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In vitro protein protection of protein meals using Bioprotect and tannin extract from red grape marc 使用 Bioprotect 和红葡萄单宁提取物对蛋白粉进行体外蛋白质保护
Pub Date : 2024-01-09 DOI: 10.1002/aro2.43
Bereket Zeleke Tunkala, Kristy DiGiacomo, Pablo S. Alvarez Hess, Frank R. Dunshea, Brian J. Leury

Protecting crude protein in the rumen may reduce extensive protein degradation and ammonia emission and increase available bypass protein in ruminants. This experiment was conducted to determine the effect of two Bioprotect (15 and 30 mL/kg dry matter (DM)) and two tannin extract (TE) (20 and 40 g/kg DM) inclusion rates on protein protection and in vitro fermentation characteristics of canola and soybean meals incubated for 24 h using an ANKOM in vitro gas production system. The treated canola and soybean meals produced lower soluble protein (fraction ‘a’) and larger slowly degradable protein (fraction ‘b’) than its untreated counterparts, p < 0.01. However, the 20 g/kg DM TE inclusion showed lowest effect on the amount of protein fractions ‘a’ and ‘b’ in both meals compared to their other treated counterparts. The increasing concentration of additives reduced the total volatile fatty acids (VFA), p < 0.001. The effects of additives differed between the treatments as 15 mL/kg DM Bioprotect and 20 g/kg DM TE did not affect the acetic to propionic acid ratio (A:P) and the time before gas production began. The increase in fraction ‘b’ and reduction in protein fraction ‘a’ confirm successful protein protection in this experiment. However, the extensive reduction in ammonia-N and in vitro degradable protein after using 30 mL/kg DM Bioprotect suggests possible toxicity to the microbes responsible for protein digestion in higher doses. Therefore, 15 mL/kg DM Bioprotect and 40 g/kg DM TE could be promising protein protection doses for in vitro experiments.

保护瘤胃中的粗蛋白可减少反刍动物体内蛋白质的大量降解和氨的排放,并增加可利用的旁路蛋白。本实验使用 ANKOM 体外产气系统测定了两种生物保护剂(15 和 30 mL/kg 干物质 (DM))和两种单宁提取物(TE)(20 和 40 g/kg DM)的添加量对蛋白保护和培养 24 小时的菜籽粕和豆粕体外发酵特性的影响。与未处理的菜籽粕和豆粕相比,处理后的菜籽粕和豆粕产生的可溶性蛋白质("a "部分)较低,而缓慢降解蛋白质("b "部分)较高,p < 0.01。然而,与其他处理方法相比,添加 20 g/kg DM TE 对两种膳食中蛋白质组分 "a "和 "b "含量的影响最小。添加剂浓度的增加降低了总挥发性脂肪酸(VFA),p < 0.001。添加剂对不同处理的影响不同,因为 15 mL/kg DM Bioprotect 和 20 g/kg DM TE 不会影响乙酸与丙酸的比率(A:P)以及开始产气之前的时间。馏分'b'的增加和蛋白质馏分'a'的减少证实了本实验成功地保护了蛋白质。然而,在使用 30 mL/kg DM 生物保护剂后,氨氮和体外可降解蛋白质大量减少,这表明在较高剂量下可能会对负责消化蛋白质的微生物产生毒性。因此,15 毫升/千克 DM 生物保护剂和 40 克/千克 DM TE 可能是体外实验中保护蛋白质的理想剂量。
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引用次数: 0
Modeling animal genomics in mice: An authentic approach for the functional interrogation of evolutionarily and agriculturally critical variants 小鼠动物基因组学建模:对进化和农业关键变体进行功能检测的真实方法
Pub Date : 2024-01-09 DOI: 10.1002/aro2.46
Peter Kalds, Shiwei Zhou, Yulin Chen, Xiaolong Wang

Mouse modeling could offer a powerful in vivo investigation tool for validating the functional role of candidate genes and genomic variants detected in animal and livestock species via multi-omic analyses. In this Commentary, the authors discuss the potential of transgenic and genome-edited mice as significant models for validating the outcomes of livestock genomic and multi-omic analyses.

