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RNA-Based Biopesticides: Pioneering Precision Solutions for Sustainable Aquaculture in China 基于rna的生物农药:中国可持续水产养殖的开创性精准解决方案
Pub Date : 2025-02-17 DOI: 10.1002/aro2.70000
Yiran Huang, Yingmin Dai, Zhuotong Huang, Mengqi Zhang, Lijun Xiu, Xianhui Zhang, Youyu Zhang, Lixing Huang

RNA-based biopesticides, heralding the third revolution in agricultural pest and disease control, emerge as pivotal for sustainable aquaculture in China. This review delves into the background, evolution, and applications of RNA biopesticides, emphasizing their transformative impact on aquaculture disease management. RNA-based biopesticides offer myriad advantages. Utilizing dsRNA formulations ensures species-specific targeting, thereby minimizing effects on nontarget organisms. Swift environmental degradation of dsRNA addresses concerns about residual effects and pollution. Crucially, the host’s genetic structure remains unchanged, averting heritable variations. Additionally, resistance challenges are easily mitigated through targeted gene replacement. Nevertheless, challenges impede the technology’s full potential. Factors such as target gene selection, varying effectiveness across pests, and susceptibility of dsRNA to pathogen degradation can influence overall efficacy. The widespread use of RNA pesticides prompts scrutiny of their impact on nontarget organisms’ immune systems, necessitating meticulous consideration of exogenous dsRNA biosafety. Furthermore, assessing the toxicity of viruses and microorganisms as dsRNA carriers is crucial. High production costs and lower efficiency in large-scale production compared to conventional pesticides demand urgent attention. Future research should prioritize the optimization of dsRNA delivery systems to improve stability and targeting precision. Investigating the integration of RNA-based pesticides with other sustainable agricultural practices may further mitigate environmental impacts. Moreover, advancements in cost-effective production techniques and regulatory frameworks will be critical for enabling the widespread adoption of RNA biopesticides, thereby securing their role in the future management of global aquaculture diseases.

以rna为基础的生物农药,预示着农业病虫害防治的第三次革命,成为中国可持续水产养殖的关键。本文综述了RNA生物农药的背景、发展和应用,强调了它们对水产养殖疾病管理的变革性影响。基于rna的生物农药有无数的优势。利用dsRNA配方确保物种特异性靶向,从而最大限度地减少对非目标生物的影响。dsRNA在环境中的快速降解引起了人们对其残留效应和污染的关注。关键是,寄主的遗传结构保持不变,避免了遗传变异。此外,抗性挑战很容易通过靶向基因替换得到缓解。然而,挑战阻碍了这项技术的充分潜力。靶基因选择、不同害虫的不同效果以及dsRNA对病原体降解的易感性等因素都可能影响总体效果。RNA农药的广泛使用促使人们仔细研究它们对非目标生物免疫系统的影响,因此需要仔细考虑外源性dsRNA的生物安全性。此外,评估病毒和微生物作为dsRNA载体的毒性至关重要。与常规农药相比,规模化生产成本高,效率低,亟待关注。未来的研究应优先优化dsRNA传递系统,以提高稳定性和靶向精度。研究rna农药与其他可持续农业实践的结合可以进一步减轻对环境的影响。此外,成本效益高的生产技术和管理框架的进步对于广泛采用RNA生物农药至关重要,从而确保它们在未来全球水产养殖疾病管理中的作用。
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引用次数: 0
Genomic Evaluation of Recombination in Small Highly Inbred Beef Cattle Populations 高度自交系肉牛小群体重组的基因组评估
Pub Date : 2025-02-17 DOI: 10.1002/aro2.103
E. Hay, A. S. Ling

Meiotic recombination is key for genetic diversity, but its dynamics are underexplored in small inbred beef cattle populations. This study examines recombination in closed beef cattle populations and identifies related genomic regions. Using genotypic data from 1020 Line 1 Hereford and 3420 Composite Gene Combination (CGC) cattle, recombination rates were estimated through offspring and progenitor haplotypes. The CGC composite displayed a higher recombination rate (27.24 events) than the Line 1 population (26.38 events), with reduced rates in Line 1 potentially due to extended homozygous segments. Recombination varied by autosome length, increasing with longer autosomes. A genome-wide association study revealed novel genomic regions associated with recombination: significantly associated SNP markers were found on Bos taurus autosome (BTA) 1, 7, 13, 15, and 19 in the Line 1 population, and numerous others in the CGC population, indicating complex polygenic influences.

