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Fructose: the sweet(er) side of the Warburg effect 果糖:沃伯格效应的甜蜜一面
IF 13.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-05 DOI: 10.1038/s41418-024-01395-2
Christian Frezza
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引用次数: 0
DNA damage-inducible transcript 3 positively regulates RIPK1-mediated necroptosis DNA 损伤诱导转录本 3 对 RIPK1 介导的坏死有正向调节作用
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-03 DOI: 10.1038/s41418-024-01385-4
Rui Ni, Ting Cao, Xiaoyun Ji, Angel Peng, Zhuxu Zhang, Guo-Chang Fan, Peter Stathopulos, Subrata Chakrabarti, Zhaoliang Su, Tianqing Peng

DNA damage-inducible transcript 3 (DDIT3) is a well-known transcription factor that regulates the expression of apoptosis-related genes for promoting apoptosis during endoplasmic reticulum stress. Here, we report an unrecognized role of DDIT3 in facilitating necroptosis. DDIT3 directly binds and competitively prevents the p38 MAPK-MK2 interaction and thereby blocking MK2 activation while stimulating p38 MAPK activation. This blockage of MK2 activation initially prevents RIPK1 phosphorylation at Ser320 (inactivation), subsequently relieving its suppression of RIPK1 activation. Consequently, p38 MAPK facilitates RIPK1 phosphorylation at Ser166 (activation) through DDIT3 phosphorylation-related mechanisms, leading to necroptosis. Mechanistically, a 10-amino acid segment (Glu19-Val28) within DDIT3’s N-terminus is identified to account for its pro-necroptotic function. In vivo studies demonstrate that forced expression of DDIT3 induces necroptosis, whereas deletion of DDIT3 alleviates necroptosis in mouse hearts under stress. These findings shed light on a novel regulatory mechanism by which DDIT3 promotes RIPK1 activation and subsequent necroptosis.

DNA 损伤诱导转录本 3(DDIT3)是一种众所周知的转录因子,它能调节凋亡相关基因的表达,从而在内质网应激时促进细胞凋亡。在这里,我们报告了 DDIT3 在促进坏死中的一个未被认识的作用。DDIT3 直接结合并竞争性阻止 p38 MAPK-MK2 相互作用,从而阻断 MK2 的激活,同时刺激 p38 MAPK 的激活。这种对 MK2 激活的阻断最初会阻止 RIPK1 在 Ser320 处的磷酸化(失活),随后解除对 RIPK1 激活的抑制。因此,p38 MAPK 通过 DDIT3 磷酸化相关机制促进 RIPK1 在 Ser166 处的磷酸化(激活),从而导致坏死。从机理上讲,DDIT3 N 端的一个 10 氨基酸片段(Glu19-Val28)被确定为其促坏死功能的原因。体内研究表明,强迫表达 DDIT3 会诱导小鼠心脏坏死,而缺失 DDIT3 则会缓解小鼠心脏在应激状态下的坏死。这些发现揭示了一种新的调控机制,即 DDIT3 通过这种机制促进 RIPK1 的活化和随后的坏死。
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引用次数: 0
Integrated stress response plasticity governs normal cell adaptation to chronic stress via the PP2A-TFE3-ATF4 pathway 综合应激反应可塑性通过 PP2A-TFE3-ATF4 通路调控正常细胞对慢性应激的适应性
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-30 DOI: 10.1038/s41418-024-01378-3
Rita A. Avelar, Riya Gupta, Grace Carvette, Felipe da Veiga Leprevost, Medhasri Jasti, Jose Colina, Jessica Teitel, Alexey I. Nesvizhskii, Caitlin M. O’Connor, Maria Hatzoglou, Shirish Shenolikar, Peter Arvan, Goutham Narla, Analisa DiFeo

