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Deciphering relationship between depression and microbial molecules based on multi-omics: A case study of Chaigui Granules 基于多组学破译抑郁症与微生物分子之间的关系:柴桂颗粒的案例研究
IF 4.7 4区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2024-10-01 DOI: 10.1016/j.chmed.2023.12.003
Qi Wang , Yingxia Zhao , Xuemei Qin , Junsheng Tian

Objective

To decipher the antidepression effect of Chaigui Granules (CGKL) from the relationship between depression and microbial molecules based on multi-omics.

Methods

Male SD rats were subjected to chronic unpredictable mild stress (CUMS) for seven weeks. The antidepressants CGKL extract and CGKL were administered for the following four weeks. The behavior test and the content of monoamine neurotransmitters were used to evaluate the efficacy of CGKL. The 16S rRNA sequencing, LC-MS technology and molecular biological techniques were used to explore the pharmacological mechanism of CGKL.

Results

CGKL treatment obviously alleviated the depressive behavioral indicators and regulated the content of monoamine neurotransmitters, and presented dose-dependent manner. CGKL could also improve the arginine metabolism disorder of gut microbiota in the jejunum. Meanwhile, the contents of arginine and its metabolites in the serum and hippocampus were regulated to normal levels. Further investigation indicated that the expression of related rate-limiting enzyme genes and proteins in the hippocampus was validated by qRT-PCR and Western blotting. The results showed that the gut microbiota, metabolites, and genes or proteins of rate-limiting enzymes involved in the arginine pathway were significantly regulated by CGKL.

