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The utility of modified RENAL nephrometry score in predicting the perioperative outcomes following open partial nephrectomy. 改良肾测量评分在预测开放式部分肾切除术围手术期预后中的应用。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-27 DOI: 10.14715/cmb/2024.70.11.19
Shakhawan Hama Amin Said, Goran Friad, Mzhda Sahib Jaafar, Lusan Abdulhameed Arkawazi, Mohammed Fahad Raheem, Ismaeel Aghaways, Mohammed I M Gubari

The RENAL nephrometry score (RNS) is a standardized approach for grading the complexity of renal masses, although it does not have a strong correlation with the perioperative outcomes of open partial nephrectomy. To address these issues, a modified RENAL has been proposed.  The study's goal is to determine the usefulness of a modified RENAL nephrometry score in predicting perioperative outcomes after open partial nephrectomy. This interventional multicentric trial included 47 adult patients with T1N0M0 renal masses of 7 cm or less, which were appropriate for open partial nephrectomy. Salah et al. presented a modified R.E.N.A.L classification system, which was used to assess renal complexity. Demographics, anthropometrics, prior medical history, renal mass features, histological diagnosis, and perioperative data were all collected for examination. Logistic regression and receiver operator characteristic curve analysis were used to predict perioperative problems. The patients' average age was 52.0 ± 13.1 years, with a male-to-female ratio of 1.24:1. The modified R.E.N.A.L score averaged 9.6 ± 1.8. Perioperative problems occurred in 42.6% of cases. The moderate complexity group experienced a lengthier hospital stay (2.7 ± 0.6 days) than the mild complexity group (2.3 ± 0.5 days, p = 0.008). The R.E.N.A.L. score was identified as an independent predictor of perioperative complications (OR: 1.48; 95% CI: 1.03-2.26, p = 0.046), with an acceptable cut-off point of 8.7 (AUC = 0.68). The modified RENAL is an important tool for identifying renal malignancies based on their anatomic characteristics, which aids in the prediction of perioperative complication rates.

肾肾测量评分(RNS)是一种标准化的方法,用于分级肾脏肿块的复杂性,尽管它与开放式部分肾切除术的围手术期结果没有很强的相关性。为了解决这些问题,我们提出了一个修改后的肾移植。该研究的目的是确定改良肾肾测量评分在预测开放式部分肾切除术后围手术期预后方面的有效性。这项介入性多中心试验纳入了47例T1N0M0肾肿块(7cm或以下)的成年患者,这些患者适合进行开放式部分肾切除术。Salah等人提出了一种改进的R.E.N.A.L分类系统,用于评估肾脏复杂性。收集人口统计学、人体测量学、既往病史、肾脏肿块特征、组织学诊断和围手术期资料进行检查。采用Logistic回归和接受者操作者特征曲线分析预测围手术期问题。患者平均年龄52.0±13.1岁,男女比例为1.24:1。改良R.E.N.A.L评分平均9.6±1.8分。42.6%的病例出现围手术期问题。中度并发症组住院时间(2.7±0.6 d)长于轻度并发症组(2.3±0.5 d, p = 0.008)。R.E.N.A.L.评分被确定为围手术期并发症的独立预测因子(OR: 1.48;95% CI: 1.03-2.26, p = 0.046),可接受截断点为8.7 (AUC = 0.68)。改良的肾造影是鉴别肾恶性肿瘤解剖特征的重要工具,有助于预测围手术期并发症的发生率。
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引用次数: 0
EGCG inhibits the oxidative damage induced by TiO2-NPs in human colon cell lines. EGCG抑制TiO2-NPs诱导的人结肠细胞系氧化损伤。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-27 DOI: 10.14715/cmb/2024.70.11.12
Han Wang, Xiang Li, Yundong Xu, Yaping Tian, Qidan Li, Yongzhen Zhang, Xu Wang, Juan Ni

