Maria C. E. Queiroz, Aylpy R. D. Santos, Marcelo Vedovatto, André L. J. Ferraz, Evellyn R. F. Bastianel, Marcus V. M. Oliveira, Rosana M. S. Arruda, Dalton M. Oliveira
The aim was to evaluate the ingestive behavior and body development of backgrounded heifers from three genotypes in the Brazilian Pantanal. Twenty-two heifers with an average body weight of 180 kg and 15 months of age were used, distributed into three genotype groups: eight Nelore (N), seven Nelore × Angus (½ Angus, NA), and seven Nelore × Pantaneiro (½ Pantaneiro, NP). Nelore and NP heifers exhibited similar grazing times, which were higher compared with NA heifers. It was observed that chest depth, heart girth, rump width between ischia, and hook width between ilia values were higher in NA heifers and similar among the other genotypes. The total and average daily gain of NA heifers was higher than N and NP heifers. It is concluded that there are significant differences in ingestive behavior and body development among genotypes, suggesting variations in the capacity of genotypes to adapt to the Pantanal environment. These results suggest that the crossbreeding between Nelore and Angus maximizes the benefits derived from heterosis, as individuals from this cross are more efficient in weight gain and have body development with desirable characteristics. The crossbreeding of the Pantaneiro breed with Nelore resulted in low body development in the NP heifers, indicating limited heterosis gains from this cross, even in the breed's native environment.
{"title":"Ingestive Behavior and Body Development of Backgrounded Heifers From Three Genotypes in the Brazilian Pantanal","authors":"Maria C. E. Queiroz, Aylpy R. D. Santos, Marcelo Vedovatto, André L. J. Ferraz, Evellyn R. F. Bastianel, Marcus V. M. Oliveira, Rosana M. S. Arruda, Dalton M. Oliveira","doi":"10.1002/aro2.70004","DOIUrl":"https://doi.org/10.1002/aro2.70004","url":null,"abstract":"<p>The aim was to evaluate the ingestive behavior and body development of backgrounded heifers from three genotypes in the Brazilian Pantanal. Twenty-two heifers with an average body weight of 180 kg and 15 months of age were used, distributed into three genotype groups: eight Nelore (N), seven Nelore × Angus (½ Angus, NA), and seven Nelore × Pantaneiro (½ Pantaneiro, NP). Nelore and NP heifers exhibited similar grazing times, which were higher compared with NA heifers. It was observed that chest depth, heart girth, rump width between ischia, and hook width between ilia values were higher in NA heifers and similar among the other genotypes. The total and average daily gain of NA heifers was higher than N and NP heifers. It is concluded that there are significant differences in ingestive behavior and body development among genotypes, suggesting variations in the capacity of genotypes to adapt to the Pantanal environment. These results suggest that the crossbreeding between Nelore and Angus maximizes the benefits derived from heterosis, as individuals from this cross are more efficient in weight gain and have body development with desirable characteristics. The crossbreeding of the Pantaneiro breed with Nelore resulted in low body development in the NP heifers, indicating limited heterosis gains from this cross, even in the breed's native environment.</p>","PeriodicalId":100086,"journal":{"name":"Animal Research and One Health","volume":"3 4","pages":"445-453"},"PeriodicalIF":0.0,"publicationDate":"2025-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aro2.70004","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145469907","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Muhammad Wasim Haider, Syed Mohsin Abbas, Muhammad Ahmad Saeed, Umar Farooq, Muhammad Waseem, Muhammad Adil, Muhammad Rizwan Javed, Izhar ul Haq, Crossby Osei Tutu
Fruit and vegetable peels are often regarded as waste, leading to their disposal in landfills. As a result, methane gas emissions during the decomposition of waste lead to the loss of potentially valuable resources. Nonetheless, these peels are an abundant source of nutrients, minerals, and vitamins such as dietary fiber, anthocyanins, ascorbic acid, and phenolic compounds, which can enhance animal health and productivity and, as a result, increase the milk and meat production of livestock as well as the drawing power of draught animals. From an environmental perspective, the utilization of peels for animal feed can significantly reduce organic waste accumulation, decrease greenhouse gas emissions associated with waste decomposition, and lower the dependency on conventional feed ingredients such as grains, which are often produced through resource-intensive agricultural practices. To date, no comprehensive review has been found on the nutritional and environmental impact of fruit and vegetable peels as animal feed. This paper aims to explore the nutritional and environmental impact of various kinds of fruit and vegetable peels.
