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Label-free, background-free detection of nucleic acid with immobilization-free heterogeneous biosensor and one-pot hybridization chain reaction amplification 利用无固定化异质生物传感器和单锅杂交链反应扩增技术进行无标记、无背景的核酸检测
Pub Date : 2024-06-20 DOI: 10.1016/j.asems.2024.100115
Hongyan Yang , Zeyu Ma , Dan Zhang , Yi Wang , Lei Li , Guobao Zhou

Although immobilization-free and label-free electrochemical DNA (E-DNA) biosensors have engaged tremendous interest due to their superior properties, such as easy operation, time-saving and cost-saving, most of them are fabricated in homogeneous modes and usually produce high background current. In the present work, we proposed a new immobilization-free and label-free heterogeneous E-DNA assay based on a dual-blocker-aided multibranched hybridization chain reaction (HCR) for one-pot nucleic acid detection with zero background. The target nucleic acid triggers the HCR involving cascaded hybridization between two metastable hairpins, resulting in the generation of HCR products with multibranched arms, which can be captured onto the electrode via π-π stacking interactions between multibranched arms and reduced graphene oxide (rGO). Prior to the incubation process with an electrode, two blockers are designed to prohibit the nonspecific absorption of unreacted hairpin probes. Thus, an immobilization-free and label-free heterogeneous electrochemical assay for one-pot nucleic acid detection with zero background is readily realized. This strategy also presents additional merits of simplicity and cheap cost, since probe immobilization, signal tag labeling, and multiple incubation processes are avoided. Therefore, the as-proposed effective and versatile biosensor has great potential to be applied in nucleic acid-related practical biosensing.

虽然无固定化和无标记的电化学 DNA(E-DNA)生物传感器因其操作简便、省时、省钱等优越性能而备受关注,但它们大多采用均相模式制造,通常会产生较高的背景电流。在本研究中,我们提出了一种基于双阻断剂辅助多分支杂交链反应(HCR)的新型免固定、免标记异构 E-DNA 检测方法,可实现零背景的核酸检测。目标核酸触发的 HCR 涉及两个可转移发夹之间的级联杂交,从而产生具有多分支臂的 HCR 产物,这些产物可通过多分支臂与还原氧化石墨烯(rGO)之间的 π-π 堆叠相互作用被捕获到电极上。在与电极孵育之前,设计了两种阻断剂,以禁止未反应发夹探针的非特异性吸收。这样,一种无固定、无标记的异质电化学分析法就很容易实现了,它可以实现零背景的单次核酸检测。由于避免了探针固定、信号标签标记和多重孵育过程,这一策略还具有操作简单、成本低廉等优点。因此,这种高效、多功能的生物传感器在核酸相关的实用生物传感领域具有巨大的应用潜力。
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引用次数: 0
Optical sensor for BTEX detection: Integrating machine learning for enhanced sensing 用于检测 BTEX 的光学传感器:整合机器学习,增强传感能力
Pub Date : 2024-06-20 DOI: 10.1016/j.asems.2024.100114
Mary Hashemitaheri , Ebrahim Ebrahimi , Geethanga de Silva , Hamed Attariani

Optical sensors provide a fast and real-time approach to detect benzene, toluene, ethylbenzene, and xylenes (BTEX) in environmental monitoring and industrial safety. However, detecting the concentration of a particular gas in a mixture can be challenging. Here, we develop a machine-learning model that can precisely measure BTEX concentrations simultaneously based on an absorption spectroscopy gas sensing system. The convolutional neural network (CNN) is utilized to identify the absorbance spectra for each volatile, along with their concentrations in a mixture. A synthetic data set is generated using a series of physics-based simulations to create the predictive model. The data set consists of the overall absorbance of numerous random BTEX mixtures over time, based on various percentages of the permissible exposure limit (PEL). It is worth noting that benzene has a negligible absorbance (very low PEL, 1–5 ppm) compared to other volatile gases, which makes it difficult to detect. To address this challenge, we introduce a 3-stage solution to accurately discriminate between all BTEX species, regardless of their concentration levels. As a result, the R-squared above 0.99 for toluene, ethylbenzene, and o-xylene, and the R-squared above 0.96 for benzene, is achieved, indicating the model's capability to predict BTEX concentrations.

