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Immune cells mediated the causal relationship between perturbational phenotyping of human blood cells and neuropathy pain: a two-sample and mediated mendelian randomized study. 免疫细胞介导的人类血细胞的扰动表型和神经性疼痛之间的因果关系:一个双样本和介导孟德尔随机研究。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-20 DOI: 10.14715/cmb/2025.71.2.17
Qingwen Chen, Tao Zhong, Jian Liu, Dongpeng Cai, Han Gao, Mubin Chen

Current research reveals a complex relationship between blood cells(BC) and neuropathic pain(NP), though the underlying biological mechanisms remain unclear. This study applies Mendelian randomization (MR) to investigate causal relationships between BC and three major types of NP: diabetic peripheral neuropathy(PDPN), postherpetic neuralgia(PHN), and trigeminal neuralgia(TN). We also explore the potential mediating role of immune cells in these associations. We employed a two-sample, two-step Mendelian randomization study using the inverse variance weighted method to investigate the causal effect of BC on three major types of NP, as well as the mediating role of immune cells in the association between BC and NP. Additionally, we utilized a two-step Mendelian randomization design to explore the mediating effect of immune cells. We identified 13 distinct blood cell phenotypes under various perturbation conditions that have a significant causal relationship with NP. Additionally, we discovered 127 immune cells that exhibit a notable causal connection with NP. Through Mendelian Randomization (MR) and two-step Mendelian Randomization analyses, we found the following results: Three blood cell phenotypes were associated with PDPN, three with PHN, and seven with TN, with platelet, red blood cell, monocyte, and neutrophil responses showing significant correlations with NP risks. Immune cell analyses revealed 36 phenotypes increasing and 31 decreasing PDPN risk, 16 increasing and 21 decreasing PHN risk, and 18 increasing and 13 decreasing TN risk, with HLA DR on DCs, PB/PC AC, and CD39+ CD4+ %T cell showing the strongest associations, respectively. Mediation analysis identified immune cells, such as CD39+ resting Treg and HLA DR+ CD4+ %lymphocyte, mediating PBC effects on NP risks. Sensitivity analyses confirmed no significant heterogeneity or pleiotropy, and reverse MR analyses found no reverse causal relationships. This study provides new evidence for the causal relationship between blood cell phenotypes and neuropathic pain and proposes immune factors with potential mediating effects. However, this finding needs to be further demonstrated by more extensive clinical studies.

目前的研究揭示了血细胞(BC)和神经性疼痛(NP)之间的复杂关系,尽管潜在的生物学机制尚不清楚。本研究应用孟德尔随机化(MR)研究BC与三种主要NP之间的因果关系:糖尿病周围神经病变(PDPN)、带状疱疹后神经痛(PHN)和三叉神经痛(TN)。我们还探讨了免疫细胞在这些关联中的潜在介导作用。我们采用双样本、两步孟德尔随机化研究,采用反方差加权法研究BC与三种主要NP的因果关系,以及免疫细胞在BC与NP之间的关联中的中介作用。此外,我们采用两步孟德尔随机化设计来探索免疫细胞的介导作用。我们在不同的扰动条件下鉴定了13种不同的血细胞表型,这些表型与NP有显著的因果关系。此外,我们发现127个免疫细胞与NP表现出显著的因果关系。通过孟德尔随机化(MR)和两步孟德尔随机化分析,我们发现以下结果:3种血细胞表型与PDPN相关,3种与PHN相关,7种与TN相关,血小板、红细胞、单核细胞和中性粒细胞反应与NP风险显著相关。免疫细胞分析显示,36种表型的PDPN风险增加,31种表型的PDPN风险减少,16种表型的PHN风险增加,21种表型的PHN风险减少,18种表型的TN风险增加,13种表型的TN风险减少,其中HLA DR对dc、PB/PC AC和CD39+ CD4+ %T细胞的相关性最强。介导分析发现免疫细胞,如CD39+静息Treg和HLA DR+ CD4+ %淋巴细胞,介导PBC对NP风险的影响。敏感性分析证实没有显著的异质性或多效性,反向MR分析没有发现反向因果关系。本研究为血细胞表型与神经性疼痛之间的因果关系提供了新的证据,并提出了具有潜在介导作用的免疫因子。然而,这一发现需要更广泛的临床研究来进一步证明。
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引用次数: 0
Clinical and genetic spectrums of Pompe disease in Duhok city, Kurdistan region, Iraq. 伊拉克库尔德斯坦地区杜霍克市庞贝病的临床和遗传谱
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-02 DOI: 10.14715/cmb/2025.70.1.5
Azad A Haleem, Serdar G Pedawi, Bashar I Mohammed, Akrem Mohammad Atrushi, Nizar B Yahya, Narin Abass Mossa, Salar Mohammed Saadullah, Kiner I Hussein