Conclusion

The present study demonstrates that CGKL might exert antidepressant effects through regulating arginine metabolism, and its mechanism may be related to modulating the gut microbiota and related metabolic enzyme.
方法对雄性SD大鼠进行为期7周的慢性不可预知的轻度应激(CUMS)。对雄性 SD 大鼠进行为期七周的慢性不可预知轻度应激反应(CUMS),并在随后的四周内服用抗抑郁药物 CGKL 提取物和 CGKL。通过行为测试和单胺神经递质含量来评估 CGKL 的疗效。结果 CGKL能明显缓解抑郁行为指标,调节单胺神经递质含量,并呈剂量依赖性。CGKL还能改善空肠中肠道微生物群的精氨酸代谢紊乱。同时,精氨酸及其代谢产物在血清和海马中的含量也被调节至正常水平。进一步的研究表明,海马中相关限速酶基因和蛋白质的表达通过 qRT-PCR 和 Western 印迹得到了验证。结论本研究表明,CGKL 可通过调节精氨酸代谢发挥抗抑郁作用,其机制可能与调节肠道微生物群和相关代谢酶有关。
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引用次数: 0
Exploration of compatibility rules and discovery of active ingredients in TCM formulas by network pharmacology 利用网络药理学探索中药配方的相容性规则并发现其中的有效成分
IF 4.7 4区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2024-10-01 DOI: 10.1016/j.chmed.2023.09.008
Yishu Liu , Xue Li , Chao Chen , Nan Ding , Shiyu Ma , Ming Yang
Network pharmacology is an interdisciplinary field that utilizes computer science, technology, and biological networks to investigate the intricate interplay among compounds/ingredients, targets, and diseases. Within the realm of traditional Chinese medicine (TCM), network pharmacology serves as a scientific approach to elucidate the compatibility relationships and underlying mechanisms of action in TCM formulas. It facilitates the identification of potential active ingredients within these formulas, providing a comprehensive understanding of their holistic and systematic nature, which aligns with the holistic principles inherent in TCM theory. TCM formulas exhibit complexity due to their multi-component characteristic, involving diverse targets and pathways. Consequently, investigating their material basis and mechanisms becomes challenging. Network pharmacology has emerged as a valuable approach in TCM formula research, leveraging its holistic and systematic advantages. The manuscript aims to provide an overview of the application of network pharmacology in studying TCM formula compatibility rules and explore future research directions. Specifically, we focus on how network pharmacology aids in interpreting TCM pharmacological theories and understanding formula compositions. Additionally, we elucidate the process of utilizing network pharmacology to identify active ingredients within TCM formulas. These findings not only offer novel research models and perspectives for integrating network pharmacology with TCM theory but also present new methodologies for investigating TCM formula compatibility. All in all, network pharmacology has become an indispensable and crucial tool in advancing TCM formula research.
网络药理学是一个跨学科领域,它利用计算机科学、技术和生物网络来研究化合物/成分、靶点和疾病之间错综复杂的相互作用。在传统中药领域,网络药理学是阐明中药配方中配伍关系和潜在作用机制的科学方法。网络药理学有助于识别中药配方中的潜在活性成分,全面了解中药配方的整体性和系统性,这与中医理论固有的整体性原则相一致。中药配方因其多组分特征而呈现出复杂性,涉及不同的靶点和途径。因此,研究其物质基础和机理具有挑战性。网络药理学利用其整体性和系统性的优势,已成为中药方剂研究的重要方法。本稿旨在概述网络药理学在研究中药配方相克规律中的应用,并探讨未来的研究方向。具体而言,我们重点探讨了网络药理学如何帮助解释中医药理理论和理解方剂组成。此外,我们还阐明了利用网络药理学识别中药配方中有效成分的过程。这些发现不仅为网络药理学与中医理论的结合提供了新的研究模式和视角,也为研究中药配方的兼容性提供了新的方法。总之,网络药理学已成为推动中药配方研究不可或缺的重要工具。
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引用次数: 0
Ginsenoside Rb1 in cardiovascular and cerebrovascular diseases: A review of therapeutic potentials and molecular mechanisms 心脑血管疾病中的人参皂苷 Rb1:治疗潜力和分子机制综述
IF 4.7 4区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2024-10-01 DOI: 10.1016/j.chmed.2024.09.006
Yueqin Song , Chen Chen , Wei Li
Cardiovascular and cerebrovascular diseases (CCVDs), which are circulatory system diseases caused by heart defects and vascular diseases, are the major noncommunicable diseases affecting global public health. With the improvement of economic level and the change of human lifestyle, the prevalence of CCVDs continues to increase. Ginseng (Panax ginseng C. A. Mey.) was widely used in traditional diseases due to its supposed tonic properties. Ginsenoside Rb1 (G-Rb1) is the most abundant active ingredient with multiple pharmacological effects extracted from ginseng, which has been shown to have potential benefits on the cardiovascular system through a variety of mechanisms, including anti-oxidation, anti-inflammatory, regulation of vasodilation, reduction of platelet adhesion, influence of calcium ion channels, improvement of lipid distribution, involving in glucose metabolism and controlling blood sugar. This review reviewed the protective effects of G-Rb1 on CCVDs and its potential mechanisms, such as atherosclerosis (AS), hypertension, coronary heart disease (CHD), ischemic stroke (IS) and periocular microvascular retinopathy. Finally, we reviewed and reported the results of in vivo and in vitro experiments using G-Rb1 to improve CCVDs, highlighted its efficacy, safety, and limitations.
心脑血管疾病(CCVDs)是由心脏缺陷和血管疾病引起的循环系统疾病,是影响全球公众健康的主要非传染性疾病。随着经济水平的提高和人类生活方式的改变,CCVDs 的发病率持续上升。人参(Panax ginseng C. A. Mey.)人参皂苷 Rb1(G-Rb1)是从人参中提取的具有多种药理作用的最丰富的活性成分,已被证明通过多种机制对心血管系统具有潜在的益处,包括抗氧化、抗炎、调节血管扩张、减少血小板粘附、影响钙离子通道、改善脂质分布、参与葡萄糖代谢和控制血糖。本综述综述了 G-Rb1 对慢性心血管疾病的保护作用及其潜在机制,如动脉粥样硬化(AS)、高血压、冠心病(CHD)、缺血性中风(IS)和眼周微血管视网膜病变。最后,我们回顾并报告了利用G-Rb1改善CCVDs的体内和体外实验结果,强调了其有效性、安全性和局限性。
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引用次数: 0
DNA metabarcoding uncovers fungal communities in Zingiberis Rhizoma DNA 代谢编码揭示根茎真菌群落
IF 4.7 4区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2024-10-01 DOI: 10.1016/j.chmed.2023.12.001
Chune Fan, Yanan Xu, Yufeng Li, Meihua Yang, Jianping Han, Xiaohui Pang

Objective

Zingiberis Rhizoma (ZR, Ganjiang in Chinese), also known as dried ginger, is a popular spice and medicinal herb that has been used for several thousand years. However, ZR is easily contaminated by fungi and mycotoxin under suitable conditions, and might be hazardous to the health and safety of consumers, thus concerns about the herb’s safety have been raised. The aim of this study was to investigate the fungal community and the effects of collection areas and processing methods on the fungal community in ZR.

Methods

A total of 18 ZR samples were collected from four provinces of China, and the samples were divided into four groups based on collecting sites. Meanwhile, the samples collected in Sichuan Province, China were divided into three groups based on the processing methods. We employed the Illumina MiSeq PE300 platform and targeted the internal transcribed spacer 2 (ITS2) sequences to investigate fungal contamination in ZR samples, and the difference in fungal community among the groups of different collection sites and processing methods.