光学传感器为环境监测和工业安全提供了一种快速、实时检测苯、甲苯、乙苯和二甲苯(BTEX)的方法。然而,检测混合物中特定气体的浓度是一项挑战。在此,我们基于吸收光谱气体传感系统开发了一种机器学习模型,可同时精确测量 BTEX 的浓度。我们利用卷积神经网络(CNN)来识别每种挥发性物质的吸收光谱以及它们在混合物中的浓度。使用一系列基于物理的模拟生成合成数据集,以创建预测模型。该数据集包括大量随机 BTEX 混合物随着时间推移的总体吸光度,基于允许接触限值 (PEL) 的不同百分比。值得注意的是,与其他挥发性气体相比,苯的吸光度可以忽略不计(PEL 很低,1-5 ppm),因此很难检测。为了应对这一挑战,我们引入了一种三阶段解决方案,以准确区分所有 BTEX 种类,而不论其浓度水平如何。结果,甲苯、乙苯和邻二甲苯的 R 方均超过 0.99,苯的 R 方均超过 0.96,表明该模型具有预测 BTEX 浓度的能力。
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引用次数: 0
Mechanical properties modulation and biological applications of DNA hydrogels DNA 水凝胶的机械特性调制和生物应用
Pub Date : 2024-06-19 DOI: 10.1016/j.asems.2024.100113
Yiliu Wang , Yu Zhang , Qi Zhang , Xia Li , Qinglong Yan , Ying Zhu

DNA hydrogels are three-dimensional polymer networks constructed using DNA as the structural building block. Due to the tight binding between hydrophilic groups on DNA chains and water molecules, they exhibit outstanding plasticity and fluid thermodynamic properties, making them one of the best choices for mimicking natural biological tissues. By controlling the backbone building blocks, gelation conditions, and cross-linking methods of DNA hydrogels, hydrogels with different mechanical strengths can be obtained, thus expanding their applications in the field of biology. This review first introduces the relationship between the mechanical properties of DNA hydrogels and their structure, elucidates the approaches and strategies for mechanical property modulation, and focuses on the scheme of controllable design to modulate the mechanical properties of DNA hydrogels for applications in biosensing, cellular function regulation, and bone tissue engineering. Furthermore, this review outlines the future development directions and challenges faced in the mechanical property modulation of DNA hydrogels, providing useful information for the precise design of DNA hydrogels for biological research.

DNA 水凝胶是以 DNA 为结构单元构建的三维聚合物网络。由于 DNA 链上的亲水基团与水分子紧密结合,它们具有出色的可塑性和流体热力学特性,是模拟天然生物组织的最佳选择之一。通过控制 DNA 水凝胶的骨架构建模块、凝胶化条件和交联方法,可以获得不同机械强度的水凝胶,从而拓展其在生物学领域的应用。本综述首先介绍了 DNA 水凝胶的力学性能与其结构之间的关系,阐明了调控力学性能的方法和策略,并重点介绍了调控 DNA 水凝胶力学性能的可控设计方案,以应用于生物传感、细胞功能调控和骨组织工程等领域。此外,本综述还概述了 DNA 水凝胶机械性能调控的未来发展方向和面临的挑战,为生物研究中 DNA 水凝胶的精确设计提供了有用信息。
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引用次数: 0
Progress in ion detection and clinical diagnosis based on G-quadruplex combined with fluorescence properties 基于 G-四链路结合荧光特性的离子检测和临床诊断研究进展
Pub Date : 2024-06-17 DOI: 10.1016/j.asems.2024.100112
Ping Lu, Gerile Aodeng, Jun Ai

G-quadruplex is a high-level structure composed of folded DNA or RNA rich in tandem repeats of guanine (G). In recent years, G-quadruplex is widely used in various fields due to its unique structural properties. This article briefly introduces the structural properties of G-quadruplex, and provides a brief introduction to the research on DNA and RNA G-quadruplex in various detection and medical fields. It is hoped that this can provide some help to readers who want to understand G-quadruplex.