To assess the protective effects of (-)-Epigallocatechin-3-gallate (EGCG), a natural antioxidant, against cellular oxidative damage induced by titanium dioxide nanoparticles (TiO2-NPs), Human Colon cells NCM460 and Colon Cancer cells SW620 were selected for this study. The cells were divided into three groups: control group, TiO2-NPs (80 μg/mL) exposure group, and EGCG (20 μmol/L)+TiO2-NPs (80 μg/mL) co-exposure group. The study evaluated the precipitation rate of TiO2-NPs influenced by EGCG in a cell-free system. It also measured the levels of ROS, MDA, and total antioxidant capacity in the cells of each group. The uptake of TiO2-NPs by the cells was assessed using the SSCe/SSC0 ratio, and genome instability was evaluated. The results demonstrated that the addition of 20 μmol/L EGCG to the system resulted in greater sedimentation of TiO2-NPs compared to TiO2-NPs alone (P<0.05). The SSCe/SSC0 values in the co-exposure group were significantly lower than those in the TiO2-NPs alone group (P<0.001). TiO2-NPs induced a higher oxidative stress index in the cells (P<0.001), while the co-exposure group exhibited a lower REDOX index (P<0.001). The combination of EGCG and TiO2-NPs did not significantly affect genome instability in either cell line. Importantly, EGCG showed a certain inhibitory effect on oxidative damage to colon cells induced by TiO2-NPs, with no significant difference observed between normal and cancer cells in terms of this protective effect. Conducting a comprehensive investigation into the interaction mechanism between EGCG and TiO2-NPs is crucial for establishing a scientific foundation that can guide the optimal utilization of the antioxidant properties of EGCG to mitigate the toxicity associated with TiO2-NPs.

为了评估天然抗氧化剂(-)-表没食子儿茶素-3-没食子酸酯(EGCG)对二氧化钛纳米颗粒(TiO2-NPs)诱导的细胞氧化损伤的保护作用,本研究选择了人结肠癌细胞NCM460和结肠癌细胞SW620。将细胞分为对照组、TiO2-NPs (80 μmol/ mL)暴露组和EGCG (20 μmol/L)+TiO2-NPs (80 μmol/ mL)共暴露组。本研究评估了在无细胞系统中受EGCG影响的TiO2-NPs的沉淀速率。同时测定各组细胞中ROS、MDA和总抗氧化能力的水平。使用SSCe/SSC0比值评估细胞对TiO2-NPs的摄取,并评估基因组不稳定性。结果表明,与单独添加TiO2-NPs相比,添加20 μmol/L EGCG可使TiO2-NPs的沉降量增加(P
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引用次数: 0
Assessment of decreased ovarian reserve and systemic inflammatory markers. 评估卵巢储备减少和全身炎症标志物。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-27 DOI: 10.14715/cmb/2024.70.11.21
Seyedeh Shahed Shoarishoar, Roya KaboodMehri, Fereshteh Fakor, Zahra Rafiei Sorouri, Mandana Mansour-Ghanaei, Roya Faraji Darkhaneh, Seyedeh Fatemeh Dalil Heirati, Maryam Karimian, Zahra Heidarpour, Forozan Milani, Fereshtehsadat Jalali