{"title":"Environmental and Nutritional Value of Fruit and Vegetable Peels as Animal Feed: A Comprehensive Review","authors":"Muhammad Wasim Haider, Syed Mohsin Abbas, Muhammad Ahmad Saeed, Umar Farooq, Muhammad Waseem, Muhammad Adil, Muhammad Rizwan Javed, Izhar ul Haq, Crossby Osei Tutu","doi":"10.1002/aro2.70002","DOIUrl":"https://doi.org/10.1002/aro2.70002","url":null,"abstract":"<p>Fruit and vegetable peels are often regarded as waste, leading to their disposal in landfills. As a result, methane gas emissions during the decomposition of waste lead to the loss of potentially valuable resources. Nonetheless, these peels are an abundant source of nutrients, minerals, and vitamins such as dietary fiber, anthocyanins, ascorbic acid, and phenolic compounds, which can enhance animal health and productivity and, as a result, increase the milk and meat production of livestock as well as the drawing power of draught animals. From an environmental perspective, the utilization of peels for animal feed can significantly reduce organic waste accumulation, decrease greenhouse gas emissions associated with waste decomposition, and lower the dependency on conventional feed ingredients such as grains, which are often produced through resource-intensive agricultural practices. To date, no comprehensive review has been found on the nutritional and environmental impact of fruit and vegetable peels as animal feed. This paper aims to explore the nutritional and environmental impact of various kinds of fruit and vegetable peels.</p>","PeriodicalId":100086,"journal":{"name":"Animal Research and One Health","volume":"3 2","pages":"149-164"},"PeriodicalIF":0.0,"publicationDate":"2025-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aro2.70002","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144091444","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Brucellosis is a zoonotic disease caused by Brucella spp. which seriously jeopardizes the health and safety of animals and human beings. Therefore, developing a live attenuated vaccine is a priority. In this study, a genetically stable Brucella rough RA343 strain was obtained by cross-induction. The virulence and protective efficacy of RA343 were subsequently assessed, and RA343 showed reduction of survival ability in RAW264.7 cells and low pathogenicity in the murine model in vivo. Immunization with RA343 elevated expression levels of IFN-γ and TNF-α and a robust T-cell immune response in mice. Guinea pigs were inoculated with RA343 at 1 × 109 CFU for single and booster immunization. After the single immunization of RA343, about 60% of guinea pigs could resist the attack of M28 or 2308 strain. The secondary immunization in guinea pigs confer 80% and 70% protection against M28 or 2308 challenges, respectively. Then, the gene expression profile of RAW264.7 cells infected with Brucella abortus A19 or RA343 was analyzed by RNA-seq to investigate the cellular responses immediately after Brucella entry. The RNA-seq analysis revealed that a total of 14,549 genes were significantly regulated by Brucella 1 h postinfection. The differential gene expression was predominantly associated with innate immune responses and many inflammatory pathways, such as MAPK, JAK-STAT, and NF-κB signaling ones. Our findings suggest that the RA343 strain is a promising novel vaccine candidate to protect animals from B. abortus and Brucella melitensis infection. Meanwhile, this study serves as a new reference for investigating the immune regulatory mechanisms of rough Brucella.
{"title":"The Induction and Characterization of a Potential Rough-Type Brucella Vaccine Candidate Strain RA343, and Its Safety, Protective Efficacy in Mouse and Guinea Pig Models","authors":"Linjiao Li, Guangzhi Zhang, Minghe Liu, Lang Lv, Xiaowei Peng, Yu Feng, Xiaotong Yang, Jiabo Ding, Chunhai Liu, Jianhua Qin, Peng Li, Hui Jiang, Xuezheng Fan","doi":"10.1002/aro2.70001","DOIUrl":"https://doi.org/10.1002/aro2.70001","url":null,"abstract":"<p>Brucellosis is a zoonotic disease caused by <i>Brucella</i> spp. which seriously jeopardizes the health and safety of animals and human beings. Therefore, developing a live attenuated vaccine is a priority. In this study, a genetically stable <i>Brucella</i> rough RA343 strain was obtained by cross-induction. The virulence and protective efficacy of RA343 were subsequently assessed, and RA343 showed reduction of survival ability in RAW264.7 cells and low pathogenicity in the murine model in vivo. Immunization with RA343 elevated expression levels of IFN-γ and TNF-α and a robust T-cell immune response in mice. Guinea pigs were inoculated with RA343 at 1 × 10<sup>9</sup> CFU for single and booster immunization. After the single immunization of RA343, about 60% of guinea pigs could resist the attack of M28 or 2308 strain. The secondary immunization in guinea pigs confer 80% and 70% protection against M28 or 2308 challenges, respectively. Then, the gene expression profile of RAW264.7 cells infected with <i>Brucella abortus</i> A19 or RA343 was analyzed by RNA-seq to investigate the cellular responses immediately after <i>Brucella</i> entry. The RNA-seq analysis revealed that a total of 14,549 genes were significantly regulated by <i>Brucella</i> 1 h postinfection. The differential gene expression was predominantly associated with innate immune responses and many inflammatory pathways, such as MAPK, JAK-STAT, and NF-κB signaling ones. Our findings suggest that the RA343 strain is a promising novel vaccine candidate to protect animals from <i>B. abortus</i> and <i>Brucella melitensis</i> infection. Meanwhile, this study serves as a new reference for investigating the immune regulatory mechanisms of rough <i>Brucella</i>.</p>","PeriodicalId":100086,"journal":{"name":"Animal Research and One Health","volume":"3 2","pages":"195-205"},"PeriodicalIF":0.0,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aro2.70001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144091457","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
RNA-based biopesticides, heralding the third revolution in agricultural pest and disease control, emerge as pivotal for sustainable aquaculture in China. This review delves into the background, evolution, and applications of RNA biopesticides, emphasizing their transformative impact on aquaculture disease management. RNA-based biopesticides offer myriad advantages. Utilizing dsRNA formulations ensures species-specific targeting, thereby minimizing effects on nontarget organisms. Swift environmental degradation of dsRNA addresses concerns about residual effects and pollution. Crucially, the host’s genetic structure remains unchanged, averting heritable variations. Additionally, resistance challenges are easily mitigated through targeted gene replacement. Nevertheless, challenges impede the technology’s full potential. Factors such as target gene selection, varying effectiveness across pests, and susceptibility of dsRNA to pathogen degradation can influence overall efficacy. The widespread use of RNA pesticides prompts scrutiny of their impact on nontarget organisms’ immune systems, necessitating meticulous consideration of exogenous dsRNA biosafety. Furthermore, assessing the toxicity of viruses and microorganisms as dsRNA carriers is crucial. High production costs and lower efficiency in large-scale production compared to conventional pesticides demand urgent attention. Future research should prioritize the optimization of dsRNA delivery systems to improve stability and targeting precision. Investigating the integration of RNA-based pesticides with other sustainable agricultural practices may further mitigate environmental impacts. Moreover, advancements in cost-effective production techniques and regulatory frameworks will be critical for enabling the widespread adoption of RNA biopesticides, thereby securing their role in the future management of global aquaculture diseases.
