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Genomic Insights Into a Strong Biofilm-Forming Enterococcus faecalis MTR_EFS01 Strain Isolated From a Shrimp in Bangladesh 从孟加拉国虾中分离的强生物膜形成性粪肠球菌MTR_EFS01菌株的基因组分析
Pub Date : 2025-01-27 DOI: 10.1002/aro2.101
Md. Ashek Ullah, Md. Saiful Islam, Md. Liton Rana, Jayedul Hassan, Md. Tanvir Rahman

Enterococcus faecalis is known for its ability to form strong biofilms and its role as an opportunistic pathogen. In this study, we screened and characterized a multidrug-resistant (MDR) and strong biofilm-forming E. faecalis isolate obtained from a shrimp sample to determine its genetic diversity, molecular epidemiology, and underlying factors associated with antimicrobial resistance genes (ARGs) and virulence factor genes (VFGs). The E. faecalis MTR_EFS01 strain was isolated using culturing, staining, and biochemical tests and MALDI-TOF methods. The MDR profile of the strain was determined through the disk diffusion test. The complete genomic sequence of E. faecalis MTR_EFS01 was obtained using the Illumina NextSeq2000 platform. The de novo assembly of the E. faecalis MTR_EFS01 genome revealed a total length of 2,862,301 bp with 80.0 × coverage. This genome comprised 38 contigs, a G + C content of 37.4%, and identified two CRISPR arrays, seven prophages, and 55 RNA genes. The E. faecalis MTR_EFS01 strain was classified as ST862 with a high pathogenicity index of 0.896. The strain harbored eight ARGs conferring resistance to tetracycline, erythromycin, trimethoprim, and MDR efflux pumps. Furthermore, 27 VFGs were identified in this strain, linked to antiphagocytosis, adherence, biofilm formation, enzymes, and immune invasion. Metabolic functional analysis revealed that our strain had 243 subsystems, with the most abundant genes associated with carbohydrate metabolism, amino acids and derivatives, and protein metabolism. The findings in this study underscore the importance of continuous monitoring, research, and collaborative efforts to address the growing threat of MDR and biofilm-forming pathogens in diverse settings.

粪肠球菌以其形成强生物膜的能力和作为机会性病原体的作用而闻名。在这项研究中,我们筛选并鉴定了从虾样本中获得的多药耐药(MDR)和强生物膜形成的粪肠杆菌分离物,以确定其遗传多样性、分子流行病学以及与抗微生物药物耐药性基因(ARGs)和毒力因子基因(vfg)相关的潜在因素。采用培养、染色、生化试验和MALDI-TOF法分离得到粪肠杆菌MTR_EFS01菌株。通过圆盘扩散试验确定了菌株的MDR分布。利用Illumina NextSeq2000平台获得粪肠杆菌MTR_EFS01的全基因组序列。重新组装粪肠杆菌MTR_EFS01基因组,发现总长度为2862301 bp,覆盖率为80.0 ×。该基因组包含38个contigs, G + C含量为37.4%,鉴定出2个CRISPR阵列、7个噬菌体和55个RNA基因。菌株MTR_EFS01分类为ST862,致病性指数为0.896。该菌株含有8种ARGs,对四环素、红霉素、甲氧苄啶和耐多药外排泵具有耐药性。此外,在该菌株中鉴定出27个vfg,这些vfg与抗吞噬、粘附、生物膜形成、酶和免疫入侵有关。代谢功能分析表明,该菌株有243个子系统,其中碳水化合物代谢、氨基酸及其衍生物和蛋白质代谢相关基因最为丰富。本研究的发现强调了持续监测、研究和合作努力的重要性,以应对多种环境中耐多药和生物膜形成病原体日益增长的威胁。
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引用次数: 0
Haemato-biochemistry, erythromorphology, and histopathology of Oreochromis niloticus as influenced by Aeromonas hydrophila infection and florfenicol therapy 嗜水气单胞菌感染和氟苯尼考治疗对尼罗褐蝽血液生化、红细胞形态和组织病理学的影响
Pub Date : 2025-01-02 DOI: 10.1002/aro2.100
Joshi Sharon, Thangapalam Jawahar Abraham, Arya Sen, Ratnapriya Das, Priyanka Sinha, Satyanarayana Boda, Prasanna Kumar Patil