Results

All 18 samples were contaminated with fungi. Ascomycota was the dominant phyla, accounting for 34.46%−100% of the fungal reads. At the genus level, Candida, Diutina, and Aspergillus were the most dominant genera, with relative abundances of 0–98.37%, 0–99.82%, and 0–79.08%, respectively. Meanwhile, four potential toxigenic fungi and seven human pathogens were found. Furthermore, differences in the community composition of ZR samples from four collecting sites and three processing methods were observed.

Conclusion

DNA metabarcoding provides a novel insight into fungal community diversity in ZR samples, providing references to ensure the sustainable utilization and quality research of ZR.
目的Zingiberis Rhizoma(ZR,中文名为干姜)是一种广受欢迎的香料和药材,已有数千年的使用历史。然而,在适当的条件下,干姜很容易受到真菌和霉菌毒素的污染,可能会危害消费者的健康和安全,因此人们对这种草药的安全性表示担忧。本研究旨在调查浙贝母中的真菌群落,以及采集地区和加工方法对真菌群落的影响。同时,根据处理方法将在四川省采集的样本分为三组。我们采用 Illumina MiSeq PE300 平台,以内部转录间隔序列 2(ITS2)为靶标,研究了 ZR 样品的真菌污染情况,以及不同采集地点和处理方法的样本群落中真菌群落的差异。Ascomycota 是主要的真菌门,占真菌读数的 34.46%-100%。在属的水平上,白色念珠菌属(Candida)、狄氏菌属(Diutina)和曲霉属(Aspergillus)是最主要的属,相对丰度分别为 0-98.37%、0-99.82% 和 0-79.08%。同时,还发现了 4 种潜在的致毒真菌和 7 种人类病原体。此外,还观察到来自四个采集地点和三种加工方法的 ZR 样品的群落组成存在差异。结论DNA 代谢编码为 ZR 样品中真菌群落多样性提供了新的见解,为确保 ZR 的可持续利用和质量研究提供了参考。
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引用次数: 0
Phylogenetic and spatial patterns of herbal medicine compounds: Which medicinal plants are phytochemically characterized? 草药化合物的系统发育和空间模式:哪些药用植物具有植物化学特征?
IF 4.7 4区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2024-10-01 DOI: 10.1016/j.chmed.2024.07.001
Dacheng Hao , Yaoxuan Wang , Peigen Xiao , Xiaojie Gu

Objective

The study of phytometabolites of medicinal plants and their phylogenetic distribution is an important content of pharmacophylogeny. The objectives of this study were to provide an updated estimate of the extent to which the medicinal plants were investigated phytochemically and relate this to the species-level phylogeny and their geographical pattern.

Methods

Here, we further characterized 1 648 phytometabolites, including terpenoids, steroids, flavonoids, phenylpropanoids, phenolics, alkaloids, etc., reported in journals Chinese Traditional and Herbal Drugs (Zhong Cao Yao) and Chinese Herbal Medicines (CHM) from the phylogenetic and spatial perspectives. According to the structural characteristics, terpenoids, flavonoids, alkaloids and phenylpropanoids were subdivided into subclasses, and the research effort of phytometabolites was for the first time delineated at both subclass and phylogenetic levels.

Results

The phytometabolites of 90 families were reported on two journals in three years. It is noted that terpenoids with diverse bioactivities still constitute the primary object of phytochemical research, followed by flavonoids, phenolics, phenylpropanoids and alkaloids. Among the reported species, the family Asteraceae had the most, followed by Lamiaceae, Fabaceae, and Ranunculaceae. In the phylogenetic distribution of the reported phytometabolites, the net relatedness index (NRI) results revealed a clustered structure for triterpene, iridoid, flavone, flavonol, coumarin, indole alkaloid and terpenoid alkaloid, while the nearest taxon index (NTI) metric identified the clustered structure for triterpene, sesquiterpene, indole alkaloid and terpenoid alkaloid. Especially in Ranunculaceae, there were more reports on triterpene and terpenoid alkaloid subclasses. The overdispersion pattern of diterpene and phenolic was suggested by NRI and NTI respectively, albeit more reported diterpenes and phenolics were in Lamiaceae. The geographical distribution hotspots of reported species and compounds thereof highlighted the enormous progress of herbal medicine research and industry, which play a positive role in the future drug discovery and development.