小鼠建模可为验证候选基因的功能作用以及通过多组学分析在动物和家畜物种中检测到的基因组变异提供强有力的体内研究工具。在这篇评论中,作者讨论了转基因小鼠和基因组编辑小鼠作为验证家畜基因组和多组学分析结果的重要模型的潜力。
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引用次数: 0
Advancements in artificial intelligence technology for improving animal welfare: Current applications and research progress 人工智能技术在改善动物福利方面的进步:当前应用与研究进展
Pub Date : 2023-12-29 DOI: 10.1002/aro2.44
Li Zhang, Wenqiang Guo, Chenrui Lv, Meng Guo, Mei Yang, Qiuyue Fu, Xiaomeng Liu

The integration of Artificial Intelligence (AI) in various sectors has led to significant advancements, with the animal industry being no exception. This review aims to investigate the benefits, limitations, and future prospects of AI technology in improving animal welfare. First, it examines the role of AI in understanding animal behaviors and emotions, providing deeper insights into their well-being and sources of stress. Next, the paper explores how AI can revolutionize animal nutrition through innovative algorithms and data analytics. The health aspect emphasizes the ability of AI to identify and manage illnesses through intelligent systems. This review also highlights the application of AI in improving animal living conditions, with a focus on environmental management and automated cleaning and disinfection systems. In conclusion, the review emphasizes AI-driven techniques for early prediction, close monitoring, and accurate diagnosis of animal diseases, ensuring healthier and more sustainable livestock management. By leveraging its advantages, addressing limitations, and exploring future directions, AI has the potential to significantly enhance animal welfare, sustainable agriculture, and veterinary practices.

人工智能(AI)与各行各业的结合带来了重大进步,动物行业也不例外。本综述旨在探讨人工智能技术在改善动物福利方面的益处、局限性和未来前景。首先,本文探讨了人工智能在理解动物行为和情绪方面的作用,从而更深入地了解动物的福祉和压力来源。接下来,本文探讨了人工智能如何通过创新算法和数据分析彻底改变动物营养状况。健康方面强调了人工智能通过智能系统识别和管理疾病的能力。本综述还强调了人工智能在改善动物生活条件方面的应用,重点是环境管理以及自动清洁和消毒系统。总之,本综述强调人工智能驱动的技术可用于动物疾病的早期预测、密切监测和准确诊断,从而确保更健康、更可持续的牲畜管理。通过利用其优势、解决局限性和探索未来方向,人工智能有可能显著提高动物福利、可持续农业和兽医实践。
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引用次数: 0
Marine Ranching: Paving the way for a sustainable blue granary 海洋牧场:为可持续发展的蓝色粮仓铺平道路
Pub Date : 2023-12-26 DOI: 10.1002/aro2.45
Zhenmin Bao

The oceans, teeming with life, have long been a crucial source of sustenance. Abundant in fish and salt and easily accessible by boat, the ocean has not only facilitated trade and communication but also served as a reliable source of food for human beings. As terrestrial agriculture grapples with challenges such as land degradation, water scarcity, and ecological damage, attention is increasingly turning to the ocean. As the Earth's largest ecosystem, the ocean hosts a wealth of resources, particularly in terms of biodiversity. China, an exploiting pioneer of marine resources, has emerged as the world's leading provider of aquaculture products, with two-thirds of its seafood coming from aquaculture. China's shift from traditional fishing to systematic marine agriculture offers a new model for the global community. Central to this strategic shift is the concept of “Marine Ranching,” which views the ocean as a vast, ecologically managed farm. Successfully implementing this concept is crucial for ensuring food security, protecting ecological equilibrium, and driving economic progress. It also presents some innovative opportunities to explore the “Greater Food” approach, utilizing new spaces, methods, and technologies.