Aeromonas hydrophila infection is one of the key factors limiting tilapia production, and antibiotics play important roles in the control of diseases. This study evaluated the effectiveness of florfenicol (FFC) when administered orally at the therapeutic dose of 15 mg/kg fish biomass/day for 10 days against A. hydrophila infection in Oreochromis niloticus in terms of survival, changes in haemato-biochemistry, erythrocyte morphology, and histoarchitecture of the vital organs. A. hydrophila was moderately virulent to tilapia with an LD50 of 1.15 × 107 cells/fish. When challenged, it caused systemic infection in fish. The challenged fish were lethargic, wandered around the corners, rested at the bottom, swam vertically, and darkly pigmented. The FFC therapy effectively reduced bacteria-induced mortalities and physiological stress as the measured haemato-biochemical parameters indicated. The histopathological findings suggested alterations in tissue architecture of the kidney and liver tissues, which improved in the treated fish. Erythrocytes of the challenged fish showed elongated, irregular-shaped, tear-drop-shaped, crenated, and hypochromic erythrocytes, ragged cytoplasmic membranes, vacuolation, hypertrophied nucleus, and eccentric nucleus. These morphological alterations were reduced with FFC therapy. Compared to the untreated group, the FFC treatment normalized the haemato-biochemical parameters, improved wound healing, and promoted fish recovery against bacterial infections. The results hinted at the effectiveness of FFC against A. hydrophila infection in O. niloticus juveniles at the therapeutic dose. However, care must be taken for its judicious aquacultural application to avoid its negative impacts on fish, the environment, and consumers.

嗜水气单胞菌感染是制约罗非鱼生产的关键因素之一,抗生素在病害防治中起着重要作用。本研究评估了氟苯尼考(FFC)以15 mg/kg鱼生物量/天的治疗剂量口服,连续10天对抗尼罗褐口鱼(Oreochromis niloticus)嗜水单胞菌感染的有效性,包括存活、血液生化、红细胞形态和重要器官组织结构的变化。嗜水单胞菌对罗非鱼有中等毒力,LD50为1.15 × 107个细胞/条。当受到挑战时,它会引起鱼类的全身感染。受到挑战的鱼无精打采,在角落里游荡,在水底休息,垂直游动,肤色黝黑。血液生化指标显示,FFC治疗有效降低了细菌引起的死亡率和生理应激。组织病理学结果表明,肾脏和肝脏组织的组织结构发生了变化,在处理过的鱼中有所改善。致毒鱼红细胞呈细长、不规则、泪滴状、圆齿状、低色红细胞,胞膜粗糙,空泡化,细胞核肥大,细胞核偏心。这些形态学改变在FFC治疗后有所减少。与未治疗组相比,FFC治疗使血液生化参数正常化,改善了伤口愈合,促进了鱼类对细菌感染的恢复。结果提示,在治疗剂量下,FFC对niloticus幼鱼的嗜水单胞菌感染有一定的抑制作用。然而,必须注意其明智的水产养殖应用,以避免其对鱼类、环境和消费者的负面影响。
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引用次数: 0
Decoding regulatory programs underlying placode and dermal condensate cell fate commitment during hair follicle induction via single-cell multi-omics analysis 通过单细胞多组学分析解码毛囊诱导过程中基板和真皮凝聚细胞命运承诺的调控程序
Pub Date : 2024-12-23 DOI: 10.1002/aro2.99
Fang Li, Minghao Li, Tongtong Zhang, Menghua Sui, Hasan Khatib, Xin Wang