The integrated stress response (ISR) regulates cell fate during conditions of stress by leveraging the cell’s capacity to endure sustainable and efficient adaptive stress responses. Protein phosphatase 2A (PP2A) activity modulation has been shown to be successful in achieving both therapeutic efficacy and safety across various cancer models. However, the molecular mechanisms driving its selective antitumor effects remain unclear. Here, we show for the first time that ISR plasticity relies on PP2A activation to regulate drug response and dictate cellular survival under conditions of chronic stress. We demonstrate that genetic and chemical modulation of the PP2A leads to chronic proteolytic stress and triggers an ISR to dictate whether the cell lives or dies. More specifically, we uncovered that the PP2A-TFE3-ATF4 pathway governs ISR cell plasticity during endoplasmic reticular and cellular stress independent of the unfolded protein response. We further show that normal cells reprogram their genetic signatures to undergo ISR-mediated adaptation and homeostatic recovery thereby avoiding toxicity following PP2A-mediated stress. Conversely, oncogenic specific cytotoxicity induced by chemical modulation of PP2A is achieved by activating chronic and irreversible ISR in cancer cells. Our findings propose that a differential response to chemical modulation of PP2A is determined by intrinsic ISR plasticity, providing a novel biological vulnerability to selectively induce cancer cell death and improve targeted therapeutic efficacy.

综合应激反应(ISR)通过利用细胞承受可持续和高效适应性应激反应的能力,在应激条件下调节细胞的命运。在各种癌症模型中,调节蛋白磷酸酶 2A(PP2A)的活性已被证明能成功实现疗效和安全性。然而,驱动其选择性抗肿瘤作用的分子机制仍不清楚。在这里,我们首次发现 ISR 的可塑性依赖于 PP2A 的激活来调节药物反应,并决定细胞在慢性应激条件下的存活。我们证明,对 PP2A 的遗传和化学调控会导致慢性蛋白水解应激,并触发 ISR 来决定细胞的生死。更具体地说,我们发现 PP2A-TFE3-ATF4 通路在内质网和细胞应激期间支配 ISR 细胞的可塑性,而与未折叠蛋白反应无关。我们进一步发现,正常细胞会对其基因特征进行重新编程,以进行由 ISR 介导的适应和平衡恢复,从而避免在 PP2A 介导的应激后产生毒性。相反,通过化学调节 PP2A 诱导的致癌特异性细胞毒性是通过激活癌细胞中长期和不可逆的 ISR 实现的。我们的研究结果表明,对 PP2A 化学调节的不同反应是由内在 ISR 可塑性决定的,这为选择性诱导癌细胞死亡和提高靶向治疗效果提供了一种新的生物脆弱性。
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引用次数: 0
Neuronal LAMP2A-mediated reduction of adenylyl cyclases induces acute neurodegenerative responses and neuroinflammation after ischemic stroke 神经元 LAMP2A 介导的腺苷酸环化酶减少诱导缺血性中风后的急性神经退行性反应和神经炎症
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-28 DOI: 10.1038/s41418-024-01389-0
Dingfang Shi, Yunhao Bai, Ruiling Long, Jing Xia, Wenxuan Xu, Dongshen Qin, Xuejun Yang, Ming Ding, Xiao-Yu Hou

Lysosomes regulate cellular metabolism to maintain cell survival, but the mechanisms whereby they determine neuronal cell fate after acute metabolic stress are unknown. Neuron-enriched lysosomal membrane protein LAMP2A is involved in selective chaperone-mediated autophagy and exosome loading. This study demonstrates that abnormalities in the neuronal LAMP2A-lysosomal pathway cause neurological deficits following ischemic stroke and that this is an early inducer of the PANoptosis-like molecular pathway and neuroinflammation, simultaneously inducing upregulation of FADD, RIPK3, and MLKL after ischemia. Quantitative proteomic and pharmacological analysis showed that after acute metabolic stress, the neuronal LAMP2A pathway induced acute synaptic degeneration and PANoptosis-like responses involving downregulation of protein kinase A (PKA) signaling. LAMP2A directed post-stroke lysosomal degradation of adenylyl cyclases (ADCY), including ADCY1 and ADCY3 in cortical neurons. Post-stroke treatment with cAMP mimetic or ADCY activator salvaged cortical neurons from PANoptosis-like responses and neuroinflammation, suggesting that the neuronal ADCY–cAMP–PKA axis is an upstream arrester of the pathophysiological process following an ischemic stroke. This study demonstrates that the neuronal LAMP2A-lysosmal pathway drives intricate acute neurodegenerative and neuroinflammatory responses after brain metabolic stress by downregulating the ADCY–PKA signaling cascade, and highlights the therapeutic potential of PKA signal inducers for improving stroke outcomes.

