA expression in clinical samples. These findings revealed a new tumor cell-intrinsic mechanism of YAP/TAZ-mediated cancer immune evasion.

{"title":"YAP/TEAD4/SP1-induced VISTA expression as a tumor cell-intrinsic mechanism of immunosuppression in colorectal cancer","authors":"Zhehui Zhu, Rui Ding, Wei Yu, Yun Liu, Zhaocai Zhou, Chen-Ying Liu","doi":"10.1038/s41418-025-01446-2","DOIUrl":"https://doi.org/10.1038/s41418-025-01446-2","url":null,"abstract":"<p>Hyperactivation of the YAP/TEAD transcriptional complex in cancers facilitates the development of an immunosuppressive tumor microenvironment. Herein, we observed that the transcription factor SP1 physically interacts with and stabilizes the YAP/TEAD complex at regulatory genomic loci in colorectal cancer (CRC). In response to serum stimulation, PKCζ (protein kinase C ζ) was found to phosphorylate SP1 and enhance its interaction with TEAD4. As a result, SP1 enhanced the transcriptional activity of YAP/TEAD and coregulated the expression of a group of YAP/TEAD target genes. The immune checkpoint V-domain Ig suppressor of T-cell activation (VISTA) was identified as a direct target of the SP1-YAP/TEAD4 complex and found to be widely expressed in CRC cells. Importantly, YAP-induced VISTA upregulation in human CRC cells was found to strongly suppress the antitumor function of CD8<sup>+</sup> T cells. Consistently, elevated VISTA expression was found to be correlated with hyperactivation of the SP1-YAP/TEAD axis and associated with poor prognosis of CRC patients. In addition, we found by serendipity that enzymatic deglycosylation significantly improved the anti-VISTA antibody signal intensity, resulting in more accurate detection of VISTA in clinical tumor samples. Overall, our study identified SP1 as a positive modulator of YAP/TEAD for the transcriptional regulation of VISTA and developed a protein deglycosylation strategy to better detect VISTA expression in clinical samples. These findings revealed a new tumor cell-intrinsic mechanism of YAP/TAZ-mediated cancer immune evasion.</p><figure></figure>","PeriodicalId":9731,"journal":{"name":"Cell Death and Differentiation","volume":"25 1","pages":""},"PeriodicalIF":12.4,"publicationDate":"2025-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143049944","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Crosstalk between GLTSCR1-deficient endothelial cells and tumour cells promotes colorectal cancer development by activating the Notch pathway
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-27 DOI: 10.1038/s41418-025-01450-6
Lu Liu, Fengyan Han, Mengli Deng, Qizheng Han, Maode Lai, Honghe Zhang

Cancer stem cells (CSCs) typically reside in perivascular niches, but whether endothelial cells of blood vessels influence the stemness of cancer cells remains poorly understood. This study revealed that endothelial cell-specific GLTSCR1 deletion promotes colorectal cancer (CRC) tumorigenesis and metastasis by increasing cancer cell stemness. Mechanistically, knocking down GLTSCR1 induces the transformation of endothelial cells into tip cells by regulating the expression of Neuropilin-1 (NRP1), thereby increasing the direct contact and interaction between endothelial cells and tumour cells. In addition, GLTSCR1 inhibits JAG1 transcription by competing with acetylated p65(Lys-310) to bind to the BRD4 interaction site. Therefore, GLTSCR1 deficiency increases JAG1 expression in endothelial cells. Subsequently, increased JAG1 levels on tip cell membranes bind to Notch on CRC cell membranes, activating the Notch signalling pathway in tumour cells and increasing CRC cell stemness. Taken together, our findings highlight the roles of endothelial cells in CRC development.