Given the significance of investigating ovarian reserve in infertile women, the limitations of existing diagnostic tests, and the absence of similar studies in this area, the present study aimed to examine the relationship between systemic inflammatory markers in patients with diminished ovarian reserve referred to the fertility clinic of Alzahra Hospital in Rasht in the year 2023. This cross-sectional analytical study was conducted on 174 patients referred to the Alzahra Hospital fertility clinic in Rasht. Patients were divided into two categories based on their serum levels of anti-Müllerian hormone (AMH):AMH >1.1 (ng/ml) and AMH < 1.1(ng/ml). Demographic and laboratory variables, including age, BMI, parity, neutrophil-to-lymphocyte ratio (NLR), platelet-to-lymphocyte ratio (PLR), red cell distribution width-to-platelet ratio (RPR), and follicle-stimulating hormone (FSH), were compared between the two groups. Significant difference between the two study groups regarding age and BMI, with the mean age and BMI of patients in the group with normal ovarian reserve being lower than those in the group with poor ovarian reserve. There was a significant difference in FSH levels, the group with poor ovarian response had higher FSH levels. Age and FSH were identified as independent predictive variables associated with diminished ovarian reserve in patients. According to the present study, a significant association between diminished ovarian reserve and inflammatory markers (NLR, PLR, and RPR) was not observed. However, FSH levels were significantly higher in the Diminished Ovarian Reserve (DOR) group. Furthermore, a meaningful correlation was only found between diminished ovarian reserve and age.

考虑到调查不孕妇女卵巢储备的重要性,现有诊断测试的局限性,以及该领域缺乏类似研究,本研究旨在研究2023年到拉什特Alzahra医院生育诊所就诊的卵巢储备减少患者全身炎症标志物之间的关系。这项横断面分析研究是在拉什特的Alzahra医院生育诊所进行的174例患者。根据患者血清抗勒氏杆菌激素(AMH)水平分为两组:AMH >1.1 (ng/ml)和AMH < 1.1(ng/ml)。比较两组的人口统计学和实验室变量,包括年龄、BMI、胎次、中性粒细胞与淋巴细胞比值(NLR)、血小板与淋巴细胞比值(PLR)、红细胞分布宽度与血小板比值(RPR)和促卵泡激素(FSH)。两组年龄和BMI差异有统计学意义,卵巢储备功能正常组患者的平均年龄和BMI低于卵巢储备功能差组患者的平均年龄和BMI。FSH水平有显著性差异,卵巢反应较差组FSH水平较高。年龄和FSH被确定为与患者卵巢储备减少相关的独立预测变量。根据目前的研究,卵巢储备减少和炎症标志物(NLR、PLR和RPR)之间没有明显的关联。然而,FSH水平在卵巢储备功能减退(DOR)组明显更高。此外,仅发现卵巢储备功能减退与年龄之间存在有意义的相关性。
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引用次数: 0
Evaluation of HOTAIR, HOXD8, HOXD9, HOXD11 gene expression levels in Turkish patients with acute and chronic myeloid leukemia: A single center experience. 土耳其急慢性髓性白血病患者HOTAIR、HOXD8、HOXD9、HOXD11基因表达水平的评估:单中心经验
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-27 DOI: 10.14715/cmb/2024.70.11.5
Esma Saraymen, Yakut Erdem, Hilal Akalın, Nazife Taşçıoğlu, Berkay Saraymen, Serhat Çelik, Yeşim Özdemir, Leylagül Kaynar, Mustafa Çetin, Yusuf Özkul

Homeobox (HOX) transcript antisense RNA (HOTAIR) and HOX genes are reported to be more expressed in various cancers in humans in recent studies. The role of HOTAIR and HOXD genes in acute myeloid leukemia (AML) and chronic myeloid leukemia (CML) is not well known. In this study, expression levels of HOXD8, HOXD9 and HOXD11 from HOXD gene family and HOTAIR were determined from peripheral blood samples of 30 AML and 30 CML patients and 20 healthy volunteers by quantitative Real Time PCR. We determined that the expression levels of HOXD9 and HOXD11 in the AML patients were significantly lower than the control group (p<0.001 and p=0.002, respectively). There was no significant difference in the expression levels of HOTAIR and HOXD8 when compared to the control group. In the CML patients there was a significant increase in the expression level of HOTAIR when compared to the control group (p=0.002). The expression levels of HOXD9 and HOXD11 were found to be significantly lower than the control group (p<0.001). Our study showed that HOTAIR may not be a biomarker in the diagnosis and is not significantly correlated with the clinicopathological prognostic characteristics of AML. Additionally; it can be said that HOTAIR is oncogenic by suppressing the expression of HOXD9 and HOXD11 but not HOXD8 in CML patients. The expression profiles of HOTAIR may be a potential biomarker in the diagnosis of CML patients in predicting and monitoring drug resistance.