G-quadruplex 是一种由富含串联重复鸟嘌呤(G)的折叠 DNA 或 RNA 组成的高级结构。近年来,G-四叠体因其独特的结构特性被广泛应用于各个领域。本文简要介绍了 G 型四叠体的结构特性,并简要介绍了 DNA 和 RNA G 型四叠体在各种检测和医学领域的研究情况。希望能为想要了解 G-四叠体的读者提供一些帮助。
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引用次数: 0
Development of ratiometric DNA biosensors with improved accuracy, precision, and signal-to-noise ratio 开发具有更高精度、准确性和信噪比的比率 DNA 生物传感器
Pub Date : 2024-05-16 DOI: 10.1016/j.asems.2024.100106
Qing Tao , Yanli Wen , Wen Liang , Lele Wang , Ruiyan Guo , Min Ding , Ming Luo , Juan Yan , Feiyan Gong , Chengming Cao , Lanying Li , Gang Liu

Ratiometric DNA biosensors, which utilize DNA as the recognition element and integrate dual signals from diverse sensing platforms including fluorescence, electrochemistry, and surface-enhanced Raman scattering (SERS), have demonstrated remarkable proficiency in detecting a wide range of targets. In this review, we showcase the significant progress achieved by ratiometric biosensors. Firstly, ratiometric biosensors have made notable advancements in analyzing real samples. These include the analysis of pH values near cancer cells, quantification of miRNA in human cell lysates, detection of human telomerase RNA in cell extracts, and performing DNA logic-gated in situ bioimaging on cell membranes. Secondly, excellent sensitivity has been attained through the utilization of effective amplification methods such as RCA, HCR, and CHA, among others. Thirdly, the construction of stable reference signals has resulted in significantly improved precision for ratiometric biosensors. This breakthrough has overcome matrix effects, enabling reliable detection in real samples with high selectivity. This review provides a comprehensive overview of recent advancements in strategies employed by ratiometric DNA biosensors. We present three types of biosensors based on distinct sensing platforms: fluorescent, electrochemical, and SERS biosensors. Additionally, we discuss future directions and primary challenges in the development of ratiometric DNA biosensors.

DNA 比率生物传感器利用 DNA 作为识别元件,整合了来自荧光、电化学和表面增强拉曼散射(SERS)等不同传感平台的双重信号,在检测各种目标物方面表现出了非凡的能力。在本综述中,我们将展示比率计量生物传感器所取得的重大进展。首先,比率测量生物传感器在分析真实样品方面取得了显著进步。其中包括分析癌细胞附近的 pH 值、定量人类细胞裂解液中的 miRNA、检测细胞提取物中的人类端粒酶 RNA 以及在细胞膜上进行 DNA 逻辑门控原位生物成像。其次,通过使用 RCA、HCR 和 CHA 等有效的扩增方法,实现了极高的灵敏度。第三,稳定参考信号的构建大大提高了比率测量生物传感器的精度。这一突破克服了基质效应,实现了对真实样品的可靠检测和高选择性。本综述全面概述了比率测量 DNA 生物传感器所采用策略的最新进展。我们介绍了基于不同传感平台的三种生物传感器:荧光、电化学和 SERS 生物传感器。此外,我们还讨论了比率测量 DNA 生物传感器的未来发展方向和主要挑战。
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引用次数: 0
Unveiling the synthesis, characteristics, electrical conductivity, photocatalytic activity, and electrochemical activity of eco-friendly zinc oxide nanoparticles 揭示环保型纳米氧化锌的合成、特性、导电性、光催化活性和电化学活性
Pub Date : 2024-05-15 DOI: 10.1016/j.asems.2024.100105
Redwanul Islam , Suprio Shantanu Saha , Reana Raen , Nayeemul Islam , Torikul Islam

The Nigella Sativa seeds were utilized for the environment-friendly zinc oxide nanoparticles (ZnO NPs), as evident by the observation of a white precipitate. Numerous analytical techniques, such as XRD, FTIR, UV–vis, SEM, and EDX, were utilized to describe the specimen's structural, optical, and electrical properties. XRD analysis was used to confirm that the ZnO NPs were crystalline. An absorbance peak at 401 nm was observed in the UV–vis, indicating that the ZnO NPs have a 2.91 eV bandgap. Functional groups are present in ZnO NPs, as seen by the FTIR graph. The nanoparticles' spherical form and average size of 37.9 nm were confirmed by the SEM image. EDX analysis confirmed the composition of the nanoparticles, with zinc accounting for 73.17% and oxygen for 26.83%. ZnO NPs demonstrated excellent electrical conductivity because of their higher surface-to-volume ratio. Additionally, the synthesis of ZnO NPs exhibited effective degradation of methylene blue dye. These results point to potential applications in several domains, including electronics, biomedical devices, industry, and agriculture, and they call for immediate follow-up research.