{"title":"RNA-Based Biopesticides: Pioneering Precision Solutions for Sustainable Aquaculture in China","authors":"Yiran Huang, Yingmin Dai, Zhuotong Huang, Mengqi Zhang, Lijun Xiu, Xianhui Zhang, Youyu Zhang, Lixing Huang","doi":"10.1002/aro2.70000","DOIUrl":"https://doi.org/10.1002/aro2.70000","url":null,"abstract":"<p>RNA-based biopesticides, heralding the third revolution in agricultural pest and disease control, emerge as pivotal for sustainable aquaculture in China. This review delves into the background, evolution, and applications of RNA biopesticides, emphasizing their transformative impact on aquaculture disease management. RNA-based biopesticides offer myriad advantages. Utilizing dsRNA formulations ensures species-specific targeting, thereby minimizing effects on nontarget organisms. Swift environmental degradation of dsRNA addresses concerns about residual effects and pollution. Crucially, the host’s genetic structure remains unchanged, averting heritable variations. Additionally, resistance challenges are easily mitigated through targeted gene replacement. Nevertheless, challenges impede the technology’s full potential. Factors such as target gene selection, varying effectiveness across pests, and susceptibility of dsRNA to pathogen degradation can influence overall efficacy. The widespread use of RNA pesticides prompts scrutiny of their impact on nontarget organisms’ immune systems, necessitating meticulous consideration of exogenous dsRNA biosafety. Furthermore, assessing the toxicity of viruses and microorganisms as dsRNA carriers is crucial. High production costs and lower efficiency in large-scale production compared to conventional pesticides demand urgent attention. Future research should prioritize the optimization of dsRNA delivery systems to improve stability and targeting precision. Investigating the integration of RNA-based pesticides with other sustainable agricultural practices may further mitigate environmental impacts. Moreover, advancements in cost-effective production techniques and regulatory frameworks will be critical for enabling the widespread adoption of RNA biopesticides, thereby securing their role in the future management of global aquaculture diseases.</p>","PeriodicalId":100086,"journal":{"name":"Animal Research and One Health","volume":"3 2","pages":"165-176"},"PeriodicalIF":0.0,"publicationDate":"2025-02-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aro2.70000","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144091497","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Meiotic recombination is key for genetic diversity, but its dynamics are underexplored in small inbred beef cattle populations. This study examines recombination in closed beef cattle populations and identifies related genomic regions. Using genotypic data from 1020 Line 1 Hereford and 3420 Composite Gene Combination (CGC) cattle, recombination rates were estimated through offspring and progenitor haplotypes. The CGC composite displayed a higher recombination rate (27.24 events) than the Line 1 population (26.38 events), with reduced rates in Line 1 potentially due to extended homozygous segments. Recombination varied by autosome length, increasing with longer autosomes. A genome-wide association study revealed novel genomic regions associated with recombination: significantly associated SNP markers were found on Bos taurus autosome (BTA) 1, 7, 13, 15, and 19 in the Line 1 population, and numerous others in the CGC population, indicating complex polygenic influences.
{"title":"Genomic Evaluation of Recombination in Small Highly Inbred Beef Cattle Populations","authors":"E. Hay, A. S. Ling","doi":"10.1002/aro2.103","DOIUrl":"https://doi.org/10.1002/aro2.103","url":null,"abstract":"<p>Meiotic recombination is key for genetic diversity, but its dynamics are underexplored in small inbred beef cattle populations. This study examines recombination in closed beef cattle populations and identifies related genomic regions. Using genotypic data from 1020 Line 1 Hereford and 3420 Composite Gene Combination (CGC) cattle, recombination rates were estimated through offspring and progenitor haplotypes. The CGC composite displayed a higher recombination rate (27.24 events) than the Line 1 population (26.38 events), with reduced rates in Line 1 potentially due to extended homozygous segments. Recombination varied by autosome length, increasing with longer autosomes. A genome-wide association study revealed novel genomic regions associated with recombination: significantly associated SNP markers were found on <i>Bos taurus</i> autosome (BTA) 1, 7, 13, 15, and 19 in the Line 1 population, and numerous others in the CGC population, indicating complex polygenic influences.</p>","PeriodicalId":100086,"journal":{"name":"Animal Research and One Health","volume":"3 3","pages":"261-267"},"PeriodicalIF":0.0,"publicationDate":"2025-02-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aro2.103","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144833307","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