Understanding differences in chromatin state and changes in gene regulatory landscape of placode (Pc) and dermal condensate are crucial for decoding hair follicle (HF) morphogenesis programs. To identify cell-type-specific chromatin accessibility patterns in the developing HF, we integrated chromatin accessibility and transcriptome profiles at single-cell resolution during the murine HF induction stage. We applied unbiased analyses to identify seven major HF cell types and reclustered dermal (Der) and epithelium (Epi) subtypes to trace their cell fate specification. Our analysis showed that gene regulation in Der and Epi lineages is largely determined by cis-regulatory elements that direct gene expression in response to specific developmental cues. The chromatin accessibility of Twist2, Enpp2, Dkk1, and Sox2 varied from fibroblasts (Fb) to pre-DC lineage, while that of Edar, Lhx2, and Wnt10b varied from Epi to Pc lineage. Cell-type-specific enrichment of transcription factor binding motifs implicated Twist2 and Nfatc4 as key regulators in Fb to pre-DC fate specification, and Fos, Bach1, and Klf1 in Epi to Pc niche fate specification. Additionally, alignment of cell-type-specific peaks to super-enhancer databases identified key regulatory elements in both lineages. We identified and validated the critical cis-regulatory elements in pre-DC and Pc fate specifications through embryonic dorsal skin culture in vitro, suggesting that these elements may regulate critical genes essential for HF induction. Overall, our results provide a foundation for a comprehensive analysis of gene regulatory programs that initiate HF development, offering insights into the molecular mechanism of HF morphogenesis and clinical treatments of alopecia by skin grafts.

了解染色质状态的差异以及基板(Pc)和真皮凝析液基因调控景观的变化对于解码毛囊(HF)形态发生程序至关重要。为了确定发育中的HF中细胞类型特异性的染色质可及性模式,我们在小鼠HF诱导阶段在单细胞分辨率下整合了染色质可及性和转录组谱。我们应用无偏分析鉴定了7种主要的HF细胞类型,并重新聚集真皮(Der)和上皮(Epi)亚型,以追踪它们的细胞命运规范。我们的分析表明,Der和Epi谱系中的基因调控在很大程度上是由顺式调控元件决定的,顺式调控元件根据特定的发育线索指导基因表达。Twist2、Enpp2、Dkk1和Sox2的染色质可及性从成纤维细胞(Fb)到dc前谱系有所不同,而Edar、Lhx2和Wnt10b的染色质可及性从Epi到Pc谱系有所不同。转录因子结合基序的细胞类型特异性富集表明,Twist2和Nfatc4是Fb到dc前命运规范的关键调节因子,Fos、Bach1和Klf1是Epi到Pc生态位命运规范的关键调节因子。此外,将细胞类型特异性峰与超级增强子数据库比对,确定了两个谱系中的关键调控元件。我们通过体外胚胎背皮肤培养鉴定并验证了dc前和Pc命运规范中的关键顺式调控元件,表明这些元件可能调节HF诱导所必需的关键基因。总的来说,我们的研究结果为全面分析HF发展的基因调控程序提供了基础,为HF形态发生的分子机制和皮肤移植对脱发的临床治疗提供了见解。
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引用次数: 0
Determination of selenium speciation in the muscle, kidney, and liver from different animals treated with different selenium supplements by HPLC-ICP-MS 用HPLC-ICP-MS测定不同硒处理动物肌肉、肾脏和肝脏中硒的形态
Pub Date : 2024-12-16 DOI: 10.1002/aro2.97
Xiaoqing Guo, Xueting Jia, Kai Zhang, Chaohua Tang, Xueyang Si, Bo He, Manus Carey, Lynda S. Perkins, Qingyu Zhao, Junmin Zhang

Dietary selenium (Se) deficiency is recognized as a global problem, and exogenous Se supplementation can effectively enrich its levels in animal bodies. Offal tissues are equally important as meat in Se enrichment. Varying properties among Se species require information beyond total Se concentration to fully evaluate health risk/benefits. In the present study, the reliable inductively coupled plasma mass spectrometry (ICP-MS) and HPLC-ICP-MS methods were optimized to analyze total Se content and Se speciation in the muscle and kidney of sheep, kidney and liver of pig, and liver of chicken after different Se supplementation treatments. The total Se contents in the liver and kidney were higher than in muscle. Five Se species were detected in the muscle, and selenourea was additionally detected in the liver and kidney. Sheep muscle and chicken liver mainly contained selenomethionine, and other tissues mainly contained selenocysteine. As the levels of selenomethionine or selenium-enriched yeast increased in the feed, the proportion of selenomethionine in the sample increased, as well as the proportion of selenocysteine decreased, and almost no inorganic selenium was detected in all tissues. This study has provided insights for analyzing the Se enrichment patterns in tissues, which is significant for understanding the Se metabolism, animal health, and enriching the dietary Se supplementation for humans.