溶酶体调节细胞新陈代谢以维持细胞存活,但它们在急性代谢应激后决定神经细胞命运的机制尚不清楚。神经元富集的溶酶体膜蛋白 LAMP2A 参与了选择性伴侣介导的自噬和外泌体装载。本研究表明,神经元LAMP2A-溶酶体通路的异常会导致缺血性脑卒中后的神经功能缺损,而且这是缺血后PAN凋亡样分子通路和神经炎症的早期诱导因素,同时诱导FADD、RIPK3和MLKL的上调。定量蛋白质组学和药理学分析表明,在急性代谢应激后,神经元 LAMP2A 通路诱导急性突触变性和 PANoptosis 样反应,其中涉及蛋白激酶 A(PKA)信号的下调。LAMP2A 引导了中风后大脑皮质神经元中腺苷酸环化酶(ADCY)(包括 ADCY1 和 ADCY3)的溶酶体降解。中风后使用 cAMP 模拟物或 ADCY 激活剂可挽救皮质神经元免受 PANoptosis-like 反应和神经炎症的影响,这表明神经元 ADCY-cAMP-PKA 轴是缺血性中风后病理生理过程的上游阻断器。这项研究表明,神经元 LAMP2A-lysosmal 通路通过下调 ADCY-PKA 信号级联,驱动脑代谢应激后错综复杂的急性神经退行性变和神经炎症反应,并强调了 PKA 信号诱导剂在改善中风预后方面的治疗潜力。
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引用次数: 0
NF-κB regulated expression of A20 controls IKK dependent repression of RIPK1 induced cell death in activated T cells 受 NF-κB 调控的 A20 表达可控制 IKK 依赖性抑制活化 T 细胞中 RIPK1 诱导的细胞死亡
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-26 DOI: 10.1038/s41418-024-01383-6
By Scott Layzell, Alessandro Barbarulo, Geert van Loo, Rudi Beyaert, Benedict Seddon

IKK signalling is essential for survival of thymocytes by repressing RIPK1 induced cell death rather than its canonical function of activating NF-κB. The role of IKK signalling in activated T cells is unclear. To investigate this, we analysed activation of IKK2 deficient T cells. While TCR triggering was normal, proliferation and expansion was profoundly impaired. This was not due to defective cell cycle progression, rather dividing T cells became sensitised to TNF induced cell death, since inhibition of RIPK1 kinase activity rescued cell survival. Gene expression analysis of activated IKK2 deficient T cells revealed defective expression of Tnfaip3, that encodes A20, a negative regulator of NF-κB. To test whether A20 expression was required to protect IKK2 deficient T cells from cell death, we generated mice with T cells lacking both A20 and IKK2. Doing this resulted in near complete loss of peripheral T cells, in contrast to mice lacking one or other gene. Strikingly, this phenotype was completely reversed by inactivation of RIPK1 kinase activity in vivo. Together, our data show that IKK signalling in activated T cells protects against RIPK1 dependent death, both by direct phosphorylation of RIPK1 and through NF-κB mediated induction of A20, that we identify for the first time as a key modulator of RIPK1 activity in T cells.