However, “Marine Ranching” goes beyond simply transferring terrestrial farming practices to marine environments. It represents the innovative development of aquatic production models based on a comprehensive understanding and protection of the marine ecology. This encompasses systems for breeding high-quality species, implementing sustainable farming practices, disease prevention and control, as well as advancements in pre and postproduction processing and quality management. The continuous, open, and intricate nature of marine ecosystems presents challenges in their management and monitoring. Ensuring the reasonable scale, ecological capacity, balance, and biological health of “Marine Ranching” across vast ocean areas demands extensive technological development and exploratory practice. Furthermore, the development of “Marine Ranching” is a multidisciplinary and multifaceted challenge, requiring interdisciplinary collaboration in aquatic biology, ecology, environmental science, biotechnology, engineering equipment, and information technology. Additionally, we must promote open integration, sharing, and application of data throughout the entire fishery industry chain, with the goal of achieving a harmonious balance among economy, ecological environment, and social benefits.

This special issue on “Marine Ranching” aims to serve as a platform for scholarly exchange in this field, facilitating the dissemination of the latest developments, discoveries, technological innovations, and perspectives in marine agro-pastoral research. Drawing on these academic studies, we can continuously refine related technologies and establish a scientific, efficient, and sustainable blue granary production system. Globally, nations encounter s