{"title":"Crosstalk between GLTSCR1-deficient endothelial cells and tumour cells promotes colorectal cancer development by activating the Notch pathway","authors":"Lu Liu, Fengyan Han, Mengli Deng, Qizheng Han, Maode Lai, Honghe Zhang","doi":"10.1038/s41418-025-01450-6","DOIUrl":"https://doi.org/10.1038/s41418-025-01450-6","url":null,"abstract":"<p>Cancer stem cells (CSCs) typically reside in perivascular niches, but whether endothelial cells of blood vessels influence the stemness of cancer cells remains poorly understood. This study revealed that endothelial cell-specific GLTSCR1 deletion promotes colorectal cancer (CRC) tumorigenesis and metastasis by increasing cancer cell stemness. Mechanistically, knocking down GLTSCR1 induces the transformation of endothelial cells into tip cells by regulating the expression of Neuropilin-1 (NRP1), thereby increasing the direct contact and interaction between endothelial cells and tumour cells. In addition, GLTSCR1 inhibits JAG1 transcription by competing with acetylated p65<sup>(Lys-310)</sup> to bind to the BRD4 interaction site. Therefore, GLTSCR1 deficiency increases JAG1 expression in endothelial cells. Subsequently, increased JAG1 levels on tip cell membranes bind to Notch on CRC cell membranes, activating the Notch signalling pathway in tumour cells and increasing CRC cell stemness. Taken together, our findings highlight the roles of endothelial cells in CRC development.</p>","PeriodicalId":9731,"journal":{"name":"Cell Death and Differentiation","volume":"114 1","pages":""},"PeriodicalIF":12.4,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143049945","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Age-dependent differences in breast tumor microenvironment: challenges and opportunities for efficacy studies in preclinical models
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-27 DOI: 10.1038/s41418-025-01447-1
Paolo Falvo, Stephan Gruener, Stefania Orecchioni, Federica Pisati, Giovanna Talarico, Giulia Mitola, Davide Lombardi, Giulia Bravetti, Juliane Winkler, Iros Barozzi, Francesco Bertolini

Immunity suffers a function deficit during aging, and the incidence of cancer is increased in the elderly. However, most cancer models employ young mice, which are poorly representative of adult cancer patients. We have previously reported that Triple-Therapy (TT), involving antigen-presenting-cell activation by vinorelbine and generation of TCF1+-stem-cell-like T cells (scTs) by cyclophosphamide significantly improved anti-PD-1 efficacy in anti-PD1-resistant models like Triple-Negative Breast Cancer (TNBC) and Non-Hodgkin’s Lymphoma (NHL), due to T-cell-mediated tumor killing. Here, we describe the effect of TT on TNBC growth and on tumor-microenvironment (TME) of young (6–8w, representative of human puberty) versus adult (12 m, representative of 40y-humans) mice. TT-efficacy was similar in young and adults, as CD8+ scTs were only marginally reduced in adults. However, single-cell analyses revealed major differences in the TME: adults had fewer CD4+ scTs, B-naïve and NK-cells, and more memory-B-cells. Cancer-associated-fibroblasts (CAF) with an Extracellular Matrix (ECM) deposition-signature (Matrix-CAFs) were more common in young mice, while pro-inflammatory stromal populations and myofibroblasts were more represented in adults. Matrix-CAFs in adult mice displayed decreased ECM-remodeling abilities, reduced collagen deposition, and a different pattern of interactions with the other cells of the TME. Taken together, our results suggest that age-dependent differences in the TME should be considered when designing preclinical studies.