IKK 信号通过抑制 RIPK1 诱导的细胞死亡,而非其激活 NF-κB 的典型功能,对胸腺细胞的存活至关重要。IKK 信号在活化 T 细胞中的作用尚不清楚。为了研究这个问题,我们分析了 IKK2 缺失的 T 细胞的活化情况。虽然 TCR 触发正常,但增殖和扩增却严重受损。这并不是由于细胞周期进展的缺陷,而是分裂的 T 细胞对 TNF 诱导的细胞死亡变得敏感,因为抑制 RIPK1 激酶的活性可以挽救细胞的存活。对缺失 IKK2 的活化 T 细胞进行的基因表达分析表明,编码 A20 的 Tnfaip3 的表达存在缺陷,而 A20 是 NF-κB 的负调控因子。为了测试 A20 的表达是否是保护 IKK2 缺乏的 T 细胞免于细胞死亡的必要条件,我们培育了同时缺乏 A20 和 IKK2 的 T 细胞小鼠。这样做的结果是外周 T 细胞几乎完全丧失,这与同时缺乏其中一个基因的小鼠形成了鲜明对比。令人吃惊的是,这种表型在体内通过使 RIPK1 激酶活性失活而完全逆转。总之,我们的数据表明,活化 T 细胞中的 IKK 信号通过 RIPK1 的直接磷酸化和 NF-κB 介导的 A20 的诱导,可防止 RIPK1 依赖性死亡。
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引用次数: 0
The role(s) of NF-Y in development and differentiation NF-Y 在发育和分化中的作用
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-26 DOI: 10.1038/s41418-024-01388-1
Diletta Dolfini, Carol Imbriano, Roberto Mantovani

NF-Y is a conserved sequence-specific trimeric Transcription Factor -TF- binding to the CCAAT element. We review here the role(s) in development, from pre-implantation embryo to terminally differentiated tissues, by rationalizing and commenting on genetic, genomic, epigenetic and biochemical studies. This effort brings to light the impact of NF-YA isoforms on stemness and differentiation, as well as binding to distal vs promoter proximal sites and connections with selected TFs.

NF-Y 是一种保守的序列特异性三聚体转录因子 -TF- 与 CCAAT 元件结合。我们在此通过对遗传学、基因组学、表观遗传学和生物化学研究的梳理和评论,回顾了 NF-Y 在从胚胎植入前到终末分化组织的发育过程中的作用。这项工作揭示了 NF-YA 异构体对干性和分化的影响,以及与远端和启动子近端位点的结合以及与选定 TF 的联系。
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引用次数: 0
Retraction Note: Hypoxia-induced autophagy of stellate cells inhibits expression and secretion of lumican into microenvironment of pancreatic ductal adenocarcinoma 撤稿说明:低氧诱导的星状细胞自噬抑制了胰腺导管腺癌微环境中lumican的表达和分泌。
IF 13.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-25 DOI: 10.1038/s41418-024-01387-2
Xinqun Li, Yeonju Lee, Ya’an Kang, Bingbing Dai, Mayrim Rios Perez, Michael Pratt, Eugene J. Koay, Michael Kim, Rolf A. Brekken, Jason B. Fleming
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引用次数: 0
ARHGAP26 deficiency drives the oocyte aneuploidy and early embryonic development failure. ARHGAP26 缺乏会导致卵母细胞非整倍体和早期胚胎发育失败。
IF 13.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-23 DOI: 10.1038/s41418-024-01384-5
Sen Li, Yu Zhang, Ruiying Yuan, Shuai Zhu, Jie Bai, Yilong Miao, Xianghong Ou, Qiang Wang, Bo Xiong