减数分裂重组是遗传多样性的关键,但其动态在小型近交系肉牛种群中尚未得到充分研究。本研究考察了封闭肉牛种群中的重组,并确定了相关的基因组区域。利用1020系1赫里福德牛和3420系复合基因组合(CGC)牛的基因型数据,通过后代和祖先单倍型估计重组率。CGC组合显示出更高的重组率(27.24个事件),高于1号系群体(26.38个事件),1号系的重组率可能由于纯合片段的延长而降低。重组随常染色体长度而变化,随常染色体长度的增加而增加。一项全基因组关联研究揭示了与重组相关的新基因组区域:在1号系人群的牛常染色体(BTA) 1、7、13、15和19上发现了显著相关的SNP标记,在CGC人群中也发现了许多其他SNP标记,表明复杂的多基因影响。
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引用次数: 0
Cattle Genomics: Aurochs Admixture in East Asia 牛基因组学:东亚的美洲野牛杂交
Pub Date : 2025-02-12 DOI: 10.1002/aro2.102
James A. Ward, David E. MacHugh
<p>The genetic origins and dispersal of domesticated cattle, in common with other livestock species, is getting increasingly complex the closer we look [<span>1, 2</span>]. This trend has accelerated over the last decade, particularly through comparative analyses of whole-genome sequence (WGS) data sets (paleogenomes) generated using ancient DNA (aDNA) from the extinct wild aurochs (<i>Bos primigenius</i>), the progenitor of modern cattle populations [<span>3-7</span>]. These and other high-resolution population genomics studies of domestic cattle have led to a reappraisal of simple models for understanding cattle genetic origins, domestication, and diversity, which developed from the first surveys of maternally inherited mitochondrial DNA (mtDNA) in modern and ancient cattle [<span>8-10</span>]. In a similar fashion to our more nuanced understanding of recent human evolution and the evidence for gene flow from archaic hominins [<span>11</span>], it is now clear that nuclear genomic introgression from wild aurochsen populations during the Holocene has had a significant impact on the ancestry of modern cattle breeds. The rich landscape of cattle genetic and phenotypic diversity across the globe does not derive solely from the small number of domestication centres in Southwest Asia that gave rise to modern humpless taurine (<i>Bos taurus</i>), humped indicine (<i>Bos indicus</i>), and <i>B</i>. <i>taurus</i> × <i>B</i>. <i>indicus</i> hybrid populations.</p><p>Recently published work from Jiawen Hou and her colleagues provides important new insights into the biogeography of <i>B</i>. <i>primigenius</i> and adds to the growing body of evidence for aurochs admixture in East Asian cattle [<span>12</span>]. Bovine archeological material representing 59 specimens collected from the Songnen Plain in Northeast China and from the Qinghai–Tibet Plateau (QTP), was used to generate paleogenomic data for 16 different aurochsen, which were radiocarbon dated to between 3.7 and 37.0 kya (thousand years ago). These data sets were integrated with previously published paleogenomes from 74 ancient wild and domestic cattle [<span>6, 7, 13</span>] plus WGS data from almost 200 modern cattle (taurine, indicine, and hybrid) and related species. Mitochondrial genomic diversity and phylogeography was also examined using more than 200 mitogenomes from ancient and modern cattle and several outgroup species.</p><p>Comparative phylogenetic analysis of the East Asian aurochs mitogenomes revealed that the mtDNA haplotypes possessed by all 16 Songnen Plain and QTP aurochsen are representative of the “C” haplogroup, which is an outgroup (with the K haplogroup) to all non-indicine <i>B</i>. <i>primigenius</i> haplogroups (P, Q, R, and T), splitting from these other mtDNA lineages approximately 150 kya. Hou et al. propose that this observation, coupled with a comparable nuclear genomic divergence, provides support for the taxonomic classification of the East Asian aurochs as a subsp
驯化牛的遗传起源和传播,与其他家畜物种一样,我们越仔细观察,就越复杂[1,2]。这一趋势在过去十年中加速了,特别是通过对全基因组序列(WGS)数据集(古基因组)的比较分析,这些数据集(古基因组)是使用来自已灭绝的野生野牛(Bos primigenius)的古代DNA (aDNA)生成的,野牛是现代牛种群的祖先[3-7]。这些和其他高分辨率家畜种群基因组学研究导致了对理解牛的遗传起源、驯化和多样性的简单模型的重新评估,这些模型是从对现代和古代牛的母系遗传线粒体DNA (mtDNA)的首次调查中发展起来的[8-10]。与我们对近代人类进化的更细致的理解和古人类基因流动的证据类似,现在很清楚的是,全新世野生原始人种群的核基因组渗入对现代牛品种的祖先产生了重大影响。全球牛遗传和表型多样性的丰富格局并不仅仅来自西南亚的少数驯化中心,这些驯养中心产生了现代无驼峰牛磺酸(Bos taurus)、驼峰牛磺酸(Bos indicus)和牛牛B. taurus ×牛B. indicus杂交种群。侯佳雯和她的同事最近发表的研究成果为研究原始牛的生物地理学提供了重要的新见解,并为东亚牛群中野牛混合的证据提供了新的证据。利用从中国东北松嫩平原和青藏高原采集的59个牛标本的考古材料,对16种不同的野牛进行了古基因组数据分析,这些野牛的放射性碳年代在3.7 - 37.0千万年之间。这些数据集与先前发表的74头古代野生和驯养牛的古基因组[6,7,13]以及来自近200头现代牛(牛磺酸牛、籼牛和杂交牛)和相关物种的WGS数据相结合。我们还利用来自古代和现代牛以及几个外群物种的200多个有丝分裂基因组对线粒体基因组多样性和系统地理学进行了研究。对东亚原牛有丝线基因组的比较系统发育分析表明,所有16个松农平原和QTP原牛的mtDNA单倍型均为具有代表性的“C”单倍群,该单倍群是所有非籼稻原牛单倍群(P、Q、R和T)的外群(与K单倍群),与这些其他mtDNA谱系分离约150 kya。侯等人提出,这一观察结果,加上类似的核基因组差异,为东亚原牛作为B. primigenius: B. p. sinensis的亚种的分类分类提供了支持,该分类适用于包括西欧亚原牛,B. p. primigenius的扩展分类;北非野牛,b.p. opisthonomus;南亚原牛,b.p. namadicus——可能是印度原牛的祖先。然而,值得注意的是,这种分类很大程度上是基于化石证据的,随着来自这些地区的原始牛的古基因组数据的收集,这种分类可能会得到实质性的修订。虽然从16个东亚野牛标本中获得的WGS数据提供了相对较小的基因组覆盖率,范围从0.01 ×到1.57 ×不等,但大多数高分辨率种群基因组学分析都可获得至少200万个单核苷酸多态性(snp)的共识数据集,这些数据集中在核基因组上。这项工作最值得注意的结果是,东亚原牛对该地区驯养牛种群的基因组祖先做出了贡献,这与欧亚大陆其他地区的观察结果相一致,为野生原牛与人类饲养的牛之间的驯化后相互作用提供了新的视角[5-7]。例如,来自全新世的东亚原牛显示出与古代家畜的遗传亲缘关系,它们与新石器时代晚期陕西世茂遗址3.9 kya的动物的基因组祖先贡献了约7%。这一结果支持了中国北方驯化种群与野生种群之间基因流动发生在4千年前的假设[3,13,14]。对基因流动和混合的进一步分析,也包括对QTP上发掘的3个Bos个体的早期研究,可追溯到公元前4000年中期,为现代QTP牛品种(昌都、定界、迪庆和玉树)的大量原牛祖先提供了多条统计证据。这是通过互补的方法来证明的,包括共享遗传漂变测试、系统发育网络分析、混合的正式测试和基于模型的祖先估计。 综上所述,这些分析表明,在家畜从西南亚向东迁移后不久,东亚原牛的入侵就开始了。图1提供了全新世早期欧洲、北非和亚洲原牛种群核和线粒体基因组多样性现状的简化说明[3,4,7,12]。随着未来几年野生牛和家畜古基因组数据的积累,QTP和东亚其他地区东亚野牛与家畜混合过程的程度和动态将得到更好的理解。涉及性别偏倚基因流(例如,主要由雄性介导的原牛输入)的基因渗入模型可以使用Y染色体单倍型进行测试,并在更精细的水平上,使用X染色体和常染色体祖先[15]的比较分析进行测试。此外,侯和他的同事对渗入的SNP等位基因进行了初步分析,发现东亚野牛的基因变异与免疫生物学、神经生物学和代谢相关。然而,这些野牛杂交的功能种群基因组学研究最终可以扩展到其他牲畜和伴侣动物物种的平行研究,这些研究已经发现了来自野生同系物的渗入基因和基因组调控元件(GREs),这些基因和调控元件影响了许多重要性状,包括对传染病的抵抗力和对特定环境条件(如高海拔和低氧水平)的适应[16-20]。了解渐渗的野牛基因和GRE变异在驯化牛这些适应性性状的基因组结构中的作用,将对利用基因组选择和基因编辑bb0的未来育种计划具有重要意义。詹姆斯A.沃德:写作-原稿,写作-审查和编辑,概念化,可视化。David E. MacHugh:概念化,写作原稿,资金获取,可视化,写作审查和编辑,项目管理,资源,监督。作者声明无利益冲突。
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引用次数: 0
Genomic Insights Into a Strong Biofilm-Forming Enterococcus faecalis MTR_EFS01 Strain Isolated From a Shrimp in Bangladesh 从孟加拉国虾中分离的强生物膜形成性粪肠球菌MTR_EFS01菌株的基因组分析
Pub Date : 2025-01-27 DOI: 10.1002/aro2.101
Md. Ashek Ullah, Md. Saiful Islam, Md. Liton Rana, Jayedul Hassan, Md. Tanvir Rahman