Pompe disease which is glycogen storage disease type II, is an autosomal recessive lysosomal storage disorder where GAA gene mutations cause deficiency of acid alpha-glucosidase leading to deposition of glycogen in various tissues. Chromosome 17q25.2-25.3 is the location of GAA gene. This study aims to collect information on the Pompe disease symptoms' severity and genotypes of 18 children who represented all infant patients with Pompe disease until March 1st, 2024. For diagnosis tandem mass spectrometry and genetic study were used. Muscle strength was assessed by hand-held dynamometry. Cardiac assessment was by echocardiography and electrocardiography. The feeding and swallowing difficulties in the patients were addressed. Statistical analysis was used P<0.05 was considered significant. Fifty percent had normal mental development, 27.8% had delayed mile stones 55.6% had weakness of extremities, 50% had heart problems in the first month,38.8% had respiratory problems in the first month and 12(66.6%) had feeding difficulties. The level of the enzyme alpha-1,4 Glucosidase level was Zero in two patients 66.7% and was 0.1µmol/L/h in 33.3% of the alive patients while it was 0.1 µmol/L/h in 73.3% and 0.2 µmol/L/h in 13.3% of the dead with a significant correlation. The genetic mutations were   c. [258dupC]; [258dup] in 6 (33.3%) of the patients, c.258dup in 3(16.6%) and c.2237G>A in 11.1% of all the patients. Childhood Pompe disease course varies widely. It is important to consider Pompe disease in the differential diagnosis of patients with unexplained fatigue and weakness and cardiorespiratory involvement.

Pompe病是II型糖原贮积病,是一种常染色体隐性溶酶体贮积病,GAA基因突变引起酸性α -葡萄糖苷酶缺乏,导致糖原沉积在各组织中。染色体17q25.2-25.3是GAA基因的位置。本研究旨在收集截至2024年3月1日代表所有庞贝病婴儿患者的18名儿童的庞贝病症状严重程度和基因型信息。用于诊断的串联质谱和遗传研究。用手持式测力仪测定肌肉力量。通过超声心动图和心电图对心脏进行评估。解决了患者的进食和吞咽困难。统计分析11.1%的患者使用PA。儿童庞贝病的病程差别很大。在鉴别诊断有不明原因的疲劳、虚弱和心肺受累的病人时,考虑庞贝病是很重要的。
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引用次数: 0
Biochemical profiling and antioxidant evaluation of Martynia annua and Polygonum viviparum: investigating hepatoprotective properties against abiotic stress. 黄花martyna annua和蓼(Polygonum viviparum)的生化分析和抗氧化评价:研究抗非生物应激的保肝特性。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-02 DOI: 10.14715/cmb/2025.70.1.2
Umm E-Habiba, Zahid Habib Qureshi, Bakhtawar Farooq, Raheela Jabeen, Mahwish Batool Kazmi, Najma Qammar, Rafi Qamar, Hafiz Muhammad Rashad Javeed, Muhammad Shahzad, Mody Albalawi, Mohammed Ali Al-Duais, Hayam A Alwabsi, Ahmad El Askary, Mohamed M Zayed, Nermin I Rizk