从观察到的白色沉淀可以看出,Nigella Sativa 种子被用于制造环保型氧化锌纳米粒子(ZnO NPs)。我们利用 XRD、FTIR、UV-vis、SEM 和 EDX 等多种分析技术来描述试样的结构、光学和电学特性。XRD 分析用于确认氧化锌纳米粒子是晶体。在紫外可见光谱中,在 401 纳米处观察到一个吸光峰,表明氧化锌氮氧化物具有 2.91 eV 的带隙。从傅立叶变换红外光谱图中可以看出,氧化锌纳米粒子中含有官能团。扫描电镜图像证实了纳米粒子呈球形,平均尺寸为 37.9 纳米。EDX 分析证实了纳米颗粒的成分,其中锌占 73.17%,氧占 26.83%。ZnO NPs 具有较高的表面体积比,因此具有出色的导电性。此外,合成的 ZnO NPs 还能有效降解亚甲基蓝染料。这些结果表明,ZnO NPs 在电子、生物医学设备、工业和农业等多个领域都有潜在的应用前景,需要立即开展后续研究。
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引用次数: 0
Three-in-one DNA nanowheels for simultaneous tumor regression and drug resistance prevention in breast cancer model 在乳腺癌模型中同时实现肿瘤消退和抗药性预防的三合一 DNA 纳米轮
Pub Date : 2024-05-13 DOI: 10.1016/j.asems.2024.100104
Ping Li , Chun-Feng Feng , Peng-Fei Lyu , Fei Liu , Hui-Sheng Li , Li-Qun Zhang

Herein, we proposed novel three-in-one DNA nanowheels with simultaneous chemo and gene therapy to treat tumor, especially to prevent simultaneous drug resistance, which could be disassembled via a cascaded hybridization reactions triggered by the highly expressed microRNA in cancer cells for smart and efficient cancer therapy. Typically, with breast cancer as a model, microRNA 21 could trigger the self-disassembly of DNA nanowheel 1 via hybridization with a specially designed oligonucleotide (anti-microRNA 21) in DNA nanowheel 1, releasing another special oligonucleotide (Contact sequence) to trigger the self-disassembly of DNA nanowheel 2 with releasing of a special oligonucleotide (anti-Contact sequence) to trigger the self-disassembly of DNA nanowheel 1 cyclically, and thus the cascaded hybridization reactions with three-in-one anti-cancer functions could be generated based on three main therapeutic effects via releasing doxorubicin to inhibit macromolecular biosynthesis, antisense oligonucleotide of microRNA 21 to activate the apoptotic cell pathway and antisense oligonucleotide of MDR1 to prevent the drug resistance respectively. As expected, the proposed method showed improved therapeutic efficacy on the cancer cells with about 80% apoptosis ratio, especially on the drug resistant cancer cells with about 75% apoptosis ratio, compared with that in the conventional anti-cancer systems of about 70% on cancer cells and below 40% on drug resistant cancer cells, respectively. Most importantly, this strategy opened the door for generation of complex functional DNA-based structures for target triggering drugs releasing system combining with chemo- and gene-therapy to generate tumor regression and prevent drug resistance with an optimized therapeutic efficacy, providing a new avenue for efficient cancer treatment, especially drug resistant cancers.

