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Single nucleotide polymorphisms in the CDH18 gene affect growth traits in Hu sheep CDH18基因的单核苷酸多态性影响湖羊的生长性状
Pub Date : 2023-09-05 DOI: 10.1002/aro2.22
Tianyi Liu, Yazhen Bi, Jingjing Bao, Mingyu Shang, Wenping Hu, Li Zhang
Growth traits are critical economic traits in sheep. Genetic polymorphism has a great influence on the improvement of sheep traits. The aim of this study was to analyze the effect of cadherin 18 (CDH18) gene polymorphisms on growth traits in Hu sheep. The single nucleotide polymorphisms (SNPs) of the CDH18 gene in Hu sheep were identified by Illumina Ovine SNP 50K BeadChip. Five SNPs were screened out within the CDH18 gene, where SNP1 (rs423955510) was located in exon and SNP2 (rs412944692), SNP3 (rs416959317), SNP4 (rs398980439) and SNP5 (rs428685044) were located in intron. The expression of the CDH18 gene in Hu sheep tissue was analyzed using quantitative real‐time polymerase chain reaction, and the structure and phylogeny of the gene were analyzed using bioinformatics techniques. The results showed that SNP1, SNP2, SNP4, and SNP5 were significantly associated with body weight and body size (p < 0.05). Meanwhile, there were strong linkage disequilibrium relationships between SNP1 and SNP2 (r2 > 0.33). The CDH18 gene was expressed in the muscle tissues of Hu sheep at different months. The relative expression levels at weaning and 4‐month muscle tissue were higher. Bioinformatic analysis revealed that SNP1 existed in the 5′ untranslated regions, which might affect the efficiency of translation. The above findings suggested that these SNP loci might affect growth traits and could be regarded as potential molecular markers for improving the growth performance of Hu sheep, which lay a molecular foundation for the breeding of sheep and accelerate the pace of sheep breeding.
生长性状是绵羊的重要经济性状。遗传多态性对绵羊性状的改良有很大影响。本研究旨在分析钙粘蛋白18 (CDH18)基因多态性对湖羊生长性状的影响。利用Illumina Ovine SNP 50K BeadChip对湖羊CDH18基因的单核苷酸多态性进行了鉴定。在CDH18基因中筛选出5个snp,其中SNP1 (rs423955510)位于外显子,SNP2 (rs412944692)、SNP3 (rs416959317)、SNP4 (rs398980439)和SNP5 (rs428685044)位于内含子。采用实时定量聚合酶链反应分析了CDH18基因在湖羊组织中的表达,并利用生物信息学技术分析了该基因的结构和系统发育。结果显示,SNP1、SNP2、SNP4和SNP5与体重和体尺寸显著相关(p 0.33)。CDH18基因在不同月龄湖羊肌肉组织中表达。断奶和4月龄肌肉组织的相对表达水平较高。生物信息学分析显示SNP1存在于5 '非翻译区,这可能会影响翻译效率。以上结果提示,这些SNP位点可能影响生长性状,可作为改善湖羊生长性能的潜在分子标记,为羊的育种奠定分子基础,加快羊的育种步伐。
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引用次数: 0
Waggle dance-related gene expression profiles in the honey bee (Apis mellifera) brain 蜜蜂大脑中摇摆舞相关基因表达谱
Pub Date : 2023-09-05 DOI: 10.1002/aro2.23
Kejun Yu, Yuanhong Zhao, Hongyi Nie, Zun Wu, Long Geng, Jingnan Huang, Zhaonan Zhang, Yang Lü, Songkun Su, Zhiguo Li

The honey bee dance communication system is one of the most intriguing animal communication signals. It allows foragers to share information related to food sources with nestmates using the waggle dance, which involves the transmission of location information through orientation and duration. Honey bee transcriptomes are dynamic with different stages, expressing an ensemble of differential genes that give rise to substantial behavior diversity. Here, we have provided a global view of mRNA expression profiles in three different stages of waggle dancers including dancing start (DS), dancing end (DE), and dancing cessation (DC). This study yielded 212 differentially expressed genes (DEGs). Among them, we identified 92 DEGs between DS and DC, 118 DEGs between DE and DC, and 2 DEGs between DS and DE. Further, gene ontology (GO) and KEGG analysis suggested that hormone-mediated signaling pathways and participation in pathways controlling the circadian rhythm, nicotinate, and nicotinamide metabolism were attributed to upregulated genes in DS. In addition, the D1 dopamine receptor in dopaminergic pathways, the peptide signaling involving apidaecin, and neprilysin-2 may play important roles in intricate behavioral processes.