长期以来,充满生机的海洋一直是人们赖以生存的重要来源。海洋富含鱼类和盐分,而且乘船前往十分方便,不仅促进了贸易和交流,也是人类可靠的食物来源。随着陆地农业努力应对土地退化、水资源短缺和生态破坏等挑战,人们越来越多地将目光转向海洋。作为地球上最大的生态系统,海洋蕴藏着丰富的资源,尤其是生物多样性。中国是海洋资源开发的先驱,已成为世界领先的水产养殖国,三分之二的海产品来自水产养殖。中国从传统渔业向系统化海洋农业的转变为全球社会提供了一个新模式。这一战略转变的核心是 "海洋牧场 "的概念,它将海洋视为一个巨大的生态管理农场。成功实施这一概念对于确保粮食安全、保护生态平衡和推动经济进步至关重要。然而,"海洋牧场 "不仅仅是简单地将陆地上的耕作方式转移到海洋环境中。然而,"海洋牧场 "不仅仅是将陆地上的养殖方法简单地移植到海洋环境中,而是在全面了解和保护海洋生态的基础上,创新性地发展水产生产模式。这包括培育优质物种、实施可持续养殖方法、疾病预防和控制以及产前产后加工和质量管理方面的进步。海洋生态系统具有连续性、开放性和复杂性,这给管理和监测工作带来了挑战。要确保 "海洋牧场 "在广阔海域的合理规模、生态容量、平衡和生物健康,需要大量的技术开发和探索实践。此外,发展 "海洋牧场 "是一个多学科、多方面的挑战,需要水生生物学、生态学、环境科学、生物技术、工程装备和信息技术等多学科的合作。本期 "海洋牧业 "特刊旨在作为该领域的学术交流平台,促进海洋农牧业研究的最新进展、发现、技术创新和观点的传播。在这些学术研究的基础上,我们可以不断完善相关技术,建立科学、高效、可持续的蓝色粮仓生产体系。总之,"海洋牧场 "的研究与开发是探索海洋资源可持续利用的重要战略,对于促进人类与海洋的和谐共生具有不可替代的独特价值。海洋牧场代表着科学研究的重点,以及对粮食安全和生态责任的承诺。随着技术的不断进步和研究的不断深入,它将为中国和世界带来一个更加可持续和繁荣的未来:作者声明无利益冲突。
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引用次数: 0
Novel FSH receptor heterodimer may be related to the high prolificacy of Jintang black goat 新型 FSH 受体异二聚体可能与金堂黑山羊的高产有关
Pub Date : 2023-12-11 DOI: 10.1002/aro2.35
Ye Cao, Sujun Zhao, M. Chu, R. Di, Yufang Liu, Li Liu, Xueqin Zhang, Shaoping Qian, Yizheng Zhang
Follicle‐stimulating hormone (FSH) is the central hormone of the mammalian reproductive system. It targets the FSH receptor (FSHR), a member of the G protein‐coupled receptor family, to induce the FSH signal transduction. In the highly prolific Jintang black goat, gonadotropin level is not higher than that of Boer goat. However, two isoforms of FSHRs (FSHRA and FSHRB), generated from the alternative splicing of the same primary FSHR transcript, were expressed in the reproductive organs of Jintang black goat simultaneously. The mRNA level of FSHRB is 45.89, 3.80, and 13.81 times greater than that of FSHRA in the hypothalamus, pituitary, and ovary of the Jintang black goat, respectively. We found that FSHRA could interact with FSHRB protein, leading to augment of the FSH signaling transduction pathway. The enhancement of FSH signaling could increase the in vitro oocyte maturation rate. It implied that this might be the important reason for the high prolificacy in Jintang black goat.
促卵泡激素(FSH)是哺乳动物生殖系统的核心激素。它以G蛋白偶联受体家族的FSH受体(FSHR)为靶标,诱导FSH信号转导。高产的金堂黑山羊的促性腺激素水平并不比波尔山羊高。然而,在金堂黑山羊的生殖器官中同时表达了两种FSHR异构体(FSHRA和FSHRB),这两种异构体是由相同的FSHR主转录本的替代剪接产生的。在金堂黑山羊的下丘脑、垂体和卵巢中,FSHRB的mRNA水平分别是FSHRA的45.89倍、3.80倍和13.81倍。我们发现,FSHRA能与FSHRB蛋白相互作用,导致FSH信号转导通路的增强。FSH信号转导通路的增强可提高体外卵母细胞成熟率。这意味着这可能是金堂黑山羊高产的重要原因。
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引用次数: 0
Comprehensive analysis of the circular RNA expression profile and circRNA–miRNA–mRNA network in the goat skin with divergent wool curvature 全面分析羊毛弯曲度不同的山羊皮肤中的环状 RNA 表达谱和 circRNA-miRNA-mRNA 网络
Pub Date : 2023-12-09 DOI: 10.1002/aro2.41
Yingxiao Su, Zhanqiang Zhao, Zhanfa Liu, Xiaobo Li, Qian Chen, Y. Pu, Lin Jiang, Xiao-hong He, Yuehui Ma, Qianjun Zhao
Wool curvature is one of the most valuable characteristics of Zhongwei goat fur. As the goats grow, the curvature progressively diminishes, which has a substantial impact on the quality and market value of wool. Circular RNAs (circRNAs) are a class of noncoding RNA and play vital roles in animal growth and development. However, the expression and function of circRNAs in the wool curvature of Zhongwei goats are unclear. In our study, we conducted circRNA expression profiling of Zhongwei goat skin exhibiting divergent curvature wool phenotypes at two developmental stages using the RNA‐seq. In total, 12,682 circRNAs and 158 differentially expressed circRNAs (DE circRNAs) were identified. KEGG analysis illustrated that host genes of DE circRNAs were significantly enriched in the signaling pathways of Ras, JAK/STAT5, and cAMP, which might affect wool curvature. We further validated five circRNAs using qRT‐PCR, which were consistent with the sequencing results. Functional verification assay demonstrated that circRNA8782 regulated fibroblast proliferation. In addition, we constructed a regulatory competing endogenous RNA (ceRNA) network and predicted circRNA3173‐miR‐16b‐5p‐IGF1 axes involved in the regulation of wool curvature. Our result will provide the foundation for uncovering the regulatory mechanisms of underlying wool curvature patterns in goats.
羊毛弯曲度是中卫山羊毛最宝贵的特征之一。随着山羊的生长,毛度逐渐减小,这对羊毛的质量和市场价值有重大影响。环状RNA (Circular RNA, circRNAs)是一类非编码RNA,在动物生长发育过程中发挥着重要作用。然而,circrna在中卫山羊羊毛弯曲中的表达和功能尚不清楚。在我们的研究中,我们使用RNA‐seq对中卫山羊皮肤在两个发育阶段表现出不同曲率羊毛表型的circRNA表达谱进行了分析。总共鉴定出12,682个circrna和158个差异表达circrna (DE circrna)。KEGG分析表明,DE circRNAs的宿主基因在Ras、JAK/STAT5和cAMP信号通路中显著富集,可能影响羊毛弯曲度。我们进一步使用qRT - PCR验证了5个circrna,结果与测序结果一致。功能验证实验表明circRNA8782调节成纤维细胞增殖。此外,我们构建了一个调控竞争内源性RNA (ceRNA)网络,并预测了circRNA3173‐miR‐16b‐5p‐IGF1轴参与羊毛曲率的调控。我们的结果将为揭示山羊潜在的羊毛弯曲模式的调节机制提供基础。
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引用次数: 0
African swine fever virus E120R inhibited cGAS-STING-mediated IFN-β and NF-κB pathways 非洲猪瘟病毒 E120R 可抑制 cGAS-STING 介导的 IFN-β 和 NF-κB 通路
Pub Date : 2023-12-08 DOI: 10.1002/aro2.38
Shuai Cui, Yang Wang, Shiyu Chen, Lichun Fang, Yajun Jiang, Zhongbao Pang, Yitong Jiang, Xiaoyu Guo, Hongfei Zhu, Hong Jia