Enterococcus faecalis is known for its ability to form strong biofilms and its role as an opportunistic pathogen. In this study, we screened and characterized a multidrug-resistant (MDR) and strong biofilm-forming E. faecalis isolate obtained from a shrimp sample to determine its genetic diversity, molecular epidemiology, and underlying factors associated with antimicrobial resistance genes (ARGs) and virulence factor genes (VFGs). The E. faecalis MTR_EFS01 strain was isolated using culturing, staining, and biochemical tests and MALDI-TOF methods. The MDR profile of the strain was determined through the disk diffusion test. The complete genomic sequence of E. faecalis MTR_EFS01 was obtained using the Illumina NextSeq2000 platform. The de novo assembly of the E. faecalis MTR_EFS01 genome revealed a total length of 2,862,301 bp with 80.0 × coverage. This genome comprised 38 contigs, a G + C content of 37.4%, and identified two CRISPR arrays, seven prophages, and 55 RNA genes. The E. faecalis MTR_EFS01 strain was classified as ST862 with a high pathogenicity index of 0.896. The strain harbored eight ARGs conferring resistance to tetracycline, erythromycin, trimethoprim, and MDR efflux pumps. Furthermore, 27 VFGs were identified in this strain, linked to antiphagocytosis, adherence, biofilm formation, enzymes, and immune invasion. Metabolic functional analysis revealed that our strain had 243 subsystems, with the most abundant genes associated with carbohydrate metabolism, amino acids and derivatives, and protein metabolism. The findings in this study underscore the importance of continuous monitoring, research, and collaborative efforts to address the growing threat of MDR and biofilm-forming pathogens in diverse settings.