同源盒(HOX)转录反义RNA (HOTAIR)和HOX基因在人类各种癌症中表达较多。HOTAIR和HOXD基因在急性髓性白血病(AML)和慢性髓性白血病(CML)中的作用尚不清楚。本研究采用实时荧光定量PCR检测了30例AML和30例CML患者及20例健康志愿者外周血HOXD基因家族HOXD8、HOXD9、HOXD11及HOTAIR基因的表达水平。我们发现,HOXD9和HOXD11在AML患者中的表达水平明显低于对照组(p
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引用次数: 0
Antiproliferative effects of hazelnut cell culture extract on the different cancer cell lines. 榛子细胞培养提取物对不同癌细胞系的抗增殖作用。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-27 DOI: 10.14715/cmb/2024.70.11.13
Sule Ari, Idil Cetin, Ahmet Dogan, Mehmet Rifki Topcul

The increasing incidence of cancer has necessitated the discovery of novel anticancer compound sources. The presence of taxanes in hazelnut cell cultures has promoted new promising pharmacotherapeutic applications. The antiproliferative properties of hazelnut (Corylus avellana cv. 'Kalınkara') cell culture extracts against different human cancer cell lines (HeLa, MCF-7, MDA-MB-231, A549) with Beas-2B as control were evaluated. The cytotoxicity of C. avellana culture extract (5 µM, 10 µM, and 20 µM) on all cell lines was evaluated with xCELLigence Real Time Cell Analysis System. Mitotic activity (450-655 nm), BrdU activity (450-550 nm) and caspase 3,7 activity (490-520 nm) were analyzed with a spectrophotometer through 24, 48, and 72 hours. Based on the values obtained from the xCELLigence Cell Analysis System, a 10 µM concentration of the culture extract was assigned as the IC50 dose. Culture extracts at 10 µM enhanced the reduction in the proliferation of all cancer cells assayed. The highest decrease in mitotic (59.32%) and BrdU (53.77%) activity was observed in A549 lung cancer cells. However, caspase 3,7 activity (35.08%) was the highest in aggressive MDA-MB-231 breast cancer cells. The culture extracts decreased the viability of A549 cells to a greater extent than that of MCF-7 and MDA-MB-231 breast, and HeLa cervical cancer cells. C. avellana cv. 'Kalınkara' cell culture extracts have potential use in the treatment of lung and, to a lesser extent, breast and cervical cancers.

随着癌症发病率的增加,有必要发现新的抗癌化合物来源。榛子细胞培养物中紫杉烷的存在促进了新的有前景的药物治疗应用。榛子(榛果)的抗增殖特性。‘Kalınkara’)细胞培养提取物对不同人类癌细胞系(HeLa, MCF-7, MDA-MB-231, A549)的作用,以Beas-2B为对照。采用xCELLigence实时细胞分析系统(Real Time cell Analysis System)检测5µM、10µM和20µM的牛皮草培养液对所有细胞系的细胞毒性。用分光光度计分析有丝分裂活性(450-655 nm)、BrdU活性(450-550 nm)和caspase 3,7活性(490-520 nm),时间分别为24、48和72 h。根据xCELLigence细胞分析系统获得的数值,将10µM浓度的培养提取物指定为IC50剂量。10µM的培养提取物增强了所有癌细胞的增殖。在A549肺癌细胞中,有丝分裂活性和BrdU活性分别下降59.32%和53.77%。然而,在侵袭性MDA-MB-231乳腺癌细胞中,caspase 3,7活性最高(35.08%)。与MCF-7和MDA-MB-231乳腺癌和HeLa宫颈癌细胞相比,培养提取物对A549细胞活力的降低程度更大。c.a vellana cv。“Kalınkara”细胞培养提取物在治疗肺癌方面有潜在的用途,在较小程度上也可用于治疗乳腺癌和宫颈癌。
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引用次数: 0
Short-term effects of retinoic acid on the proliferation of SH-SY5Y cells via mitophagy and apoptosis. 维甲酸对SH-SY5Y细胞自噬和凋亡的短期影响。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-27 DOI: 10.14715/cmb/2024.70.11.9
Dilara Aydin, Çağrı Öner, Senem Aslan Öztürk, Ertuğrul Çolak