Conclusion

These results provide new dimensions and perspectives in the context of pharmacophylogeny for perceiving and evaluating research trends and flashpoints in medicinal phytochemistry.
研究药用植物的植物代谢物及其系统发育分布是药物系统发育的重要内容。本研究的目的是对药用植物的植物化学研究程度进行最新估计,并将其与物种水平的系统发育及其地理格局联系起来。方法我们对 1 648 种植物代谢物(包括萜类、甾体、黄酮类、苯丙类、酚类、生物碱等)进行了进一步表征、这些植物代谢物包括萜类化合物、甾体化合物、黄酮类化合物、苯丙酮类化合物、酚类化合物、生物碱类化合物等。根据结构特征,将萜类、黄酮类、生物碱类和苯丙类化合物细分为亚类,首次在亚类和系统发育水平上对植物代谢物的研究工作进行了划分。结果表明,具有多种生物活性的萜类化合物仍是植物化学研究的主要对象,其次是黄酮类、酚类、苯丙类和生物碱类。在已报道的物种中,菊科最多,其次是唇形科、豆科和毛茛科。在所报道的植物代谢物的系统发育分布中,净亲缘关系指数(NRI)结果显示三萜类、铱类、黄酮、黄酮醇、香豆素、吲哚生物碱和萜类生物碱呈聚类结构,而最近类群指数(NTI)指标则确定了三萜类、倍半萜类、吲哚生物碱和萜类生物碱的聚类结构。特别是在毛茛科,有关三萜类和萜类生物碱亚类的报道较多。NRI 和 NTI 分别表明了二萜和酚类的过度分散模式,尽管二萜和酚类在扁桃科中的报道较多。报告的物种及其化合物的地理分布热点彰显了中草药研究和产业的巨大进步,这对未来的药物发现和开发起到了积极作用。
{"title":"Phylogenetic and spatial patterns of herbal medicine compounds: Which medicinal plants are phytochemically characterized?","authors":"Dacheng Hao ,&nbsp;Yaoxuan Wang ,&nbsp;Peigen Xiao ,&nbsp;Xiaojie Gu","doi":"10.1016/j.chmed.2024.07.001","DOIUrl":"10.1016/j.chmed.2024.07.001","url":null,"abstract":"<div><h3>Objective</h3><div>The study of phytometabolites of medicinal plants and their phylogenetic distribution is an important content of pharmacophylogeny. The objectives of this study were to provide an updated estimate of the extent to which the medicinal plants were investigated phytochemically and relate this to the species-level phylogeny and their geographical pattern.</div></div><div><h3>Methods</h3><div>Here, we further characterized 1 648 phytometabolites, including terpenoids, steroids, flavonoids, phenylpropanoids, phenolics, alkaloids, etc., reported in journals <em>Chinese Traditional and Herbal Drugs</em> (Zhong Cao Yao) and <em>Chinese Herbal Medicines</em> (CHM) from the phylogenetic and spatial perspectives. According to the structural characteristics, terpenoids, flavonoids, alkaloids and phenylpropanoids were subdivided into subclasses, and the research effort of phytometabolites was for the first time delineated at both subclass and phylogenetic levels.</div></div><div><h3>Results</h3><div>The phytometabolites of 90 families were reported on two journals in three years. It is noted that terpenoids with diverse bioactivities still constitute the primary object of phytochemical research, followed by flavonoids, phenolics, phenylpropanoids and alkaloids. Among the reported species, the family Asteraceae had the most, followed by Lamiaceae, Fabaceae, and Ranunculaceae. In the phylogenetic distribution of the reported phytometabolites, the net relatedness index (NRI) results revealed a clustered structure for triterpene, iridoid, flavone, flavonol, coumarin, indole alkaloid and terpenoid alkaloid, while the nearest taxon index (NTI) metric identified the clustered structure for triterpene, sesquiterpene, indole alkaloid and terpenoid alkaloid. Especially in Ranunculaceae, there were more reports on triterpene and terpenoid alkaloid subclasses. The overdispersion pattern of diterpene and phenolic was suggested by NRI and NTI respectively, albeit more reported diterpenes and phenolics were in Lamiaceae. The geographical distribution hotspots of reported species and compounds thereof highlighted the enormous progress of herbal medicine research and industry, which play a positive role in the future drug discovery and development.</div></div><div><h3>Conclusion</h3><div>These results provide new dimensions and perspectives in the context of pharmacophylogeny for perceiving and evaluating research trends and flashpoints in medicinal phytochemistry.</div></div>","PeriodicalId":9916,"journal":{"name":"Chinese Herbal Medicines","volume":"16 4","pages":"Pages 589-598"},"PeriodicalIF":4.7,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141847674","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Inula britannica ameliorates alcohol-induced liver injury by modulating SIRT1-AMPK/Nrf2/NF-κB signaling pathway 茵陈通过调节 SIRT1-AMPK/Nrf2/NF-κB 信号通路改善酒精诱导的肝损伤
IF 4.7 4区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2024-10-01 DOI: 10.1016/j.chmed.2023.12.006
Zhennan Meng , Mengyuan Li , Xiaoli Wang , Kuo Zhang , Chunfu Wu , Xiaoshu Zhang

Objective

Inula britannica is a traditional Chinese medicinal and functional food with various effects such as anti-liver injury, hypoglycemia, antioxidants, and anti-tumor. The aim of this study was to investigate the protective effects and mechanisms of the ethanolic extract of I. britannica (EEIB) on alcohol-induced liver injury in mice.