在此,我们提出了新型三合一DNA纳米轮,可同时进行化疗和基因治疗以治疗肿瘤,特别是防止同时产生耐药性,该纳米轮可通过癌细胞中高表达的microRNA引发的级联杂交反应进行分解,从而实现智能高效的癌症治疗。通常情况下,以乳腺癌为例,microRNA 21 可以通过与 DNA 纳米轮 1 中特殊设计的寡核苷酸(抗 microRNA 21)杂交触发 DNA 纳米轮 1 的自组装,释放另一种特殊寡核苷酸(接触序列)触发 DNA 纳米轮 2 的自组装,同时释放一种特殊寡核苷酸(抗接触序列)循环触发 DNA 纳米轮 1 的自组装、通过释放抑制大分子生物合成的多柔比星、激活细胞凋亡途径的 microRNA 21 反义寡核苷酸和防止耐药性的 MDR1 反义寡核苷酸,分别产生具有三合一抗癌功能的级联杂交反应。正如预期的那样,与传统抗癌系统对癌细胞的凋亡率约为 70% 和对耐药癌细胞的凋亡率低于 40% 相比,该方法对癌细胞的疗效有所提高,凋亡率约为 80%,尤其是对耐药癌细胞的凋亡率约为 75%。最重要的是,这种策略为生成复杂的 DNA 功能结构靶向触发药物释放系统打开了一扇大门,它与化疗和基因治疗相结合,以优化的疗效产生肿瘤消退和防止耐药性,为高效治疗癌症,尤其是耐药性癌症提供了一条新途径。
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引用次数: 0
Pencil drawn interdigitated capacitive sensors on wood substrate 铅笔绘制的木质基底互嵌电容式传感器
Pub Date : 2024-04-22 DOI: 10.1016/j.asems.2024.100103

This research presents the fabrication and characterization of an interdigitated capacitive (IDC) sensor on a wooden substrate using pencil traces. The resistance of the pencil traces decreased from 100 kΩ to 5 kΩ as the pencil grade shifted from HB to 8B. Concurrently, capacitance measurements revealed an increase from approximately 5 pF for a 5-finger IDC made with HB pencil to around 32 pF for an 8B pencil counterpart. Increasing the number of pencil traces from 10 to 50 resulted in a significant decrease in resistance and a proportional increase in capacitance. Application of the IDC sensor demonstrated notable changes in capacitance upon proximity and touch, with a significant decrease upon removal. The interdigitated capacitance sensor exhibits good proximity effects and contact sensitivity in touch, with capacitance increasing exponentially from 0.3 pF (7 cm) to 1.2 pF (direct contact), highlighting its ability to detect objects with high precision. Additionally, environmental factors such as temperature and humidity influence capacitance values. These findings underscore the potential of pencil-drawn IDC sensors for responsive and adaptable applications in various fields.

本研究介绍了在木质基板上使用铅笔迹线制作互插电容式(IDC)传感器并对其进行表征。随着铅笔等级从 HB 到 8B,铅笔痕迹的电阻从 100 kΩ 下降到 5 kΩ。同时,电容测量显示,使用 HB 铅笔制作的 5 指 IDC 的电容从约 5 pF 增加到 8B 铅笔的约 32 pF。铅笔线迹数量从 10 条增加到 50 条后,电阻显著下降,电容也成比例增加。IDC 传感器的应用表明,在接近和触摸时电容会发生显著变化,而移除后电容则会明显减小。互斥电容传感器在触摸时表现出良好的接近效应和接触灵敏度,电容值从 0.3 pF(7 厘米)呈指数增长到 1.2 pF(直接接触),突出了其高精度检测物体的能力。此外,温度和湿度等环境因素也会影响电容值。这些发现凸显了铅笔绘制的 IDC 传感器在各个领域的反应灵敏、适应性强的应用潜力。
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引用次数: 0
Evaluating the impact of delayed centrifugation on protein profiles analyzed by LC/MS in serum and plasma samples 评估延迟离心对通过 LC/MS 分析血清和血浆样本中蛋白质概况的影响
Pub Date : 2024-04-15 DOI: 10.1016/j.asems.2024.100101
Jingyi Si , Yifan Gao , Binjian Yan , Xizhong Shen , Changfeng Zhu , Qunyan Yao

The pre-analytical steps in blood-based liquid biopsy, involving sample collection techniques and storage conditions, play a critical role in ensuring the integrity and reliability of collected samples. These steps have a directly impact on the accuracy and reliability of test results and are therefore of utmost importance. Mass spectrometry (MS)-based proteomics is an exceptionally powerful tool in the field of liquid biopsy. It enables the comprehensive analysis of the protein content within biological specimens, providing valuable insights into the underlying mechanisms and pathogenesis of diseases. In this study, we aim to explore the variations in the protein landscape between serum and plasma specimens and evaluate the impact of delayed centrifugation on LC/MS-analyzed protein profiles. We seek to provide recommendations on optimal pre-analytical protocols for MS-based proteomics studies. This will enhance the accuracy and reliability of liquid biopsy for precision medicine, ultimately leading to improved patient outcomes.