蜜蜂舞蹈通信系统是最有趣的动物通信信号之一。它允许觅食者通过摇摆舞与同伴分享与食物来源相关的信息,这包括通过方向和持续时间传递位置信息。蜜蜂转录组在不同阶段是动态的,表达了一系列差异基因,从而产生了大量的行为多样性。在这里,我们提供了摇摆舞者三个不同阶段的mRNA表达谱的全局视图,包括跳舞开始(DS),跳舞结束(DE)和跳舞停止(DC)。本研究共获得212个差异表达基因(DEGs)。其中,我们发现DS和DC之间存在92个基因差异,DE和DC之间存在118个基因差异,DS和DE之间存在2个基因差异。此外,基因本体(GO)和KEGG分析表明,激素介导的信号通路和参与控制昼夜节律、烟酸盐和烟酰胺代谢的途径可归因于DS中上调的基因。此外,多巴胺能通路中的D1多巴胺受体、涉及apidaecin和neprilysin‐2的肽信号可能在复杂的行为过程中发挥重要作用。
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引用次数: 0
Transfer of β-agonists from animal feed into Tricholoma gambosum through manure β -激动剂从动物饲料通过粪便进入鼠口蘑的转移
Pub Date : 2023-09-02 DOI: 10.1002/aro2.24
Yunsheng Han, Tengfei Zhan, Kai Zhang, Qingyu Zhao, Xiaoqing Guo, Chaohua Tang, Junmin Zhang

Fungi are dependent on animal manure as a cultivation medium and may be vulnerable to feed-derived β-agonist contamination. To test whether β-agonists incorporated in animal feed can transport into fungi through manure, a greenhouse study was conducted with Tricholoma gambosum grown in a culture medium amended with medicated cattle manure. Cattle were orally administrated with a single (ractopamine, 670.0 μg/kg BW/day) or a mixture of β-agonists (clenbuterol, ractopamine, and salbutamol at the doses of 5.3, 223.3, and 50.0 μg/kg BW/day, respectively) for 28 days. Three batches of T. gambosum were harvested. A liquid chromatography tandem mass spectrometry-based method was developed to quantify the number of β-agonists taken up by T. gambosum from animal manure. The analytical recoveries for β-agonists were between 66.61% and 91.78% with relative standard deviations between 1.70% and 12.18%, and the limit of quantification (LOQ) was 0.3 ng/g. The ractopamine residues in T. gambosum from batch 1 were 1.3 ng/g and were below the LOQ in batches 2 and 3 in the single treatment group. In the mixed treatment group, ractopamine concentrations were 0.42 and 0.50 ng/g in batches 1 and 2, respectively, and the salbutamol concentration was 1.94 ng/g in batch 1, while clenbuterol was undetectable in all three batches. These results indicated that the β-agonists transferred to T. gambosum in trace amounts and presented a limited risk to consumers.