Neuroblastoma shows the highest lethality in childhood and has poor prognosis at high grade. Our objectives included determining how retinoic acid affected the growth of neuroblastoma cells and the relationship between chemicals unique to neurons and cell death processes like apoptosis and mitophagy. The 50% inhibitory concentration of retinoic acid on SH-SY5Y neuroblastoma cells was determined at the 24th, 48th and 72nd hours. At the optimal concentration of retinoic acid on SH-SY5Y cells, Ki-67, cytochrome C, HIF-1α, Parkin, α-synuclein, DJ-1 and tyrosine β- hydroxylase gene expressions were determined by using RT-PCR. Tyrosine β-hydroxylase protein expression was assessed by ELISA. The optimal time and concentration for retinoic acid in SH-SY5Y cells was 10 μM at the 24th hour. The decreased gene expressions of Ki-67, α-synuclein, DJ-1 and tyrosine β-hydroxylase were observed while Cyt C, HIF-1α and Parkin gene expressions were upregulated (p<0.001). Tyrosine β-hydroxylase protein expression increased at the 24th and 72nd hours although it decreased at the 48th hour (p<0.001). Retinoic acid has short-term effect on the proliferation of SH-SY5Y neuroblastoma cells. It was observed that short-term retinoic acid treatment improved neurodegeneration parameters, but it decreased the proliferation by inducing mitophagy and apoptosis of SH-SY5Y neuroblastoma cells.

神经母细胞瘤在儿童期死亡率最高,高分级预后较差。我们的目标包括确定维甲酸如何影响神经母细胞瘤细胞的生长,以及神经元特有的化学物质与细胞凋亡和有丝分裂等细胞死亡过程之间的关系。测定维甲酸对SH-SY5Y神经母细胞瘤细胞的50%抑制浓度,时间分别为24、48、72小时。在最佳维甲酸浓度下,RT-PCR检测SH-SY5Y细胞Ki-67、细胞色素C、HIF-1α、Parkin、α-synuclein、DJ-1和酪氨酸β-羟化酶基因的表达。ELISA法检测酪氨酸β-羟化酶蛋白表达。维甲酸在SH-SY5Y细胞中的最佳作用时间和浓度为10 μM。Ki-67、α-突触核蛋白、DJ-1和酪氨酸β-羟化酶基因表达降低,而Cyt C、HIF-1α和Parkin基因表达上调(p
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引用次数: 0
The impact of different occlusal guard materials on Candida albicans proliferation in the oral cavity. 不同牙合防护材料对口腔白色念珠菌增殖的影响。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-27 DOI: 10.14715/cmb/2024.70.11.18
Shukriya Hussein Habib, Nabeel Seryoka Hanna Martani, Jawhar Rasheed Mohammed