The liver is the second largest organ in the body, playing a crucial role in maintaining homeostasis and regulating metabolism. However, the prevalence of liver diseases has been rising steadily due to an increase in both infectious and non-infectious factors. Medicinal plants offer a remarkable opportunity to enhance our healthcare system by addressing various diseases through their ability to control oxidative stress and support metabolic processes. This revision improves readability while retaining the original meaning. In the present study, purified methanol extracts of Martynia annua and Polygonum viviparum at different concentrations were used to explore the antioxidant and hepatoprotective potential against abiotic stress on liver cells.  Firstly total flavonoids and total phenolic contents of both plants were measured and then their antioxidant activities were determined through DPPH radical scavenging activity and FRAP assay. Moreover, bioactive compounds and in vitro hepatoprotective potential among these plants were determined through LC-MS and Liver Slice Culture assay respectively. In P. viviparum high amounts of TPC and TFC were observed with maximum antioxidant potential in terms of DPPH inhibition at 84% and high ferric-reducing ability at 240 mg/mL. The presence of different phytoconstituents like Myricetin, Gallic acid, Ferulic acid, Chlorogenic acid, Sweroside, Morroniside, Echonoside, Swertiamarin and Protocatechuic acid were confirmed in M. annua and P. viviparum in LC-MS study. The maximum hepatoprotective potential in terms of minimum cytotoxicity 6% and 9% were observed in M. annua and P. viviparum respectively. It was revealed that both plants have stunning hepatoprotective properties to prevent liver from toxicants and their related complications due to high antioxidant potential and active metabolites.

肝脏是人体第二大器官,在维持体内平衡和调节新陈代谢方面起着至关重要的作用。然而,由于传染性和非传染性因素的增加,肝脏疾病的患病率一直在稳步上升。药用植物通过其控制氧化应激和支持代谢过程的能力来解决各种疾病,为增强我们的医疗保健系统提供了一个非凡的机会。这个修订在保留原意的同时提高了可读性。本研究以不同浓度的黄花Martynia annua和蓼(Polygonum viviparum)纯化甲醇提取物为研究对象,探讨其对肝细胞抗氧化和抗非生物应激的保护作用。首先测定两种植物总黄酮和总酚含量,然后通过DPPH自由基清除活性和FRAP测定其抗氧化活性。并分别通过LC-MS和肝片培养法测定了这些植物的生物活性成分和体外保肝潜力。在疟原虫中,观察到大量的TPC和TFC具有最大的抗氧化潜力,对DPPH的抑制作用为84%,对铁的还原能力为240 mg/mL。通过LC-MS研究,证实了黄花蔷薇和viviparum中含有杨梅素、没食子酸、阿魏酸、绿原酸、獐牙菜苷、morronide、Echonoside、獐牙菜苦苷和原儿茶酸等不同的植物成分。以最小细胞毒性计,黄花蒿和viviparum分别具有最大的肝保护潜力(6%和9%)。研究表明,这两种植物都具有惊人的保护肝脏的特性,可以防止肝脏受到毒物及其相关并发症的侵害,因为它们具有高抗氧化潜力和活跃的代谢产物。
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引用次数: 0
Dendrimers as drug delivery vehicles: a comprehensive review. 树状大分子作为药物传递载体:综述。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-02 DOI: 10.14715/cmb/2025.70.1.1
Musa M Zorab, Amjad Mahmood Qadir, Azad Mohammed Aziz Ahmed