真菌依赖于动物粪便作为培养基,可能容易受到饲料来源的β激动剂污染。为了测试动物饲料中的β -激动剂是否可以通过粪便转运到真菌中,我们在温室中对黄鼠口蘑进行了一项研究,该研究在添加了药牛粪的培养基中进行。牛分别口服单剂(莱克多巴胺,670.0 μg/kg体重/天)或β受体激动剂(克仑特罗、莱克多巴胺和沙丁胺醇的混合物,剂量分别为5.3、223.3和50.0 μg/kg体重/天),连续28天。收获了三批鼠黄藤。建立了一种基于液相色谱串联质谱法的定量方法,用于定量动物粪便中鼠脑绦虫吸收β -激动剂的数量。β -激动剂的分析回收率为66.61% ~ 91.78%,相对标准偏差为1.70% ~ 12.18%,定量限为0.3 ng/g。单处理组第1批鼠脑中的莱克多巴胺残留量为1.3 ng/g,第2批和第3批鼠脑中的莱克多巴胺残留量均低于定量限。混合处理组第1批和第2批莱克多巴胺浓度分别为0.42和0.50 ng/g,第1批沙丁胺醇浓度为1.94 ng/g,而三批盐酸克仑特罗均未检出。这些结果表明β -激动剂以微量转移到鼠貂身上,对消费者的风险有限。
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引用次数: 0
Dihydromyricetin alleviates intestinal inflammation by changing intestinal microbial metabolites and inhibiting the expression of the MyD88/NF-κB signaling pathway 二氢杨梅素通过改变肠道微生物代谢物和抑制MyD88/NF‐κB信号通路的表达来缓解肠道炎症
Pub Date : 2023-08-31 DOI: 10.1002/aro2.21
Chaoyu Wen, Fan Zhang, Kang Yang, Sufang Han, Shiyan Jian, Baichuan Deng

Inflammatory bowel disease (IBD), a common chronic gastrointestinal disease in humans, has emerged as a global public health challenge. Dihydromyricetin (DHM) has anti-inflammatory and antioxidant activities, which can alleviate inflammation. In this study, we explored the effect and underlying mechanism of DHM on dextran sulfate sodium (DSS)-induced colitis in mice and porcine jejunum epithelial cells (IPEC-J2) exposed to lipopolysaccharide (LPS). We found that DHM alleviated loss of weight, diarrhea, and damage of colon structure in colitis mice. For the intestinal microbial, a significant rise in the amount of the potentially beneficial genera and a decline in the amount of harmful genera were observed in DHM-treated colitis mice. Metabolomic analysis of cecal content revealed that DHM restored phenylalanine metabolism, arginine biosynthesis, and arachidonic acid metabolism disorders caused by intestinal inflammation. Moreover, DHM decreased the level of pro-inflammatory cytokines and reactive oxygen species in LPS-treated IPEC-J2 cells. DHM also reduced the expression of MyD88 and nuclear factor-κB (NF-κB). In summary, we found that 125 mg/kg DHM administration alleviated diarrhea, reinstated intestinal barrier function, modulated intestinal dysbiosis, and suppressed the expression of myeloid differentiation factor 88 (MyD88) and NF-κB. Therefore, DHM may be a potentially therapeutic agent for IBD.

炎症性肠病(IBD)是人类常见的慢性胃肠道疾病,已成为全球公共卫生挑战。二氢杨梅素(DHM)具有抗炎和抗氧化活性,可以减轻炎症。在这项研究中,我们探讨了DHM对暴露于脂多糖(LPS)的小鼠和猪空肠上皮细胞(IPEC - J2)诱导的小鼠结肠炎的影响及其潜在机制。我们发现DHM减轻了结肠炎小鼠的体重减轻、腹泻和结肠结构损伤。对于肠道微生物,在DHM治疗的结肠炎小鼠中,观察到潜在有益菌的数量显著增加,有害菌的数量下降。盲肠内容物代谢组学分析显示,DHM可恢复肠道炎症引起的苯丙氨酸代谢、精氨酸生物合成和花生四烯酸代谢紊乱。此外,DHM降低了LPS处理的IPEC - J2细胞的促炎细胞因子和活性氧水平。DHM还能降低MyD88和核因子κB (NF - κB)的表达。综上所述,我们发现125 mg/kg DHM可以缓解腹泻,恢复肠道屏障功能,调节肠道生态失调,抑制髓样分化因子88 (MyD88)和NF - κB的表达。因此,DHM可能是一种潜在的IBD治疗剂。
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引用次数: 0
Genome editing pig models with elements for controllable gene expression 具有可控基因表达元件的基因组编辑猪模型
Pub Date : 2023-08-24 DOI: 10.1002/aro2.20
Qin Jin, Hui Shi, Xiaoyi Liu, Jialu Ju, Kepin Wang, Liangxue Lai