血液液体活检的分析前步骤涉及样本采集技术和储存条件,在确保采集样本的完整性和可靠性方面起着至关重要的作用。这些步骤直接影响检测结果的准确性和可靠性,因此至关重要。在液体活检领域,基于质谱(MS)的蛋白质组学是一种非常强大的工具。它能对生物标本中的蛋白质含量进行全面分析,为了解疾病的潜在机制和发病机理提供有价值的见解。在本研究中,我们旨在探索血清和血浆标本中蛋白质含量的变化,并评估延迟离心对 LC/MS 分析蛋白质图谱的影响。我们试图为基于 MS 的蛋白质组学研究提供最佳分析前方案建议。这将提高液体活检在精准医疗中的准确性和可靠性,最终改善患者的预后。
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引用次数: 0
Heteroatom self-doped graphitic carbon materials from Sargassum thunbergii with improved supercapacitance performance 具有更好超级电容性能的马尾藻自掺杂杂原子石墨碳材料
Pub Date : 2024-04-12 DOI: 10.1016/j.asems.2024.100102
Hui Xu , Lina Dong , Bing Zhang , Kun Wang , Jiafeng Meng , Yanwei Tong , Hua Wang

It is well-known that high specific surface area and improved pore structure is significantly desired for the application of supercapacitor based on biomass-based activated carbon. Herein, Sargassum thunbergii was selected as carbon precursor. Then, a simple and environmentally friendly method was designed to synthesize heteroatom self-doped porous carbon materials via synchronous activation and graphitization by using K2FeO4. Our results demonstrated that activation temperature plays an important role in porous structure, morphology, and degree of graphitization, thus affecting the performance of supercapacitance. Sargassum thunbergii-based graphitized porous carbons STGPC-2 sample (calcination temperature at 700 °C) has a large specific surface area (1641.98 m2 g−1), pore volume (0.91 cm3 g−1), high microporosity (Vmicro = 0.62 cm3 g−1, more than 68%), and a certain degree of graphitization. In three-electrode system, The STGPC-2 electrode exhibited a high specific capacitance of 325.5 F g−1 at 0.5 A g−1 and displays high rate capability (248 F g−1 at 10 A g−1 in 6 M KOH electrolyte). The symmetric STGPC-2 supercapacitor exhibits energy density as high as 21.3 Wh kg−1 (at a power density of 450 W kg−1) and excellent long-term cycling stability (97% capacitance retention after 3000 cycles) in 1 M Na2SO4 electrolyte.

众所周知,高比表面积和改进的孔隙结构是应用基于生物质的活性炭的超级电容器的重要要求。本文选择马尾藻作为碳前驱体。然后,设计了一种简单、环保的方法,利用 K2FeO4 通过同步活化和石墨化合成杂原子自掺杂多孔碳材料。我们的研究结果表明,活化温度对多孔结构、形态和石墨化程度起着重要作用,从而影响超级电容的性能。马尾藻石墨化多孔碳 STGPC-2 样品(煅烧温度为 700 ℃)具有较大的比表面积(1641.98 m2 g-1)、孔体积(0.91 cm3 g-1)、较高的微孔率(Vmicro = 0.62 cm3 g-1,超过 68%)和一定的石墨化程度。在三电极系统中,STGPC-2 电极在 0.5 A g-1 的条件下显示出 325.5 F g-1 的高规格电容,并显示出较高的速率能力(在 6 M KOH 电解液中 10 A g-1 的条件下为 248 F g-1)。对称 STGPC-2 超级电容器的能量密度高达 21.3 Wh kg-1(功率密度为 450 W kg-1),在 1 M Na2SO4 电解液中具有出色的长期循环稳定性(3000 次循环后电容保持率为 97%)。
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引用次数: 0
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Advanced Sensor and Energy Materials
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