Dendrimers are chemical compounds that have functional groups on their surface and a hyperbranched structure. It is simple to promote the functionality of dendrimers and produce a variety of biocompatible products by altering their terminal groups. These materials have exceptional physicochemical characteristics that make them more beneficial in the administration of medications. They have a vigorous amount of potential as agents for nanomedicine applications because of their rare properties, which compose internal cavities, strong reactivity, globular form, solubility in water, and nanoscale size. They might also be synthesized easily. In-depth information about dendrimer composition and classifications, synthesis, and applications in nanomedicine, particularly drug delivery, is mentioned in this paper. Dendrimers are chiefly categorized by their functional groups, which permit for concise encapsulation of active compounds and structural imitatively of biomaterials. A rare property not often seen in other polymers serves to stabilize the surface of dendrimers to broaden their solubility in water. Dendritic molecules own a different variety of applications, such as dendrimers, dendrons, dendronized polymers, and hyperbranched polymers, which are organized based on their molecular weight. The role-play of dendrimers' is the capability to attach a broad range of chemical entities and their ability to shift pharmacokinetic and pharmacodynamic features through tailored drug delivery. To sum up, this study bolded how dendrimers' intricate structure and versatility make them excellent drug delivery vehicles since they may exactly modify their properties to reach special requirements. Drugs can be aimed at neuroinflammatory disorders and made more soluble and stable by dendrimers, which also deliver for a diversity of modes of delivery.  Additionally, they show attractive ability in gene transfection and sensor production, drawing near their potential for a difference of usages in industries including pesticide delivery and medicine. With the potential to send out gene therapy, medicine delivery, and other specialties of science and medicine, dendrimers are becoming a huge crucial in the pharmaceutical and medical industries through the next research and clinical investigations.

树状大分子是表面具有官能团和超支化结构的化合物。通过改变树状大分子的末端基团,可以很容易地提高其功能性并生产出各种生物相容性的产品。这些材料具有特殊的物理化学特性,使它们在药物管理中更有益。由于其罕见的性质,包括内部空腔、强反应性、球形、水溶性和纳米级尺寸,它们作为纳米药物的应用具有巨大的潜力。它们也很容易合成。深入的信息关于树状大分子的组成和分类,合成和应用在纳米医学,特别是药物输送,在本文中提到。树状大分子主要根据其官能团进行分类,这使得活性化合物的简明封装和生物材料的结构模仿成为可能。在其他聚合物中不常见的一种罕见性质有助于稳定树状大分子的表面,以扩大其在水中的溶解度。树突分子有各种各样的应用,如树突分子、树突分子、树突化聚合物和超支化聚合物,它们是根据分子量组织的。树状大分子的作用是附着广泛的化学实体的能力,以及通过定制药物递送改变药代动力学和药效学特征的能力。总而言之,这项研究揭示了树状大分子复杂的结构和多功能性是如何使它们成为优秀的药物递送载体的,因为它们可以精确地修改其性质以达到特殊要求。药物可以针对神经炎症性疾病,并且通过树突分子使其更易于溶解和稳定,树突分子也可以提供多种递送模式。此外,它们在基因转染和传感器生产方面显示出诱人的能力,在农药输送和医药等行业的不同用途上接近它们的潜力。由于具有基因治疗、药物输送和其他科学和医学专业的潜力,通过下一步的研究和临床调查,树突状分子正在成为制药和医疗行业的重要组成部分。
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引用次数: 0
Investigating the potential association of Helicobacter pylori cagA, vacA s1/s2, iceA1, iceA2, babA2, sabA, and oipA genotypes with gastric disease severity. 探讨幽门螺杆菌cagA、vacA s1/s2、iceA1、iceA2、babA2、sabA和oipA基因型与胃病严重程度的潜在关联。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-02 DOI: 10.14715/cmb/2025.70.1.9
Karwan Ismael Othman, Salah Tofik Jalal Balaky

Helicobacter pylori is a pathogen that infects the gastric mucosa of the stomach and can be asymptomatic or lead to disorders ranging from gastric inflammation to gastric adenocarcinoma. This study aimed to find the association of H. pylori virulence factors and their combinations with severity of the disease caused by the bacterium. This cross-sectional study involved 203 patients admitted to the gastroenterology units of the Rizgary Hospital, Erbil, Iraq from July 2021 to May 2022. Biopsy samples were taken, cultured and identified as H. pylori using biochemical and molecular approaches. PCR was employed to amplify virulence genes cagA, vacA s1/s2, iceA1, iceA2, babA2, sabA, and oipA. The most common allelic combination found among the isolates was s2/m1 detected in 33 (36.26%), followed by s1/m1 which was detected in 17 (18.68%). Other genotypes s2/m2 and s1/m2 were recorded in 15 (16.48%) and 12 (13.18%) of the total samples respectively. While the cagA gene was present in 55/91 (60.43%), iceA1 and iceA2 were found in 70 (76.92%) and 54 (59.34%) of the tested isolates respectively. Furthermore, results showed that only four isolates were positive for all virulence factor genes (4.39%). In conclusion, data produced from this study confirmed that the rate of the isolates with all virulence factors was very low. The presence of different virulence factors combination could be used to identify patients who are at high risk for the disease caused by the pathogen and its severity.