Conditional gene regulation systems can control gene expression in predefined tissues or organs at a desired time. Site-specific recombinase systems and chemically induced gene expression systems are the two most widely used approaches for creating genetically modified (GM) animals with conditional regulation of gene expression. Generation of GM pigs with controllable elements, usually involving multiple gene editing, used to be a major challenge due to a lack of germ line-competent pluripotent stem cells. With the emergence of artificial endonuclease-mediated gene editors, a variety of GM pigs with recombinase-specific recognition elements or chemically induced elements for conditional regulation of gene expression have been generated by the combination of site-directed knock-in of somatic cells and somatic cell nuclear transfer technology, allowing conditional deletion of endogenous genes or overexpression of exogenous genes in pigs. These inducible tool pig models will greatly facilitate the production of GM pigs and broaden the applications of transgenic pigs in biomedicine and agriculture fields. In this paper, we review the progress in the construction and application of pigs with controllable elements using gene editing techniques.

条件基因调控系统可以控制基因在预定组织或器官中的表达。位点特异性重组酶系统和化学诱导基因表达系统是两种最广泛使用的方法,用于创造基因表达有条件调节的转基因动物。由于缺乏生殖系能多能干细胞,具有可控元素的转基因猪的产生(通常涉及多个基因编辑)过去是一个主要挑战。随着人工核酸内切酶介导的基因编辑器的出现,通过结合体细胞的定点敲入和体细胞核转移技术,已经产生了多种具有重组酶特异性识别元件或化学诱导元件的基因表达条件调控的转基因猪,允许猪有条件地删除内源基因或过表达外源基因。这些诱导工具猪模型将极大地促进转基因猪的生产,拓宽转基因猪在生物医药和农业领域的应用。本文就利用基因编辑技术构建具有可控元件的猪及其应用进展进行综述。
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引用次数: 0
Deer antler reserve mesenchyme cells with hyaluronan alleviates cartilage damage in a rat model 加入透明质酸的鹿角储备间充质细胞可减轻大鼠软骨损伤
Pub Date : 2023-08-24 DOI: 10.1002/aro2.18
Boyin Jia, Xin Li, Xintong Han, Fuquan Ma, Linlin Zhang, Xue Wang, Xinrui Yan, Yu Zhang, Jianming Li, Pengfei Hu, Yusu Wang, Naichao Diao, Kun Shi, Ying Zong, Rui Du, Chunyi Li

Reserve mesenchyme cells (RMCs) of deer antlers have been considered as the promising cell source for repairing injury-induced articular cartilage or cartilage degeneration. However, systematic investigation of RMC differentiation to repair injured cartilage and its combination with biomaterials has not been reported. The aim of this study was to evaluate the role of RMCs in combination with hyaluronic acid (HA) in promoting chondrogenic differentiation through simulating native environments and their efficacy in articular cartilage repair. The RMCs were cultured in vitro for the characterization of these cells, including morphology, surface marker expression, and multipotent differentiation potential (adipogenesis, chondrogenesis, and osteogenesis). When combined with HA in vitro, RMCs increased expression levels of the chondrogenic marker gene (COL II and COMP) but decreased levels of the hypertrophic marker gene (COL X). Using a rat articular cartilage defect model, we evaluated the effects of RMCs in combination with HA on cartilage defect repair at 4 and 8 weeks through macroscopical, histological, and immunohistochemical examinations. Compared with other groups, treatment with RMCs + HA reduced cartilage loss and degree of cartilage surface worn, whereas cartilage content was significantly increased. These results suggest that the combination of RMCs with HA can effectively repair cartilage defects. We believe that effective cartilage defect repair will benefit from the use of RMCs together with favorable biomaterials, such as HA.