{"title":"Age-dependent differences in breast tumor microenvironment: challenges and opportunities for efficacy studies in preclinical models","authors":"Paolo Falvo, Stephan Gruener, Stefania Orecchioni, Federica Pisati, Giovanna Talarico, Giulia Mitola, Davide Lombardi, Giulia Bravetti, Juliane Winkler, Iros Barozzi, Francesco Bertolini","doi":"10.1038/s41418-025-01447-1","DOIUrl":"https://doi.org/10.1038/s41418-025-01447-1","url":null,"abstract":"<p>Immunity suffers a function deficit during aging, and the incidence of cancer is increased in the elderly. However, most cancer models employ young mice, which are poorly representative of adult cancer patients. We have previously reported that Triple-Therapy (TT), involving antigen-presenting-cell activation by vinorelbine and generation of TCF1<sup>+</sup>-stem-cell-like T cells (scTs) by cyclophosphamide significantly improved anti-PD-1 efficacy in anti-PD1-resistant models like Triple-Negative Breast Cancer (TNBC) and Non-Hodgkin’s Lymphoma (NHL), due to T-cell-mediated tumor killing. Here, we describe the effect of TT on TNBC growth and on tumor-microenvironment (TME) of young (6–8w, representative of human puberty) versus adult (12 m, representative of 40y-humans) mice. TT-efficacy was similar in young and adults, as CD8<sup>+</sup> scTs were only marginally reduced in adults. However, single-cell analyses revealed major differences in the TME: adults had fewer CD4<sup>+</sup> scTs, B-naïve and NK-cells, and more memory-B-cells. Cancer-associated-fibroblasts (CAF) with an Extracellular Matrix (ECM) deposition-signature (Matrix-CAFs) were more common in young mice, while pro-inflammatory stromal populations and myofibroblasts were more represented in adults. Matrix-CAFs in adult mice displayed decreased ECM-remodeling abilities, reduced collagen deposition, and a different pattern of interactions with the other cells of the TME. Taken together, our results suggest that age-dependent differences in the TME should be considered when designing preclinical studies.</p>","PeriodicalId":9731,"journal":{"name":"Cell Death and Differentiation","volume":"59 1","pages":""},"PeriodicalIF":12.4,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143049946","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
ARID1A mutations protect follicular lymphoma from FAS-dependent immune surveillance by reducing RUNX3/ETS1-driven FAS-expression ARID1A突变通过降低RUNX3/ ets1驱动的fas表达来保护滤泡性淋巴瘤免受fas依赖性免疫监视
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-23 DOI: 10.1038/s41418-025-01445-3
Martina Antoniolli, Maria Solovey, Johannes Adrian Hildebrand, Tabea Freyholdt, Carolin Dorothea Strobl, Deepak Bararia, William David Keay, Louisa Adolph, Michael Heide, Verena Passerini, Lis Winter, Lucas Wange, Wolfgang Enard, Susanne Thieme, Helmut Blum, Martina Rudelius, Julia Mergner, Christina Ludwig, Sebastian Bultmann, Marc Schmidt-Supprian, Heinrich Leonhardt, Marion Subklewe, Michael von Bergwelt-Baildon, Maria Colomé-Tatché, Oliver Weigert

The cell death receptor FAS and its ligand (FASLG) play crucial roles in the selection of B cells during the germinal center (GC) reaction. Failure to eliminate potentially harmful B cells via FAS can lead to lymphoproliferation and the development of B cell malignancies. The classic form of follicular lymphoma (FL) is a prototypic GC-derived B cell malignancy, characterized by the t(14;18)(q32;q21)IGH::BCL2 translocation and overexpression of antiapoptotic BCL2. Additional alterations were shown to be clinically relevant, including mutations in ARID1A. ARID1A is part of the SWI/SNF nucleosome remodeling complex that regulates DNA accessibility (“openness”). However, the mechanism how ARID1A mutations contribute to FL pathogenesis remains unclear. We analyzed 151 FL biopsies of patients with advanced-stage disease at initial diagnosis and found that ARID1A mutations were recurrent and mainly disruptive, with an overall frequency of 18%. Additionally, we observed that ARID1A mutant FL showed significantly lower FAS protein expression in the FL tumor cell population. Functional experiments in BCL2-translocated lymphoma cells demonstrated that ARID1A is directly involved in the regulation of FAS, and ARID1A loss leads to decreased FAS protein and gene expression. However, ARID1A loss did not affect FAS promotor openness. Instead, we identified and experimentally validated a previously unknown co-transcriptional complex consisting of RUNX3 and ETS1 that regulates FAS expression, and ARID1A loss leads to reduced RUNX3 promotor openness and gene expression. The reduced FAS levels induced by ARID1A loss rendered lymphoma cells resistant to both soluble and T cell membrane-anchored FASLG-induced apoptosis, and significantly diminished CAR T cell killing in functional experiments. In summary, we have identified a functionally and clinically relevant mechanism how FL cells can escape FAS-dependent immune surveillance, which may also impact the efficacy of T cell-based therapies, including CAR T cells.