African swine fever (ASF) is an acute and severe contagious disease triggered by the African swine fever virus (ASFV), which severely threatens the global swine industry. At present, no safe and efficacious vaccine has been provided to prevent and control this disease. The pathogenesis and immune evasion mechanism of ASFV are still unknown, which seriously hinders the development of safe and effective ASF vaccines. Certain proteins of ASFV involved in immunosuppression helped to evade the host innate immune response. The cGAS-STING signaling pathway is important to the innate immune system. It induces the production of type I interferons (IFNs) and other cytokines by recognizing cytoplasmic DNA, mediating antimicrobial innate immunity through type I IFN, and nuclear factor-κB (NF-κB) pathways. In the present study, E120R, a late-phase expression protein and a key virulent factor of ASFV inhibited cGAS-STING mediated promoter activities of IFN-β and NF-κB in HEK293T cells. The ectopic expression of E120R down-regulated IFN-β pathway by targeting interferon regulatory factor 3 (IRF3) and p65, inhibited the phosphorylation of STING, and further inhibited the phosphorylation of TANK-binding kinase 1 (TBK1) and IRF3, with no significant effects on p65 phosphorylation. Additionally, E120R also inhibited the NF-κB pathways by inhibiting the nuclear translocation of p50 and p65, which was mediated by Sendai virus (SeV). Further, the study showed that the 61–80 amino acids sites in the C-terminal domain of E120R were crucial for these functions. In conclusion, our work preliminarily elucidated a novel mechanism of inhibiting host innate immune response by ASFV E120R, which will provide a new target for the ASFV live gene deletion vaccine development and the theoretical basis for ASFV prevention.