鹿角的储备间充质细胞(RMCs)被认为是修复损伤诱导的关节软骨或软骨变性的有希望的细胞来源。然而,RMC分化修复损伤软骨及其与生物材料结合的系统研究尚未见报道。本研究的目的是通过模拟自然环境来评估RMCs与透明质酸(HA)联合促进软骨分化的作用及其在关节软骨修复中的功效。我们在体外培养RMCs,对这些细胞进行表征,包括形态学、表面标记物表达和多能分化潜能(脂肪生成、软骨形成和成骨)。在体外与HA联合使用时,RMCs增加了软骨生成标记基因(COL II和COMP)的表达水平,但降低了增生性标记基因(COL X)的表达水平。通过大鼠关节软骨缺损模型,我们通过宏观、组织学和免疫组织化学检查,评估了RMCs与HA联合使用在第4周和第8周时对软骨缺损修复的影响。与其他组相比,RMCs + HA治疗可减少软骨损失和软骨表面磨损程度,软骨含量显著增加。这些结果表明RMCs与HA结合可以有效修复软骨缺损。我们相信有效的软骨缺损修复将受益于rmc和有利的生物材料,如透明质酸。
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引用次数: 0
Links between industrial livestock production, disease including zoonoses and antimicrobial resistance 工业化畜牧生产、包括人畜共患疾病和抗微生物耐药性之间的联系
Pub Date : 2023-08-19 DOI: 10.1002/aro2.19
Peter Stevenson

A range of studies indicates that keeping farm animals in crowded, stressful conditions leads to an increased risk of the emergence, transmission, and amplification of pathogens including zoonoses. Some such zoonoses could lead to a pandemic. Biosecurity, though essential, is not on its own sufficient to prevent the entry of disease into large, intensive livestock housing. To minimize disease risks, both biosecurity measures and the keeping of animals in conditions that are supportive of good health and effective immunocompetence are necessary. A further threat to human health arises from the routine use of antimicrobials in intensive livestock production to prevent disease. This high use of antimicrobials contributes significantly to the emergence of antimicrobial resistance in animals, which can then be transferred to people, thereby undermining the efficacy of the antimicrobials that are so important in human medicine. If we want to save our antimicrobials and minimize the risk of future zoonoses and pandemics, we need to move to “health-oriented systems” for the rearing of animals, systems in which good health is inherent in the farming methods rather than being dependent on the routine use of antimicrobials. Health-oriented systems should avoid high stocking densities and large group size, should minimize stress and mixing of animals, and ensure that animals can perform their natural behaviors as the inability to do so is highly stressful. They should avoid the use of animals selected for excessive production levels as these appear to involve an increased risk of immunological problems and pathologies.

一系列研究表明,将农场动物饲养在拥挤、紧张的环境中会增加包括人畜共患病在内的病原体出现、传播和扩增的风险。一些这样的人畜共患疾病可能导致一场大流行病。生物安全虽然至关重要,但其本身并不足以防止疾病进入大型密集型牲畜饲养场。为了最大限度地降低疾病风险,生物安全措施和将动物饲养在有助于良好健康和有效免疫能力的条件下都是必要的。对人类健康的进一步威胁来自于在集约化畜牧生产中常规使用抗菌药物来预防疾病。抗微生物药物的大量使用大大导致了动物抗微生物耐药性的出现,这种耐药性可以转移到人身上,从而削弱了在人类医学中非常重要的抗微生物药物。如果我们想保存我们的抗菌药物,并将未来人畜共患疾病和流行病的风险降至最低,我们就需要转向“以健康为导向的动物饲养系统”,在这种系统中,良好的健康是农业方法固有的,而不是依赖于抗菌药物的常规使用。以健康为导向的系统应避免高饲养密度和大型群体,应最大限度地减少动物的压力和混合,并确保动物能够进行其自然行为,因为无法这样做是非常有压力的。他们应该避免使用因生产水平过高而选择的动物,因为这些动物似乎会增加免疫问题和病理的风险。
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引用次数: 1
Research progress on animal environment and welfare 动物环境与福利研究进展
Pub Date : 2023-08-17 DOI: 10.1002/aro2.16
Baoming Li, Yang Wang, Li Rong, Weichao Zheng