粪肠球菌以其形成强生物膜的能力和作为机会性病原体的作用而闻名。在这项研究中,我们筛选并鉴定了从虾样本中获得的多药耐药(MDR)和强生物膜形成的粪肠杆菌分离物,以确定其遗传多样性、分子流行病学以及与抗微生物药物耐药性基因(ARGs)和毒力因子基因(vfg)相关的潜在因素。采用培养、染色、生化试验和MALDI-TOF法分离得到粪肠杆菌MTR_EFS01菌株。通过圆盘扩散试验确定了菌株的MDR分布。利用Illumina NextSeq2000平台获得粪肠杆菌MTR_EFS01的全基因组序列。重新组装粪肠杆菌MTR_EFS01基因组,发现总长度为2862301 bp,覆盖率为80.0 ×。该基因组包含38个contigs, G + C含量为37.4%,鉴定出2个CRISPR阵列、7个噬菌体和55个RNA基因。菌株MTR_EFS01分类为ST862,致病性指数为0.896。该菌株含有8种ARGs,对四环素、红霉素、甲氧苄啶和耐多药外排泵具有耐药性。此外,在该菌株中鉴定出27个vfg,这些vfg与抗吞噬、粘附、生物膜形成、酶和免疫入侵有关。代谢功能分析表明,该菌株有243个子系统,其中碳水化合物代谢、氨基酸及其衍生物和蛋白质代谢相关基因最为丰富。本研究的发现强调了持续监测、研究和合作努力的重要性,以应对多种环境中耐多药和生物膜形成病原体日益增长的威胁。
{"title":"Genomic Insights Into a Strong Biofilm-Forming Enterococcus faecalis MTR_EFS01 Strain Isolated From a Shrimp in Bangladesh","authors":"Md. Ashek Ullah,&nbsp;Md. Saiful Islam,&nbsp;Md. Liton Rana,&nbsp;Jayedul Hassan,&nbsp;Md. Tanvir Rahman","doi":"10.1002/aro2.101","DOIUrl":"https://doi.org/10.1002/aro2.101","url":null,"abstract":"<p><i>Enterococcus faecalis</i> is known for its ability to form strong biofilms and its role as an opportunistic pathogen. In this study, we screened and characterized a multidrug-resistant (MDR) and strong biofilm-forming <i>E. faecalis</i> isolate obtained from a shrimp sample to determine its genetic diversity, molecular epidemiology, and underlying factors associated with antimicrobial resistance genes (ARGs) and virulence factor genes (VFGs). The <i>E. faecalis</i> MTR_EFS01 strain was isolated using culturing, staining, and biochemical tests and MALDI-TOF methods. The MDR profile of the strain was determined through the disk diffusion test. The complete genomic sequence of <i>E. faecalis</i> MTR_EFS01 was obtained using the Illumina NextSeq2000 platform. The de novo assembly of the <i>E. faecalis</i> MTR_EFS01 genome revealed a total length of 2,862,301 bp with 80.0 × coverage. This genome comprised 38 contigs, a G + C content of 37.4%, and identified two CRISPR arrays, seven prophages, and 55 RNA genes. The <i>E. faecalis</i> MTR_EFS01 strain was classified as ST862 with a high pathogenicity index of 0.896. The strain harbored eight ARGs conferring resistance to tetracycline, erythromycin, trimethoprim, and MDR efflux pumps. Furthermore, 27 VFGs were identified in this strain, linked to antiphagocytosis, adherence, biofilm formation, enzymes, and immune invasion. Metabolic functional analysis revealed that our strain had 243 subsystems, with the most abundant genes associated with carbohydrate metabolism, amino acids and derivatives, and protein metabolism. The findings in this study underscore the importance of continuous monitoring, research, and collaborative efforts to address the growing threat of MDR and biofilm-forming pathogens in diverse settings.</p>","PeriodicalId":100086,"journal":{"name":"Animal Research and One Health","volume":"3 4","pages":"379-388"},"PeriodicalIF":0.0,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aro2.101","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145470173","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Haemato-biochemistry, erythromorphology, and histopathology of Oreochromis niloticus as influenced by Aeromonas hydrophila infection and florfenicol therapy 嗜水气单胞菌感染和氟苯尼考治疗对尼罗褐蝽血液生化、红细胞形态和组织病理学的影响
Pub Date : 2025-01-02 DOI: 10.1002/aro2.100
Joshi Sharon, Thangapalam Jawahar Abraham, Arya Sen, Ratnapriya Das, Priyanka Sinha, Satyanarayana Boda, Prasanna Kumar Patil