非洲猪瘟(African swine fever, ASF)是由非洲猪瘟病毒(African swine fever virus, ASFV)引发的一种急性重症传染病,严重威胁着全球养猪业。目前,还没有安全有效的疫苗来预防和控制这种疾病。非洲猪瘟的发病机制和免疫逃避机制尚不清楚,严重阻碍了安全有效的非洲猪瘟疫苗的研制。ASFV的某些蛋白参与免疫抑制,帮助逃避宿主先天免疫反应。cGAS - STING信号通路对先天免疫系统非常重要。它通过识别细胞质DNA诱导I型干扰素(IFN)和其他细胞因子的产生,通过I型IFN和核因子κB (NF - κB)途径介导抗菌先天免疫。在本研究中,ASFV的晚期表达蛋白E120R和关键毒力因子抑制了cGAS - STING介导的HEK293T细胞中IFN - β和NF - κB启动子活性。E120R的异位表达通过靶向干扰素调节因子3 (IRF3)和p65下调IFN - β通路,抑制STING的磷酸化,并进一步抑制TANK结合激酶1 (TBK1)和IRF3的磷酸化,但对p65的磷酸化无显著影响。此外,E120R还通过抑制仙台病毒(SeV)介导的p50和p65的核易位来抑制NF‐κB通路。此外,研究表明,E120R C末端区域的61-80个氨基酸位点对这些功能至关重要。总之,我们的工作初步阐明了ASFV E120R抑制宿主先天免疫反应的新机制,将为ASFV基因缺失活疫苗的研制提供新的靶点,并为ASFV的预防提供理论依据。
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引用次数: 0
Multi‐omics analyses reveal the interaction between colonic microbiota and host in Min and Yorkshire pigs 多组学分析揭示明猪和约克夏猪结肠微生物群与宿主之间的相互作用
Pub Date : 2023-12-06 DOI: 10.1002/aro2.39
Xiaoyu Huang, Huihui Li, Feng Cheng, Ligang Wang, Guoqing Cao, Lixian Wang, Lijun Shi
Adoption of microbial preparations is becoming more and more prevalent in the pig breeding industry. Digestive tract microbes are recognized as crucial elements affecting physical characteristics of pigs. Until now, it is still challenging to establish connections between colonic microbiome and the host. In this study, weight gain models were created for Min and Yorkshire pigs. The colonic contents and colonic tissues were collected from two pig purebred strains (n = 8/group) with similar weights for multi‐omics analysis. By difference analysis of colonic microbiota, Min pigs observed a significantly higher relative abundance of Bacteroides, Phocaeicola, Roseburia, and Parabacteroides, and Yorkshire pigs had a strongly higher relative abundance of Streptococcus, Vescimonas, Ligilactobacillus, and Lactococcus. Functional annotation showed that the colonic microbiota of Min pigs had extensive dietary polysaccharide and immunomodulatory capacity. Through the correlation analysis of colonic microbiota with metabolomics of colonic content or transcriptomics of colonic tissues, we provided direct and indirect relationships of microorganisms and hosts. By verification, the contents of Occludin, ZO‐1, and pIgR in colonic tissue and sIgA, sIgG, and sIgM in colonic contents of Min pigs were significantly higher than that in Yorkshire pigs. This study revealed characteristics and functions of the colonic microbiota in Min and Yorkshire pigs and analyzed their interactions with the host. Also, we identified immune‐related microorganisms. These results provided a theoretical basis for understanding the influence of colonic microbiota on phenotype shaping in pigs.
在养猪业中,微生物制剂的采用越来越普遍。消化道微生物被认为是影响猪身体特征的关键因素。到目前为止,建立结肠微生物群与宿主之间的联系仍然具有挑战性。本研究建立了民猪和约克猪增重模型。收集2只体重相近的纯种猪(n = 8/组)的结肠内容物和结肠组织进行多组学分析。通过结肠菌群的差异分析,闽猪的拟杆菌、Phocaeicola、Roseburia和副杆菌的相对丰度显著高于约克猪,而链球菌、Vescimonas、liilactobacillus和乳球菌的相对丰度显著高于约克猪。功能注释表明闽猪结肠菌群具有丰富的饲粮多糖和免疫调节能力。通过结肠微生物群与结肠内容物代谢组学或结肠组织转录组学的相关性分析,我们提供了微生物与宿主的直接和间接关系。经验证,Min猪结肠组织中Occludin、ZO‐1和pIgR的含量以及结肠内容物中sIgA、sIgG和sIgM的含量显著高于约克郡猪。本研究揭示了闽猪和约克猪结肠微生物群的特征和功能,并分析了它们与宿主的相互作用。此外,我们还鉴定了免疫相关的微生物。这些结果为理解猪结肠微生物群对表型形成的影响提供了理论基础。
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引用次数: 0
Integrative analysis of genome-wide association study and transcriptomics to identify potential candidate genes influencing drip loss in Beijing Black pigs 通过全基因组关联研究和转录组学的整合分析,确定影响北京黑猪滴水损失的潜在候选基因
Pub Date : 2023-11-27 DOI: 10.1002/aro2.32
Hongmei Gao, Jingjing Tian, Run Zhang, Xiance Liu, Hai Liu, Fuping Zhao, Zhenhua Xue, Lixian Wang, Xitao Jing, Longchao Zhang