饲粮硒缺乏是公认的全球性问题,外源补充硒可以有效地提高动物体内硒水平。内脏组织在硒富集方面与肉类同等重要。不同种类硒的不同特性需要除总硒浓度以外的信息来充分评估健康风险/益处。本研究优化了电感耦合等离子体质谱(ICP-MS)和高效液相色谱-ICP-MS两种可靠的方法,用于分析不同补硒处理后绵羊肌肉和肾脏、猪肾脏和肝脏以及鸡肝脏中总硒含量和硒形态。肝脏和肾脏的总硒含量高于肌肉。肌肉中检测到5种硒,肝脏和肾脏中也检测到硒脲。绵羊肌肉和鸡肝脏主要含硒代蛋氨酸,其他组织主要含硒半胱氨酸。随着饲料中硒代蛋氨酸或富硒酵母含量的增加,样品中硒代蛋氨酸的比例增加,硒代半胱氨酸的比例降低,所有组织中几乎没有检测到无机硒。本研究为分析硒在组织中的富集规律提供了新的思路,对了解硒代谢、动物健康和丰富人类膳食硒补充具有重要意义。
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引用次数: 0
TRIB3 suppresses milk fatty acids metabolism by inhibiting p-AKT/PPARG signaling in goat mammary epithelial cells TRIB3通过抑制山羊乳腺上皮细胞p-AKT/PPARG信号通路抑制乳脂肪酸代谢
Pub Date : 2024-12-04 DOI: 10.1002/aro2.98
Xinglong Gong, Tan Pan, Tiantian Xiong, Yifan Zhu, Juan J. Loor, Chengming Han, Yifan Li, Huan Lei, Jun Luo, Cong Li

Tribbles pseudokinase 3 (TRIB3) interacts with a variety of proteins and plays a key role in the regulation of glucose metabolism and glycolysis in nonruminants, but whether it has a specific role in goat mammary lipid metabolism has still been kept unknown. In this study, we observed that TRIB3 is highly expressed in the mammary tissues of lactating dairy goats. Overexpressing TRIB3 in goat mammary epithelial cells (GMECs) suppressed the mRNA expression of GPAM, DGAT1, and PLIN1, which are associated with the formation of triacylglycerol and lipid droplets (p < 0.05). The fatty acid-sensitive transcription regulator PPARG was also downregulated. Interfering TRIB3 had the opposite effect and decreased Akt phosphorylation. The TRIB3 gene influenced fatty acid composition in GMECs, and its overexpression reduced the total concentration of intracellular triacylglycerol (p < 0.01), this response was verified using BODIPY staining. Overall, these data indicated that TRIB3 suppresses milk fatty acids metabolism through inhibiting p-AKT/PPARG signaling in GMECs.

Tribbles pseudokinase 3 (TRIB3)与多种蛋白质相互作用,在非反刍动物的糖代谢和糖酵解调节中起关键作用,但其是否在山羊乳腺脂质代谢中起特定作用尚不清楚。在本研究中,我们观察到TRIB3在哺乳期奶山羊的乳腺组织中高表达。山羊乳腺上皮细胞(gmac)过表达TRIB3可抑制与甘油三酯和脂滴形成相关的GPAM、DGAT1和PLIN1 mRNA的表达(p <;0.05)。脂肪酸敏感转录调控因子PPARG也下调。干扰TRIB3具有相反的效果,并降低Akt磷酸化。TRIB3基因影响gmec中脂肪酸组成,其过表达降低了细胞内甘油三酯的总浓度(p <;0.01),用BODIPY染色证实了这种反应。综上所述,这些数据表明TRIB3通过抑制gmes中p-AKT/PPARG信号传导抑制乳脂肪酸代谢。
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引用次数: 0
Plants, plant-derived compounds, probiotics, and postbiotics as green agents to fight against poultry coccidiosis: A review 植物、植物衍生化合物、益生菌和后益生菌作为防治家禽球虫病的绿色制剂:综述
Pub Date : 2024-11-11 DOI: 10.1002/aro2.96
Pan Chen, Kaili Liu, Taojing Yue, Yanan Lu, Senyang Li, Fuchun Jian, Shucheng Huang