Aeromonas hydrophila infection is one of the key factors limiting tilapia production, and antibiotics play important roles in the control of diseases. This study evaluated the effectiveness of florfenicol (FFC) when administered orally at the therapeutic dose of 15 mg/kg fish biomass/day for 10 days against A. hydrophila infection in Oreochromis niloticus in terms of survival, changes in haemato-biochemistry, erythrocyte morphology, and histoarchitecture of the vital organs. A. hydrophila was moderately virulent to tilapia with an LD50 of 1.15 × 107 cells/fish. When challenged, it caused systemic infection in fish. The challenged fish were lethargic, wandered around the corners, rested at the bottom, swam vertically, and darkly pigmented. The FFC therapy effectively reduced bacteria-induced mortalities and physiological stress as the measured haemato-biochemical parameters indicated. The histopathological findings suggested alterations in tissue architecture of the kidney and liver tissues, which improved in the treated fish. Erythrocytes of the challenged fish showed elongated, irregular-shaped, tear-drop-shaped, crenated, and hypochromic erythrocytes, ragged cytoplasmic membranes, vacuolation, hypertrophied nucleus, and eccentric nucleus. These morphological alterations were reduced with FFC therapy. Compared to the untreated group, the FFC treatment normalized the haemato-biochemical parameters, improved wound healing, and promoted fish recovery against bacterial infections. The results hinted at the effectiveness of FFC against A. hydrophila infection in O. niloticus juveniles at the therapeutic dose. However, care must be taken for its judicious aquacultural application to avoid its negative impacts on fish, the environment, and consumers.

嗜水气单胞菌感染是制约罗非鱼生产的关键因素之一,抗生素在病害防治中起着重要作用。本研究评估了氟苯尼考(FFC)以15 mg/kg鱼生物量/天的治疗剂量口服,连续10天对抗尼罗褐口鱼(Oreochromis niloticus)嗜水单胞菌感染的有效性,包括存活、血液生化、红细胞形态和重要器官组织结构的变化。嗜水单胞菌对罗非鱼有中等毒力,LD50为1.15 × 107个细胞/条。当受到挑战时,它会引起鱼类的全身感染。受到挑战的鱼无精打采,在角落里游荡,在水底休息,垂直游动,肤色黝黑。血液生化指标显示,FFC治疗有效降低了细菌引起的死亡率和生理应激。组织病理学结果表明,肾脏和肝脏组织的组织结构发生了变化,在处理过的鱼中有所改善。致毒鱼红细胞呈细长、不规则、泪滴状、圆齿状、低色红细胞,胞膜粗糙,空泡化,细胞核肥大,细胞核偏心。这些形态学改变在FFC治疗后有所减少。与未治疗组相比,FFC治疗使血液生化参数正常化,改善了伤口愈合,促进了鱼类对细菌感染的恢复。结果提示,在治疗剂量下,FFC对niloticus幼鱼的嗜水单胞菌感染有一定的抑制作用。然而,必须注意其明智的水产养殖应用,以避免其对鱼类、环境和消费者的负面影响。
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引用次数: 0
Decoding regulatory programs underlying placode and dermal condensate cell fate commitment during hair follicle induction via single-cell multi-omics analysis 通过单细胞多组学分析解码毛囊诱导过程中基板和真皮凝聚细胞命运承诺的调控程序
Pub Date : 2024-12-23 DOI: 10.1002/aro2.99
Fang Li, Minghao Li, Tongtong Zhang, Menghua Sui, Hasan Khatib, Xin Wang