幽门螺杆菌是一种感染胃粘膜的病原体,可无症状或导致从胃炎症到胃腺癌的各种疾病。本研究旨在发现幽门螺杆菌毒力因子及其组合与该细菌引起的疾病严重程度的关系。这项横断面研究涉及2021年7月至2022年5月期间在伊拉克埃尔比勒Rizgary医院胃肠科住院的203名患者。活检样本,培养和鉴定为幽门螺杆菌使用生化和分子方法。采用PCR扩增毒力基因cagA、vacA s1/s2、iceA1、iceA2、babA2、sabA和oipA。检出最多等位基因组合的是33株(36.26%)s2/m1,其次是17株(18.68%)s1/m1。s2/m2和s1/m2基因型分别占15份(16.48%)和12份(13.18%)。cagA基因在55/91株(60.43%)中检出,iceA1和iceA2分别在70株(76.92%)和54株(59.34%)中检出。结果表明,毒力因子基因全部阳性的菌株只有4株(4.39%)。总之,本研究得出的数据证实,具有所有毒力因子的分离株的比例非常低。不同毒力因子组合的存在可用于识别由病原体引起的疾病的高危患者及其严重程度。
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引用次数: 0
Alzheimer's disease: assessing the therapeutic potential of anti-Aβ (Beta-Amyloid) treatments. 阿尔茨海默病:评估抗β -淀粉样蛋白治疗的治疗潜力。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-02 DOI: 10.14715/cmb/2025.70.1.12
Jawza A Almutairi

One of the most common forms of dementia and a neurodegenerative illness is Alzheimer's disease (AD), which is distinguished by impaired memory and cognitive dysfunction. Decades of research have been devoted to determining its etiology, pathogenic processes, and biomarkers to facilitate early identification and clinical investigations for therapy. Neural atrophy and broken connections between neurons are the outcomes of the illness. The amyloid beta (Aβ) cascade is among the most widely recognized and important hypotheses of the numerous hypotheses regarding the pathogenesis of AD. This theory suggests that the breakdown of the amyloid precursor protein (APP) produces Aβ monomers. These monomers are then converted into hazardous oligomers, which in turn form β-sheets, fibrils, and plaques after being formed. The amyloid cascade theory was covered in this review, along with a summary of how it is used to diagnose and treat Alzheimer's. Specifically, we covered the drawbacks, potential, and significant unsolved issues with the anti-Aβ therapy that is now in use, as well as plans for more research and the creation of more workable Aβ-targeted methods to optimize AD early detection and management.

阿尔茨海默病(AD)是最常见的痴呆症和神经退行性疾病之一,其特点是记忆受损和认知功能障碍。数十年的研究一直致力于确定其病因,致病过程和生物标志物,以促进早期识别和临床研究治疗。神经萎缩和神经元之间的连接断裂是这种疾病的结果。淀粉样蛋白(Aβ)级联是众多关于阿尔茨海默病发病机制的假说中最被广泛认可和最重要的假说之一。这一理论表明淀粉样蛋白前体蛋白(APP)的分解产生Aβ单体。这些单体随后转化为有害的低聚物,这些低聚物在形成后又形成β片、原纤维和斑块。这篇综述涵盖了淀粉样蛋白级联理论,并总结了它如何用于诊断和治疗阿尔茨海默病。具体来说,我们涵盖了目前使用的抗a β治疗的缺点、潜力和重大未解决的问题,以及更多研究和创造更可行的a β靶向方法来优化AD的早期检测和管理的计划。
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引用次数: 0
Association of interleukin polymorphisms and inflammatory markers with hospitalization, survival, and COVID-19 severity in type 1 diabetes patients: A multivariate and Cox regression analysis. 1型糖尿病患者白细胞介素多态性和炎症标志物与住院、生存和COVID-19严重程度的关系:多因素和Cox回归分析
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-02 DOI: 10.14715/cmb/2025.70.1.14
Mohammed Yousif Abdullah, Farah Abdulkhaleq Khattab Alhaddad, Chateen Izaddin Ali Pambuk, Sonia Marghali