Animal welfare closely depends on its ability to adapt and thrive in a harmonious relationship with its environment, ensuring both physical and psychological well-being. Over the years, the welfare of farm animals has gathered global attention and has become increasingly important to the general public and scientific communities. The connection between the environment and animal welfare is primarily established through the provision of suitable and controllable environment for animals. However, it is essential to recognize that the impact of environment extends beyond merely ensuring freedom from discomfort. The environment plays a crucial role in shaping an animal's response to challenges such as disease, stress, and pathogen. While animals may be housed in controlled environments that provide optimal conditions for health, production, and welfare, it is important to acknowledge that specific scenarios can significantly affect and alter the environmental requirements. Even with access to fresh air, certain factors can have a substantial impact on the well-being of animals. Furthermore, providing appropriate environmental conditions goes beyond meeting basic needs and can greatly contribute to allowing animals to engage in their natural behaviors. It serves as a relevant tool for ensuring and maintaining adequate welfare standards. This review takes a comprehensive approach to environmental welfare by considering the welfare of animals managed in different stocking systems, considering environmental stress, stocking systems, and the provision of environmental enrichment items. By examining these factors, a broader understanding of the relationship between environment and welfare is achieved and recommendations for future research are outlined.

动物的福利在很大程度上取决于它在与环境和谐相处中适应和茁壮成长的能力,确保身体和心理健康。多年来,农场动物的福利引起了全球的关注,对公众和科学界来说越来越重要。环境和动物福利之间的联系主要是通过为动物提供合适和可控的环境来建立的。然而,必须认识到,环境的影响不仅仅是确保免于不适。环境在塑造动物对疾病、压力和病原体等挑战的反应方面发挥着至关重要的作用。虽然动物可能被安置在为健康、生产和福利提供最佳条件的受控环境中,但重要的是要认识到,特定的情况会显著影响和改变环境要求。即使有了新鲜空气,某些因素也会对动物的健康产生重大影响。此外,提供适当的环境条件不仅能满足基本需求,还能极大地促进动物的自然行为。它是确保和维持适当福利标准的相关工具。本综述通过考虑不同饲养系统中管理的动物的福利,考虑环境压力、饲养系统和环境富集项目的提供,对环境福利采取了全面的方法。通过研究这些因素,可以更广泛地理解环境和福利之间的关系,并概述了未来研究的建议。
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引用次数: 0
Safety and quality evaluations of liquid milk and infant formula products in China in 2022 2022年中国液态奶及婴幼儿配方奶粉产品安全质量评价
Pub Date : 2023-08-11 DOI: 10.1002/aro2.11
Lu Meng, Nan Zheng, Yanan Gao, Huimin Liu, Jiaqi Wang

Milk serves two nutritional functions: it provides nutrition while also maintaining a healthy intestinal microenvironment. Thus, the safety and quality of milk products are critical for consumers' health. To evaluate liquid milk and infant formula products in China, we analyzed nine indices of 294 batches of pasteurized milk (PM), 92 batches of ultra-high temperature milk (UHT), and 20 batches of infant formula milk powder (IF) collected from 21 provinces in 2022. All PM, UHT, and IF samples were satisfactory concerning aflatoxin M1 contamination, contamination by heavy metals, and residues of veterinary drugs and pesticides. The contents of lactoferrin, α-lactalbumin, β-lactoglobulin, furosine, and lactulose in the majority of samples met the group standards. Moreover, the contents of lactoferrin, α-lactalbumin, and β-lactoglobulin were higher in PM than in UHT, while furosine and lactulose contents showed the opposite trend. The findings concerning the safety and quality of milk products in China provide important insights to aid consumer preferences for milk products.