<p>The genetic origins and dispersal of domesticated cattle, in common with other livestock species, is getting increasingly complex the closer we look [<span>1, 2</span>]. This trend has accelerated over the last decade, particularly through comparative analyses of whole-genome sequence (WGS) data sets (paleogenomes) generated using ancient DNA (aDNA) from the extinct wild aurochs (<i>Bos primigenius</i>), the progenitor of modern cattle populations [<span>3-7</span>]. These and other high-resolution population genomics studies of domestic cattle have led to a reappraisal of simple models for understanding cattle genetic origins, domestication, and diversity, which developed from the first surveys of maternally inherited mitochondrial DNA (mtDNA) in modern and ancient cattle [<span>8-10</span>]. In a similar fashion to our more nuanced understanding of recent human evolution and the evidence for gene flow from archaic hominins [<span>11</span>], it is now clear that nuclear genomic introgression from wild aurochsen populations during the Holocene has had a significant impact on the ancestry of modern cattle breeds. The rich landscape of cattle genetic and phenotypic diversity across the globe does not derive solely from the small number of domestication centres in Southwest Asia that gave rise to modern humpless taurine (<i>Bos taurus</i>), humped indicine (<i>Bos indicus</i>), and <i>B</i>. <i>taurus</i> × <i>B</i>. <i>indicus</i> hybrid populations.</p><p>Recently published work from Jiawen Hou and her colleagues provides important new insights into the biogeography of <i>B</i>. <i>primigenius</i> and adds to the growing body of evidence for aurochs admixture in East Asian cattle [<span>12</span>]. Bovine archeological material representing 59 specimens collected from the Songnen Plain in Northeast China and from the Qinghai–Tibet Plateau (QTP), was used to generate paleogenomic data for 16 different aurochsen, which were radiocarbon dated to between 3.7 and 37.0 kya (thousand years ago). These data sets were integrated with previously published paleogenomes from 74 ancient wild and domestic cattle [<span>6, 7, 13</span>] plus WGS data from almost 200 modern cattle (taurine, indicine, and hybrid) and related species. Mitochondrial genomic diversity and phylogeography was also examined using more than 200 mitogenomes from ancient and modern cattle and several outgroup species.</p><p>Comparative phylogenetic analysis of the East Asian aurochs mitogenomes revealed that the mtDNA haplotypes possessed by all 16 Songnen Plain and QTP aurochsen are representative of the “C” haplogroup, which is an outgroup (with the K haplogroup) to all non-indicine <i>B</i>. <i>primigenius</i> haplogroups (P, Q, R, and T), splitting from these other mtDNA lineages approximately 150 kya. Hou et al. propose that this observation, coupled with a comparable nuclear genomic divergence, provides support for the taxonomic classification of the East Asian aurochs as a subsp
驯化牛的遗传起源和传播,与其他家畜物种一样,我们越仔细观察,就越复杂[1,2]。这一趋势在过去十年中加速了,特别是通过对全基因组序列(WGS)数据集(古基因组)的比较分析,这些数据集(古基因组)是使用来自已灭绝的野生野牛(Bos primigenius)的古代DNA (aDNA)生成的,野牛是现代牛种群的祖先[3-7]。这些和其他高分辨率家畜种群基因组学研究导致了对理解牛的遗传起源、驯化和多样性的简单模型的重新评估,这些模型是从对现代和古代牛的母系遗传线粒体DNA (mtDNA)的首次调查中发展起来的[8-10]。与我们对近代人类进化的更细致的理解和古人类基因流动的证据类似,现在很清楚的是,全新世野生原始人种群的核基因组渗入对现代牛品种的祖先产生了重大影响。全球牛遗传和表型多样性的丰富格局并不仅仅来自西南亚的少数驯化中心,这些驯养中心产生了现代无驼峰牛磺酸(Bos taurus)、驼峰牛磺酸(Bos indicus)和牛牛B. taurus ×牛B. indicus杂交种群。侯佳雯和她的同事最近发表的研究成果为研究原始牛的生物地理学提供了重要的新见解,并为东亚牛群中野牛混合的证据提供了新的证据。利用从中国东北松嫩平原和青藏高原采集的59个牛标本的考古材料,对16种不同的野牛进行了古基因组数据分析,这些野牛的放射性碳年代在3.7 - 37.0千万年之间。这些数据集与先前发表的74头古代野生和驯养牛的古基因组[6,7,13]以及来自近200头现代牛(牛磺酸牛、籼牛和杂交牛)和相关物种的WGS数据相结合。我们还利用来自古代和现代牛以及几个外群物种的200多个有丝分裂基因组对线粒体基因组多样性和系统地理学进行了研究。对东亚原牛有丝线基因组的比较系统发育分析表明,所有16个松农平原和QTP原牛的mtDNA单倍型均为具有代表性的“C”单倍群,该单倍群是所有非籼稻原牛单倍群(P、Q、R和T)的外群(与K单倍群),与这些其他mtDNA谱系分离约150 kya。侯等人提出,这一观察结果,加上类似的核基因组差异,为东亚原牛作为B. primigenius: B. p. sinensis的亚种的分类分类提供了支持,该分类适用于包括西欧亚原牛,B. p. primigenius的扩展分类;北非野牛,b.p. opisthonomus;南亚原牛,b.p. namadicus——可能是印度原牛的祖先。然而,值得注意的是,这种分类很大程度上是基于化石证据的,随着来自这些地区的原始牛的古基因组数据的收集,这种分类可能会得到实质性的修订。虽然从16个东亚野牛标本中获得的WGS数据提供了相对较小的基因组覆盖率,范围从0.01 ×到1.57 ×不等,但大多数高分辨率种群基因组学分析都可获得至少200万个单核苷酸多态性(snp)的共识数据集,这些数据集中在核基因组上。这项工作最值得注意的结果是,东亚原牛对该地区驯养牛种群的基因组祖先做出了贡献,这与欧亚大陆其他地区的观察结果相一致,为野生原牛与人类饲养的牛之间的驯化后相互作用提供了新的视角[5-7]。例如,来自全新世的东亚原牛显示出与古代家畜的遗传亲缘关系,它们与新石器时代晚期陕西世茂遗址3.9 kya的动物的基因组祖先贡献了约7%。这一结果支持了中国北方驯化种群与野生种群之间基因流动发生在4千年前的假设[3,13,14]。对基因流动和混合的进一步分析,也包括对QTP上发掘的3个Bos个体的早期研究,可追溯到公元前4000年中期,为现代QTP牛品种(昌都、定界、迪庆和玉树)的大量原牛祖先提供了多条统计证据。这是通过互补的方法来证明的,包括共享遗传漂变测试、系统发育网络分析、混合的正式测试和基于模型的祖先估计。 综上所述,这些分析表明,在家畜从西南亚向东迁移后不久,东亚原牛的入侵就开始了。图1提供了全新世早期欧洲、北非和亚洲原牛种群核和线粒体基因组多样性现状的简化说明[3,4,7,12]。随着未来几年野生牛和家畜古基因组数据的积累,QTP和东亚其他地区东亚野牛与家畜混合过程的程度和动态将得到更好的理解。涉及性别偏倚基因流(例如,主要由雄性介导的原牛输入)的基因渗入模型可以使用Y染色体单倍型进行测试,并在更精细的水平上,使用X染色体和常染色体祖先[15]的比较分析进行测试。此外,侯和他的同事对渗入的SNP等位基因进行了初步分析,发现东亚野牛的基因变异与免疫生物学、神经生物学和代谢相关。然而,这些野牛杂交的功能种群基因组学研究最终可以扩展到其他牲畜和伴侣动物物种的平行研究,这些研究已经发现了来自野生同系物的渗入基因和基因组调控元件(GREs),这些基因和调控元件影响了许多重要性状,包括对传染病的抵抗力和对特定环境条件(如高海拔和低氧水平)的适应[16-20]。了解渐渗的野牛基因和GRE变异在驯化牛这些适应性性状的基因组结构中的作用,将对利用基因组选择和基因编辑bb0的未来育种计划具有重要意义。詹姆斯A.沃德:写作-原稿,写作-审查和编辑,概念化,可视化。David E. MacHugh:概念化,写作原稿,资金获取,可视化,写作审查和编辑,项目管理,资源,监督。作者声明无利益冲突。