Aneuploidy, the presence of a chromosomal anomaly, is a major cause of spontaneous abortions and recurrent pregnancy loss in humans. However, the underlying molecular mechanisms still remain poorly understood. Here, we report that ARHGAP26, a putative tumor suppressor gene, is a newly identified regulator of oocyte quality to maintain mitochondrial integrity and chromosome euploidy, thus ensuring normal embryonic development and fertility. Taking advantage of knockout mouse model, we revealed that genetic ablation of Arhgap26 caused the oocyte death at GV stage due to the mitochondrial dysfunction-induced ROS accumulation. Lack of Arhgap26 also impaired both in vitro and in vivo maturation of survived oocytes which results in maturation arrest and aneuploidy, and consequently leading to early embryonic development defects and subfertility. These observations were further verified by transcriptome analysis. Mechanistically, we discovered that Arhgap26 interacted with Cofilin1 to maintain the mitochondrial integrity by regulating Drp1 dynamics, and restoration of Arhgap26 protein level recovered the quality of Arhgap26-null oocytes. Importantly, we found an ARHGAP26 mutation in a patient with history of recurrent miscarriage by chromosomal microarray analysis. Altogether, our findings uncover a novel function of ARHGAP26 in the oocyte quality control and prevention of aneuploidy and provide a potential treatment strategy for infertile women caused by ARHGAP26 mutation.

非整倍体(染色体异常)是导致人类自然流产和复发性妊娠流产的主要原因。然而,人们对其潜在的分子机制仍然知之甚少。在这里,我们报告了一个推定的肿瘤抑制基因 ARHGAP26,它是一个新发现的卵母细胞质量调控因子,能维持线粒体的完整性和染色体的非整倍体,从而确保胚胎的正常发育和生育能力。利用基因敲除小鼠模型,我们发现 Arhgap26 基因消减会导致卵母细胞在 GV 阶段因线粒体功能障碍引起的 ROS 积累而死亡。缺失 Arhgap26 还会影响存活卵母细胞的体外和体内成熟,导致成熟停滞和非整倍体,从而导致早期胚胎发育缺陷和不育。转录组分析进一步验证了这些观察结果。从机理上讲,我们发现 Arhgap26 与 Cofilin1 相互作用,通过调节 Drp1 的动态来维持线粒体的完整性,恢复 Arhgap26 蛋白水平可恢复 Arhgap26 缺失卵母细胞的质量。重要的是,我们通过染色体微阵列分析在一位有复发性流产病史的患者体内发现了 ARHGAP26 突变。总之,我们的研究结果揭示了 ARHGAP26 在卵母细胞质量控制和预防非整倍体方面的新功能,并为 ARHGAP26 突变导致的不孕妇女提供了一种潜在的治疗策略。
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引用次数: 0
The IDH1-R132H mutation aggravates cisplatin-induced acute kidney injury by promoting ferroptosis through disrupting NDUFA1 and FSP1 interaction IDH1-R132H 突变通过破坏 NDUFA1 和 FSP1 的相互作用促进铁变态反应,从而加重顺铂诱导的急性肾损伤
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-22 DOI: 10.1038/s41418-024-01381-8
Kunmei Lai, Zhimin Chen, Siyi Lin, Keng Ye, Ying Yuan, Guoping Li, Yankun Song, Huabin Ma, Tak W. Mak, Yanfang Xu

The IDH1-R132H mutation is implicated in the development of various tumors. Whether cisplatin, a common chemotherapeutic agent, induces more significant renal toxicity in individuals with the IDH1-R132H mutation remains unclear. In this study, we observed that the IDH1-R132H mutation exacerbates mitochondrial lipid peroxidation and dysfunction in renal tubules, rendering the kidneys more susceptible to cisplatin-induced ferroptosis. The IDH1-R132H mutation increases methylation of the Ndufa1 promoter, thereby suppressing NDUFA1 transcription and translation. This suppression disrupts NDUFA1’s interaction with FSP1, reducing its resistance to cisplatin-induced tubular epithelial cell death. As a consequence, ROS accumulates, lipid peroxidation occurs, and ferroptosis is triggered, thereby promoting acute kidney injury. In summary, this study elucidates a novel mechanism underlying cisplatin-induced nephrotoxicity and provides valuable insights for the development of personalized treatment strategies for tumor patients carrying the IDH1-R132H mutation.