Understanding the genetic factors related to meat drip loss is of great importance for animal breeding and production. In this study, we employed a combination of genome-wide association study (GWAS) mapping and RNA sequencing (RNA-seq) data to effectively identify potentially functional single nucleotide polymorphisms (SNPs) as well as candidate genes associated with drip loss (DL) in Beijing Black pigs. Initially, we conducted a single- and multi-trait GWAS on drip loss traits in 441 Beijing Black pigs at 24 (DL24) and 48 (DL48) hours postmortem using the Illumina pig 50K SNP chip. Five SNPs with annotations for four genes (FGGY, LHFPL6, OSBPL1A, and NMNAT3) were consistently identified in single or multiple trait GWAS results, indicating their potential pleiotropic effects on drip loss. Next, a comprehensive comparative transcriptomic analysis was performed on samples of Beijing Black pigs exhibiting extremely high and low drip loss, resulting in the identification of 21 differentially expressed genes (DGEs) as potential candidates. Additionally, protein–protein interaction (PPI) network analysis revealed reciprocal regulatory relationships between FOXO1, OSBPL1A, DOCK1 (identified from GWAS) and the candidate DGEs obtained from RNA-seq data. Therefore, we propose that these genes may impact drip loss traits through gene interactions. In conclusion, our integrative analysis screened candidate genes that may affect the drip loss traits in Beijing Black pigs, which provides crucial insights into the molecular mechanisms of drip loss and serves as a theoretical reference for improving meat quality in Beijing Black pigs.

了解与肉类滴水损失相关的遗传因素对动物育种和生产具有重要意义。在本研究中,我们结合全基因组关联研究(GWAS)图谱和 RNA 测序(RNA-seq)数据,有效地鉴定了北京黑猪潜在的功能性单核苷酸多态性(SNPs)以及与滴水损失(DL)相关的候选基因。首先,我们使用 Illumina 猪 50K SNP 芯片对 441 头北京黑猪在死后 24 小时(DL24)和 48 小时(DL48)的滴水损失性状进行了单性状和多性状 GWAS 分析。在单性状或多性状 GWAS 结果中,5 个 SNPs(注释为 4 个基因(FGGY、LHFPL6、OSBPL1A 和 NMNAT3))被一致鉴定出来,表明它们对滴水损失具有潜在的多效作用。接下来,我们对表现出极高和极低滴水损失的北京黑猪样本进行了全面的转录组比较分析,最终鉴定出 21 个差异表达基因(DGEs)作为潜在候选基因。此外,蛋白质-蛋白质相互作用(PPI)网络分析揭示了 FOXO1、OSBPL1A、DOCK1(通过 GWAS 鉴定)和从 RNA-seq 数据中获得的候选 DGE 之间的相互调控关系。因此,我们认为这些基因可能通过基因相互作用影响滴水损失性状。总之,我们的综合分析筛选出了可能影响北京黑猪滴水损失性状的候选基因,为滴水损失的分子机制提供了重要的见解,并为改善北京黑猪的肉质提供了理论参考。
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引用次数: 0
The establishment and application of a one-step multiplex real-time polymerase chain reaction assay for the detection of Streptococcus suis, Streptococcus suis serotype 2, and Glaesserella parasuis 用于检测猪链球菌、猪链球菌血清 2 型和寄生璃色菌的一步法多重实时聚合酶链反应测定的建立与应用
Pub Date : 2023-11-27 DOI: 10.1002/aro2.37
Lingxiang Xin, Haojie Wang, Yunhao Hu, Yan Liu, Wensheng Yao, Xiuli Wang, Jian Li, Yuanjie Liu, Rendong Tong, Qi Wang, Youlong Lu, Liangquan Zhu