{"title":"Cattle Genomics: Aurochs Admixture in East Asia","authors":"James A. Ward, David E. MacHugh","doi":"10.1002/aro2.102","DOIUrl":"https://doi.org/10.1002/aro2.102","url":null,"abstract":"<p>The genetic origins and dispersal of domesticated cattle, in common with other livestock species, is getting increasingly complex the closer we look [<span>1, 2</span>]. This trend has accelerated over the last decade, particularly through comparative analyses of whole-genome sequence (WGS) data sets (paleogenomes) generated using ancient DNA (aDNA) from the extinct wild aurochs (<i>Bos primigenius</i>), the progenitor of modern cattle populations [<span>3-7</span>]. These and other high-resolution population genomics studies of domestic cattle have led to a reappraisal of simple models for understanding cattle genetic origins, domestication, and diversity, which developed from the first surveys of maternally inherited mitochondrial DNA (mtDNA) in modern and ancient cattle [<span>8-10</span>]. In a similar fashion to our more nuanced understanding of recent human evolution and the evidence for gene flow from archaic hominins [<span>11</span>], it is now clear that nuclear genomic introgression from wild aurochsen populations during the Holocene has had a significant impact on the ancestry of modern cattle breeds. The rich landscape of cattle genetic and phenotypic diversity across the globe does not derive solely from the small number of domestication centres in Southwest Asia that gave rise to modern humpless taurine (<i>Bos taurus</i>), humped indicine (<i>Bos indicus</i>), and <i>B</i>. <i>taurus</i> × <i>B</i>. <i>indicus</i> hybrid populations.</p><p>Recently published work from Jiawen Hou and her colleagues provides important new insights into the biogeography of <i>B</i>. <i>primigenius</i> and adds to the growing body of evidence for aurochs admixture in East Asian cattle [<span>12</span>]. Bovine archeological material representing 59 specimens collected from the Songnen Plain in Northeast China and from the Qinghai–Tibet Plateau (QTP), was used to generate paleogenomic data for 16 different aurochsen, which were radiocarbon dated to between 3.7 and 37.0 kya (thousand years ago). These data sets were integrated with previously published paleogenomes from 74 ancient wild and domestic cattle [<span>6, 7, 13</span>] plus WGS data from almost 200 modern cattle (taurine, indicine, and hybrid) and related species. Mitochondrial genomic diversity and phylogeography was also examined using more than 200 mitogenomes from ancient and modern cattle and several outgroup species.</p><p>Comparative phylogenetic analysis of the East Asian aurochs mitogenomes revealed that the mtDNA haplotypes possessed by all 16 Songnen Plain and QTP aurochsen are representative of the “C” haplogroup, which is an outgroup (with the K haplogroup) to all non-indicine <i>B</i>. <i>primigenius</i> haplogroups (P, Q, R, and T), splitting from these other mtDNA lineages approximately 150 kya. Hou et al. propose that this observation, coupled with a comparable nuclear genomic divergence, provides support for the taxonomic classification of the East Asian aurochs as a subsp","PeriodicalId":100086,"journal":{"name":"Animal Research and One Health","volume":"3 3","pages":"341-343"},"PeriodicalIF":0.0,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aro2.102","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144832889","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Enterococcus faecalis is known for its ability to form strong biofilms and its role as an opportunistic pathogen. In this study, we screened and characterized a multidrug-resistant (MDR) and strong biofilm-forming E. faecalis isolate obtained from a shrimp sample to determine its genetic diversity, molecular epidemiology, and underlying factors associated with antimicrobial resistance genes (ARGs) and virulence factor genes (VFGs). The E. faecalis MTR_EFS01 strain was isolated using culturing, staining, and biochemical tests and MALDI-TOF methods. The MDR profile of the strain was determined through the disk diffusion test. The complete genomic sequence of E. faecalis MTR_EFS01 was obtained using the Illumina NextSeq2000 platform. The de novo assembly of the E. faecalis MTR_EFS01 genome revealed a total length of 2,862,301 bp with 80.0 × coverage. This genome comprised 38 contigs, a G + C content of 37.4%, and identified two CRISPR arrays, seven prophages, and 55 RNA genes. The E. faecalis MTR_EFS01 strain was classified as ST862 with a high pathogenicity index of 0.896. The strain harbored eight ARGs conferring resistance to tetracycline, erythromycin, trimethoprim, and MDR efflux pumps. Furthermore, 27 VFGs were identified in this strain, linked to antiphagocytosis, adherence, biofilm formation, enzymes, and immune invasion. Metabolic functional analysis revealed that our strain had 243 subsystems, with the most abundant genes associated with carbohydrate metabolism, amino acids and derivatives, and protein metabolism. The findings in this study underscore the importance of continuous monitoring, research, and collaborative efforts to address the growing threat of MDR and biofilm-forming pathogens in diverse settings.