Candida albicans is an opportunistic fungal pathogen. It's a dimorphic fungus with hyphal form that can penetrate and proliferate the oral mucosa. Occlusal guard materials come into direct contact with the oral mucosa and saliva when worn for extended periods, the occlusal guard acts as a reservoir for C. albicans that imposes adverse oral or systemic effects, particularly in medically compromised patients. A randomized controlled trial was conducted among forty volunteers with a history of bruxism. The volunteers were divided into four groups, with each group assigned to wear occlusal guards made of one of the following materials: (Polyethylene Terephthalate-Glycol, Polymethyl methacrylate resin, Ethyl phenylphosphinate 3D printing resin and Chrome-Cobalt Alloy). The study samples were collected after one month, with an additional three months spent assessing C. albicans. A descriptive statistical analysis was performed and compared between groups with different time intervals. The statistical analysis revealed that C. albicans proliferation increased after three months of wearing the occlusal guards, however, the results showed non-significant differences (P = 0.914). Furthermore, the comparative analysis demonstrated that the highest proliferation of C. albicans was found with Polymethyl methacrylate and the least with Chrome-Cobalt Alloy. Within the limitations of this study, it was concluded that reducing wearing time will reduce pathogenic infection by C. albicans, and the occlusal guard with the chrome-cobalt alloy material was better than the other materials in this aspect.

白色念珠菌是一种机会性真菌病原体。它是一种具有菌丝形式的二态真菌,可以穿透和增殖口腔粘膜。当长时间佩戴时,咬合防护材料与口腔黏膜和唾液直接接触,咬合防护作为白色念珠菌的蓄积库,施加不利的口腔或全身影响,特别是在医学上有缺陷的患者中。在40名有磨牙史的志愿者中进行了一项随机对照试验。志愿者被分为四组,每组被分配佩戴由以下材料之一制成的咬合护套:(聚对苯二甲酸乙二醇酯树脂、聚甲基丙烯酸甲酯树脂、苯基膦酸乙酯3D打印树脂和铬钴合金)。研究样本在一个月后收集,另外三个月用于评估白色念珠菌。对不同时间间隔的组间进行描述性统计分析和比较。统计分析显示,白色念珠菌在佩戴牙套3个月后增殖增加,但差异无统计学意义(P = 0.914)。此外,对比分析表明,聚甲基丙烯酸甲酯对白色念珠菌的增殖作用最大,铬钴合金对白色念珠菌的增殖作用最小。在本研究的限制范围内,我们得出结论:减少佩戴时间可以减少白色念珠菌的致病性感染,铬钴合金材料的咬合罩在这方面优于其他材料。
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引用次数: 0
Anti-wrinkle activity of the ethanol extract of Aronia melanocarpa for development of the cosmeceutical ingredients. 黑质野樱草乙醇提取物抗皱活性研究,为药妆原料的开发提供依据。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-27 DOI: 10.14715/cmb/2024.70.11.10
See-Hyoung Park

Despite the abundance of natural biological resources in Aronia melanocarpa, there is still insufficient research specifically exploring the potential for developing cosmeceutical compositions utilizing this plant. To develop the ingredient with the cosmeceutical function, the anti-wrinkle effect of the ethanol extract of A. melanocarpa was investigated. The ethanol extract was prepared from the dried A. melanocarpa. DPPH radical scavenging activity was significantly increased by the ethanol extract of A. melanocarpa. Cell viability on CCD986Sk human fibroblast was not affected by the ethanol extract of A. melanocarpa. Moreover, the ethanol extract of A. melanocarpa demonstrated inhibition of both collagenase and elastase enzymes. Analysis through ELISA and western blotting revealed an elevation in collagen expression levels in CCD986Sk human fibroblasts treated with ethanol extract. Additionally, the extract induced migration and invasion in HaCaT human keratinocytes, potentially associated with the activation of tight junctions. These results offer insights for the development of innovative cosmeceutical formulations utilizing A. melanocarpa extract.