Understanding differences in chromatin state and changes in gene regulatory landscape of placode (Pc) and dermal condensate are crucial for decoding hair follicle (HF) morphogenesis programs. To identify cell-type-specific chromatin accessibility patterns in the developing HF, we integrated chromatin accessibility and transcriptome profiles at single-cell resolution during the murine HF induction stage. We applied unbiased analyses to identify seven major HF cell types and reclustered dermal (Der) and epithelium (Epi) subtypes to trace their cell fate specification. Our analysis showed that gene regulation in Der and Epi lineages is largely determined by cis-regulatory elements that direct gene expression in response to specific developmental cues. The chromatin accessibility of Twist2, Enpp2, Dkk1, and Sox2 varied from fibroblasts (Fb) to pre-DC lineage, while that of Edar, Lhx2, and Wnt10b varied from Epi to Pc lineage. Cell-type-specific enrichment of transcription factor binding motifs implicated Twist2 and Nfatc4 as key regulators in Fb to pre-DC fate specification, and Fos, Bach1, and Klf1 in Epi to Pc niche fate specification. Additionally, alignment of cell-type-specific peaks to super-enhancer databases identified key regulatory elements in both lineages. We identified and validated the critical cis-regulatory elements in pre-DC and Pc fate specifications through embryonic dorsal skin culture in vitro, suggesting that these elements may regulate critical genes essential for HF induction. Overall, our results provide a foundation for a comprehensive analysis of gene regulatory programs that initiate HF development, offering insights into the molecular mechanism of HF morphogenesis and clinical treatments of alopecia by skin grafts.

了解染色质状态的差异以及基板(Pc)和真皮凝析液基因调控景观的变化对于解码毛囊(HF)形态发生程序至关重要。为了确定发育中的HF中细胞类型特异性的染色质可及性模式,我们在小鼠HF诱导阶段在单细胞分辨率下整合了染色质可及性和转录组谱。我们应用无偏分析鉴定了7种主要的HF细胞类型,并重新聚集真皮(Der)和上皮(Epi)亚型,以追踪它们的细胞命运规范。我们的分析表明,Der和Epi谱系中的基因调控在很大程度上是由顺式调控元件决定的,顺式调控元件根据特定的发育线索指导基因表达。Twist2、Enpp2、Dkk1和Sox2的染色质可及性从成纤维细胞(Fb)到dc前谱系有所不同,而Edar、Lhx2和Wnt10b的染色质可及性从Epi到Pc谱系有所不同。转录因子结合基序的细胞类型特异性富集表明,Twist2和Nfatc4是Fb到dc前命运规范的关键调节因子,Fos、Bach1和Klf1是Epi到Pc生态位命运规范的关键调节因子。此外,将细胞类型特异性峰与超级增强子数据库比对,确定了两个谱系中的关键调控元件。我们通过体外胚胎背皮肤培养鉴定并验证了dc前和Pc命运规范中的关键顺式调控元件,表明这些元件可能调节HF诱导所必需的关键基因。总的来说,我们的研究结果为全面分析HF发展的基因调控程序提供了基础,为HF形态发生的分子机制和皮肤移植对脱发的临床治疗提供了见解。
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引用次数: 0
Determination of selenium speciation in the muscle, kidney, and liver from different animals treated with different selenium supplements by HPLC-ICP-MS 用HPLC-ICP-MS测定不同硒处理动物肌肉、肾脏和肝脏中硒的形态
Pub Date : 2024-12-16 DOI: 10.1002/aro2.97
Xiaoqing Guo, Xueting Jia, Kai Zhang, Chaohua Tang, Xueyang Si, Bo He, Manus Carey, Lynda S. Perkins, Qingyu Zhao, Junmin Zhang

Dietary selenium (Se) deficiency is recognized as a global problem, and exogenous Se supplementation can effectively enrich its levels in animal bodies. Offal tissues are equally important as meat in Se enrichment. Varying properties among Se species require information beyond total Se concentration to fully evaluate health risk/benefits. In the present study, the reliable inductively coupled plasma mass spectrometry (ICP-MS) and HPLC-ICP-MS methods were optimized to analyze total Se content and Se speciation in the muscle and kidney of sheep, kidney and liver of pig, and liver of chicken after different Se supplementation treatments. The total Se contents in the liver and kidney were higher than in muscle. Five Se species were detected in the muscle, and selenourea was additionally detected in the liver and kidney. Sheep muscle and chicken liver mainly contained selenomethionine, and other tissues mainly contained selenocysteine. As the levels of selenomethionine or selenium-enriched yeast increased in the feed, the proportion of selenomethionine in the sample increased, as well as the proportion of selenocysteine decreased, and almost no inorganic selenium was detected in all tissues. This study has provided insights for analyzing the Se enrichment patterns in tissues, which is significant for understanding the Se metabolism, animal health, and enriching the dietary Se supplementation for humans.