细胞死亡受体FAS及其配体(FASLG)在生发中心(GC)反应中对B细胞的选择起着至关重要的作用。不能通过FAS消除潜在有害的B细胞可导致淋巴细胞增殖和B细胞恶性肿瘤的发展。滤泡性淋巴瘤(FL)的典型形式是一种典型的gc源性B细胞恶性肿瘤,其特征是t(14;18)(q32;q21)IGH::BCL2易位和抗凋亡BCL2过表达。其他改变被证明与临床相关,包括ARID1A突变。ARID1A是调节DNA可及性(“开放性”)的SWI/SNF核小体重塑复合体的一部分。然而,ARID1A突变导致FL发病的机制尚不清楚。我们分析了151例初始诊断为晚期疾病的FL活检患者,发现ARID1A突变是复发性的,主要是破坏性的,总频率为18%。此外,我们观察到ARID1A突变体FL在FL肿瘤细胞群中FAS蛋白表达显著降低。在bcl2易位淋巴瘤细胞中的功能实验表明,ARID1A直接参与FAS的调控,ARID1A缺失导致FAS蛋白和基因表达下降。然而,ARID1A缺失并不影响FAS启动子的开放程度。相反,我们鉴定并实验验证了一个由RUNX3和ETS1组成的先前未知的共转录复合物,该复合物调节FAS表达,ARID1A缺失导致RUNX3启动子开放度降低和基因表达降低。在功能实验中,ARID1A缺失导致的FAS水平降低使淋巴瘤细胞对可溶性和T细胞膜锚定的fassg诱导的凋亡产生抗性,并显著减少CAR - T细胞的杀伤。总之,我们已经确定了FL细胞如何逃避fas依赖的免疫监视的功能和临床相关机制,这也可能影响T细胞疗法(包括CAR - T细胞)的疗效。
{"title":"ARID1A mutations protect follicular lymphoma from FAS-dependent immune surveillance by reducing RUNX3/ETS1-driven FAS-expression","authors":"Martina Antoniolli, Maria Solovey, Johannes Adrian Hildebrand, Tabea Freyholdt, Carolin Dorothea Strobl, Deepak Bararia, William David Keay, Louisa Adolph, Michael Heide, Verena Passerini, Lis Winter, Lucas Wange, Wolfgang Enard, Susanne Thieme, Helmut Blum, Martina Rudelius, Julia Mergner, Christina Ludwig, Sebastian Bultmann, Marc Schmidt-Supprian, Heinrich Leonhardt, Marion Subklewe, Michael von Bergwelt-Baildon, Maria Colomé-Tatché, Oliver Weigert","doi":"10.1038/s41418-025-01445-3","DOIUrl":"https://doi.org/10.1038/s41418-025-01445-3","url":null,"abstract":"<p>The cell death receptor FAS and its ligand (FASLG) play crucial roles in the selection of B cells during the germinal center (GC) reaction. Failure to eliminate potentially harmful B cells via FAS can lead to lymphoproliferation and the development of B cell malignancies. The classic form of follicular lymphoma (FL) is a prototypic GC-derived B cell malignancy, characterized by the t(14;18)(q32;q21)IGH::<i>BCL2</i> translocation and overexpression of antiapoptotic BCL2. Additional alterations were shown to be clinically relevant, including mutations in <i>ARID1A</i>. ARID1A is part of the SWI/SNF nucleosome remodeling complex that regulates DNA accessibility (“openness”). However, the mechanism how <i>ARID1A</i> mutations contribute to FL pathogenesis remains unclear. We analyzed 151 FL biopsies of patients with advanced-stage disease at initial diagnosis and found that <i>ARID1A</i> mutations were recurrent and mainly disruptive, with an overall frequency of 18%. Additionally, we observed that <i>ARID1A</i> mutant FL showed significantly lower FAS protein expression in the FL tumor cell population. Functional experiments in BCL2-translocated lymphoma cells demonstrated that ARID1A is directly involved in the regulation of FAS, and ARID1A loss leads to decreased FAS protein and gene expression. However, ARID1A loss did not affect <i>FAS</i> promotor openness. Instead, we identified and experimentally validated a previously unknown co-transcriptional complex consisting of RUNX3 and ETS1 that regulates <i>FAS</i> expression, and ARID1A loss leads to reduced <i>RUNX3</i> promotor openness and gene expression. The reduced FAS levels induced by ARID1A loss rendered lymphoma cells resistant to both soluble and T cell membrane-anchored FASLG-induced apoptosis, and significantly diminished CAR T cell killing in functional experiments. In summary, we have identified a functionally and clinically relevant mechanism how FL cells can escape FAS-dependent immune surveillance, which may also impact the efficacy of T cell-based therapies, including CAR T cells.</p><figure></figure>","PeriodicalId":9731,"journal":{"name":"Cell Death and Differentiation","volume":"84 1","pages":""},"PeriodicalIF":12.4,"publicationDate":"2025-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143020613","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Epigenetic regulation of HOXA2 expression affects tumor progression and predicts breast cancer patient survival HOXA2 表达的表观遗传调控影响肿瘤进展并预测乳腺癌患者的生存期
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-20 DOI: 10.1038/s41418-024-01430-2
Fatima Domenica Elisa De Palma, Jonathan G. Pol, Vincent Carbonnier, Sarah Adriana Scuderi, Deborah Mannino, Léa Montégut, Allan Sauvat, Maria Perez-Lanzon, Elisabet Uribe-Carretero, Mario Guarracino, Ilaria Granata, Raffaele Calogero, Valentina Del Monaco, Donatella Montanaro, Gautier Stoll, Gerardo Botti, Massimiliano D’Aiuto, Alfonso Baldi, Valeria D’Argenio, Roderic Guigó, René Rezsohazy, Guido Kroemer, Maria Chiara Maiuri, Francesco Salvatore