Methods

Fifty-six female C57BL/6 mice were randomly divided into seven groups: control group (Con), ethanol feeding model group (EtOH), Silibinin positive treatment group (EtOH + Silibinin 100 mg/kg), EEIB treatment group (EtOH + EEIB 100, 200, and 400 mg/kg), and EEIB control group (EEIB 400 mg/kg). The National Institute on Alcohol Abuse and Alcoholism (NIAAA) ethanol-feeding model was used to study the effects of EEIB on alcohol-induced lipid metabolism, inflammation, oxidative stress, and fibril formation in mice by histopathological evaluation, immunofluorescence staining, Western blotting analysis and molecular docking.

Results

EEIB reduced liver indices to different degrees to normal levels and improved liver morphology in mice. EEIB inhibited alcohol-induced liver injury by activating the sirtuin 1 (SIRT1)-adenosine monophosphate-activated protein kinase (AMPK) signaling pathway in the liver of alcohol-fed mice, in which sesquiterpenes may be the potential active ingredients, and also down-regulated the expression of alpha-smooth muscle actin (α-SMA), collagen alpha (Collagen I), tumor necrosis factor-alpha (TNF-α) and attenuated alcohol-induced liver injury. In addition, EEIB also activated the nuclear factor erythroid 2-related factor 2 (Nrf2) signaling pathway, which alleviated alcohol-induced liver injury at the level of oxidative stress. Notably, the EEIB control group demonstrated that EEIB had no toxic effects in mice. EEIB reduced alcoholic liver injury in a dose-dependent manner. Its therapeutic efficacy was comparable to, if not better than, that of Silibinin when administered at a dose of 400 mg/kg.