粪肠球菌以其形成强生物膜的能力和作为机会性病原体的作用而闻名。在这项研究中,我们筛选并鉴定了从虾样本中获得的多药耐药(MDR)和强生物膜形成的粪肠杆菌分离物,以确定其遗传多样性、分子流行病学以及与抗微生物药物耐药性基因(ARGs)和毒力因子基因(vfg)相关的潜在因素。采用培养、染色、生化试验和MALDI-TOF法分离得到粪肠杆菌MTR_EFS01菌株。通过圆盘扩散试验确定了菌株的MDR分布。利用Illumina NextSeq2000平台获得粪肠杆菌MTR_EFS01的全基因组序列。重新组装粪肠杆菌MTR_EFS01基因组,发现总长度为2862301 bp,覆盖率为80.0 ×。该基因组包含38个contigs, G + C含量为37.4%,鉴定出2个CRISPR阵列、7个噬菌体和55个RNA基因。菌株MTR_EFS01分类为ST862,致病性指数为0.896。该菌株含有8种ARGs,对四环素、红霉素、甲氧苄啶和耐多药外排泵具有耐药性。此外,在该菌株中鉴定出27个vfg,这些vfg与抗吞噬、粘附、生物膜形成、酶和免疫入侵有关。代谢功能分析表明,该菌株有243个子系统,其中碳水化合物代谢、氨基酸及其衍生物和蛋白质代谢相关基因最为丰富。本研究的发现强调了持续监测、研究和合作努力的重要性,以应对多种环境中耐多药和生物膜形成病原体日益增长的威胁。
{"title":"Genomic Insights Into a Strong Biofilm-Forming Enterococcus faecalis MTR_EFS01 Strain Isolated From a Shrimp in Bangladesh","authors":"Md. Ashek Ullah, Md. Saiful Islam, Md. Liton Rana, Jayedul Hassan, Md. Tanvir Rahman","doi":"10.1002/aro2.101","DOIUrl":"https://doi.org/10.1002/aro2.101","url":null,"abstract":"<p><i>Enterococcus faecalis</i> is known for its ability to form strong biofilms and its role as an opportunistic pathogen. In this study, we screened and characterized a multidrug-resistant (MDR) and strong biofilm-forming <i>E. faecalis</i> isolate obtained from a shrimp sample to determine its genetic diversity, molecular epidemiology, and underlying factors associated with antimicrobial resistance genes (ARGs) and virulence factor genes (VFGs). The <i>E. faecalis</i> MTR_EFS01 strain was isolated using culturing, staining, and biochemical tests and MALDI-TOF methods. The MDR profile of the strain was determined through the disk diffusion test. The complete genomic sequence of <i>E. faecalis</i> MTR_EFS01 was obtained using the Illumina NextSeq2000 platform. The de novo assembly of the <i>E. faecalis</i> MTR_EFS01 genome revealed a total length of 2,862,301 bp with 80.0 × coverage. This genome comprised 38 contigs, a G + C content of 37.4%, and identified two CRISPR arrays, seven prophages, and 55 RNA genes. The <i>E. faecalis</i> MTR_EFS01 strain was classified as ST862 with a high pathogenicity index of 0.896. The strain harbored eight ARGs conferring resistance to tetracycline, erythromycin, trimethoprim, and MDR efflux pumps. Furthermore, 27 VFGs were identified in this strain, linked to antiphagocytosis, adherence, biofilm formation, enzymes, and immune invasion. Metabolic functional analysis revealed that our strain had 243 subsystems, with the most abundant genes associated with carbohydrate metabolism, amino acids and derivatives, and protein metabolism. The findings in this study underscore the importance of continuous monitoring, research, and collaborative efforts to address the growing threat of MDR and biofilm-forming pathogens in diverse settings.</p>","PeriodicalId":100086,"journal":{"name":"Animal Research and One Health","volume":"3 4","pages":"379-388"},"PeriodicalIF":0.0,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aro2.101","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145470173","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Aeromonas hydrophila infection is one of the key factors limiting tilapia production, and antibiotics play important roles in the control of diseases. This study evaluated the effectiveness of florfenicol (FFC) when administered orally at the therapeutic dose of 15 mg/kg fish biomass/day for 10 days against A. hydrophila infection in Oreochromis niloticus in terms of survival, changes in haemato-biochemistry, erythrocyte morphology, and histoarchitecture of the vital organs. A. hydrophila was moderately virulent to tilapia with an LD50 of 1.15 × 107 cells/fish. When challenged, it caused systemic infection in fish. The challenged fish were lethargic, wandered around the corners, rested at the bottom, swam vertically, and darkly pigmented. The FFC therapy effectively reduced bacteria-induced mortalities and physiological stress as the measured haemato-biochemical parameters indicated. The histopathological findings suggested alterations in tissue architecture of the kidney and liver tissues, which improved in the treated fish. Erythrocytes of the challenged fish showed elongated, irregular-shaped, tear-drop-shaped, crenated, and hypochromic erythrocytes, ragged cytoplasmic membranes, vacuolation, hypertrophied nucleus, and eccentric nucleus. These morphological alterations were reduced with FFC therapy. Compared to the untreated group, the FFC treatment normalized the haemato-biochemical parameters, improved wound healing, and promoted fish recovery against bacterial infections. The results hinted at the effectiveness of FFC against A. hydrophila infection in O. niloticus juveniles at the therapeutic dose. However, care must be taken for its judicious aquacultural application to avoid its negative impacts on fish, the environment, and consumers.