饲粮硒缺乏是公认的全球性问题,外源补充硒可以有效地提高动物体内硒水平。内脏组织在硒富集方面与肉类同等重要。不同种类硒的不同特性需要除总硒浓度以外的信息来充分评估健康风险/益处。本研究优化了电感耦合等离子体质谱(ICP-MS)和高效液相色谱-ICP-MS两种可靠的方法,用于分析不同补硒处理后绵羊肌肉和肾脏、猪肾脏和肝脏以及鸡肝脏中总硒含量和硒形态。肝脏和肾脏的总硒含量高于肌肉。肌肉中检测到5种硒,肝脏和肾脏中也检测到硒脲。绵羊肌肉和鸡肝脏主要含硒代蛋氨酸,其他组织主要含硒半胱氨酸。随着饲料中硒代蛋氨酸或富硒酵母含量的增加,样品中硒代蛋氨酸的比例增加,硒代半胱氨酸的比例降低,所有组织中几乎没有检测到无机硒。本研究为分析硒在组织中的富集规律提供了新的思路,对了解硒代谢、动物健康和丰富人类膳食硒补充具有重要意义。
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引用次数: 0
TRIB3 suppresses milk fatty acids metabolism by inhibiting p-AKT/PPARG signaling in goat mammary epithelial cells TRIB3通过抑制山羊乳腺上皮细胞p-AKT/PPARG信号通路抑制乳脂肪酸代谢
Pub Date : 2024-12-04 DOI: 10.1002/aro2.98
Xinglong Gong, Tan Pan, Tiantian Xiong, Yifan Zhu, Juan J. Loor, Chengming Han, Yifan Li, Huan Lei, Jun Luo, Cong Li

Tribbles pseudokinase 3 (TRIB3) interacts with a variety of proteins and plays a key role in the regulation of glucose metabolism and glycolysis in nonruminants, but whether it has a specific role in goat mammary lipid metabolism has still been kept unknown. In this study, we observed that TRIB3 is highly expressed in the mammary tissues of lactating dairy goats. Overexpressing TRIB3 in goat mammary epithelial cells (GMECs) suppressed the mRNA expression of GPAM, DGAT1, and PLIN1, which are associated with the formation of triacylglycerol and lipid droplets (p < 0.05). The fatty acid-sensitive transcription regulator PPARG was also downregulated. Interfering TRIB3 had the opposite effect and decreased Akt phosphorylation. The TRIB3 gene influenced fatty acid composition in GMECs, and its overexpression reduced the total concentration of intracellular triacylglycerol (p < 0.01), this response was verified using BODIPY staining. Overall, these data indicated that TRIB3 suppresses milk fatty acids metabolism through inhibiting p-AKT/PPARG signaling in GMECs.

Tribbles pseudokinase 3 (TRIB3)与多种蛋白质相互作用,在非反刍动物的糖代谢和糖酵解调节中起关键作用,但其是否在山羊乳腺脂质代谢中起特定作用尚不清楚。在本研究中,我们观察到TRIB3在哺乳期奶山羊的乳腺组织中高表达。山羊乳腺上皮细胞(gmac)过表达TRIB3可抑制与甘油三酯和脂滴形成相关的GPAM、DGAT1和PLIN1 mRNA的表达(p <;0.05)。脂肪酸敏感转录调控因子PPARG也下调。干扰TRIB3具有相反的效果,并降低Akt磷酸化。TRIB3基因影响gmec中脂肪酸组成,其过表达降低了细胞内甘油三酯的总浓度(p <;0.01),用BODIPY染色证实了这种反应。综上所述,这些数据表明TRIB3通过抑制gmes中p-AKT/PPARG信号传导抑制乳脂肪酸代谢。
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引用次数: 0
Plants, plant-derived compounds, probiotics, and postbiotics as green agents to fight against poultry coccidiosis: A review 植物、植物衍生化合物、益生菌和后益生菌作为防治家禽球虫病的绿色制剂:综述
Pub Date : 2024-11-11 DOI: 10.1002/aro2.96
Pan Chen, Kaili Liu, Taojing Yue, Yanan Lu, Senyang Li, Fuchun Jian, Shucheng Huang