The intestinal tract is the main place for animals to digest food and absorb nutrients, which also serves as the first line of defense against pathogens that invade the internal environment. Therefore, normal intestinal structure and function are essential for animal health. Poultry coccidiosis is an intestinal disease primarily caused by the parasitization of intestinal epithelial cells by protozoa of the genus Eimeria. The occurrence of coccidiosis not only compromises the intestinal integrity of poultry but also increases their disease susceptibility, thus posing a serious threat to the overall health and productivity of poultry. Nowadays, the primary methods for controlling and preventing coccidiosis in poultry are anticoccidial drugs or live oocyst vaccines. However, the use of the former may be associated with problems of resistance and drug residues, while the use of the latter may cause intestinal damage and significantly increase farming costs. For these reasons, it is critical to investigate green, safe, and cost-effective natural alternative strategies such as phytochemicals and probiotics for controlling coccidiosis as well as mitigating the deleterious effects of coccidial infections in production. In this review, we aim to summarize the role, mechanisms, and therapeutic potential of natural products in the treatment of coccidiosis to lay a theoretical foundation for effective coccidiosis control.

肠道是动物消化食物和吸收营养物质的主要场所,也是抵御病原体侵入内环境的第一道防线。因此,正常的肠道结构和功能对动物健康至关重要。家禽球虫病是一种主要由艾美耳球虫属原生动物寄生于肠上皮细胞引起的肠道疾病。球虫病的发生不仅损害了家禽的肠道完整性,而且增加了家禽的疾病易感性,从而对家禽的整体健康和生产能力构成严重威胁。目前,控制和预防家禽球虫病的主要方法是抗球虫药物或活卵囊疫苗。然而,前者的使用可能与耐药性和药物残留问题有关,而后者的使用可能造成肠道损伤并显著增加养殖成本。由于这些原因,研究绿色、安全、具有成本效益的天然替代策略至关重要,如植物化学物质和益生菌,以控制球虫病,并减轻球虫感染在生产中的有害影响。本文就天然产物在球虫病治疗中的作用、机制及治疗潜力进行综述,为球虫病的有效防治奠定理论基础。
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引用次数: 0
The E-volution in swine nutrition: Current perspectives on vitamin E 猪营养中的E-进化:维生素E的最新观点
Pub Date : 2024-11-07 DOI: 10.1002/aro2.93
Yauheni Shastak, Wolf Pelletier

This review provides an in-depth analysis of vitamin E's multifaceted role in swine nutrition, incorporating both traditional insights and contemporary research. It begins with an exploration of vitamin E from an evolutionary perspective, followed by a detailed examination of its absorption, metabolism, and excretion in swine. The review emphasizes the micronutrient's critical functions in swine physiology, particularly its antioxidant properties and its emerging links to epigenetics, which include deoxyribonucleic acid methylation, histone modification, and noncoding ribonucleic acid regulation. The interactions of vitamin E with other dietary components are discussed, along with established nutritional requirements and current recommendations for supplementation. Additionally, the health benefits and performance improvements associated with vitamin E are presented, emphasizing its importance in immune function, growth, and meat quality. Despite extensive research, the review identifies gaps in understanding the bioavailability and long-term impacts of different vitamin E isoforms and supra-nutritional supplementation levels. It concludes with a discussion of research gaps and future directions, particularly the need for studies on the long-term effects of high-dose vitamin E supplementation and the influence of environmental factors on its metabolism. Through this comprehensive synthesis, this study aims to provide a holistic understanding of vitamin E's essential contributions to swine health and nutrition, with the goal of informing better dietary practices and enhancing swine productivity.