IDH1-R132H 突变与多种肿瘤的发病有关。IDH1-R132H突变是否会导致顺铂(一种常见的化疗药物)对IDH1-R132H突变者的肾脏产生更严重的毒性,目前仍不清楚。在这项研究中,我们观察到 IDH1-R132H 突变会加剧线粒体脂质过氧化和肾小管功能障碍,使肾脏更容易受到顺铂诱导的铁中毒的影响。IDH1-R132H 突变增加了 Ndufa1 启动子的甲基化,从而抑制了 NDUFA1 的转录和翻译。这种抑制破坏了 NDUFA1 与 FSP1 的相互作用,降低了 NDUFA1 对顺铂诱导的肾小管上皮细胞死亡的抵抗力。因此,ROS 积累,脂质过氧化发生,铁变态反应被触发,从而促进急性肾损伤。总之,本研究阐明了顺铂诱导肾毒性的新机制,为携带 IDH1-R132H 突变的肿瘤患者制定个性化治疗策略提供了宝贵的见解。
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引用次数: 0
The long non-coding RNA ROSALIND protects the mitochondrial translational machinery from oxidative damage 长非编码 RNA ROSALIND 保护线粒体翻译机制免受氧化损伤
IF 12.4 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-18 DOI: 10.1038/s41418-024-01377-4
Vicky Katopodi, Alessandro Marino, Nikoleta Pateraki, Yvessa Verheyden, Sonia Cinque, Elena Lara Jimenez, Sara Adnane, Ewout Demesmaeker, Alice Scomparin, Rita Derua, Elisabetta Groaz, Eleonora Leucci

Upregulation of mitochondrial respiration coupled with high ROS-scavenging capacity is a characteristic shared by drug-tolerant cells in several cancers. As translational fidelity is essential for cell fitness, protection of the mitochondrial and cytosolic ribosomes from oxidative damage is pivotal. While mechanisms for recognising and repairing such damage exist in the cytoplasm, the corresponding process in the mitochondria remains unclear.By performing Ascorbate PEroXidase (APEX)-proximity ligation assay directed to the mitochondrial matrix followed by isolation and sequencing of RNA associated to mitochondrial proteins, we identified the nuclear-encoded lncRNA ROSALIND as an interacting partner of ribosomes. ROSALIND is upregulated in recurrent tumours and its expression can discriminate between responders and non-responders to immune checkpoint blockade in a melanoma cohort of patients. Featuring an unusually high G content, ROSALIND serves as a substrate for oxidation. Consequently, inhibiting ROSALIND leads to an increase in ROS and protein oxidation, resulting in severe mitochondrial respiration defects. This, in turn, impairs melanoma cell viability and increases immunogenicity both in vitro and ex vivo in preclinical humanised cancer models. These findings underscore the role of ROSALIND as a novel ROS buffering system, safeguarding mitochondrial translation from oxidative stress, and shed light on potential therapeutic strategies for overcoming cancer therapy resistance.

线粒体呼吸的上调与高 ROS 清除能力是几种癌症耐药细胞的共同特征。由于翻译保真度对细胞健康至关重要,因此保护线粒体和细胞质核糖体免受氧化损伤至关重要。通过进行针对线粒体基质的抗坏血酸聚氧乙烯醚酶(APEX)-邻近连接测定,然后分离与线粒体蛋白相关的 RNA 并进行测序,我们确定了核编码的 lncRNA ROSALIND 是核糖体的相互作用伙伴。ROSALIND在复发性肿瘤中上调,它的表达可以区分黑色素瘤患者队列中对免疫检查点阻断有反应和无反应者。ROSALIND 的 G 含量异常高,是一种氧化底物。因此,抑制 ROSALIND 会导致 ROS 和蛋白质氧化增加,造成严重的线粒体呼吸缺陷。这反过来又损害了黑色素瘤细胞的活力,并增加了临床前人源化癌症模型体外和体内的免疫原性。这些发现强调了 ROSALIND 作为一种新型 ROS 缓冲系统的作用,它能保护线粒体翻译免受氧化应激,并揭示了克服癌症治疗耐药性的潜在治疗策略。
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引用次数: 0
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Cell Death and Differentiation
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