The intestinal tract is the main place for animals to digest food and absorb nutrients, which also serves as the first line of defense against pathogens that invade the internal environment. Therefore, normal intestinal structure and function are essential for animal health. Poultry coccidiosis is an intestinal disease primarily caused by the parasitization of intestinal epithelial cells by protozoa of the genus Eimeria. The occurrence of coccidiosis not only compromises the intestinal integrity of poultry but also increases their disease susceptibility, thus posing a serious threat to the overall health and productivity of poultry. Nowadays, the primary methods for controlling and preventing coccidiosis in poultry are anticoccidial drugs or live oocyst vaccines. However, the use of the former may be associated with problems of resistance and drug residues, while the use of the latter may cause intestinal damage and significantly increase farming costs. For these reasons, it is critical to investigate green, safe, and cost-effective natural alternative strategies such as phytochemicals and probiotics for controlling coccidiosis as well as mitigating the deleterious effects of coccidial infections in production. In this review, we aim to summarize the role, mechanisms, and therapeutic potential of natural products in the treatment of coccidiosis to lay a theoretical foundation for effective coccidiosis control.

肠道是动物消化食物和吸收营养物质的主要场所,也是抵御病原体侵入内环境的第一道防线。因此,正常的肠道结构和功能对动物健康至关重要。家禽球虫病是一种主要由艾美耳球虫属原生动物寄生于肠上皮细胞引起的肠道疾病。球虫病的发生不仅损害了家禽的肠道完整性,而且增加了家禽的疾病易感性,从而对家禽的整体健康和生产能力构成严重威胁。目前,控制和预防家禽球虫病的主要方法是抗球虫药物或活卵囊疫苗。然而,前者的使用可能与耐药性和药物残留问题有关,而后者的使用可能造成肠道损伤并显著增加养殖成本。由于这些原因,研究绿色、安全、具有成本效益的天然替代策略至关重要,如植物化学物质和益生菌,以控制球虫病,并减轻球虫感染在生产中的有害影响。本文就天然产物在球虫病治疗中的作用、机制及治疗潜力进行综述,为球虫病的有效防治奠定理论基础。
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引用次数: 0
The E-volution in swine nutrition: Current perspectives on vitamin E 猪营养中的E-进化:维生素E的最新观点
Pub Date : 2024-11-07 DOI: 10.1002/aro2.93
Yauheni Shastak, Wolf Pelletier

This review provides an in-depth analysis of vitamin E's multifaceted role in swine nutrition, incorporating both traditional insights and contemporary research. It begins with an exploration of vitamin E from an evolutionary perspective, followed by a detailed examination of its absorption, metabolism, and excretion in swine. The review emphasizes the micronutrient's critical functions in swine physiology, particularly its antioxidant properties and its emerging links to epigenetics, which include deoxyribonucleic acid methylation, histone modification, and noncoding ribonucleic acid regulation. The interactions of vitamin E with other dietary components are discussed, along with established nutritional requirements and current recommendations for supplementation. Additionally, the health benefits and performance improvements associated with vitamin E are presented, emphasizing its importance in immune function, growth, and meat quality. Despite extensive research, the review identifies gaps in understanding the bioavailability and long-term impacts of different vitamin E isoforms and supra-nutritional supplementation levels. It concludes with a discussion of research gaps and future directions, particularly the need for studies on the long-term effects of high-dose vitamin E supplementation and the influence of environmental factors on its metabolism. Through this comprehensive synthesis, this study aims to provide a holistic understanding of vitamin E's essential contributions to swine health and nutrition, with the goal of informing better dietary practices and enhancing swine productivity.

这篇综述深入分析了维生素E在猪营养中的多方面作用,结合了传统的见解和当代的研究。它开始与维生素E的探索从进化的角度来看,其次是它的吸收,代谢和猪排泄的详细检查。该综述强调了微量营养素在猪生理中的关键功能,特别是其抗氧化特性及其与表观遗传学的新联系,包括脱氧核糖核酸甲基化,组蛋白修饰和非编码核糖核酸调节。讨论了维生素E与其他膳食成分的相互作用,以及确定的营养需求和目前的补充建议。此外,还介绍了与维生素E相关的健康益处和性能改善,强调了其在免疫功能、生长和肉品质方面的重要性。尽管进行了广泛的研究,但该综述指出,在了解不同维生素E亚型和超营养补充水平的生物利用度和长期影响方面存在差距。最后讨论了研究的空白和未来的发展方向,特别是需要研究高剂量维生素E补充的长期效应和环境因素对其代谢的影响。通过这一综合研究,本研究旨在全面了解维生素E对猪健康和营养的重要贡献,为更好的饮食习惯和提高猪的生产能力提供信息。
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引用次数: 0
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Animal Research and One Health
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