这篇综述深入分析了维生素E在猪营养中的多方面作用,结合了传统的见解和当代的研究。它开始与维生素E的探索从进化的角度来看,其次是它的吸收,代谢和猪排泄的详细检查。该综述强调了微量营养素在猪生理中的关键功能,特别是其抗氧化特性及其与表观遗传学的新联系,包括脱氧核糖核酸甲基化,组蛋白修饰和非编码核糖核酸调节。讨论了维生素E与其他膳食成分的相互作用,以及确定的营养需求和目前的补充建议。此外,还介绍了与维生素E相关的健康益处和性能改善,强调了其在免疫功能、生长和肉品质方面的重要性。尽管进行了广泛的研究,但该综述指出,在了解不同维生素E亚型和超营养补充水平的生物利用度和长期影响方面存在差距。最后讨论了研究的空白和未来的发展方向,特别是需要研究高剂量维生素E补充的长期效应和环境因素对其代谢的影响。通过这一综合研究,本研究旨在全面了解维生素E对猪健康和营养的重要贡献,为更好的饮食习惯和提高猪的生产能力提供信息。
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引用次数: 0
Effect of terracotta drinker and/or water addition of ASPRO-C plus on behavior, growth, and physiological response of broiler chickens exposed to high temperature 陶土饮水器和/或水中添加ASPRO-C +对高温暴露肉鸡行为、生长和生理反应的影响
Pub Date : 2024-11-07 DOI: 10.1002/aro2.94
Tadondjou Tchingo Cyrille d’Alex, Edmond Gilhoube, Denis Djaomanwe, Narcisse Ledang, Roger Ponka, Ferdinand Ngoula, Alexis Teguia

This study aimed to evaluate the effects of a terracotta drinker and/or water supplementation with ASPRO-C Plus on the zootechnical performance of broiler chickens reared in a hot environment. A total of 160 Cobb 500 broiler chicks of 15 days old (240.2 ± 39.82 g) were divided into four treatment groups in a 2 x 2 factorial arrangement of drinker type (plastic or terracotta) and water with or without ASPRO-C Plus (1 g/L) supplementation, each consisting of 4 replicate pens. Respiratory rate, water intake, feed intake, and live body weight were recorded weekly. At 49 days old, 12 birds per group were randomly selected, fasted for 12 h, weighed, and slaughtered for carcass evaluation and blood collection. The respiration rate of broilers decreased significantly (p < 0.01) with the terracotta drinker as compared to the plastic drinker. The water intake, the feed intake and the body weight gain increased significantly (p < 0.01) with the terracotta drinker as compared to the plastic drinker. The water addition of ASPRO-C Plus significantly increased (p < 0.01) the relative weight of abdominal fat and spleen in broilers. The alpha-amylase activity was significantly decreased (p < 0.01) with the water addition of ASPRO-C Plus. The serum content of total cholesterol was significantly increased (p < 0.01) with the terracotta drinker. It can be concluded that ASPRO-C Plus can slightly improve liveability, but using the terracotta drinker can be more efficient in reducing the behavioral response to heat stress and can improve the growth performance.

本研究旨在评价赤陶饮水器和/或水中添加ASPRO-C Plus对高温环境下饲养肉鸡动物技术性能的影响。选取160只15日龄(240.2±39.82 g)的Cobb 500肉鸡,按饮水器(塑料或陶土)和水中添加或不添加ASPRO-C Plus (1 g/L)的2 × 2因子设计分为4个处理组,每组4个重复栏。每周记录呼吸频率、饮水量、采食量和活体重。49日龄时,每组随机选择12只鸡,禁食12 h,称重后屠宰进行胴体评价和采血。肉仔鸡呼吸速率显著降低(p <;与塑料杯相比,陶土杯与塑料杯的差异为0.01)。采水量、采食量和增重显著增加(p <;与塑料杯相比,陶土杯与塑料杯的差异为0.01)。ASPRO-C Plus的水添加量显著增加(p <;0.01)肉仔鸡腹部脂肪和脾脏的相对重量。α -淀粉酶活性显著降低(p <;0.01),加ASPRO-C Plus水。血清总胆固醇含量显著升高(p <;0.01)。综上所述,ASPRO-C Plus可以略微提高鸡的宜居性,但使用陶土饮水器可以更有效地降低鸡对热应激的行为反应,提高鸡的生长性能。
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引用次数: 0
Fresh insights into the light-induced pineal gland circadian rhythm transmission mechanism derived from mRNA and miRNA profiling 从mRNA和miRNA分析中获得光诱导松果体昼夜节律传递机制的新见解
Pub Date : 2024-11-01 DOI: 10.1002/aro2.95
Yunlei Li, Yanyan Sun, Jingwei Yuan, Xiangchen Li, Lei Shi, Adamu Mani Isa, Yuanmei Wang, Pingzhuang Ge, Yunhe Zong, Panlin Wang, Jilan Chen