This article aims to establish a multiplex real-time polymerase chain reaction (PCR) assay for the simultaneous detection of Streptococcus suis (SS), Streptococcus suis serotype 2 (SS2), and Glaesserella parasuis (GPS). In this study, three pairs of primers and three probes were designed based on the specific sequences of SS (gdh), SS2 (cps2j), and GPS (infB). The results showed that the assay was not cross-reacted with other swine pathogens (Escherichia coli, Pasteurella multocida, Staphylococcus aureus, Streptococcus agalactiae, Streptococcus pneumoniae, Actinobacillus pleuropneumoniae, Mycoplasma hyopneumoniae, and Enterococcus faecalis; Streptococcus pyogenes). 108 to 102 copies/μL showed the R2 values for SS, SS2, and GPS were 0.999, 0.992, and 0.990, respectively. The multiplex real-time PCR efficiency was 93.816% for gdh, 105.260% for cps2j, and 93.175% for infB. The sensitivity result showed that SS, SS2, and GPS could be detected at 10 copies/μL. The repeatability result showed that intra-assay and inter-assay coefficients of variation of SS, SS2, and GPS were <2%. The best cutoff values for SS, SS2, and GPS were determined from ROC curves to be 35.085, 35.620, and 34.940, respectively. Areas under the curve were 0.943, 0.968, and 0.958. In total, 88 clinical samples were analyzed. The results indicated positive rates of 11.364% (10/88) for SS, 20.455% (18/88) for SS2, and 18.182% (16/88) for GPS. In conclusion, the developed one-step multiplex real-time PCR assay may be a valuable tool for the early detection of the SS, SS2 and, GPS with high specificity and sensitivity.

本文旨在建立一种多重实时聚合酶链式反应(PCR)检测方法,用于同时检测猪链球菌(SS)、猪链球菌血清型 2(SS2)和寄生璃色菌(GPS)。本研究根据 SS(gdh)、SS2(cps2j)和 GPS(infB)的特定序列设计了三对引物和三个探针。结果表明,该检测方法与其他猪病原体(大肠杆菌、多杀性巴氏杆菌、金黄色葡萄球菌、无乳链球菌、肺炎链球菌、胸膜肺炎放线杆菌、肺炎支原体、粪肠球菌;化脓性链球菌)无交叉反应。结果显示,SS、SS2 和 GPS 的 R2 值分别为 0.999、0.992 和 0.990。gdh 的多重实时 PCR 检测效率为 93.816%,cps2j 为 105.260%,infB 为 93.175%。灵敏度结果表明,在 10 个拷贝/μL 的条件下即可检测到 SS、SS2 和 GPS。重复性结果表明,SS、SS2 和 GPS 的测定内变异系数和测定间变异系数均为 2%。根据 ROC 曲线确定的 SS、SS2 和 GPS 的最佳临界值分别为 35.085、35.620 和 34.940。曲线下面积分别为 0.943、0.968 和 0.958。总共分析了 88 份临床样本。结果显示,SS 的阳性率为 11.364%(10/88),SS2 为 20.455%(18/88),GPS 为 18.182%(16/88)。总之,所开发的一步法多重实时 PCR 分析法可能是早期检测 SS、SS2 和 GPS 的一种有价值的工具,具有很高的特异性和灵敏度。
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Animal Research and One Health
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