Accumulating evidence suggests that genetic and epigenetic biomarkers hold potential for enhancing the early detection and monitoring of breast cancer (BC). Epigenetic alterations of the Homeobox A2 (HOXA2) gene have recently garnered significant attention in the clinical management of various malignancies. However, the precise role of HOXA2 in breast tumorigenesis has remained elusive. To address this point, we conducted high-throughput RNA sequencing and DNA methylation array studies on laser-microdissected human BC samples, paired with normal tissue samples. Additionally, we performed comprehensive in silico analyses using large public datasets: TCGA and METABRIC. The diagnostic performance of HOXA2 was calculated by means of receiver operator characteristic curves. Its prognostic significance was assessed through immunohistochemical studies and Kaplan-Meier Plotter database interrogation. Moreover, we explored the function of HOXA2 and its role in breast carcinogenesis through in silico, in vitro, and in vivo investigations. Our work revealed significant hypermethylation and downregulation of HOXA2 in human BC tissues. Low HOXA2 expression correlated with increased BC aggressiveness and unfavorable patient survival outcomes. Suppression of HOXA2 expression significantly heightened cell proliferation, migration, and invasion in BC cells, and promoted tumor growth in mice. Conversely, transgenic HOXA2 overexpression suppressed these cellular processes and promoted apoptosis of cancer cells. Interestingly, a strategy of pharmacological demethylation successfully restored HOXA2 expression in malignant cells, reducing their neoplastic characteristics. Bioinformatics analyses, corroborated by in vitro experimentations, unveiled a novel implication of HOXA2 in the lipid metabolism of BC. Specifically, depletion of HOXA2 leaded to a concomitantly decreased expression of PPARγ and its target CIDEC, a master regulator of lipid droplet (LD) accumulation, thereby resulting in reduced LD abundance in BC cells. In summary, our study identifies HOXA2 as a novel prognosis-relevant tumor suppressor in the mammary gland.