尽管黑桫椤具有丰富的天然生物资源,但目前尚无专门研究利用该植物开发药妆成分的潜力。为了开发具有药妆功能的成分,研究了黑栎醇提物的抗皱作用。以干燥的黑栎为原料制备乙醇提取物。乙醇提取物对DPPH自由基的清除作用明显增强。黑桃醇提物对CCD986Sk人成纤维细胞的细胞活力无影响。此外,黑栎醇提物对胶原酶和弹性酶均有抑制作用。ELISA和western blotting分析显示,乙醇提取物处理的CCD986Sk人成纤维细胞胶原蛋白表达水平升高。此外,提取物诱导HaCaT人角质形成细胞的迁移和侵袭,可能与紧密连接的激活有关。这些结果为利用黑桫树提取物开发创新药妆配方提供了见解。
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引用次数: 0
Network-based meta-analysis and confirmation of genes ATP1A2, FXYD1, and ADCY3 associated with cAMP signaling in breast tumors compared to corresponding normal marginal tissues. 基于网络的meta分析和确认与乳腺肿瘤cAMP信号相关的基因ATP1A2、FXYD1和ADCY3与相应的正常边缘组织的比较。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-27 DOI: 10.14715/cmb/2024.70.11.3
Zahra Torki, Davood Ghavi, Zahra Foruzandeh, Fatemeh Zeinali Sehrig, Solmaz Hashemi, Mohammad Reza Alivand, Majid Pornour

Breast cancer (BC) is a global health concern with a growing prevalence. Since BC is a heterogeneous cancer, transcriptome analyzes were carried out on breast tumor tissues relative to their corresponding normal tissues in order to identify gene expression signatures and perform meta-analysis. Five expression profiling by array data sets from breast tumor tissues and non-tumor neighboring tissues were retrieved following a search in the GEO database (GSE70947, GSE70905, GSE10780, GSE29044, and GSE42568). Meta-analysis of gene expression using the Network Analyst tool identified common differentially expressed genes and biological pathways in all data sets. Then, the DEGs were analyzed through PPI network construction, gene ontology, and pathway analysis. The detected hub genes underwent Kaplan-Meier (KM) plotter and UALCAN validation. Finally, Real-time PCR analysis was used on BC patients' samples to determine mRNA levels of cAMP signaling pathway members ATP1A2, FXYD1, and ADCY3. Breast tumor tissues showed 710 differentially expressed genes (DEGs), with 392 overexpressed and 318 underexpressed, compared to normal marginal tissues. On the EnrichR library, GO, and KEGG pathway analyses were performed on the DEGs list. Progesterone-mediated oocyte maturation and the NF-kappa B signaling system were upregulated DEGs' top deregulated signaling pathways. In contrast, pathways related to cancer and the cAMP signaling pathway were the most enriched terms for down-regulated genes. Next, Real-time PCR quantification of cAMP signaling cascade members ATP1A2, FXYD1, and ADCY3 was performed on 50 BC tumoral and non-tumoral tissues for validation. Results of meta-analyzed array data sets revealed DEGs representing BC gene signatures, and cAMP signaling pathway members as effective factors in BC. The results of our real-time PCR expression level determination for ATP1A2, FXYD1, and ADCY3 in breast tumor tissues relative to the normal margins contradicted our bioinformatics investigations, which found increased levels for these genes. Of these, only ATP1A2's expression levels were statistically significant. This study focused on identifying gene expression signatures that provide an invaluable source of evidence for BC-related underlying mechanisms to provide new therapeutic targets and biomarkers.