This study investigates the association between interleukin polymorphisms (IL-6, IL-10, IL-12A, and IL-18), inflammatory markers, and COVID-19 severity in Type 1 diabetes (T1D) patients. A prospective observational study enrolled 80 female T1D patients hospitalized with COVID-19 and a control group of 30 females without COVID-19. Significantly higher cytokine levels were observed in COVID-19 patients (IL-6: 64.1 ± 30.1 pg/mL, IL-10: 11.7 ± 5.8 pg/mL, IL-12A: 6.7 ± 2.9 pg/mL, IL-18: 195.4 ± 60.7 pg/mL) compared to controls (all p < 0.001). Genotype analysis revealed that the IL-6 GG and IL-18 TG genotypes were associated with elevated cytokine levels, prolonged hospitalization, and increased mortality risk (hazard ratios [HR]: IL-6 GG: 1.25, IL-18 TG: 1.30). ROC analysis indicated IL-18 (AUC: 0.88) and IL-6 (AUC: 0.84) as strong predictors of hospitalization. Cox regression showed that IL-6 and IL-18 levels significantly affected hospitalization duration and survival, while IL-12A displayed a protective effect (HR: 0.92). Kaplan-Meier analysis confirmed shorter survival for the IL-6 GG and IL-18 TG genotypes, supporting the prognostic role of cytokine levels and genotypes in COVID-19 management. This study highlights the potential of interleukin polymorphisms as biomarkers for COVID-19 severity in T1D patients.

本研究探讨了1型糖尿病(T1D)患者白细胞介素多态性(IL-6、IL-10、IL-12A和IL-18)、炎症标志物和COVID-19严重程度之间的关系。一项前瞻性观察性研究纳入了80名因COVID-19住院的女性T1D患者和30名未患COVID-19的女性对照组。新冠肺炎患者细胞因子水平显著高于对照组(IL-6: 64.1±30.1 pg/mL, IL-10: 11.7±5.8 pg/mL, IL-12A: 6.7±2.9 pg/mL, IL-18: 195.4±60.7 pg/mL)(均p < 0.001)。基因型分析显示,IL-6 GG和IL-18 TG基因型与细胞因子水平升高、住院时间延长和死亡风险增加相关(危险比[HR]: IL-6 GG: 1.25, IL-18 TG: 1.30)。ROC分析显示IL-18 (AUC: 0.88)和IL-6 (AUC: 0.84)是住院治疗的强预测因子。Cox回归分析显示,IL-6和IL-18水平显著影响住院时间和生存,IL-12A则具有保护作用(HR: 0.92)。Kaplan-Meier分析证实,IL-6 GG和IL-18 TG基因型患者的生存期较短,支持细胞因子水平和基因型在COVID-19治疗中的预后作用。这项研究强调了白细胞介素多态性作为T1D患者COVID-19严重程度的生物标志物的潜力。
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引用次数: 0
Investigation of bacterial gut microbiome in diverse Egyptian populations "pilot study". 不同埃及人群肠道菌群调查“试点研究”。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-02 DOI: 10.14715/cmb/2025.70.1.8
Kareem Talaat Mohamed, Sarah Shabayek, Nora Fahmy Mahmoud, Mahmoud Mohamed Tawfick, Amro Mohamed Said Hanora