牛奶有两种营养功能:它提供营养,同时保持健康的肠道微环境。因此,奶制品的安全和质量对消费者的健康至关重要。为了评估中国的液态奶和婴儿配方奶粉产品,我们分析了2022年从21个省份收集的294批次巴氏灭菌奶(PM)、92批次超高温奶(UHT)和20批次婴儿配方奶粉(IF)的9项指标。所有PM、UHT和IF样品在黄曲霉毒素M1污染、重金属污染以及兽药和农药残留方面均令人满意。大多数样品中乳铁蛋白、α-乳清蛋白、β-乳球蛋白、糠氨酸和乳果糖的含量符合组标准。此外,PM中乳铁蛋白、α-乳清蛋白和β-乳球蛋白的含量高于UHT,而糠氨酸和乳果糖的含量则呈现相反的趋势。有关中国乳制品安全和质量的研究结果为帮助消费者偏好乳制品提供了重要见解。
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引用次数: 0
Multi-trait genomic predictions using GBLUP and Bayesian mixture prior model in beef cattle 基于GBLUP和贝叶斯混合先验模型的肉牛多性状基因组预测
Pub Date : 2023-08-06 DOI: 10.1002/aro2.13
Zezhao Wang, Haoran Ma, Hongwei Li, Lei Xu, Hongyan Li, Bo Zhu, El Hamidi Hay, Lingyang Xu, Junya Li

Multiple trait genomic selection incorporating correlated traits can improve the predictive ability of low-heritability traits. In this study, we evaluated genomic prediction accuracy using multi-trait BayesCπ method (MT-BayesCπ), which allows for a broader range of mixture priors for important traits in beef cattle. We compared the prediction performance of MT-BayesCπ with single-trait genomic best linear unbiased prediction (ST-GBLUP), multi-trait GBLUP (MT-GBLUP), and single-trait BayeCπ (ST-BayesCπ) methods. We found that ribeye area (REA) and ribeye weight (REWT) showed high heritability, while slaughter weight (SWT) and carcass weight (CWT) displayed medium heritability, and slaughter rate (SR) and feedlot average daily gain (FDG) showed low heritability. Highly positive genetic correlations were observed between CWT and SWT (0.981) and SR and REWT (0.921). Notably, the MT-BayesCπ method showed superior predictive abilities compared to other models. Using MT-BayesCπ method, the accuracy increased from 0.272 to 0.694 for CWT compared to ST-GBLUP and ST-BayesCπ. MT-GBLUP and ST-BayesCπ showed similar prediction accuracies, while MT-BayesCπ showed the least biased evaluations. Additionally, our results suggested that prediction accuracy of low-heritability traits significantly increased when they were combined with traits with high genetic correlation in a multi-trait prediction. Our study suggests that multi-trait genomic predictions using GBLUP and Bayesian mixture prior models is feasible for genomic selection in beef cattle. Our findings indicate that MT-BayesCπ outperforms other models (ST-GBLUP, MT-GBLUP and ST-BayesCπ), especially for low-heritability traits.

结合相关性状的多性状基因组选择可以提高低遗传力性状的预测能力。在这项研究中,我们使用多性状贝叶斯Cπ方法(MT贝叶斯Cπ)评估了基因组预测的准确性,该方法为肉牛的重要性状提供了更广泛的混合先验。我们比较了MT贝叶斯Cπ与单特征基因组最佳线性无偏预测(ST-GBLUP)、多特征GBLUP(MT-GBLUP)和单特征贝叶斯Cπ(ST贝叶斯Cπ)方法的预测性能。结果表明,肋叶面积(REA)和肋叶重(REWT)具有较高的遗传力,屠宰重(SWT)和胴体重(CWT)具有中等遗传力,而屠宰率(SR)和饲养场平均日增重(FDG)具有较低的遗传力。CWT和SWT(0.981)以及SR和REWT(0.921)之间存在高度正相关。值得注意的是,与其他模型相比,MT-BayesCπ方法显示出优越的预测能力。与ST-GBLUP和ST-BayesCπ相比,使用MT-BayesCπ方法,CWT的精度从0.272提高到0.694。MT-GBLUP和ST-BayesCπ显示出相似的预测精度,而MT-BayesCπ显示出最小的偏差评估。此外,我们的研究结果表明,在多性状预测中,当低遗传力性状与高遗传相关性的性状相结合时,其预测精度显著提高。我们的研究表明,使用GBLUP和贝叶斯混合先验模型进行多性状基因组预测对于肉牛的基因组选择是可行的。我们的研究结果表明,MT贝叶斯Cπ优于其他模型(ST-GBLUP、MT-GBLUP和ST贝叶斯Cπ),尤其是在低遗传力性状方面。
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引用次数: 0
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Animal Research and One Health
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