Conclusion

EEIB showed significant therapeutic effects on alcohol-induced liver injury in mice, and its mechanism of action was related to the SIRT1-AMPK, nuclear factor-kappa B (NF-κB), and Nrf2 signaling pathways, in which sesquiterpenes may be the potential active ingredients.
摘要: 茵陈是一种传统的中药和功能食品,具有抗肝损伤、降血糖、抗氧化、抗肿瘤等多种功效。本研究旨在探讨茵陈乙醇提取物(EEIB)对酒精诱导的小鼠肝损伤的保护作用及其机制。方法将56只雌性C57BL/6小鼠随机分为7组:对照组(Con)、乙醇喂养模型组(EtOH)、水飞蓟素阳性治疗组(EtOH + 水飞蓟素100 mg/kg)、EEIB治疗组(EtOH + EEIB 100、200和400 mg/kg)和EEIB对照组(EEIB 400 mg/kg)。采用美国国家酒精滥用和酒精中毒研究所(NIAAA)乙醇喂养模型,通过组织病理学评价、免疫荧光染色、Western印迹分析和分子对接,研究EEIB对酒精诱导的小鼠脂质代谢、炎症、氧化应激和纤维形成的影响。EEIB通过激活酒精喂养小鼠肝脏中的sirtuin 1(SIRT1)-单磷酸腺苷激活蛋白激酶(AMPK)信号通路,抑制酒精诱导的肝损伤,倍半萜可能是其中的潜在活性成分、EEIB还能下调α-平滑肌肌动蛋白(α-SMA)、α-胶原蛋白(胶原蛋白Ⅰ)、肿瘤坏死因子-α(TNF-α)的表达,减轻酒精诱导的肝损伤。此外,EEIB还激活了核因子红细胞2相关因子2(Nrf2)信号通路,在氧化应激水平上减轻了酒精诱导的肝损伤。值得注意的是,EEIB对照组表明EEIB对小鼠没有毒性作用。EEIB以剂量依赖的方式减轻了酒精性肝损伤。结论EEIB对酒精诱导的小鼠肝损伤有显著的治疗效果,其作用机制与SIRT1-AMPK、核因子卡巴B(NF-κB)和Nrf2信号通路有关,倍半萜可能是其中的潜在活性成分。
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引用次数: 0
Mechanism of action of protopanaxadiol ginsenosides on hepatocellular carcinoma and network pharmacological analysis 原人参皂甙对肝细胞癌的作用机制及网络药理学分析
IF 4.7 4区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2024-10-01 DOI: 10.1016/j.chmed.2024.06.002
Yue Zhou , Zi Wang , Shen Ren , Wei Li
Hepatocellular carcinoma (HCC) is one of the most prevalent malignancies globally, posing a major challenge to global health care. Protopanaxadiol ginsenosides (PDs) have been believed to significantly improve liver diseases. PDs, such as Rg3, have been developed as a new class of anti-cancer drugs. Ginsenosides Rb1, Rd, Rg3, and Rh2 exhibit effective anti-inflammatory and anti-tumor activities. Studies have confirmed that PDs could be used to treat HCC. However, the mechanism of action of PDs on HCC remains unclear. In the study, we reviewed the anti-HCC effects and mechanisms of PDs including Rb1, Rd, Rg3, Rg5, Rh2, Rk1, and Compound K (CK). Then, we searched for relevant targets of PDs and HCC from databases and enriched them for analysis. Subsequently, molecular docking was simulated to reveal molecular mechanisms. We found that PDs may treat HCC through multiple signaling pathways and related targets. PDs could inhibit the proliferation, invasion, and metastasis of HCC while promoting apoptosis and inducing differentiation. In conclusion, this review and network pharmacological analysis might offer a direction for in-depth research on related mechanisms. These insights will aid in the direction of further pharmacological studies and the development of safe and effective clinical drugs.
肝细胞癌(HCC)是全球最常见的恶性肿瘤之一,给全球医疗保健带来了重大挑战。原人参皂甙(PDs)被认为能显著改善肝脏疾病。Rg3 等人参皂甙已被开发为一类新型抗癌药物。人参皂苷 Rb1、Rd、Rg3 和 Rh2 具有有效的抗炎和抗肿瘤活性。研究证实,人参皂甙可用于治疗 HCC。然而,PDs 对 HCC 的作用机制仍不清楚。在本研究中,我们回顾了包括 Rb1、Rd、Rg3、Rg5、Rh2、Rk1 和化合物 K(CK)在内的 PDs 的抗 HCC 作用和机制。然后,我们从数据库中搜索了PDs与HCC的相关靶点,并对其进行了富集分析。随后,我们模拟了分子对接以揭示分子机制。我们发现PDs可通过多种信号通路和相关靶点治疗HCC。PDs可以抑制HCC的增殖、侵袭和转移,同时促进凋亡和诱导分化。总之,本综述和网络药理学分析为相关机制的深入研究提供了一个方向。这些见解将有助于进一步的药理学研究方向和安全有效的临床药物的开发。
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引用次数: 0
Integrative analysis of metabolome and transcriptome provides new insights into functional components of Lilii Bulbus 代谢组和转录组的整合分析为了解莉莉牛的功能成分提供了新的视角
IF 4.7 4区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2024-07-01 DOI: 10.1016/j.chmed.2023.10.004
Wenjun Wei , Tao Guo , Wenguang Fan , Mengshan Ji , Yu Fu , Conglong Lian , Suiqing Chen , Wenjing Ma , Wenfang Ma , Shuying Feng

Objective

Lilium brownii var. viridulum (LB) and L. lancifolium (LL) are the main sources of medicinal lily (Lilii Bulbus, Baihe in Chinese) in China. However, the functional components of these two species responsible for the treatment efficacy are yet not clear. In order to explore the therapeutic material basis of Lilii Bulbus, we selected L. davidii var. willmottiae (LD) only used for food as the control group to analyze the differences between LD and the other two (LB and LL).

Methods

Metabolome and transcriptome were carried out to investigate the differences of active components in LD vs LB and LD vs LL. Data of metabolome and transcriptome was analysed using various analysis methods, such as principal component analysis (PCA), hierarchical cluster analysis (HCA), and so on. Differentially expressed genes (DEGs) were enriched through KEGG and GO enrichment analysis.

Results

The PCA and HCA of the metabolome indicated the metabolites were clearly separated and varied greatly in LL and LB contrasted with LD. There were 318 significantly differential metabolites (SDMs) in LD vs LB group and 298 SDMs in LD vs LL group. Compared with LD group, the significant up-regulation of steroidal saponins and steroidal alkaloids were detected both in LB and LL groups, especially in LB group. The HCA of transcriptome indicated that there was significant difference in LB vs LD group, while the difference between LL and LD varied slightly. Additionally, 47 540 DEGs in LD vs LB group and 18 958 DEGs in LD vs LL group were identified. Notably, CYP450s involving in the biosynthesis of steroidal saponins and steroidal alkaloids were detected, and comparing with LD, CYP724, CYP710A, and CYP734A1 in LB and CYP90B in LL were all up-regulated.