乳腺癌(BC)是一个全球性的健康问题,发病率越来越高。由于BC是一种异质性癌症,我们对乳腺肿瘤组织与其对应的正常组织进行转录组分析,以确定基因表达特征并进行meta分析。在GEO数据库(GSE70947, GSE70905, GSE10780, GSE29044和GSE42568)中检索后,获得了来自乳腺肿瘤组织和非肿瘤邻近组织的5个阵列数据集的表达谱分析。使用网络分析工具对基因表达进行荟萃分析,确定了所有数据集中常见的差异表达基因和生物学途径。然后,通过PPI网络构建、基因本体和通路分析对deg进行分析。检测到的枢纽基因进行Kaplan-Meier (KM)绘图仪和UALCAN验证。最后,对BC患者样本进行Real-time PCR分析,测定cAMP信号通路成员ATP1A2、FXYD1和ADCY3的mRNA水平。与正常边缘组织相比,乳腺肿瘤组织有710个差异表达基因(DEGs),其中392个过表达,318个低表达。在enrichment库中,对DEGs列表进行GO和KEGG通路分析。黄体酮介导的卵母细胞成熟和nf - κ B信号系统是DEGs最重要的信号通路。相比之下,与癌症相关的途径和cAMP信号通路是下调基因最丰富的术语。接下来,在50例BC肿瘤和非肿瘤组织中对cAMP信号级联成员ATP1A2、FXYD1和ADCY3进行Real-time PCR定量验证。荟萃分析阵列数据集的结果显示,deg代表BC基因特征,cAMP信号通路成员是BC的有效因子。我们实时PCR检测的乳腺肿瘤组织中相对于正常边缘的ATP1A2、FXYD1和ADCY3的表达水平与我们的生物信息学研究结果相一致,后者发现这些基因的表达水平升高。其中,只有ATP1A2的表达水平有统计学意义。本研究的重点是识别基因表达特征,为bc相关的潜在机制提供宝贵的证据来源,从而提供新的治疗靶点和生物标志物。
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引用次数: 0
Protective role of vitamin B6 on some histological changes in the liver and kidneys and measure some indicators of oxidation balance in male rats. 维生素B6对雄性大鼠肝脏和肾脏组织学变化的保护作用及氧化平衡指标的测定。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-27 DOI: 10.14715/cmb/2024.70.11.23
Loay H Ali, Sara Hameed Rajab, Eman Naji Saleh

This study aimed to evaluate the therapeutic effects of B6 in rats experimentally intoxicated by benzopyrene. Twenty-eight Male Sprague Dawley (white Swiss) rats weighing 170-210 g and 3-4 months old were utilized in this examination. Rats were divided into 4 control groups (G1), B[a]P 2 pmol/μL (G2), B6 only once per 2 days for a full month at 1000 mcg (15 dose per month) (G3), B6 + B[a]P (G4). The results showed an increase in the level of MDA and a significant decrease in the level of GSH in the second group compared to the negative control group, while no significant differences appeared in the third group, while a significant decrease in the level of MDA and a significant increase in the level of GSH were observed in the fourth group when compared with The second group. Hepatic and renal tissues were taken for histopathological study. The results showed that liver and kidney of G1 and G3 exhibit normal architecture. Liver of G2 revealed blood congestion in certain sinusoids and atrophied hepatocytes, there was also hyperplasia of Kupffer cells in the pockets of blood sinusoids, while renal tissues showed inflammatory cell infiltration, mesangial cell hyperplasia, and blood vessel congestion and bleeding. In contrast liver and kidney tissues in G4 showed mild lesion after B6 treatment. In conclusion, Pyredoxin (B6) can alleviate the hepatic and renal tissues damaged caused by benzopyrene.

本研究旨在评价B6对苯并芘中毒大鼠的治疗作用。实验选用体重170 ~ 210 g、3 ~ 4月龄雄性Sprague Dawley大鼠28只。将大鼠分为4个对照组(G1)、B[a]P 2 pmol/μL (G2)、B6每2天1次,给药1000 mcg(每月15剂)(G3)、B6 + B[a]P (G4)。结果显示,与阴性对照组相比,第二组MDA水平升高,GSH水平显著降低,而第三组无显著差异,而第四组与第二组相比,MDA水平显著降低,GSH水平显著升高。取肝、肾组织进行组织病理学检查。结果显示,G1、G3大鼠肝、肾结构正常。G2肝脏部分窦内充血,肝细胞萎缩,血窦袋内Kupffer细胞增生,肾组织炎症细胞浸润,系膜细胞增生,血管充血出血。B6治疗后G4肝、肾组织病变轻微。由此可见,Pyredoxin (B6)可减轻苯并芘对肝脏和肾脏组织的损害。
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