The circadian clock significantly impacts animal health and productivity, with light playing a crucial role in regulating circadian rhythms. However, the mechanisms behind light-induced circadian transmission remain unclear, particularly in light-sensitive avian species. The pineal gland is a key component acting as the photosensitive master oscillator in the avian clock system. Using transcriptome sequencing and small RNA sequencing technologies, we identified circadian genes and miRNAs in the chick pineal gland under light–dark and sudden constant-light conditions. We observed rhythmic oscillations in up to 1299 genes during the light–dark cycle, with 400 genes maintaining rhythms under constant light. Our findings highlight the light-sensitive temporal organization in birds as the phase distribution of circadian genes in the pineal gland correlates with light exposure changes. A novel regulatory mechanism involving light, cyclic adenosine monophosphate, cyclic guanosine monophosphate, light-sensitive miRNAs, such as gga-miR-34b-5p, and light-sensitive circadian genes, such as CRY2, was discovered to participate in the light input system of the chick pineal clock, through which light regulates the oscillators and outputs of the circadian clock system. Additionally, transcriptomic analysis, liquid chromatography–mass spectrometry, and Oil Red O staining revealed cyclic changes in lipid synthesis and metabolism throughout the circadian day, which may be a key mechanism through which the circadian clock influences pineal physiology. Our results enhance the understanding of light-induced circadian transmission mechanisms and identify potential targets for optimizing the circadian clock through light.