Conclusion

This study suggested that steroidal saponins and steroidal alkaloids maybe the representative functional components of Lilii Bulbus, which can provide new insights for Lilii Bulbus used in the research and development of classic famous formula.

目的 棕百合(Lilium brownii var.viridulum,LB)和白百合(Lilium brownii var.viridulum,LL)是中国药用百合的主要来源。然而,这两种百合中具有治疗功效的功能成分尚不明确。方法通过代谢组和转录组研究LD与LB、LD与LL中有效成分的差异。采用主成分分析(PCA)、层次聚类分析(HCA)等多种分析方法对代谢组和转录组数据进行分析。结果 代谢组的 PCA 和 HCA 分析表明,与 LD 相比,LL 和 LB 中的代谢物明显分离且差异很大。在 LD 组和 LB 组中,有 318 个代谢物存在明显差异(SDMs),在 LD 组和 LL 组中,有 298 个代谢物存在明显差异(SDMs)。与 LD 组相比,LB 组和 LL 组的甾体皂甙和甾体生物碱都有明显的上调,尤其是在 LB 组。转录组的 HCA 显示,LB 组与 LD 组之间存在显著差异,而 LL 组与 LD 组之间的差异略有不同。此外,在 LD 组与 LB 组中发现了 47 540 个 DEGs,在 LD 组与 LL 组中发现了 18 958 个 DEGs。与 LD 组相比,LB 组的 CYP724、CYP710A 和 CYP734A1 以及 LL 组的 CYP90B 均上调。
{"title":"Integrative analysis of metabolome and transcriptome provides new insights into functional components of Lilii Bulbus","authors":"Wenjun Wei ,&nbsp;Tao Guo ,&nbsp;Wenguang Fan ,&nbsp;Mengshan Ji ,&nbsp;Yu Fu ,&nbsp;Conglong Lian ,&nbsp;Suiqing Chen ,&nbsp;Wenjing Ma ,&nbsp;Wenfang Ma ,&nbsp;Shuying Feng","doi":"10.1016/j.chmed.2023.10.004","DOIUrl":"10.1016/j.chmed.2023.10.004","url":null,"abstract":"<div><h3>Objective</h3><p><em>Lilium brownii</em> var. <em>viridulum</em> (LB) and <em>L. lancifolium</em> (LL) are the main sources of medicinal lily (<em>Lilii Bulbus</em>, Baihe in Chinese) in China. However, the functional components of these two species responsible for the treatment efficacy are yet not clear. In order to explore the therapeutic material basis of <em>Lilii Bulbus</em>, we selected <em>L. davidii</em> var. <em>willmottiae</em> (LD) only used for food as the control group to analyze the differences between LD and the other two (LB and LL).</p></div><div><h3>Methods</h3><p>Metabolome and transcriptome were carried out to investigate the differences of active components in LD <em>vs</em> LB and LD <em>vs</em> LL. Data of metabolome and transcriptome was analysed using various analysis methods, such as principal component analysis (PCA), hierarchical cluster analysis (HCA), and so on. Differentially expressed genes (DEGs) were enriched through KEGG and GO enrichment analysis.</p></div><div><h3>Results</h3><p>The PCA and HCA of the metabolome indicated the metabolites were clearly separated and varied greatly in LL and LB contrasted with LD. There were 318 significantly differential metabolites (SDMs) in LD <em>vs</em> LB group and 298 SDMs in LD <em>vs</em> LL group. Compared with LD group, the significant up-regulation of steroidal saponins and steroidal alkaloids were detected both in LB and LL groups, especially in LB group. The HCA of transcriptome indicated that there was significant difference in LB <em>vs</em> LD group, while the difference between LL and LD varied slightly. Additionally, 47 540 DEGs in LD <em>vs</em> LB group and 18 958 DEGs in LD <em>vs</em> LL group were identified. Notably, CYP450s involving in the biosynthesis of steroidal saponins and steroidal alkaloids were detected, and comparing with LD, <em>CYP724</em>, <em>CYP710A</em>, and <em>CYP734A1</em> in LB and <em>CYP90B</em> in LL were all up-regulated.</p></div><div><h3>Conclusion</h3><p>This study suggested that steroidal saponins and steroidal alkaloids maybe the representative functional components of <em>Lilii Bulbus</em>, which can provide new insights for <em>Lilii Bulbus</em> used in the research and development of classic famous formula.</p></div>","PeriodicalId":9916,"journal":{"name":"Chinese Herbal Medicines","volume":"16 3","pages":"Pages 435-448"},"PeriodicalIF":4.7,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1674638424000078/pdfft?md5=36e4859dc837025c25ed32688316af0b&pid=1-s2.0-S1674638424000078-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140524714","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genetic diversity of food-medicinal Lycium spp. in China: Insights from chloroplast genome 中国食药用枸杞的遗传多样性:叶绿体基因组的启示
IF 4.7 4区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2024-07-01 DOI: 10.1016/j.chmed.2024.02.003
Ruyu Yao , Bin Wang , Michael Heinrich , Qiuling Wang , Peigen Xiao

Objective

Goji (fruits of Lycium spp.) is commonly consumed as food and medicine. The increasing market demand for goji has led to its wide cultivation and broad breeding, which might cause loss of genetic diversity. This study aims to uncover the genetic diversity of the cultivated and wild Lycium.