{"title":"Haemato-biochemistry, erythromorphology, and histopathology of Oreochromis niloticus as influenced by Aeromonas hydrophila infection and florfenicol therapy","authors":"Joshi Sharon, Thangapalam Jawahar Abraham, Arya Sen, Ratnapriya Das, Priyanka Sinha, Satyanarayana Boda, Prasanna Kumar Patil","doi":"10.1002/aro2.100","DOIUrl":"https://doi.org/10.1002/aro2.100","url":null,"abstract":"<p><i>Aeromonas hydrophila</i> infection is one of the key factors limiting tilapia production, and antibiotics play important roles in the control of diseases. This study evaluated the effectiveness of florfenicol (FFC) when administered orally at the therapeutic dose of 15 mg/kg fish biomass/day for 10 days against <i>A. hydrophila</i> infection in <i>Oreochromis niloticus</i> in terms of survival, changes in haemato-biochemistry, erythrocyte morphology, and histoarchitecture of the vital organs. <i>A. hydrophila</i> was moderately virulent to tilapia with an LD<sub>50</sub> of 1.15 × 10<sup>7</sup> cells/fish. When challenged, it caused systemic infection in fish. The challenged fish were lethargic, wandered around the corners, rested at the bottom, swam vertically, and darkly pigmented. The FFC therapy effectively reduced bacteria-induced mortalities and physiological stress as the measured haemato-biochemical parameters indicated. The histopathological findings suggested alterations in tissue architecture of the kidney and liver tissues, which improved in the treated fish. Erythrocytes of the challenged fish showed elongated, irregular-shaped, tear-drop-shaped, crenated, and hypochromic erythrocytes, ragged cytoplasmic membranes, vacuolation, hypertrophied nucleus, and eccentric nucleus. These morphological alterations were reduced with FFC therapy. Compared to the untreated group, the FFC treatment normalized the haemato-biochemical parameters, improved wound healing, and promoted fish recovery against bacterial infections. The results hinted at the effectiveness of FFC against <i>A. hydrophila</i> infection in <i>O. niloticus</i> juveniles at the therapeutic dose. However, care must be taken for its judicious aquacultural application to avoid its negative impacts on fish, the environment, and consumers.</p>","PeriodicalId":100086,"journal":{"name":"Animal Research and One Health","volume":"3 1","pages":"54-70"},"PeriodicalIF":0.0,"publicationDate":"2025-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aro2.100","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143489695","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Fang Li, Minghao Li, Tongtong Zhang, Menghua Sui, Hasan Khatib, Xin Wang
Understanding differences in chromatin state and changes in gene regulatory landscape of placode (Pc) and dermal condensate are crucial for decoding hair follicle (HF) morphogenesis programs. To identify cell-type-specific chromatin accessibility patterns in the developing HF, we integrated chromatin accessibility and transcriptome profiles at single-cell resolution during the murine HF induction stage. We applied unbiased analyses to identify seven major HF cell types and reclustered dermal (Der) and epithelium (Epi) subtypes to trace their cell fate specification. Our analysis showed that gene regulation in Der and Epi lineages is largely determined by cis-regulatory elements that direct gene expression in response to specific developmental cues. The chromatin accessibility of Twist2, Enpp2, Dkk1, and Sox2 varied from fibroblasts (Fb) to pre-DC lineage, while that of Edar, Lhx2, and Wnt10b varied from Epi to Pc lineage. Cell-type-specific enrichment of transcription factor binding motifs implicated Twist2 and Nfatc4 as key regulators in Fb to pre-DC fate specification, and Fos, Bach1, and Klf1 in Epi to Pc niche fate specification. Additionally, alignment of cell-type-specific peaks to super-enhancer databases identified key regulatory elements in both lineages. We identified and validated the critical cis-regulatory elements in pre-DC and Pc fate specifications through embryonic dorsal skin culture in vitro, suggesting that these elements may regulate critical genes essential for HF induction. Overall, our results provide a foundation for a comprehensive analysis of gene regulatory programs that initiate HF development, offering insights into the molecular mechanism of HF morphogenesis and clinical treatments of alopecia by skin grafts.