生物钟对动物的健康和生产力有显著影响,而光在调节昼夜节律中起着至关重要的作用。然而,光诱导昼夜节律传递的机制仍不清楚,特别是在光敏鸟类中。松果体是鸟类时钟系统中光敏主振荡器的关键组成部分。利用转录组测序和小RNA测序技术,我们鉴定了鸡松果体在光照-黑暗和突然恒定光照条件下的昼夜节律基因和mirna。在光暗循环中,我们观察到多达1299个基因的节律振荡,其中400个基因在恒定光照下保持节律。我们的发现强调了鸟类的光敏时间组织,因为松果体中昼夜节律基因的相位分布与光照变化有关。一种涉及光、单磷酸环腺苷、单磷酸环鸟苷、光敏mirna(如gga-miR-34b-5p)和光敏昼夜节律基因(如CRY2)的新型调控机制被发现参与了小鸡松果体时钟的光输入系统,光通过该系统调节生物钟系统的振荡器和输出。此外,转录组学分析、液相色谱-质谱分析和油红O染色显示,脂质合成和代谢在昼夜节律中循环变化,这可能是生物钟影响松果体生理的关键机制。我们的研究结果增强了对光诱导昼夜节律传输机制的理解,并确定了通过光优化昼夜节律时钟的潜在目标。
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引用次数: 0
Animal biotech breeding and reproduction: A new engine for high-quality development of animal husbandry 动物生物技术育种与繁殖:畜牧业高质量发展的新引擎
Pub Date : 2024-10-26 DOI: 10.1002/aro2.84
Yong Zhang, Jun Liu
<p>Animal-based products, such as meat, eggs, milk, and their by-products, serve as the predominant protein sources for humans and are vital for supporting physiological functions. Animal proteins align more closely with our nutritional requirements compared to plant-based proteins. With the ever-growing global population, the demand for these fundamental food sources is increasing. Globally, about 97.64 million tons of livestock products, including meat, eggs, and milk, are consumed annually, accounting for nearly 48% of all feed grain usage. Nevertheless, the livestock industry imposes a substantial environmental footprint, contributing to 57% of the total CO<sub>2</sub> emissions from food production. Amidst escalating resource limitations and evolving geopolitical dynamics, the security of our livestock food supply is in threat. To address these challenges, the livestock sector must prioritize high-quality growth through innovative scientific and technological breakthroughs.</p><p>Exceptional livestock and poultry breeds contribute over 40% to the advancement of the livestock industry and are instrumental in enhancing its productivity. The integration of biotechnology, information technology, and artificial intelligence is driving animal breeding into a more efficient and precise phase known as Animal Breeding 4.0. A new wave of high-efficiency breeding technologies, exemplified by genomic selection (GS), gene editing, and in vitro embryo production accelerates targeted animal breeding significantly by enhancing breeding efficiency and reducing the breeding cycle time. GS has been widely adopted for cattle, pig, and sheep breeding, cutting breeding costs by 90% and boosting the genetic progress of critical traits by 50%. The industrialization of genetically modified animals is gaining momentum and promises to offer competitive advantages over conventional breeding methods. Currently, several types of gene-edited animals have passed safety evaluations, including GalSafe, a gene-knockout pig approved by the U.S. FDA in 2020, gene-edited heat stress-resistant beef cattle approved by the U.S. FDA in 2022, and gene-edited tiger puffer-fish and red snapper approved by the Japanese Ministry of Health, Labor, and Welfare in 2021. With the progression of multi-omics technology, key trait-related functional genes in livestock and poultry are continually being uncovered. The application of novel biological breeding techniques is anticipated to generate more diverse livestock and poultry varieties with high-yield, high-quality, disease-resistant, and environmentally friendly phenotypes.</p><p>This special issue, entitled <i>Animal Biotech Breeding and Reproduction</i>, is designed to facilitate academic dialog in this special domain, fostering the convergence of significant insights, breakthroughs, technological advancements, and industrial growth in the areas of molecular breeding and reproduction. The scope is to accelerate the pace of scientific and t
肉、蛋、奶及其副产品等动物性产品是人类最主要的蛋白质来源,对支持人体生理功能至关重要。与植物性蛋白质相比,动物性蛋白质更符合我们的营养需求。随着全球人口的不断增长,对这些基本食物来源的需求也在不断增加。全球每年消耗约 9764 万吨畜产品,包括肉、蛋和奶,占饲料谷物总用量的近 48%。然而,畜牧业对环境造成了巨大的影响,其二氧化碳排放量占食品生产二氧化碳排放总量的 57%。在资源限制不断升级和地缘政治动态不断变化的情况下,我们的畜牧业食品供应安全正受到威胁。为了应对这些挑战,畜牧业必须优先考虑通过创新科技突破实现高质量增长。优良畜禽品种对畜牧业发展的贡献率超过 40%,在提高畜牧业生产率方面功不可没。生物技术、信息技术和人工智能的融合正推动动物育种进入更高效、更精准的阶段,即 "动物育种 4.0"。以基因组选择(GS)、基因编辑和体外胚胎生产为代表的新一轮高效育种技术,通过提高育种效率和缩短育种周期,大大加快了有针对性的动物育种。基因组选择技术已广泛应用于牛、猪和羊的育种,使育种成本降低了 90%,关键性状的遗传进展提高了 50%。转基因动物的产业化发展势头迅猛,有望为传统育种方法带来竞争优势。目前,已有多种基因编辑动物通过安全评估,包括2020年美国FDA批准的基因敲除猪GalSafe、2022年美国FDA批准的基因编辑抗热应激肉牛、2021年日本厚生劳动省批准的基因编辑虎河豚和红鲷鱼等。随着多组学技术的发展,与畜禽性状相关的关键功能基因不断被发现。本特刊题为《动物生物技术育种与繁殖》,旨在促进这一特殊领域的学术对话,促进分子育种与繁殖领域重要见解、突破、技术进步和产业发展的汇聚。其宗旨是加快动物育种领域的科技创新步伐。通过加强学术研究和对话,我们可以不断完善相关技术,建立一个强大、高效和可持续的动物食品生产框架。动物生物技术育种的产业化在全球范围内面临着诸多障碍和阻碍。总之,将生物育种与更高效、更先进的繁殖技术相结合,是动物育种领域科技创新的关键前沿。生物育种技术的快速发展将显著提高畜禽的生产力,为畜牧业的高质量增长提供重要的技术支持。这些技术为确保以动物为基础的食品供应提供了重要途径:构思;方法;撰写-审阅;编辑;项目管理;撰写-原稿。刘军:撰写-审阅-编辑;构思;方法论;撰写-原稿。
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Animal Research and One Health
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