越来越多的证据表明,遗传和表观遗传生物标志物具有增强乳腺癌早期检测和监测的潜力。Homeobox A2 (HOXA2)基因的表观遗传改变最近在各种恶性肿瘤的临床治疗中引起了极大的关注。然而,HOXA2在乳腺肿瘤发生中的确切作用仍然难以捉摸。为了解决这一问题,我们对激光显微解剖的人类BC样本进行了高通量RNA测序和DNA甲基化阵列研究,并与正常组织样本配对。此外,我们使用大型公共数据集(TCGA和METABRIC)进行了全面的计算机分析。通过接收算子特征曲线计算HOXA2的诊断效能。通过免疫组织化学研究和Kaplan-Meier Plotter数据库查询评估其预后意义。此外,我们通过计算机、体外和体内研究探讨了HOXA2的功能及其在乳腺癌发生中的作用。我们的工作揭示了人类BC组织中HOXA2的显著高甲基化和下调。低HOXA2表达与BC侵袭性增加和不利的患者生存结果相关。抑制HOXA2表达可显著提高BC细胞的增殖、迁移和侵袭,促进小鼠肿瘤生长。相反,转基因HOXA2过表达抑制这些细胞过程,促进癌细胞凋亡。有趣的是,药理学去甲基化策略成功地恢复了恶性细胞中HOXA2的表达,减少了它们的肿瘤特征。体外实验证实了生物信息学分析,揭示了HOXA2在BC脂质代谢中的新含义。具体来说,HOXA2的缺失导致PPARγ及其靶蛋白CIDEC(脂滴(LD)积累的主要调节因子)的表达减少,从而导致BC细胞中LD的丰富度降低。总之,我们的研究确定了HOXA2在乳腺中是一种新的与预后相关的肿瘤抑制因子。
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引用次数: 0
USP25 directly interacts with and deubiquitinates PPARα to increase PPARα stability in hepatocytes and attenuate high-fat diet-induced MASLD in mice USP25直接与PPARα相互作用并去泛素化PPARα以增加肝细胞中PPARα的稳定性并减轻小鼠高脂肪饮食诱导的MASLD
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-18 DOI: 10.1038/s41418-025-01444-4
Leiming Jin, Weiwei Zhu, Xiang Hu, Lin Ye, Shuaijie Lou, Qianhui Zhang, Minxiu Wang, Bozhi Ye, Julian Min, Yi Wang, Lijiang Huang, Wu Luo, Guang Liang

Recent studies have implicated altered ubiquitination/de-ubiquitination pathway in the pathogenesis of metabolic dysfunction-associated steatotic liver disease (MASLD). Here, we investigated the potential role of a deubiquitinase, ubiquitin-specific peptidase 25 (USP25), in MASLD. Analysis of mRNA profiling data showed that both human and mouse MASLD are associated with reduced expression of USP25 in hepatocytes. Usp25 deficiency exacerbated HFD-induced liver lipid accumulation and MASLD in mice. Rescue experiments with USP25 induction in hepatocytes protected mice against HFD-induced MASLD. Through comprehensive transcriptome sequence and pulldown-LC-MS/MS analysis, we identified that peroxisome proliferator-activated receptor α (PPARα) is involved in USP25’s protective actions and may be the substrate protein of USP25. Cell-based experiments show that USP25 interacts with PPARα directly via its USP domain and the histidine at position 608 of USP25 exerts deubiquitination to increase protein stability by removing the K48 ubiquitin chain at PPARα’s lysine at position 429. USP25 reduces palmitate (PA)-induced lipid accumulation in hepatocytes via increasing PPARα. Finally, we show that the protective effects of Usp25 induction are nullified in Ppara-deficient mice with HFD. In summary, this study presents a new USP25-PPARα axis in hepatocytes and highlights a novel function of USP25 in MASLD, suggesting that it may be targeted to combat the disease.