The gut microbiota plays a huge role in human health regarding immunity, metabolism, and nutrient absorption. In this work, the gut microbiota, with its bacterial community structure, is studied using whole genome shotgun (WGS) sequencing for populations from two different geographical regions in Egypt: Cairo (urban) and Ismailia (rural). Fecal samples were obtained from six healthy individuals, three from Cairo and three from Ismailia, of ages ranging from 43 to 52 years. Alpha diversity, measured as Shannon, inverse Simpson, and OTUs, showed no significant differences between the two cities. However, beta diversity analysis by Principal Coordinate Analysis (PCoA) revealed diverse microbial compositions. Thus, only the Ismailia samples contained higher levels of butyrate-producing bacteria involved in maintaining intestinal health, such as Faecalibacterium prausnitzii and Akkermansia muciniphila. On the other hand, there was a higher prevalence in Cairo of bacteria associated with protein and fat metabolism, like Bacteroides thetaiotaomicron. Such findings explain the influence of environmental factors in shaping gut microbiota and show that to get a comprehensive understanding of regional differences, many wider-ranging studies need to be conducted.

肠道菌群在人体免疫、新陈代谢和营养吸收方面发挥着巨大的作用。在这项工作中,利用全基因组霰弹枪(WGS)测序技术研究了埃及两个不同地理区域:开罗(城市)和伊斯梅利亚(农村)的人群的肠道微生物群及其细菌群落结构。收集了6名健康个体的粪便样本,其中3名来自开罗,3名来自伊斯梅利亚,年龄从43岁到52岁不等。以Shannon、逆Simpson和OTUs衡量的Alpha多样性在两个城市之间没有显著差异。然而,主坐标分析(PCoA)的β多样性分析显示微生物组成存在差异。因此,只有伊斯梅利亚样本含有较高水平的产生丁酸的细菌,这些细菌与维持肠道健康有关,如prausnitzii粪杆菌和嗜粘杆菌。另一方面,开罗与蛋白质和脂肪代谢相关的细菌,如拟杆菌(Bacteroides thetaiotaomicron)的患病率更高。这些发现解释了环境因素对肠道微生物群形成的影响,并表明要全面了解区域差异,需要进行许多更广泛的研究。
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引用次数: 0
Genomic insights into Enterococcus faecalis implicated in endodontic infections: resistance, virulence, and genetic variability. 粪肠球菌与牙髓感染相关的基因组研究:耐药性、毒力和遗传变异。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-02 DOI: 10.14715/cmb/2025.70.1.11
Nezar Boreak, Ahlam Abdu Mohammed Mowkly, Amnah Sharwani, Shroog Ali Almasoudi, Ahmed Huraysi, Ibrahim Ali Sulily, Ghadi Ghamdhan Jali, Mohammed Abed Basihi, Osama Alfaifi, Elham Ali Tohari, Rehaf Madkhali

Endodontic infections, often involving multispecies bacterial communities, present significant challenges in treatment due to their complex pathogenic mechanisms and resistance to conventional therapies. Enterococcus faecalis is a facultative anaerobic gram-positive bacterium that has been frequently recovered from secondary or persistent endodontic infections. This study investigates the population structure, resistome, mobilome, and virulome of E. faecalis isolated from oral cavity sources, focusing on 22 genomes sequenced from saliva and root canal samples. The genome sequence analysis revealed a diversity of 14 sequence types (STs), highlighting genetic variability within oral E. faecalis populations. Virulence profiling identified 39 genes involved in adherence, biofilm formation, toxin production, stress response, and immune evasion. Antimicrobial resistance (AMR) genes, including lsa(A), efrA, and tetM, were prevalent across all genomes, indicating potential multidrug resistance. Mobile genetic elements (MGEs), such as insertion sequences, transposons, prophages, and plasmids, were also identified, facilitating genetic exchange within and between species. Network analyses identified central virulence genes (e.g., asa1, gelE) and AMR genes (e.g., ANT (6)-Ia, dfrE) crucial for pathogenicity and resistance, highlighting their pivotal roles in E. faecalis infections. This study provides comprehensive insights into the genomic characteristics, AMR genes, virulence factors, and genetic mobile elements associated with E. faecalis isolates from the oral cavity, offering implications for dental health and potential strategies for infection control and treatment.