{"title":"Decoding regulatory programs underlying placode and dermal condensate cell fate commitment during hair follicle induction via single-cell multi-omics analysis","authors":"Fang Li, Minghao Li, Tongtong Zhang, Menghua Sui, Hasan Khatib, Xin Wang","doi":"10.1002/aro2.99","DOIUrl":"https://doi.org/10.1002/aro2.99","url":null,"abstract":"<p>Understanding differences in chromatin state and changes in gene regulatory landscape of placode (Pc) and dermal condensate are crucial for decoding hair follicle (HF) morphogenesis programs. To identify cell-type-specific chromatin accessibility patterns in the developing HF, we integrated chromatin accessibility and transcriptome profiles at single-cell resolution during the murine HF induction stage. We applied unbiased analyses to identify seven major HF cell types and reclustered dermal (Der) and epithelium (Epi) subtypes to trace their cell fate specification. Our analysis showed that gene regulation in Der and Epi lineages is largely determined by <i>cis</i>-regulatory elements that direct gene expression in response to specific developmental cues. The chromatin accessibility of <i>Twist2</i>, <i>Enpp2</i>, <i>Dkk1,</i> and <i>Sox2</i> varied from fibroblasts (Fb) to pre-DC lineage, while that of <i>Edar</i>, <i>Lhx2,</i> and <i>Wnt10b</i> varied from Epi to Pc lineage. Cell-type-specific enrichment of transcription factor binding motifs implicated Twist2 and Nfatc4 as key regulators in Fb to pre-DC fate specification, and Fos, Bach1, and Klf1 in Epi to Pc niche fate specification. Additionally, alignment of cell-type-specific peaks to super-enhancer databases identified key regulatory elements in both lineages. We identified and validated the critical <i>cis</i>-regulatory elements in pre-DC and Pc fate specifications through embryonic dorsal skin culture in vitro, suggesting that these elements may regulate critical genes essential for HF induction. Overall, our results provide a foundation for a comprehensive analysis of gene regulatory programs that initiate HF development, offering insights into the molecular mechanism of HF morphogenesis and clinical treatments of alopecia by skin grafts.</p>","PeriodicalId":100086,"journal":{"name":"Animal Research and One Health","volume":"3 3","pages":"297-315"},"PeriodicalIF":0.0,"publicationDate":"2024-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aro2.99","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144832973","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Xinglong Gong, Tan Pan, Tiantian Xiong, Yifan Zhu, Juan J. Loor, Chengming Han, Yifan Li, Huan Lei, Jun Luo, Cong Li
Tribbles pseudokinase 3 (TRIB3) interacts with a variety of proteins and plays a key role in the regulation of glucose metabolism and glycolysis in nonruminants, but whether it has a specific role in goat mammary lipid metabolism has still been kept unknown. In this study, we observed that TRIB3 is highly expressed in the mammary tissues of lactating dairy goats. Overexpressing TRIB3 in goat mammary epithelial cells (GMECs) suppressed the mRNA expression of GPAM, DGAT1, and PLIN1, which are associated with the formation of triacylglycerol and lipid droplets (p < 0.05). The fatty acid-sensitive transcription regulator PPARG was also downregulated. Interfering TRIB3 had the opposite effect and decreased Akt phosphorylation. The TRIB3 gene influenced fatty acid composition in GMECs, and its overexpression reduced the total concentration of intracellular triacylglycerol (p < 0.01), this response was verified using BODIPY staining. Overall, these data indicated that TRIB3 suppresses milk fatty acids metabolism through inhibiting p-AKT/PPARG signaling in GMECs.
{"title":"TRIB3 suppresses milk fatty acids metabolism by inhibiting p-AKT/PPARG signaling in goat mammary epithelial cells","authors":"Xinglong Gong, Tan Pan, Tiantian Xiong, Yifan Zhu, Juan J. Loor, Chengming Han, Yifan Li, Huan Lei, Jun Luo, Cong Li","doi":"10.1002/aro2.98","DOIUrl":"https://doi.org/10.1002/aro2.98","url":null,"abstract":"<p>Tribbles pseudokinase 3 (<i>TRIB3</i>) interacts with a variety of proteins and plays a key role in the regulation of glucose metabolism and glycolysis in nonruminants, but whether it has a specific role in goat mammary lipid metabolism has still been kept unknown. In this study, we observed that <i>TRIB3</i> is highly expressed in the mammary tissues of lactating dairy goats. Overexpressing <i>TRIB3</i> in goat mammary epithelial cells (GMECs) suppressed the mRNA expression of <i>GPAM</i>, <i>DGAT1</i>, and <i>PLIN1</i>, which are associated with the formation of triacylglycerol and lipid droplets (<i>p</i> < 0.05). The fatty acid-sensitive transcription regulator <i>PPARG</i> was also downregulated. Interfering <i>TRIB3</i> had the opposite effect and decreased Akt phosphorylation. The <i>TRIB3</i> gene influenced fatty acid composition in GMECs, and its overexpression reduced the total concentration of intracellular triacylglycerol (<i>p</i> < 0.01), this response was verified using BODIPY staining. Overall, these data indicated that <i>TRIB3</i> suppresses milk fatty acids metabolism through inhibiting p-AKT/PPARG signaling in GMECs.</p>","PeriodicalId":100086,"journal":{"name":"Animal Research and One Health","volume":"3 3","pages":"268-277"},"PeriodicalIF":0.0,"publicationDate":"2024-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aro2.98","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144832402","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}