最近的研究表明,泛素化/去泛素化途径的改变与代谢功能障碍相关性脂肪性肝病(MASLD)的发病机制有关。在此,我们研究了去泛素化酶--泛素特异性肽酶 25(USP25)在 MASLD 中的潜在作用。对 mRNA 图谱数据的分析表明,人类和小鼠 MASLD 都与 USP25 在肝细胞中的表达减少有关。Usp25 缺乏会加剧 HFD 诱导的小鼠肝脏脂质积累和 MASLD。在肝细胞中诱导 USP25 的拯救实验可保护小鼠免受 HFD 诱导的 MASLD 的影响。通过全面的转录组序列和 pulldown-LC-MS/MS 分析,我们发现过氧化物酶体增殖激活受体 α (PPARα) 参与了 USP25 的保护作用,并且可能是 USP25 的底物蛋白。基于细胞的实验表明,USP25 直接通过其 USP 结构域与 PPARα 相互作用,USP25 位于 608 位的组氨酸通过去除 PPARα 位于 429 位的赖氨酸上的 K48 泛素链,发挥去泛素化作用,从而提高蛋白质的稳定性。USP25 可通过增加 PPARα 减少棕榈酸酯(PA)诱导的肝细胞脂质积累。最后,我们发现,在 Ppara 缺失的小鼠中,Usp25 诱导的保护作用在高密度脂蛋白膳食中被抵消。总之,本研究提出了肝细胞中一种新的 USP25-PPARα 轴,并强调了 USP25 在 MASLD 中的一种新功能,这表明可以将其作为抗击该疾病的靶点。
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引用次数: 0
Small protein ERSP encoded by LINC02870 promotes triple negative breast cancer progression via IRE1α/XBP1s activation LINC02870编码的小蛋白ERSP通过IRE1α/XBP1s激活促进三阴性乳腺癌进展
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-11 DOI: 10.1038/s41418-025-01443-5
Xiaolu Wang, Qianqian Wang, Hong Wang, Guodi Cai, Yana An, Peiqing Liu, Huihao Zhou, Hong-Wu Chen, Shufeng Ji, Jiantao Ye, Junjian Wang

Clinical treatment options for triple-negative breast cancer (TNBC) are currently limited to chemotherapy because of a lack of effective therapeutic targets. Recent evidence suggests that long noncoding RNAs (lncRNAs) encode bioactive peptides or proteins, thereby playing noncanonical yet significant roles in regulating cellular processes. However, the potential of lncRNA-translated products in cancer progression remains largely unknown. In this study, we identified a previously undocumented small protein encoded by the lncRNA LINC02870. This protein is localized at the endoplasmic reticulum (ER) and participates in ER stress, thus, we named it the endoplasmic reticulum stress protein (ERSP). ERSP was highly expressed in TNBC tissues, and elevated LINC02870 content was correlated with poor prognosis in TNBC patients. Loss of ERSP inhibited TNBC growth and metastasis both in vitro and in vivo. The pro-oncogenic effects of ERSP could be attributed to its selective activation of the IRE1α/XBP1s branch. ERSP enhances the unfolded protein response (UPR) by interacting with XBP1s, facilitating the nuclear accumulation of XBP1s, thereby promoting the expression of ER stress-related genes. These findings highlight the regulatory role of the lncRNA-encoded protein ERSP in ER stress and suggest that it is a potential therapeutic target for TNBC.

由于缺乏有效的治疗靶点,目前三阴性乳腺癌(TNBC)的临床治疗选择仅限于化疗。最近的证据表明,长链非编码rna (lncRNAs)编码生物活性肽或蛋白质,从而在调节细胞过程中发挥非规范但重要的作用。然而,lncrna翻译产物在癌症进展中的潜力在很大程度上仍然未知。在这项研究中,我们鉴定了一个以前未记载的由lncRNA LINC02870编码的小蛋白。该蛋白定位于内质网并参与内质网应激,因此我们将其命名为内质网应激蛋白(ERSP)。ERSP在TNBC组织中高表达,LINC02870含量升高与TNBC患者预后不良相关。在体外和体内,ERSP的缺失抑制了TNBC的生长和转移。ERSP的促癌作用可能归因于其选择性激活IRE1α/XBP1s分支。ERSP通过与XBP1s相互作用增强未折叠蛋白反应(UPR),促进XBP1s的核积累,从而促进内质网应激相关基因的表达。这些发现强调了lncrna编码蛋白ERSP在内质网应激中的调节作用,并表明它是TNBC的潜在治疗靶点。
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引用次数: 0
Mechanisms of regulated cell death during plant infection by the rice blast fungus Magnaporthe oryzae 稻瘟病菌侵染植物过程中调控细胞死亡的机制
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-10 DOI: 10.1038/s41418-024-01442-y
Matthew R. Wengler, Nicholas J. Talbot