牙髓感染通常涉及多物种细菌群落,由于其复杂的致病机制和对常规治疗的耐药性,在治疗方面提出了重大挑战。粪肠球菌是兼性厌氧革兰氏阳性细菌,经常从继发性或持续性牙髓感染中恢复。本研究研究了从口腔源分离的粪肠杆菌的种群结构、抵抗组、移动组和病毒组,重点研究了来自唾液和根管样本的22个基因组序列。基因组序列分析揭示了14种序列类型(STs)的多样性,突出了口腔粪肠杆菌群体的遗传变异性。毒力谱鉴定出39个基因参与粘附、生物膜形成、毒素产生、应激反应和免疫逃避。抗微生物药物耐药性(AMR)基因,包括lsa(A)、efrA和tetM,在所有基因组中普遍存在,表明潜在的多药耐药性。移动遗传元件(MGEs),如插入序列、转座子、噬菌体和质粒,也被发现,促进物种内和物种间的遗传交换。网络分析确定了对致病性和耐药性至关重要的中心毒力基因(如asa1、gelE)和抗菌素耐药性基因(如ANT (6)-Ia、dfrE),突出了它们在粪肠球菌感染中的关键作用。该研究提供了与口腔分离的粪肠杆菌相关的基因组特征、AMR基因、毒力因子和遗传移动元件的全面见解,为牙齿健康和感染控制和治疗的潜在策略提供了启示。
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引用次数: 0
Alpha-mangostin and nab-paclitaxel in breast cancer cell models: improved antitumor efficacy through combination therapy. α -山竹苷和nab-紫杉醇在乳腺癌细胞模型中的联合治疗:提高抗肿瘤效果。
IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-02 DOI: 10.14715/cmb/2025.70.1.6
Özge Özgen, İdil Çetin, Fatmahan Atalar, Mehmet Rıfkı Topçul

In the pursuit of more effective breast cancer therapies, the investigation of interactions between novel compounds and established chemotherapeutics has become increasingly important. This study investigates the combinatory effects of alpha-mangostin (α-MG) and nab-paclitaxel on MCF-7 and MDA-MB-231 cell lines, utilizing the xCELLigence RTCA system for continuous real-time cellular analysis, BrdU incorporation assays for proliferation assessment, and the quantification of mitotic activity and caspase-3/7 levels to elucidate apoptotic mechanisms. Our findings demonstrate that both α-MG and nab-paclitaxel independently induce significant inhibition of cellular proliferation and modulate cell cycle dynamics over a 24 to 72-hour period. Notably, when combined, these agents exhibit a pronounced enhancement of cell cycle inhibition and apoptosis, surpassing the effects observed with monotherapy. This potentiation effect suggests that α-MG augments the therapeutic efficacy of nab-paclitaxel, potentially allowing for reduced dosages in clinical applications. The study underscores the potential of α-MG as an adjuvant in breast cancer treatment, offering a promising strategy to optimize therapeutic regimens, minimize adverse effects, and improve patient outcomes in clinical oncology.

在寻求更有效的乳腺癌治疗方法的过程中,研究新化合物与现有化疗药物之间的相互作用变得越来越重要。本研究利用xCELLigence RTCA系统对MCF-7和MDA-MB-231细胞株进行连续实时细胞分析,BrdU掺入试验进行增殖评估,定量分析有丝分裂活性和caspase-3/7水平以阐明凋亡机制,研究α-山药苷(α-MG)和nab-紫杉醇对MCF-7和MDA-MB-231细胞株的联合作用。我们的研究结果表明,α-MG和nab-紫杉醇都能在24 - 72小时内独立诱导细胞增殖和调节细胞周期动力学。值得注意的是,当联合使用时,这些药物表现出明显的细胞周期抑制和细胞凋亡的增强,超过了单药治疗所观察到的效果。这种增强效应表明α-MG增强了nab-紫杉醇的治疗效果,可能允许在临床应用中减少剂量。该研究强调了α-MG作为乳腺癌辅助治疗的潜力,为优化治疗方案、减少不良反应和改善临床肿瘤患者预后提供了有希望的策略。
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Cellular and molecular biology
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