Methods

The chloroplast genome (CPG) of 34 accessions of Chinese food-medicinal Lycium spp., including the popular cultivars and their wild relatives, was re-sequenced and assembled, based on which the genetic diversity was evaluated.

Results

Sequence structural comparison shows that CPG is comparatively conserved within species. Phylogenetic analysis indicates that CPG is sufficient for the discrimination of Lycium species; combined with nuclear ribosomal internal transcribed spacer (Nr ITS) sequences, materials with mixed genetic backgrounds can be identified. Nucleotide diversity analysis reveals that the modern cultivars are probably with a common maternal parent, while the wild accessions are with higher level of genetic diversity.

Conclusion

For the first time this study reveals the intraspecies genetic diversity of Lycium spp. using CPG, highlighting the urgent conservation demand of wild genetic resources of Lycium. Our study also demonstrates that CPG provides crucial evidence for identification of Lycium species with mixed genetic backgrounds and highlights the importance of the wild relatives in genetic diversity conservation. This CPG-based technology will contribute to the sustainable development of medicinal plants broadly.

目标枸杞(枸杞属植物的果实)通常作为食品和药物食用。随着市场对枸杞需求的增加,枸杞被广泛种植和繁育,这可能会导致遗传多样性的丧失。结果序列结构比较表明,CPG在种内相对保守。系统发育分析表明,CPG 足以区分枸杞物种;结合核核糖体内部转录间隔序列(Nr ITS),可以识别具有混合遗传背景的材料。核苷酸多样性分析表明,现代栽培品种可能具有共同的母本,而野生品系则具有较高的遗传多样性。我们的研究还表明,CPG 为鉴定具有混合遗传背景的枸杞物种提供了关键证据,并强调了野生近缘种在遗传多样性保护中的重要性。这项基于 CPG 的技术将为药用植物的可持续发展做出广泛贡献。
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引用次数: 0
Analysis on patents of health care products with substances of medicine food homology in China 中国药食同源保健品专利分析
IF 4.7 4区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2024-07-01 DOI: 10.1016/j.chmed.2024.03.005
Haibo Liu , Yanfeng Wang , Jiali Huang , Zhengqi Dong , Peigen Xiao

Objective

The concept of substances of medicine food homology (SMFH) has garnered significant attention in recent years. This study conducts a systematic analysis of patent literature related to SMFH, and elucidates the development trends, technical hotspots, and the overall patent protection landscape of SMFH in China over the past two decades.

Methods

The patent search focused on the SMFH varieties as the objects of inquiry, with retrieval conducted in patent databases. Subsequently, the acquired data underwent processing, analysis, and visualization.

Results

While the technical threshold for pharmaceutical applications surpasses that of the food service sector, the former may assume a prominent role in the future. Research and development (R&D) activities in the southeast of China demonstrate robust activity than other regions. Colleges and scientific research institutions exhibit substantial advantages in patent applications compared with individuals and hold greater potential for future development.

Conclusion

The findings of this patent analysis indicate that China’s SMFH industry are presently undergoing a transition from an extensive model to a high-quality model. The quality and technical standards of SMFH products are consistently improving. Consequently, there is a need for more stringent patent application requirements to align with the evolving development needs.

目的 药食同源物质(SMFH)的概念近年来备受关注。本研究对与SMFH相关的专利文献进行了系统分析,阐明了近二十年来SMFH在中国的发展趋势、技术热点以及专利保护的总体情况。方法专利检索以SMFH品种为研究对象,在专利数据库中进行检索,然后对获得的数据进行处理、分析和可视化。结果虽然医药应用的技术门槛超过了餐饮行业,但前者在未来可能会占据重要地位。与其他地区相比,中国东南部地区的研究与开发(R&D)活动十分活跃。与个人相比,高等院校和科研机构在专利申请方面具有较大优势,未来发展潜力较大。SMFH产品的质量和技术标准正在不断提高。因此,有必要制定更严格的专利申请要求,以适应不断发展的需求。
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引用次数: 0
期刊
Chinese Herbal Medicines
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