Fungi are the most important group of plant pathogens, responsible for many of the world’s most devastating crop diseases. One of the reasons they are such successful pathogens is because several fungi have evolved the capacity to breach the tough outer cuticle of plants using specialized infection structures called appressoria. This is exemplified by the filamentous ascomycete fungus Magnaporthe oryzae, causal agent of rice blast, one of the most serious diseases affecting rice cultivation globally. M. oryzae develops a pressurized dome-shaped appressorium that uses mechanical force to rupture the rice leaf cuticle. Appressoria form in response to the hydrophobic leaf surface, which requires the Pmk1 MAP kinase signalling pathway, coupled to a series of cell-cycle checkpoints that are necessary for regulated cell death of the fungal conidium and development of a functionally competent appressorium. Conidial cell death requires autophagy, which occurs within each cell of the spore, and is regulated by components of the cargo-independent autophagy pathway. This results in trafficking of the contents of all three cells to the incipient appressorium, which develops enormous turgor of up to 8.0 MPa, due to glycerol accumulation, and differentiates a thickened, melanin-lined cell wall. The appressorium then re-polarizes, re-orienting the actin and microtubule cytoskeleton to enable development of a penetration peg in a perpendicular orientation, that ruptures the leaf surface using mechanical force. Re-polarization requires septin GTPases which form a ring structure at the base of the appressorium, which delineates the point of plant infection, and acts as a scaffold for actin re-localization, enhances cortical rigidity, and forms a lateral diffusion barrier to focus polarity determinants that regulate penetration peg formation. Here we review the mechanism of regulated cell death in M. oryzae, which requires autophagy but may also involve ferroptosis. We critically evaluate the role of regulated cell death in appressorium morphogenesis and examine how it is initiated and regulated, both temporally and spatially, during plant infection. We then use this synopsis to present a testable model for control of regulated cell death during appressorium-dependent plant infection by the blast fungus.

真菌是最重要的植物病原体,是世界上许多最具破坏性的作物病害的罪魁祸首。它们成为如此成功的病原体的原因之一是,一些真菌已经进化出了一种能力,可以利用一种叫做附着胞的特殊感染结构破坏植物坚硬的外角质层。丝状子囊菌真菌Magnaporthe oryzae就是一个例子,它是稻瘟病的病原体,稻瘟病是影响全球水稻种植的最严重疾病之一。m.o ryzae发展出一个加压的圆顶状附着胞,利用机械力使水稻叶片角质层破裂。附着胞的形成是对疏水叶片表面的响应,这需要Pmk1 MAP激酶信号通路,以及一系列细胞周期检查点,这些检查点对于真菌分生孢子的调节细胞死亡和功能性附着胞的发育是必要的。分生孢子细胞的死亡需要自噬,这一过程发生在孢子的每个细胞内,并受不依赖于货物的自噬途径的组成部分的调节。这导致所有三种细胞的内容物都被运输到早期的附着胞,由于甘油的积累,附着胞产生高达8.0 MPa的巨大膨胀,并分化出增厚的黑色素细胞壁。附着胞重新极化,使肌动蛋白和微管细胞骨架重新定向,从而形成垂直方向的穿透栓,利用机械力使叶片表面破裂。再极化需要septin gtpase,它在附着胞底部形成环状结构,描绘植物感染点,并作为肌动蛋白重新定位的支架,增强皮质刚性,形成横向扩散屏障,聚焦调节穿透peg形成的极性决定因素。在这里,我们回顾了m.o ryzae调节细胞死亡的机制,这需要自噬,但也可能涉及铁死亡。我们批判性地评估了调控细胞死亡在附着胞形态发生中的作用,并研究了在植物感染期间它是如何在时间和空间上启动和调节的。然后,我们使用这个概要来提出一个可测试的模型,用于控制在附着胞依赖的植物感染过程中受调控的细胞死亡。
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引用次数: 0
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Cell Death and Differentiation
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